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PMC:3291650 / 17103-17374 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T7692 196-203 Negative_regulation denotes lacking
T7691 142-147 Protein denotes cxcl1
T7690 138-140 Protein denotes KC
T7689 128-132 Protein denotes ccl2
T7688 121-126 Protein denotes MCP-1
T7687 96-101 Protein denotes IFNα4
T7686 87-91 Protein denotes IFNβ
T7685 67-70 Protein denotes TNF
T7684 58-62 Protein denotes IL-6
T7683 15-24 Gene_expression denotes secretion
T7682 0-10 Gene_expression denotes Expression
T7671 142-147 Protein denotes cxcl1
T7670 138-140 Protein denotes KC
T7669 128-132 Protein denotes ccl2
T7668 121-126 Protein denotes MCP-1
T7667 96-101 Protein denotes IFNα4
T7666 87-91 Protein denotes IFNβ
T7665 67-70 Protein denotes TNF
T7664 58-62 Protein denotes IL-6
R5397 T7684 T7683 themeOf IL-6,secretion
R5398 T7684 T7682 themeOf IL-6,Expression
R5399 T7685 T7682 themeOf TNF,Expression
R5400 T7685 T7683 themeOf TNF,secretion
R5401 T7686 T7682 themeOf IFNβ,Expression
R5402 T7686 T7683 themeOf IFNβ,secretion
R5403 T7687 T7682 themeOf IFNα4,Expression
R5404 T7687 T7683 themeOf IFNα4,secretion
R5405 T7688 T7683 themeOf MCP-1,secretion
R5406 T7688 T7682 themeOf MCP-1,Expression
R5407 T7689 T7688 equivalentTo ccl2,MCP-1
R5408 T7690 T7682 themeOf KC,Expression
R5409 T7690 T7683 themeOf KC,secretion
R5410 T7691 T7688 equivalentTo cxcl1,MCP-1
R5411 T7691 T7690 equivalentTo cxcl1,KC

