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PMC:3291650 / 23905-24140 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T8704 138-147 Positive_regulation denotes increased
T8703 82-92 Binding denotes associated
T8702 59-64 Protein denotes IL-1β
T8701 51-54 Protein denotes TNF
T8700 45-49 Protein denotes IL-6
T8662 59-64 Protein denotes IL-1β
T8661 51-54 Protein denotes TNF
T8660 45-49 Protein denotes IL-6
R6113 T8700 T8703 themeOf IL-6,associated
R6114 T8701 T8703 themeOf TNF,associated
R6115 T8702 T8703 themeOf IL-1β,associated
R6116 T8703 T8704 themeOf associated,increased

2_test

Id Subject Object Predicate Lexical cue
22396652-17213831-98461862 128-130 17213831 denotes 64

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9885 55-58 CC denotes and
T9884 51-54 NN denotes TNF
T9883 49-50 -COMMA- denotes ,
T9882 45-49 NN denotes IL-6
T9881 35-44 NN denotes cytokines
T9880 19-34 JJ denotes proinflammatory
T9879 15-18 DT denotes the
T9878 12-14 IN denotes of
T9877 5-11 NN denotes levels
T9876 0-4 RB denotes Also
T9918 233-234 -RRB- denotes )
T9917 230-233 NN denotes S3A
T9916 223-229 NN denotes figure
T9915 219-222 CC denotes and
T9914 216-218 NN denotes 4C
T9913 209-215 NN denotes figure
T9912 208-209 -LRB- denotes (
T9911 200-207 NN denotes animals
T9910 192-199 NN denotes control
T9909 189-191 TO denotes to
T9908 180-188 VB denotes compared
T9907 175-179 NN denotes mice
T9906 164-174 NN denotes A20myel-KO
T9905 161-163 IN denotes of
T9904 155-160 NN denotes lungs
T9903 151-154 DT denotes the
T9902 148-150 IN denotes in
T9901 138-147 VB denotes increased
T9900 133-137 VB denotes were
T9899 131-132 -COMMA- denotes ,
T9898 130-131 -RRB- denotes ]
T9897 128-130 CD denotes 64
T9896 127-128 -LRB- denotes [
T9895 120-126 NN denotes humans
T9894 117-119 IN denotes in
T9893 98-116 NN denotes immunopathogenesis
T9892 93-97 IN denotes with
T9891 82-92 VB denotes associated
T9890 76-81 RB denotes often
T9889 72-75 VB denotes are
T9888 66-71 WDT denotes which
T9887 64-65 -COMMA- denotes ,
T9886 59-64 NN denotes IL-1β
R7121 T9877 T9878 arg1Of levels,of
R7122 T9877 T9887 arg1Of levels,","
R7123 T9877 T9888 arg1Of levels,which
R7124 T9877 T9889 arg1Of levels,are
R7125 T9877 T9891 arg2Of levels,associated
R7126 T9877 T9900 arg1Of levels,were
R7127 T9877 T9901 arg2Of levels,increased
R7128 T9881 T9879 arg1Of cytokines,the
R7129 T9881 T9880 arg1Of cytokines,proinflammatory
R7130 T9882 T9883 arg1Of IL-6,","
R7131 T9883 T9885 arg1Of ",",and
R7132 T9884 T9883 arg2Of TNF,","
R7133 T9885 T9878 arg2Of and,of
R7134 T9885 T9881 arg1Of and,cytokines
R7135 T9886 T9885 arg2Of IL-1β,and
R7136 T9891 T9889 arg2Of associated,are
R7137 T9891 T9890 arg1Of associated,often
R7138 T9891 T9892 arg1Of associated,with
R7139 T9893 T9892 arg2Of immunopathogenesis,with
R7140 T9893 T9894 arg1Of immunopathogenesis,in
R7141 T9895 T9894 arg2Of humans,in
R7142 T9895 T9896 arg1Of humans,[
R7143 T9897 T9896 arg2Of 64,[
R7144 T9898 T9896 arg3Of ],[
R7145 T9901 T9876 arg1Of increased,Also
R7146 T9901 T9899 arg1Of increased,","
R7147 T9901 T9900 arg2Of increased,were
R7148 T9901 T9902 arg1Of increased,in
R7149 T9901 T9908 arg1Of increased,compared
R7150 T9904 T9902 arg2Of lungs,in
R7151 T9904 T9903 arg1Of lungs,the
R7152 T9904 T9905 arg1Of lungs,of
R7153 T9907 T9905 arg2Of mice,of
R7154 T9907 T9906 arg1Of mice,A20myel-KO
R7155 T9909 T9908 arg2Of to,compared
R7156 T9911 T9909 arg2Of animals,to
R7157 T9911 T9910 arg1Of animals,control
R7158 T9911 T9912 arg1Of animals,(
R7159 T9914 T9913 arg1Of 4C,figure
R7160 T9914 T9915 arg1Of 4C,and
R7161 T9915 T9912 arg2Of and,(
R7162 T9917 T9915 arg2Of S3A,and
R7163 T9917 T9916 arg1Of S3A,figure
R7164 T9918 T9912 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8812 59-64 Protein denotes IL-1β
T8811 51-54 Protein denotes TNF
T8810 45-49 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11143 59-64 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T11142 51-54 http://www.uniprot.org/uniprot/P01375 denotes TNF
T11130 45-49 http://www.uniprot.org/uniprot/P05231 denotes IL-6

