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PMC:3291650 / 16711-17622 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T7695 900-910 Positive_regulation denotes activation
T7694 895-899 Protein denotes IRF3
T7693 871-876 Protein denotes RIG-I
T7692 588-595 Negative_regulation denotes lacking
T7691 534-539 Protein denotes cxcl1
T7690 530-532 Protein denotes KC
T7689 520-524 Protein denotes ccl2
T7688 513-518 Protein denotes MCP-1
T7687 488-493 Protein denotes IFNα4
T7686 479-483 Protein denotes IFNβ
T7685 459-462 Protein denotes TNF
T7684 450-454 Protein denotes IL-6
T7683 407-416 Gene_expression denotes secretion
T7682 392-402 Gene_expression denotes Expression
T7673 895-899 Protein denotes IRF3
T7672 871-876 Protein denotes RIG-I
T7671 534-539 Protein denotes cxcl1
T7670 530-532 Protein denotes KC
T7669 520-524 Protein denotes ccl2
T7668 513-518 Protein denotes MCP-1
T7667 488-493 Protein denotes IFNα4
T7666 479-483 Protein denotes IFNβ
T7665 459-462 Protein denotes TNF
T7664 450-454 Protein denotes IL-6
R5397 T7684 T7683 themeOf IL-6,secretion
R5398 T7684 T7682 themeOf IL-6,Expression
R5399 T7685 T7682 themeOf TNF,Expression
R5400 T7685 T7683 themeOf TNF,secretion
R5401 T7686 T7682 themeOf IFNβ,Expression
R5402 T7686 T7683 themeOf IFNβ,secretion
R5403 T7687 T7682 themeOf IFNα4,Expression
R5404 T7687 T7683 themeOf IFNα4,secretion
R5405 T7688 T7683 themeOf MCP-1,secretion
R5406 T7688 T7682 themeOf MCP-1,Expression
R5407 T7689 T7688 equivalentTo ccl2,MCP-1
R5408 T7690 T7682 themeOf KC,Expression
R5409 T7690 T7683 themeOf KC,secretion
R5410 T7691 T7688 equivalentTo cxcl1,MCP-1
R5411 T7691 T7690 equivalentTo cxcl1,KC
R5412 T7694 T7695 themeOf IRF3,activation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8064 900-910 NN denotes activation
T8063 895-899 NN denotes IRF3
T8062 891-894 CC denotes and
T8061 885-890 NN denotes NF-κB
T8060 871-884 JJ denotes RIG-I-induced
T8059 868-870 IN denotes on
T8058 863-867 VB denotes seen
T8057 859-862 NN denotes A20
T8056 856-858 IN denotes of
T8055 849-855 NN denotes effect
T8054 838-848 JJ denotes inhibitory
T8053 834-837 DT denotes the
T8052 829-833 IN denotes with
T8051 818-828 JJ denotes consistent
T8050 816-817 -COMMA- denotes ,
T8049 805-816 NN denotes macrophages
T8048 796-804 JJ denotes alveolar
T8047 793-795 IN denotes in
T8046 782-792 NN denotes expression
T8045 777-781 NN denotes gene
T8044 767-776 JJ denotes antiviral
T8043 763-766 CC denotes and
T8042 747-762 JJ denotes proinflammatory
T8041 735-746 JJ denotes IAV-induced
T8040 725-734 VB denotes regulates
T8039 714-724 RB denotes negatively
T8038 710-713 NN denotes A20
T8037 705-709 IN denotes that
T8036 693-704 VB denotes demonstrate
T8035 685-692 NN denotes results
T8034 679-684 DT denotes these
T8033 670-678 RB denotes together
T8032 664-669 VB denotes Taken
T8031 661-662 -RRB- denotes )
T8030 659-661 NN denotes S1
T8029 652-658 NN denotes figure
T8028 648-651 CC denotes and
T8027 645-647 NN denotes 2C
T8026 638-644 NN denotes figure
T8010 541-544 VB denotes was
T8009 539-540 -RRB- denotes )
T8008 534-539 NN denotes cxcl1
T8007 533-534 -LRB- denotes (
T8006 530-532 NN denotes KC