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8031 269-270 -RRB- denotes )
T8030 267-269 NN denotes S1
T8029 260-266 NN denotes figure
T8028 256-259 CC denotes and
T8027 253-255 NN denotes 2C
T8026 246-252 NN denotes figure
T8010 149-152 VB denotes was
T8009 147-148 -RRB- denotes )
T8008 142-147 NN denotes cxcl1
T8007 141-142 -LRB- denotes (
T8006 138-140 NN denotes KC
T8005 134-137 CC denotes and
T8004 132-133 -RRB- denotes )
T8003 128-132 NN denotes ccl2
T8002 127-128 -LRB- denotes (
T8001 121-126 NN denotes MCP-1
T8000 110-120 NN denotes chemokines
T7999 106-109 DT denotes the
T7998 102-105 CC denotes and
T7997 96-101 NN denotes IFNα4
T7996 92-95 CC denotes and
T7995 87-91 NN denotes IFNβ
T7994 83-86 NN denotes IFN
T7993 76-82 NN denotes type-I
T7992 72-75 DT denotes the
T7991 70-71 -COMMA- denotes ,
T7990 67-70 NN denotes TNF
T7989 63-66 CC denotes and
T7988 58-62 NN denotes IL-6
T7987 48-57 NN denotes cytokines
T7986 32-47 JJ denotes proinflammatory
T7985 28-31 DT denotes the
T7984 25-27 IN denotes of
T7983 15-24 NN denotes secretion
T7982 11-14 CC denotes and
T7981 0-10 NN denotes Expression
T8025 245-246 -LRB- denotes (
T8024 239-244 NN denotes cells
T8023 234-238 NN denotes type
T8022 229-233 JJ denotes wild
T8021 220-228 JJ denotes infected
T8020 217-219 TO denotes to
T8019 208-216 VB denotes compared
T8018 204-207 NN denotes A20
T8017 196-203 VB denotes lacking
T8016 190-195 NN denotes cells
T8015 181-189 JJ denotes infected
T8014 177-180 NN denotes IAV
T8013 174-176 IN denotes in
T8012 167-173 JJ denotes higher
T8011 153-166 RB denotes significantly
R5622 T7981 T7982 arg1Of Expression,and
R5623 T7982 T7984 arg1Of and,of
R5624 T7982 T8005 arg1Of and,and
R5625 T7983 T7982 arg2Of secretion,and
R5626 T7987 T7985 arg1Of cytokines,the
R5627 T7987 T7986 arg1Of cytokines,proinflammatory
R5628 T7988 T7989 arg1Of IL-6,and
R5629 T7989 T7984 arg2Of and,of
R5630 T7989 T7987 arg1Of and,cytokines
R5631 T7989 T7991 arg1Of and,","
R5632 T7990 T7989 arg2Of TNF,and
R5633 T7995 T7996 arg1Of IFNβ,and
R5634 T7996 T7992 arg1Of and,the
R5635 T7996 T7993 arg1Of and,type-I
R5636 T7996 T7994 arg1Of and,IFN
R5637 T7996 T7998 arg1Of and,and
R5638 T7997 T7996 arg2Of IFNα4,and
R5639 T7998 T7991 arg2Of and,","
R5640 T8001 T7998 arg2Of MCP-1,and
R5641 T8001 T7999 arg1Of MCP-1,the
R5642 T8001 T8000 arg1Of MCP-1,chemokines
R5643 T8001 T8002 arg1Of MCP-1,(
R5644 T8003 T8002 arg2Of ccl2,(
R5645 T8004 T8002 arg3Of ),(
R5646 T8005 T8010 arg1Of and,was
R5647 T8005 T8012 arg1Of and,higher
R5648 T8006 T8005 arg2Of KC,and
R5649 T8006 T8007 arg1Of KC,(
R5650 T8008 T8007 arg2Of cxcl1,(
R5651 T8009 T8007 arg3Of ),(
R5652 T8012 T8010 arg2Of higher,was
R5653 T8012 T8011 arg1Of higher,significantly
R5654 T8012 T8013 arg1Of higher,in
R5655 T8016 T8013 arg2Of cells,in
R5656 T8016 T8014 arg1Of cells,IAV
R5657 T8016 T8015 arg1Of cells,infected
R5658 T8016 T8017 arg1Of cells,lacking
R5659 T8017 T8019 arg1Of lacking,compared
R5660 T8018 T8017 arg2Of A20,lacking
R5661 T8020 T8019 arg2Of to,compared
R5662 T8024 T8020 arg2Of cells,to
R5663 T8024 T8021 arg1Of cells,infected
R5664 T8024 T8022 arg1Of cells,wild
R5665 T8024 T8023 arg1Of cells,type
R5666 T8024 T8025 arg1Of cells,(
R5667 T8027 T8026 arg1Of 2C,figure
R5668 T8027 T8028 arg1Of 2C,and
R5669 T8028 T8025 arg2Of and,(
R5670 T8030 T8028 arg2Of S1,and
R5671 T8030 T8029 arg1Of S1,figure
R5672 T8031 T8025 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7760 87-91 Protein denotes IFNβ
T7759 67-70 Protein denotes TNF
T7758 58-62 Protein denotes IL-6
T7765 142-147 Protein denotes cxcl1
T7764 138-140 Protein denotes KC
T7763 128-132 Protein denotes ccl2
T7762 121-126 Protein denotes MCP-1
T7761 96-101 Protein denotes IFNα4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8354 67-70 http://www.uniprot.org/uniprot/P01375 denotes TNF
T8352 58-62 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T8348 204-207 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-BP

Id Subject Object Predicate Lexical cue
T7784 121-124 http://purl.obolibrary.org/obo/GO_0004298 denotes MCP
T7783 15-24 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

GO-MF

Id Subject Object Predicate Lexical cue
T7788 121-124 http://purl.obolibrary.org/obo/GO_0004298 denotes MCP
T7787 58-62 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

GO-CC

Id Subject Object Predicate Lexical cue
T7794 239-244 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7793 190-195 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7705 0-271 Sentence denotes Expression and secretion of the proinflammatory cytokines IL-6 and TNF, the type-I IFN IFNβ and IFNα4 and the chemokines MCP-1 (ccl2) and KC (cxcl1) was significantly higher in IAV infected cells lacking A20 compared to infected wild type cells (figure 2C and figure S1).
T108 0-271 Sentence denotes Expression and secretion of the proinflammatory cytokines IL-6 and TNF, the type-I IFN IFNβ and IFNα4 and the chemokines MCP-1 (ccl2) and KC (cxcl1) was significantly higher in IAV infected cells lacking A20 compared to infected wild type cells (figure 2C and figure S1).

