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PMC:3291650 / 21971-22135 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T8693 117-124 Negative_regulation denotes absence
T8692 102-109 Regulation denotes altered
T8691 62-72 Gene_expression denotes expression
T8690 20-23 Protein denotes GrB
T8657 20-23 Protein denotes GrB
R6108 T8690 T8691 themeOf GrB,expression
R6109 T8691 T8692 themeOf expression,altered
R6110 T8693 T8692 causeOf absence,altered

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9580 150-156 NN denotes figure
T9579 149-150 -LRB- denotes (
T9578 143-148 NN denotes cells
T9577 135-142 JJ denotes myeloid
T9576 132-134 IN denotes in
T9575 128-131 NN denotes A20
T9574 125-127 IN denotes of
T9573 117-124 NN denotes absence
T9572 113-116 DT denotes the
T9571 110-112 IN denotes by
T9570 102-109 VB denotes altered
T9569 98-101 RB denotes not
T9568 93-97 VB denotes were
T9567 87-92 NN denotes lungs
T9566 83-86 DT denotes the
T9565 80-82 IN denotes in
T9564 73-79 NN denotes levels
T9563 62-72 NN denotes expression
T9562 57-61 NN denotes IFNγ
T9561 54-56 IN denotes as
T9560 49-53 RB denotes well
T9559 46-48 RB denotes as
T9558 40-45 NN denotes cells
T9557 38-39 NN denotes T
T9556 33-37 JJ denotes CD8+
T9555 28-32 NN denotes IFNγ
T9554 24-27 CC denotes and
T9553 20-23 NN denotes GrB
T9552 17-19 IN denotes of
T9551 10-16 NN denotes number
T9550 6-9 DT denotes the
T9549 4-5 -COMMA- denotes ,
T9548 0-4 RB denotes Also
T9582 162-163 -RRB- denotes )
T9581 157-162 NN denotes S2A–C
R6788 T9551 T9550 arg1Of number,the
R6789 T9551 T9552 arg1Of number,of
R6790 T9551 T9568 arg1Of number,were
R6791 T9551 T9570 arg2Of number,altered
R6792 T9553 T9554 arg1Of GrB,and
R6793 T9555 T9554 arg2Of IFNγ,and
R6794 T9558 T9553 arg1Of cells,GrB
R6795 T9558 T9555 arg1Of cells,IFNγ
R6796 T9558 T9556 arg1Of cells,CD8+
R6797 T9558 T9557 arg1Of cells,T
R6798 T9558 T9561 arg1Of cells,as
R6799 T9561 T9552 arg2Of as,of
R6800 T9561 T9559 arg1Of as,as
R6801 T9561 T9560 arg1Of as,well
R6802 T9564 T9561 arg2Of levels,as
R6803 T9564 T9562 arg1Of levels,IFNγ
R6804 T9564 T9563 arg1Of levels,expression
R6805 T9564 T9565 arg1Of levels,in
R6806 T9567 T9565 arg2Of lungs,in
R6807 T9567 T9566 arg1Of lungs,the
R6808 T9570 T9548 arg1Of altered,Also
R6809 T9570 T9549 arg1Of altered,","
R6810 T9570 T9568 arg2Of altered,were
R6811 T9570 T9569 arg1Of altered,not
R6812 T9573 T9570 arg1Of absence,altered
R6813 T9573 T9571 arg2Of absence,by
R6814 T9573 T9572 arg1Of absence,the
R6815 T9573 T9574 arg1Of absence,of
R6816 T9573 T9576 arg1Of absence,in
R6817 T9575 T9574 arg2Of A20,of
R6818 T9578 T9576 arg2Of cells,in
R6819 T9578 T9577 arg1Of cells,myeloid
R6820 T9578 T9579 arg1Of cells,(
R6821 T9581 T9579 arg2Of S2A–C,(
R6822 T9581 T9580 arg1Of S2A–C,figure
R6823 T9582 T9579 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8807 20-23 Protein denotes GrB

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11141 33-36 http://www.uniprot.org/uniprot/P10966 denotes CD8
T11136 33-36 http://www.uniprot.org/uniprot/P01732 denotes CD8
T11121 128-131 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-CC

Id Subject Object Predicate Lexical cue
T8874 143-148 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T8873 40-45 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T8738 0-164 Sentence denotes Also, the number of GrB and IFNγ CD8+ T cells as well as IFNγ expression levels in the lungs were not altered by the absence of A20 in myeloid cells (figure S2A–C).
T136 0-164 Sentence denotes Also, the number of GrB and IFNγ CD8+ T cells as well as IFNγ expression levels in the lungs were not altered by the absence of A20 in myeloid cells (figure S2A–C).

simple1

Id Subject Object Predicate Lexical cue
T8919 20-23 Protein denotes GrB

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11373 20-23 Protein denotes GrB