UBERON-AE

Id Subject Object Predicate Lexical cue
T8716 155-160 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lungs

GO-MF

Id Subject Object Predicate Lexical cue
T8856 45-49 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

sentences

Id Subject Object Predicate Lexical cue
T8748 0-235 Sentence denotes Also levels of the proinflammatory cytokines IL-6, TNF and IL-1β, which are often associated with immunopathogenesis in humans [64], were increased in the lungs of A20myel-KO mice compared to control animals (figure 4C and figure S3A).
T146 0-235 Sentence denotes Also levels of the proinflammatory cytokines IL-6, TNF and IL-1β, which are often associated with immunopathogenesis in humans [64], were increased in the lungs of A20myel-KO mice compared to control animals (figure 4C and figure S3A).

simple1

Id Subject Object Predicate Lexical cue
T8924 59-64 Protein denotes IL-1β
T8923 51-54 Protein denotes TNF
T8922 45-49 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11386 138-147 Positive_regulation denotes increased
T11378 59-64 Protein denotes IL-1β
T11377 51-54 Protein denotes TNF
T11376 45-49 Protein denotes IL-6
R8450 T11376 T11386 themeOf IL-6,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11170 138-147 Positive_regulation denotes increased
T11164 59-64 Protein denotes IL-1β
T11163 51-54 Protein denotes TNF
T11162 45-49 Protein denotes IL-6
R8368 T11164 T11170 themeOf IL-1β,increased

DLUT931

Id Subject Object Predicate Lexical cue
T11199 138-147 Positive_regulation denotes increased
T11194 59-64 Protein denotes IL-1β
T11193 51-54 Protein denotes TNF
T11192 45-49 Protein denotes IL-6
R8384 T11192 T11199 themeOf IL-6,increased
R8385 T11193 T11199 themeOf TNF,increased
R8386 T11194 T11199 themeOf IL-1β,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T11410 45-49 Protein denotes IL-6
T11401 223-233 Protein denotes figure S3A
T11505 66-132 Binding denotes which are often associated with immunopathogenesis in humans [64],
T11486 59-65 Protein denotes IL-1β,
T11479 175-179 Protein denotes mice
T11456 51-54 Protein denotes TNF