T8005 526-529 CC denotes and
T8004 524-525 -RRB- denotes )
T8003 520-524 NN denotes ccl2
T8002 519-520 -LRB- denotes (
T8001 513-518 NN denotes MCP-1
T8000 502-512 NN denotes chemokines
T7999 498-501 DT denotes the
T7998 494-497 CC denotes and
T7997 488-493 NN denotes IFNα4
T7996 484-487 CC denotes and
T7995 479-483 NN denotes IFNβ
T7994 475-478 NN denotes IFN
T7993 468-474 NN denotes type-I
T7992 464-467 DT denotes the
T7991 462-463 -COMMA- denotes ,
T7990 459-462 NN denotes TNF
T7989 455-458 CC denotes and
T7988 450-454 NN denotes IL-6
T7987 440-449 NN denotes cytokines
T7986 424-439 JJ denotes proinflammatory
T7985 420-423 DT denotes the
T7984 417-419 IN denotes of
T7983 407-416 NN denotes secretion
T7982 403-406 CC denotes and
T7981 392-402 NN denotes Expression
T7980 386-390 NN denotes X-47
T7979 382-385 NN denotes IAV
T7978 377-381 IN denotes with
T7977 371-376 FW denotes vitro
T7976 368-370 FW denotes in
T7975 363-367 PRP denotes them
T7974 354-362 VB denotes infected
T7973 350-353 CC denotes and
T7972 338-349 NN denotes littermates
T7971 330-337 NN denotes control
T7970 326-329 CC denotes and
T7969 315-325 NN denotes A20myel-KO
T7968 312-314 IN denotes of
T7967 306-311 NN denotes lungs
T7966 301-305 IN denotes from
T7965 295-300 NN denotes cells
T7964 289-294 DT denotes these
T7963 280-288 VB denotes isolated
T7962 277-279 PRP denotes we
T7961 275-276 -COMMA- denotes ,
T7960 264-275 NN denotes macrophages
T7959 255-263 JJ denotes alveolar
T7958 252-254 IN denotes in
T7957 241-251 NN denotes expression
T7956 236-240 NN denotes gene
T7955 224-235 JJ denotes IAV-induced
T7954 215-223 VB denotes controls
T7953 206-214 RB denotes directly
T7952 202-205 NN denotes A20
T7951 194-201 IN denotes whether
T7950 189-193 VB denotes test
T7949 186-188 TO denotes To
T7948 175-184 NN denotes infection
T7947 172-174 IN denotes of
T7946 166-171 NN denotes phase
T7945 158-165 JJ denotes primary
T7944 154-157 DT denotes the
T7943 147-153 IN denotes during
T7942 142-146 NN denotes lung
T7941 138-141 DT denotes the
T7940 135-137 TO denotes to
T7939 129-134 NN denotes cells
T7938 122-128 JJ denotes immune
T7937 115-121 JJ denotes innate
T7936 104-114 VB denotes attracting
T7935 102-103 -COMMA- denotes ,
T7934 92-102 NN denotes chemokines
T7933 88-91 CC denotes and
T7932 78-87 NN denotes cytokines
T7931 75-77 IN denotes of
T7930 68-74 NN denotes source
T7929 58-67 JJ denotes important
T7928 55-57 DT denotes an
T7927 51-54 VB denotes are
T7926 39-50 NN denotes macrophages
T7925 30-38 JJ denotes alveolar
T7924 28-29 -COMMA- denotes ,
T7923 25-28 NN denotes IAV
T7922 20-24 IN denotes with
T7921 10-19 NN denotes infection
T7920 5-9 NN denotes host
T7919 0-4 IN denotes Upon
T8025 637-638 -LRB- denotes (
T8024 631-636 NN denotes cells
T8023 626-630 NN denotes type
T8022 621-625 JJ denotes wild
T8021 612-620 JJ denotes infected
T8020 609-611 TO denotes to
T8019 600-608 VB denotes compared
T8018 596-599 NN denotes A20
T8017 588-595 VB denotes lacking
T8016 582-587 NN denotes cells
T8015 573-581 JJ denotes infected
T8014 569-572 NN denotes IAV
T8013 566-568 IN denotes in
T8012 559-565 JJ denotes higher