simple1

Id Subject Object Predicate Lexical cue
T7807 142-147 Protein denotes cxcl1
T7806 138-140 Protein denotes KC
T7805 128-132 Protein denotes ccl2
T7804 121-126 Protein denotes MCP-1
T7803 96-101 Protein denotes IFNα4
T7802 87-91 Protein denotes IFNβ
T7801 67-70 Protein denotes TNF
T7800 58-62 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8507 0-10 Gene_expression denotes Expression
T8506 15-24 Localization denotes secretion
T8500 121-126 Protein denotes MCP-1
T8499 96-101 Protein denotes IFNα4
T8498 87-91 Protein denotes IFNβ
T8497 67-70 Protein denotes TNF
T8496 58-62 Protein denotes IL-6
T8495 142-147 Protein denotes cxcl1
T8494 138-140 Protein denotes KC
T8493 128-132 Protein denotes ccl2
R6057 T8494 T8506 themeOf KC,secretion
R6059 T8495 T8506 themeOf cxcl1,secretion
R6061 T8496 T8506 themeOf IL-6,secretion
R6063 T8497 T8506 themeOf TNF,secretion
R6069 T8500 T8506 themeOf MCP-1,secretion
R6055 T8493 T8506 themeOf ccl2,secretion
R6056 T8493 T8507 themeOf ccl2,Expression
R6058 T8494 T8507 themeOf KC,Expression
R6060 T8495 T8507 themeOf cxcl1,Expression
R6062 T8496 T8507 themeOf IL-6,Expression
R6064 T8497 T8507 themeOf TNF,Expression
R6065 T8498 T8506 themeOf IFNβ,secretion
R6066 T8498 T8507 themeOf IFNβ,Expression
R6067 T8499 T8506 themeOf IFNα4,secretion
R6068 T8499 T8507 themeOf IFNα4,Expression
R6070 T8500 T8507 themeOf MCP-1,Expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8373 0-10 Gene_expression denotes Expression
T8372 15-24 Gene_expression denotes secretion
T8367 121-126 Protein denotes MCP-1
T8366 96-101 Protein denotes IFNα4
T8365 87-91 Protein denotes IFNβ
T8364 67-70 Protein denotes TNF
T8363 58-62 Protein denotes IL-6
T8362 142-147 Protein denotes cxcl1
T8361 138-140 Protein denotes KC
T8360 128-132 Protein denotes ccl2
R5971 T8360 T8372 themeOf ccl2,secretion
R5972 T8360 T8373 themeOf ccl2,Expression
R5973 T8361 T8372 themeOf KC,secretion
R5974 T8361 T8373 themeOf KC,Expression
R5975 T8362 T8372 themeOf cxcl1,secretion
R5976 T8362 T8373 themeOf cxcl1,Expression
R5977 T8363 T8372 themeOf IL-6,secretion
R5978 T8363 T8373 themeOf IL-6,Expression
R5979 T8364 T8373 themeOf TNF,Expression
R5980 T8366 T8372 themeOf IFNα4,secretion
R5981 T8367 T8372 themeOf MCP-1,secretion
R5982 T8367 T8373 themeOf MCP-1,Expression

DLUT931

Id Subject Object Predicate Lexical cue
T8393 15-24 Localization denotes secretion
T8392 0-10 Gene_expression denotes Expression
T8386 121-126 Protein denotes MCP-1
T8385 96-101 Protein denotes IFNα4
T8384 87-91 Protein denotes IFNβ
T8383 67-70 Protein denotes TNF
T8382 58-62 Protein denotes IL-6
T8381 142-147 Protein denotes cxcl1
T8380 138-140 Protein denotes KC
T8379 128-132 Protein denotes ccl2
R5990 T8379 T8392 themeOf ccl2,Expression
R5991 T8379 T8393 themeOf ccl2,secretion
R5992 T8380 T8392 themeOf KC,Expression
R5993 T8380 T8393 themeOf KC,secretion
R5994 T8381 T8392 themeOf cxcl1,Expression
R5995 T8381 T8393 themeOf cxcl1,secretion
R5996 T8382 T8392 themeOf IL-6,Expression
R5997 T8382 T8393 themeOf IL-6,secretion
R5998 T8383 T8392 themeOf TNF,Expression
R5999 T8383 T8393 themeOf TNF,secretion
R6000 T8384 T8392 themeOf IFNβ,Expression
R6001 T8385 T8392 themeOf IFNα4,Expression
R6002 T8386 T8392 themeOf MCP-1,Expression
R6003 T8386 T8393 themeOf MCP-1,secretion