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11033 234-235 . denotes .
T11032 233-234 -RRB- denotes )
T11031 230-233 NNP denotes S3A
T11030 223-229 NN denotes figure
T11029 219-222 CC denotes and
T11028 216-218 NN denotes 4C
T11027 209-215 NN denotes figure
T11026 208-209 -LRB- denotes (
T11025 200-207 NNS denotes animals
T11024 192-199 VB denotes control
T11023 189-191 TO denotes to
T11022 180-188 VBN denotes compared
T11021 175-179 NNS denotes mice
T11020 164-174 JJ denotes A20myel-KO
T11019 161-163 IN denotes of
T11018 155-160 NNS denotes lungs
T11017 151-154 DT denotes the
T11016 148-150 IN denotes in
T11015 138-147 VBN denotes increased
T11014 133-137 VBD denotes were
T11013 131-132 , denotes ,
T11012 130-131 NNP denotes ]
T11011 128-130 CD denotes 64
T11010 127-128 NNP denotes [
T11009 120-126 NNS denotes humans
T11008 117-119 IN denotes in
T11007 98-116 NN denotes immunopathogenesis
T11006 93-97 IN denotes with
T11005 82-92 VBN denotes associated
T11004 76-81 RB denotes often
T11003 72-75 VBP denotes are
T11002 66-71 WDT denotes which
T11001 64-65 , denotes ,
T11000 59-64 NNP denotes IL-1β
T10999 55-58 CC denotes and
T10998 51-54 NNP denotes TNF
T10997 49-50 , denotes ,
T10996 45-49 NNP denotes IL-6
T10995 35-44 NNS denotes cytokines
T10994 19-34 JJ denotes proinflammatory
T10993 15-18 DT denotes the
T10992 12-14 IN denotes of
T10991 5-11 NNS denotes levels
T10990 0-4 RB denotes Also
R8233 T10990 T11015 advmod Also,increased
R8235 T10991 T11015 nsubjpass levels,increased
R8236 T10992 T10991 prep of,levels
R8237 T10993 T10995 det the,cytokines
R8239 T10994 T10995 amod proinflammatory,cytokines
R8240 T10995 T10992 pobj cytokines,of
R8241 T10996 T11015 nsubjpass IL-6,increased
R8243 T10997 T10996 punct ",",IL-6
R8244 T10998 T10996 conj TNF,IL-6
R8245 T10999 T10998 cc and,TNF
R8247 T11000 T10998 conj IL-1β,TNF
R8248 T11001 T11000 punct ",",IL-1β
R8249 T11002 T11005 nsubjpass which,associated
R8251 T11003 T11005 auxpass are,associated
R8252 T11004 T11005 advmod often,associated
R8253 T11005 T10996 relcl associated,IL-6
R8254 T11006 T11005 prep with,associated
R8255 T11007 T11006 pobj immunopathogenesis,with
R8256 T11008 T11007 prep in,immunopathogenesis
R8258 T11009 T11008 pobj humans,in
R8259 T11010 T11012 nmod [,]
R8260 T11011 T11012 nummod 64,]
R8261 T11012 T11007 appos ],immunopathogenesis
R8262 T11013 T11015 punct ",",increased
R8263 T11014 T11015 auxpass were,increased
R8265 T11015 T11015 ROOT increased,increased
R8266 T11016 T11015 prep in,increased
R8267 T11017 T11018 det the,lungs
R8269 T11018 T11016 pobj lungs,in
R8270 T11019 T11018 prep of,lungs
R8271 T11020 T11021 amod A20myel-KO,mice
R8273 T11021 T11019 pobj mice,of
R8274 T11022 T11015 prep compared,increased
R8275 T11023 T11024 aux to,control
R8276 T11024 T11022 xcomp control,compared
R8278 T11025 T11024 dobj animals,control
R8279 T11026 T11025 punct (,animals
R8280 T11027 T11028 compound figure,4C
R8282 T11028 T11025 appos 4C,animals
R8283 T11029 T11028 cc and,4C
R8284 T11030 T11031 compound figure,S3A
R8285 T11031 T11028 conj S3A,4C
R8287 T11032 T11031 punct ),S3A
R8288 T11033 T11015 punct .,increased

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11294 138-147 Positive_regulation denotes increased
T11293 138-147 Positive_regulation denotes increased
T11292 138-147 Positive_regulation denotes increased
T11291 5-11 Gene_expression denotes levels
T11290 5-11 Gene_expression denotes levels
T11289 5-11 Gene_expression denotes levels
T11288 59-64 Protein denotes IL-1β
T11287 51-54 Protein denotes TNF
T11286 35-49 Protein denotes cytokines IL-6
R8423 T11286 T11289 themeOf cytokines IL-6,levels
R8424 T11287 T11290 themeOf TNF,levels
R8426 T11288 T11291 themeOf IL-1β,levels
R8427 T11289 T11292 themeOf levels,increased
R8429 T11290 T11293 themeOf levels,increased
R8430 T11291 T11294 themeOf levels,increased

testone

Id Subject Object Predicate Lexical cue
T8638 138-147 Positive_regulation denotes increased
T8615 59-64 Protein denotes IL-1β
T8614 51-54 Protein denotes TNF
T8613 45-49 Protein denotes IL-6
R6092 T8614 T8638 themeOf TNF,increased
R6093 T8615 T8638 themeOf IL-1β,increased