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PMC:3291650 / 20646-20935 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T8681 113-118 Protein denotes F4/80
T8680 34-39 Protein denotes MIP-2
T8679 27-29 Protein denotes KC
T8652 113-118 Protein denotes F4/80
T8651 34-39 Protein denotes MIP-2
T8650 27-29 Protein denotes KC

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9352 287-288 -RRB- denotes )
T9351 285-287 NN denotes 3D
T9350 278-284 NN denotes figure
T9349 277-278 -LRB- denotes (
T9348 269-276 NN denotes animals
T9347 261-268 NN denotes control
T9346 258-260 TO denotes to
T9345 249-257 VB denotes compared
T9344 244-248 NN denotes mice
T9343 233-243 NN denotes A20myel-KO
T9342 230-232 IN denotes in
T9341 220-229 NN denotes infection
T9340 209-219 IN denotes throughout
T9339 202-208 JJ denotes higher
T9338 194-201 RB denotes clearly
T9337 190-193 VB denotes was
T9336 180-189 NN denotes infection
T9335 176-179 NN denotes IAV
T9334 171-175 IN denotes upon
T9333 164-170 NN denotes spaces
T9332 148-163 JJ denotes bronchoalveolar
T9331 144-147 DT denotes the
T9330 141-143 IN denotes in
T9329 131-140 VB denotes recruited
T9328 126-130 VB denotes were
T9327 121-125 WDT denotes that
T9326 119-120 -RRB- denotes )
T9325 113-119 NN denotes F4/80−
T9324 107-112 JJ denotes Ly6G+
T9323 101-106 JJ denotes Ly6C+
T9322 94-100 JJ denotes CD11b+
T9321 93-94 -LRB- denotes (
T9320 81-92 NN denotes neutrophils
T9319 78-80 IN denotes of
T9318 71-77 NN denotes number
T9317 67-70 DT denotes the
T9316 65-66 -COMMA- denotes ,
T9315 61-65 NN denotes mice
T9314 50-60 NN denotes A20myel-KO
T9313 47-49 IN denotes in
T9312 40-46 NN denotes levels
T9311 34-39 NN denotes MIP-2
T9310 30-33 CC denotes and
T9309 27-29 NN denotes KC
T9308 20-26 JJ denotes higher
T9307 16-19 DT denotes the
T9306 11-15 IN denotes with
T9305 0-10 JJ denotes Consistent
R6533 T9305 T9306 arg1Of Consistent,with
R6534 T9309 T9310 arg1Of KC,and
R6535 T9311 T9310 arg2Of MIP-2,and
R6536 T9312 T9306 arg2Of levels,with
R6537 T9312 T9307 arg1Of levels,the
R6538 T9312 T9308 arg1Of levels,higher
R6539 T9312 T9309 arg1Of levels,KC
R6540 T9312 T9311 arg1Of levels,MIP-2
R6541 T9312 T9313 arg1Of levels,in
R6542 T9315 T9313 arg2Of mice,in
R6543 T9315 T9314 arg1Of mice,A20myel-KO
R6544 T9318 T9317 arg1Of number,the
R6545 T9318 T9319 arg1Of number,of
R6546 T9318 T9337 arg1Of number,was
R6547 T9318 T9339 arg1Of number,higher
R6548 T9320 T9319 arg2Of neutrophils,of
R6549 T9320 T9321 arg1Of neutrophils,(
R6550 T9320 T9327 arg1Of neutrophils,that
R6551 T9320 T9328 arg1Of neutrophils,were
R6552 T9320 T9329 arg2Of neutrophils,recruited
R6553 T9325 T9321 arg2Of F4/80−,(
R6554 T9325 T9322 arg1Of F4/80−,CD11b+
R6555 T9325 T9323 arg1Of F4/80−,Ly6C+
R6556 T9325 T9324 arg1Of F4/80−,Ly6G+
R6557 T9326 T9321 arg3Of ),(
R6558 T9329 T9328 arg2Of recruited,were
R6559 T9329 T9330 arg1Of recruited,in
R6560 T9333 T9330 arg2Of spaces,in
R6561 T9333 T9331 arg1Of spaces,the
R6562 T9333 T9332 arg1Of spaces,bronchoalveolar
R6563 T9333 T9334 arg1Of spaces,upon
R6564 T9336 T9334 arg2Of infection,upon
R6565 T9336 T9335 arg1Of infection,IAV
R6566 T9337 T9305 arg1Of was,Consistent
R6567 T9337 T9316 arg1Of was,","
R6568 T9337 T9340 arg1Of was,throughout
R6569 T9337 T9342 arg1Of was,in
R6570 T9337 T9345 arg1Of was,compared
R6571 T9339 T9337 arg2Of higher,was
R6572 T9339 T9338 arg1Of higher,clearly
R6573 T9341 T9340 arg2Of infection,throughout
R6574 T9344 T9342 arg2Of mice,in
R6575 T9344 T9343 arg1Of mice,A20myel-KO
R6576 T9346 T9345 arg2Of to,compared
R6577 T9348 T9346 arg2Of animals,to
R6578 T9348 T9347 arg1Of animals,control
R6579 T9348 T9349 arg1Of animals,(
R6580 T9351 T9349 arg2Of 3D,(
R6581 T9351 T9350 arg1Of 3D,figure
R6582 T9352 T9349 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8802 113-118 Protein denotes F4/80
T8801 34-39 Protein denotes MIP-2
T8800 27-29 Protein denotes KC