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11159 20-23 Protein denotes GrB

DLUT931

Id Subject Object Predicate Lexical cue
T11189 20-23 Protein denotes GrB

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T11428 28-36 Protein denotes IFNγ CD8
T11407 57-61 Protein denotes IFNγ
T11503 57-92 Gene_expression denotes IFNγ expression levels in the lungs
T11499 28-32 Protein denotes IFNγ
T11481 125-131 Protein denotes of A20
T11467 38-45 Entity denotes T cells
T11461 135-148 Entity denotes myeloid cells
T11445 20-23 Protein denotes GrB
R8458 T11407 T11503 themeOf IFNγ,IFNγ expression levels in the lungs

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10687 163-164 . denotes .
T10686 162-163 -RRB- denotes )
T10685 161-162 NNP denotes C
T10684 157-160 NNP denotes S2A
T10683 150-156 NN denotes figure
T10682 149-150 -LRB- denotes (
T10681 143-148 NNS denotes cells
T10680 135-142 JJ denotes myeloid
T10679 132-134 IN denotes in
T10678 128-131 NNP denotes A20
T10677 125-127 IN denotes of
T10676 117-124 NN denotes absence
T10675 113-116 DT denotes the
T10674 110-112 IN denotes by
T10673 102-109 VBN denotes altered
T10672 98-101 RB denotes not
T10671 93-97 VBD denotes were
T10670 87-92 NNS denotes lungs
T10669 83-86 DT denotes the
T10668 80-82 IN denotes in
T10667 73-79 NNS denotes levels
T10666 62-72 NN denotes expression
T10665 57-61 NNP denotes IFNγ
T10664 54-56 IN denotes as
T10663 49-53 RB denotes well
T10662 46-48 RB denotes as
T10661 40-45 NNS denotes cells
T10660 38-39 NNP denotes T
T10659 36-37 VBD denotes +
T10658 33-36 NNP denotes CD8
T10657 28-32 NNP denotes IFNγ
T10656 24-27 CC denotes and
T10655 20-23 NNP denotes GrB
T10654 17-19 IN denotes of
T10653 10-16 NN denotes number
T10652 6-9 DT denotes the
T10651 4-5 , denotes ,
T10650 0-4 RB denotes Also
R7872 T10657 T10658 compound IFNγ,CD8
R7875 T10658 T10655 conj CD8,GrB
R7883 T10659 T10673 ccomp +,altered
R7887 T10660 T10661 compound T,cells
R7892 T10661 T10659 dobj cells,+
R7896 T10662 T10664 advmod as,as
R7904 T10663 T10664 advmod well,as
R7905 T10650 T10673 advmod Also,altered
R7906 T10651 T10673 punct ",",altered
R7907 T10652 T10653 det the,number
R7908 T10653 T10659 nsubj number,+
R7909 T10664 T10661 cc as,cells
R7910 T10654 T10653 prep of,number
R7911 T10655 T10654 pobj GrB,of
R7912 T10656 T10655 cc and,GrB
R7913 T10665 T10667 compound IFNγ,levels
R7914 T10666 T10667 compound expression,levels
R7915 T10667 T10661 conj levels,cells
R7916 T10668 T10667 prep in,levels
R7920 T10669 T10670 det the,lungs
R7924 T10670 T10668 pobj lungs,in
R7928 T10671 T10673 auxpass were,altered
R7932 T10672 T10673 neg not,altered
R7936 T10673 T10673 ROOT altered,altered
R7941 T10674 T10673 agent by,altered
R7945 T10675 T10676 det the,absence
R7952 T10676 T10674 pobj absence,by
R7957 T10677 T10676 prep of,absence
R7961 T10678 T10677 pobj A20,of
R7965 T10679 T10676 prep in,absence
R7969 T10680 T10681 amod myeloid,cells
R7974 T10681 T10679 pobj cells,in
R7978 T10682 T10685 punct (,C
R7982 T10683 T10685 nsubj figure,C
R7987 T10684 T10685 dep S2A,C
R7991 T10685 T10673 npadvmod C,altered
R7995 T10686 T10685 punct ),C
R7996 T10687 T10673 punct .,altered

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11279 102-109 Regulation denotes altered
T11278 62-72 Gene_expression denotes expression
T11277 57-61 Protein denotes IFNγ
T11276 28-36 Protein denotes IFNγ CD8
T11275 20-23 Protein denotes GrB
R8418 T11277 T11278 themeOf IFNγ,expression
R8419 T11278 T11279 themeOf expression,altered

testone

Id Subject Object Predicate Lexical cue
T8632 117-124 Negative_regulation denotes absence
T8631 102-109 Regulation denotes altered
T8630 62-72 Gene_expression denotes expression
T8610 20-23 Protein denotes GrB
R6097 T8630 T8631 themeOf expression,altered
R6098 T8632 T8631 causeOf absence,altered