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8528 83-91 Protein denotes IFN IFNβ
T8525 260-269 Entity denotes figure S1
T8522 67-71 Protein denotes TNF,
T8518 83-86 Protein denotes IFN
T8517 204-207 Protein denotes A20
T8515 48-57 Protein denotes cytokines
T8512 106-126 Protein denotes the chemokines MCP-1
T8549 128-132 Protein denotes ccl2
T8547 142-147 Protein denotes cxcl1
T8542 106-126 Protein denotes the chemokines MCP-1
T8540 96-101 Protein denotes IFNα4
T8537 58-62 Protein denotes IL-6
T8535 138-148 Protein denotes KC (cxcl1)
T8534 217-270 Entity denotes to infected wild type cells (figure 2C and figure S1)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8307 270-271 . denotes .
T8306 269-270 -RRB- denotes )
T8305 267-269 CD denotes S1
T8304 260-266 NN denotes figure
T8303 256-259 CC denotes and
T8302 253-255 NN denotes 2C
T8301 246-252 NN denotes figure
T8300 245-246 -LRB- denotes (
T8299 239-244 NNS denotes cells
T8298 234-238 NN denotes type
T8297 229-233 JJ denotes wild
T8296 220-228 JJ denotes infected
T8295 217-219 TO denotes to
T8294 208-216 VBN denotes compared
T8293 204-207 NNP denotes A20
T8292 196-203 VBG denotes lacking
T8291 190-195 NNS denotes cells
T8290 181-189 JJ denotes infected
T8289 177-180 NNP denotes IAV
T8288 174-176 IN denotes in
T8287 167-173 JJR denotes higher
T8286 153-166 RB denotes significantly
T8285 149-152 VBD denotes was
T8284 147-148 -RRB- denotes )
T8283 142-147 CD denotes cxcl1
T8282 141-142 -LRB- denotes (
T8281 138-140 NNP denotes KC
T8280 134-137 CC denotes and
T8279 132-133 -RRB- denotes )
T8278 128-132 CD denotes ccl2
T8277 127-128 -LRB- denotes (
T8276 121-126 NNP denotes MCP-1
T8275 110-120 NNS denotes chemokines
T8274 106-109 DT denotes the
T8273 102-105 CC denotes and
T8272 96-101 NNP denotes IFNα4
T8271 92-95 CC denotes and
T8270 87-91 NNP denotes IFNβ
T8269 83-86 NNP denotes IFN
T8268 76-82 NNP denotes type-I
T8267 72-75 DT denotes the
T8266 70-71 , denotes ,
T8265 67-70 NNP denotes TNF
T8264 63-66 CC denotes and
T8263 58-62 NNP denotes IL-6
T8262 48-57 NNS denotes cytokines
T8261 32-47 JJ denotes proinflammatory
T8260 28-31 DT denotes the
T8259 25-27 IN denotes of
T8258 15-24 NN denotes secretion
T8257 11-14 CC denotes and
T8256 0-10 NN denotes Expression
R5883 T8256 T8285 nsubj Expression,was
R5884 T8257 T8256 cc and,Expression
R5885 T8258 T8256 conj secretion,Expression
R5886 T8259 T8258 prep of,secretion
R5887 T8260 T8262 det the,cytokines
R5888 T8261 T8262 amod proinflammatory,cytokines
R5889 T8262 T8263 compound cytokines,IL-6
R5890 T8263 T8259 pobj IL-6,of
R5891 T8264 T8263 cc and,IL-6
R5892 T8265 T8263 conj TNF,IL-6
R5893 T8266 T8265 punct ",",TNF
R5894 T8267 T8270 det the,IFNβ
R5895 T8268 T8270 compound type-I,IFNβ
R5896 T8269 T8270 compound IFN,IFNβ
R5897 T8270 T8265 conj IFNβ,TNF
R5898 T8271 T8270 cc and,IFNβ
R5899 T8272 T8270 conj IFNα4,IFNβ
R5900 T8273 T8272 cc and,IFNα4
R5901 T8274 T8275 det the,chemokines
R5902 T8275 T8272 conj chemokines,IFNα4
R5903 T8276 T8285 nsubj MCP-1,was
R5904 T8277 T8278 punct (,ccl2
R5905 T8278 T8276 parataxis ccl2,MCP-1
R5906 T8279 T8278 punct ),ccl2
R5907 T8280 T8276 cc and,MCP-1
R5908 T8281 T8276 conj KC,MCP-1
R5909 T8282 T8283 punct (,cxcl1
R5910 T8283 T8276 appos cxcl1,MCP-1
R5911 T8284 T8276 punct ),MCP-1
R5912 T8285 T8285 ROOT was,was
R5913 T8286 T8287 advmod significantly,higher
R5914 T8287 T8285 acomp higher,was
R5915 T8288 T8285 prep in,was
R5916 T8289 T8291 nmod IAV,cells
R5917 T8290 T8291 amod infected,cells
R5918 T8291 T8288 pobj cells,in
R5919 T8292 T8291 acl lacking,cells
R5920 T8293 T8292 dobj A20,lacking
R5921 T8294 T8285 prep compared,was
R5922 T8295 T8294 prep to,compared
R5923 T8296 T8299 amod infected,cells
R5924 T8297 T8299 amod wild,cells
R5925 T8298 T8299 compound type,cells
R5926 T8299 T8295 pobj cells,to
R5927 T8300 T8301 punct (,figure
R5928 T8301 T8299 parataxis figure,cells
R5929 T8302 T8301 npadvmod 2C,figure
R5930 T8303 T8302 cc and,2C
R5931 T8304 T8302 conj figure,2C
R5932 T8305 T8304 nummod S1,figure
R5933 T8306 T8301 punct ),figure
R5934 T8307 T8285 punct .,was