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11127 34-39 http://www.uniprot.org/uniprot/P10889 denotes MIP-2

sentences

Id Subject Object Predicate Lexical cue
T8732 0-289 Sentence denotes Consistent with the higher KC and MIP-2 levels in A20myel-KO mice, the number of neutrophils (CD11b+ Ly6C+ Ly6G+ F4/80−) that were recruited in the bronchoalveolar spaces upon IAV infection was clearly higher throughout infection in A20myel-KO mice compared to control animals (figure 3D).
T130 0-289 Sentence denotes Consistent with the higher KC and MIP-2 levels in A20myel-KO mice, the number of neutrophils (CD11b+ Ly6C+ Ly6G+ F4/80−) that were recruited in the bronchoalveolar spaces upon IAV infection was clearly higher throughout infection in A20myel-KO mice compared to control animals (figure 3D).

simple1

Id Subject Object Predicate Lexical cue
T8914 113-118 Protein denotes F4/80
T8913 34-39 Protein denotes MIP-2
T8912 27-29 Protein denotes KC

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11383 131-140 Binding denotes recruited
T11368 27-29 Protein denotes KC
T11367 113-118 Protein denotes F4/80
T11366 34-39 Protein denotes MIP-2
R8443 T11367 T11383 themeOf F4/80,recruited

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11167 20-26 Positive_regulation denotes higher
T11154 27-29 Protein denotes KC
T11153 113-118 Protein denotes F4/80
T11152 34-39 Protein denotes MIP-2
R8360 T11154 T11167 themeOf KC,higher

DLUT931

Id Subject Object Predicate Lexical cue
T11196 20-26 Positive_regulation denotes higher
T11184 27-29 Protein denotes KC
T11183 113-118 Protein denotes F4/80
T11182 34-39 Protein denotes MIP-2
R8376 T11184 T11196 themeOf KC,higher

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T11418 27-29 Protein denotes KC
T11411 34-39 Protein denotes MIP-2
T11393 244-248 Protein denotes mice
T11495 50-65 Protein denotes A20myel-KO mice
T11465 78-120 Entity denotes of neutrophils (CD11b+ Ly6C+ Ly6G+ F4/80−)
T11453 113-118 Protein denotes F4/80