T8011 545-558 RB denotes significantly
R5558 T7921 T7919 arg2Of infection,Upon
R5559 T7921 T7920 arg1Of infection,host
R5560 T7921 T7922 arg1Of infection,with
R5561 T7923 T7922 arg2Of IAV,with
R5562 T7926 T7925 arg1Of macrophages,alveolar
R5563 T7926 T7927 arg1Of macrophages,are
R5564 T7926 T7936 arg1Of macrophages,attracting
R5565 T7927 T7919 arg1Of are,Upon
R5566 T7927 T7924 arg1Of are,","
R5567 T7927 T7935 arg1Of are,","
R5568 T7927 T7936 modOf are,attracting
R5569 T7930 T7927 arg2Of source,are
R5570 T7930 T7928 arg1Of source,an
R5571 T7930 T7929 arg1Of source,important
R5572 T7930 T7931 arg1Of source,of
R5573 T7932 T7933 arg1Of cytokines,and
R5574 T7933 T7931 arg2Of and,of
R5575 T7934 T7933 arg2Of chemokines,and
R5576 T7936 T7940 arg1Of attracting,to
R5577 T7936 T7943 arg1Of attracting,during
R5578 T7939 T7936 arg2Of cells,attracting
R5579 T7939 T7937 arg1Of cells,innate
R5580 T7939 T7938 arg1Of cells,immune
R5581 T7942 T7940 arg2Of lung,to
R5582 T7942 T7941 arg1Of lung,the
R5583 T7946 T7943 arg2Of phase,during
R5584 T7946 T7944 arg1Of phase,the
R5585 T7946 T7945 arg1Of phase,primary
R5586 T7946 T7947 arg1Of phase,of
R5587 T7948 T7947 arg2Of infection,of
R5588 T7950 T7949 arg1Of test,To
R5589 T7952 T7954 arg1Of A20,controls
R5590 T7954 T7950 arg2Of controls,test
R5591 T7954 T7951 arg1Of controls,whether
R5592 T7954 T7953 arg1Of controls,directly
R5593 T7957 T7954 arg2Of expression,controls
R5594 T7957 T7955 arg1Of expression,IAV-induced
R5595 T7957 T7956 arg1Of expression,gene
R5596 T7957 T7958 arg1Of expression,in
R5597 T7960 T7958 arg2Of macrophages,in
R5598 T7960 T7959 arg1Of macrophages,alveolar
R5599 T7962 T7950 arg1Of we,test
R5600 T7962 T7963 arg1Of we,isolated
R5601 T7962 T7974 arg1Of we,infected
R5602 T7963 T7973 arg1Of isolated,and
R5603 T7965 T7963 arg2Of cells,isolated
R5604 T7965 T7964 arg1Of cells,these
R5605 T7965 T7966 arg1Of cells,from
R5606 T7967 T7966 arg2Of lungs,from
R5607 T7967 T7968 arg1Of lungs,of
R5608 T7969 T7970 arg1Of A20myel-KO,and
R5609 T7971 T7970 arg2Of control,and
R5610 T7972 T7968 arg2Of littermates,of
R5611 T7972 T7969 arg1Of littermates,A20myel-KO
R5612 T7972 T7971 arg1Of littermates,control
R5613 T7973 T7949 modOf and,To
R5614 T7973 T7961 arg1Of and,","
R5615 T7974 T7973 arg2Of infected,and
R5616 T7974 T7977 arg1Of infected,vitro
R5617 T7974 T7978 arg1Of infected,with
R5618 T7975 T7974 arg2Of them,infected
R5619 T7977 T7976 arg1Of vitro,in
R5620 T7980 T7978 arg2Of X-47,with
R5621 T7980 T7979 arg1Of X-47,IAV
R5622 T7981 T7982 arg1Of Expression,and
R5623 T7982 T7984 arg1Of and,of
R5624 T7982 T8005 arg1Of and,and
R5625 T7983 T7982 arg2Of secretion,and
R5626 T7987 T7985 arg1Of cytokines,the
R5627 T7987 T7986 arg1Of cytokines,proinflammatory
R5628 T7988 T7989 arg1Of IL-6,and
R5629 T7989 T7984 arg2Of and,of
R5630 T7989 T7987 arg1Of and,cytokines
R5631 T7989 T7991 arg1Of and,","
R5632 T7990 T7989 arg2Of TNF,and
R5633 T7995 T7996 arg1Of IFNβ,and
R5634 T7996 T7992 arg1Of and,the
R5635 T7996 T7993 arg1Of and,type-I
R5636 T7996 T7994 arg1Of and,IFN
R5637 T7996 T7998 arg1Of and,and
R5638 T7997 T7996 arg2Of IFNα4,and
R5639 T7998 T7991 arg2Of and,","
R5640 T8001 T7998 arg2Of MCP-1,and