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8446 15-24 Localization denotes secretion
T8445 15-24 Localization denotes secretion
T8444 15-24 Localization denotes secretion
T8443 0-10 Gene_expression denotes Expression
T8442 0-10 Gene_expression denotes Expression
T8441 0-10 Gene_expression denotes Expression
T8440 0-10 Gene_expression denotes Expression
T8439 0-10 Gene_expression denotes Expression
T8438 0-10 Gene_expression denotes Expression
T8437 0-10 Gene_expression denotes Expression
T8436 0-10 Gene_expression denotes Expression
T8435 142-147 Protein denotes cxcl1
T8434 138-140 Protein denotes KC
T8433 128-132 Protein denotes ccl2
T8432 110-126 Protein denotes chemokines MCP-1
T8431 96-101 Protein denotes IFNα4
T8430 76-91 Protein denotes type-I IFN IFNβ
T8429 67-70 Protein denotes TNF
T8428 48-62 Protein denotes cytokines IL-6
R6020 T8428 T8436 themeOf cytokines IL-6,Expression
R6021 T8429 T8437 themeOf TNF,Expression
R6022 T8429 T8444 themeOf TNF,secretion
R6023 T8430 T8438 themeOf type-I IFN IFNβ,Expression
R6024 T8431 T8439 themeOf IFNα4,Expression
R6025 T8432 T8440 themeOf chemokines MCP-1,Expression
R6026 T8432 T8445 themeOf chemokines MCP-1,secretion
R6027 T8433 T8441 themeOf ccl2,Expression
R6028 T8434 T8442 themeOf KC,Expression
R6029 T8434 T8446 themeOf KC,secretion
R6030 T8435 T8443 themeOf cxcl1,Expression

testone

Id Subject Object Predicate Lexical cue
T7659 196-203 Negative_regulation denotes lacking
T7658 15-24 Localization denotes secretion
T7657 0-10 Gene_expression denotes Expression
T7649 142-147 Protein denotes cxcl1
T7648 138-140 Protein denotes KC
T7647 128-132 Protein denotes ccl2
T7646 121-126 Protein denotes MCP-1
T7645 96-101 Protein denotes IFNα4
T7644 87-91 Protein denotes IFNβ
T7643 67-70 Protein denotes TNF
T7642 58-62 Protein denotes IL-6
R5383 T7642 T7658 themeOf IL-6,secretion
R5384 T7642 T7657 themeOf IL-6,Expression
R5385 T7643 T7658 themeOf TNF,secretion
R5386 T7644 T7658 themeOf IFNβ,secretion
R5387 T7645 T7658 themeOf IFNα4,secretion
R5388 T7646 T7658 themeOf MCP-1,secretion
R5389 T7647 T7646 equivalentTo ccl2,MCP-1
R5390 T7648 T7658 themeOf KC,secretion
R5391 T7649 T7646 equivalentTo cxcl1,MCP-1
R5392 T7649 T7648 equivalentTo cxcl1,KC