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10439 288-289 . denotes .
T10438 287-288 -RRB- denotes )
T10437 285-287 NNP denotes 3D
T10436 278-284 NN denotes figure
T10435 277-278 -LRB- denotes (
T10434 269-276 NNS denotes animals
T10433 261-268 VB denotes control
T10432 258-260 TO denotes to
T10431 249-257 VBN denotes compared
T10430 244-248 NNS denotes mice
T10429 233-243 JJ denotes A20myel-KO
T10428 230-232 IN denotes in
T10427 220-229 NN denotes infection
T10426 209-219 IN denotes throughout
T10425 202-208 JJR denotes higher
T10424 194-201 RB denotes clearly
T10423 190-193 VBD denotes was
T10422 180-189 NN denotes infection
T10421 176-179 NNP denotes IAV
T10420 171-175 IN denotes upon
T10419 164-170 NNS denotes spaces
T10418 148-163 NN denotes bronchoalveolar
T10417 144-147 DT denotes the
T10416 141-143 IN denotes in
T10415 131-140 VBN denotes recruited
T10414 126-130 VBD denotes were
T10413 121-125 WDT denotes that
T10412 119-120 -RRB- denotes )
T10411 118-119 NNP denotes −
T10410 113-118 NNP denotes F4/80
T10409 111-112 NNP denotes +
T10408 107-111 NNP denotes Ly6G
T10407 105-106 NNP denotes +
T10406 101-105 NNP denotes Ly6C
T10405 99-100 NN denotes +
T10404 94-99 JJ denotes CD11b
T10403 93-94 -LRB- denotes (
T10402 81-92 NNS denotes neutrophils
T10401 78-80 IN denotes of
T10400 71-77 NN denotes number
T10399 67-70 DT denotes the
T10398 65-66 , denotes ,
T10397 61-65 NNS denotes mice
T10396 50-60 JJ denotes A20myel-KO
T10395 47-49 IN denotes in
T10394 40-46 NNS denotes levels
T10393 34-39 NNP denotes MIP-2
T10392 30-33 CC denotes and
T10391 27-29 NNP denotes KC
T10390 20-26 JJR denotes higher
T10389 16-19 DT denotes the
T10388 11-15 IN denotes with
T10387 0-10 JJ denotes Consistent
R7635 T10387 T10394 amod Consistent,levels
R7636 T10388 T10387 prep with,Consistent
R7637 T10389 T10391 det the,KC
R7638 T10390 T10391 amod higher,KC
R7639 T10391 T10388 pobj KC,with
R7640 T10392 T10391 cc and,KC
R7641 T10393 T10394 compound MIP-2,levels
R7642 T10394 T10423 nsubj levels,was
R7643 T10395 T10394 prep in,levels
R7644 T10396 T10397 amod A20myel-KO,mice
R7645 T10397 T10395 pobj mice,in
R7646 T10398 T10423 punct ",",was
R7647 T10399 T10400 det the,number
R7648 T10400 T10423 nsubj number,was
R7649 T10401 T10400 prep of,number
R7650 T10402 T10401 pobj neutrophils,of
R7651 T10403 T10402 punct (,neutrophils
R7652 T10404 T10405 amod CD11b,+
R7653 T10405 T10411 compound +,−
R7654 T10406 T10411 compound Ly6C,−
R7656 T10407 T10411 compound +,−
R7660 T10408 T10411 compound Ly6G,−
R7664 T10409 T10411 compound +,−
R7668 T10410 T10411 compound F4/80,−
R7672 T10411 T10402 appos −,neutrophils
R7676 T10412 T10402 punct ),neutrophils
R7681 T10413 T10415 nsubjpass that,recruited
R7685 T10414 T10415 auxpass were,recruited
R7689 T10415 T10400 relcl recruited,number
R7692 T10416 T10415 prep in,recruited
R7693 T10417 T10419 det the,spaces
R7695 T10418 T10419 compound bronchoalveolar,spaces
R7704 T10419 T10416 pobj spaces,in
R7707 T10420 T10415 prep upon,recruited
R7709 T10421 T10422 compound IAV,infection
R7713 T10422 T10420 pobj infection,upon
R7717 T10423 T10423 ROOT was,was
R7721 T10424 T10423 advmod clearly,was
R7725 T10425 T10423 acomp higher,was
R7730 T10426 T10423 prep throughout,was
R7734 T10427 T10426 pobj infection,throughout
R7738 T10428 T10427 prep in,infection
R7742 T10429 T10430 amod A20myel-KO,mice
R7745 T10430 T10428 pobj mice,in
R7753 T10431 T10423 prep compared,was
R7758 T10432 T10433 aux to,control
R7760 T10433 T10431 xcomp control,compared
R7761 T10434 T10433 dobj animals,control
R7763 T10435 T10434 punct (,animals
R7767 T10436 T10437 compound figure,3D
R7772 T10437 T10434 appos 3D,animals
R7776 T10438 T10434 punct ),animals
R7780 T10439 T10423 punct .,was

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11253 101-106 Protein denotes Ly6C+
T11252 94-99 Protein denotes CD11b
T11251 34-39 Protein denotes MIP-2
T11250 27-29 Protein denotes KC

testone

Id Subject Object Predicate Lexical cue
T8626 20-26 Positive_regulation denotes higher
T8605 113-118 Protein denotes F4/80
T8604 34-39 Protein denotes MIP-2
T8603 27-29 Protein denotes KC
R6086 T8603 T8626 themeOf KC,higher
R6087 T8604 T8626 themeOf MIP-2,higher