R5641 T8001 T7999 arg1Of MCP-1,the
R5642 T8001 T8000 arg1Of MCP-1,chemokines
R5643 T8001 T8002 arg1Of MCP-1,(
R5644 T8003 T8002 arg2Of ccl2,(
R5645 T8004 T8002 arg3Of ),(
R5646 T8005 T8010 arg1Of and,was
R5647 T8005 T8012 arg1Of and,higher
R5648 T8006 T8005 arg2Of KC,and
R5649 T8006 T8007 arg1Of KC,(
R5650 T8008 T8007 arg2Of cxcl1,(
R5651 T8009 T8007 arg3Of ),(
R5652 T8012 T8010 arg2Of higher,was
R5653 T8012 T8011 arg1Of higher,significantly
R5654 T8012 T8013 arg1Of higher,in
R5655 T8016 T8013 arg2Of cells,in
R5656 T8016 T8014 arg1Of cells,IAV
R5657 T8016 T8015 arg1Of cells,infected
R5658 T8016 T8017 arg1Of cells,lacking
R5659 T8017 T8019 arg1Of lacking,compared
R5660 T8018 T8017 arg2Of A20,lacking
R5661 T8020 T8019 arg2Of to,compared
R5662 T8024 T8020 arg2Of cells,to
R5663 T8024 T8021 arg1Of cells,infected
R5664 T8024 T8022 arg1Of cells,wild
R5665 T8024 T8023 arg1Of cells,type
R5666 T8024 T8025 arg1Of cells,(
R5667 T8027 T8026 arg1Of 2C,figure
R5668 T8027 T8028 arg1Of 2C,and
R5669 T8028 T8025 arg2Of and,(
R5670 T8030 T8028 arg2Of S1,and
R5671 T8030 T8029 arg1Of S1,figure
R5672 T8031 T8025 arg3Of ),(
R5673 T8032 T8033 arg1Of Taken,together
R5674 T8035 T8034 arg1Of results,these
R5675 T8035 T8036 arg1Of results,demonstrate
R5676 T8036 T8032 modOf demonstrate,Taken
R5677 T8038 T8040 arg1Of A20,regulates
R5678 T8040 T8036 arg2Of regulates,demonstrate
R5679 T8040 T8037 arg1Of regulates,that
R5680 T8040 T8039 arg1Of regulates,negatively
R5681 T8040 T8050 arg1Of regulates,","
R5682 T8040 T8051 arg1Of regulates,consistent
R5683 T8042 T8043 arg1Of proinflammatory,and
R5684 T8044 T8043 arg2Of antiviral,and
R5685 T8046 T8040 arg2Of expression,regulates
R5686 T8046 T8041 arg1Of expression,IAV-induced
R5687 T8046 T8042 arg1Of expression,proinflammatory
R5688 T8046 T8044 arg1Of expression,antiviral
R5689 T8046 T8045 arg1Of expression,gene
R5690 T8046 T8047 arg1Of expression,in
R5691 T8049 T8047 arg2Of macrophages,in
R5692 T8049 T8048 arg1Of macrophages,alveolar
R5693 T8051 T8052 arg1Of consistent,with
R5694 T8055 T8052 arg2Of effect,with
R5695 T8055 T8053 arg1Of effect,the
R5696 T8055 T8054 arg1Of effect,inhibitory
R5697 T8055 T8056 arg1Of effect,of
R5698 T8057 T8056 arg2Of A20,of
R5699 T8057 T8058 arg2Of A20,seen
R5700 T8058 T8059 arg1Of seen,on
R5701 T8061 T8060 arg1Of NF-κB,RIG-I-induced
R5702 T8061 T8062 arg1Of NF-κB,and
R5703 T8062 T8059 arg2Of and,on
R5704 T8064 T8062 arg2Of activation,and
R5705 T8064 T8063 arg1Of activation,IRF3

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7760 479-483 Protein denotes IFNβ
T7759 459-462 Protein denotes TNF
T7758 450-454 Protein denotes IL-6
T7767 895-899 Protein denotes IRF3
T7766 871-876 Protein denotes RIG-I
T7765 534-539 Protein denotes cxcl1
T7764 530-532 Protein denotes KC
T7763 520-524 Protein denotes ccl2
T7762 513-518 Protein denotes MCP-1
T7761 488-493 Protein denotes IFNα4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8355 895-899 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T8354 459-462 http://www.uniprot.org/uniprot/P01375 denotes TNF
T8352 450-454 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T8350 859-862 http://www.uniprot.org/uniprot/P21580 denotes A20
T8349 710-713 http://www.uniprot.org/uniprot/P21580 denotes A20
T8348 596-599 http://www.uniprot.org/uniprot/P21580 denotes A20
T8347 202-205 http://www.uniprot.org/uniprot/P21580 denotes A20

UBERON-AE

Id Subject Object Predicate Lexical cue
T7697 306-311 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lungs
T7696 142-146 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T7784 513-516 http://purl.obolibrary.org/obo/GO_0004298 denotes MCP
T7783 407-416 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T7782 796-804 http://purl.obolibrary.org/obo/GO_0048286 denotes alveolar
T7781 255-263 http://purl.obolibrary.org/obo/GO_0048286 denotes alveolar
T7780 30-38 http://purl.obolibrary.org/obo/GO_0048286 denotes alveolar
T7770 777-792 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T7769 236-251 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

GO-MF

Id Subject Object Predicate Lexical cue
T7788 513-516 http://purl.obolibrary.org/obo/GO_0004298 denotes MCP
T7787 450-454 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

GO-CC

Id Subject Object Predicate Lexical cue
T7795 5-9 http://purl.obolibrary.org/obo/GO_0018995 denotes host
T7794 631-636 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7793 582-587 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7792 295-300 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7791 129-134 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7706 664-911 Sentence denotes Taken together these results demonstrate that A20 negatively regulates IAV-induced proinflammatory and antiviral gene expression in alveolar macrophages, consistent with the inhibitory effect of A20 seen on RIG-I-induced NF-κB and IRF3 activation.
T7705 392-663 Sentence denotes Expression and secretion of the proinflammatory cytokines IL-6 and TNF, the type-I IFN IFNβ and IFNα4 and the chemokines MCP-1 (ccl2) and KC (cxcl1) was significantly higher in IAV infected cells lacking A20 compared to infected wild type cells (figure 2C and figure S1).
T7704 186-391 Sentence denotes To test whether A20 directly controls IAV-induced gene expression in alveolar macrophages, we isolated these cells from lungs of A20myel-KO and control littermates and infected them in vitro with IAV X-47.
T7703 0-185 Sentence denotes Upon host infection with IAV, alveolar macrophages are an important source of cytokines and chemokines, attracting innate immune cells to the lung during the primary phase of infection.
T106 0-185 Sentence denotes Upon host infection with IAV, alveolar macrophages are an important source of cytokines and chemokines, attracting innate immune cells to the lung during the primary phase of infection.
T107 186-391 Sentence denotes To test whether A20 directly controls IAV-induced gene expression in alveolar macrophages, we isolated these cells from lungs of A20myel-KO and control littermates and infected them in vitro with IAV X-47.
T108 392-663 Sentence denotes Expression and secretion of the proinflammatory cytokines IL-6 and TNF, the type-I IFN IFNβ and IFNα4 and the chemokines MCP-1 (ccl2) and KC (cxcl1) was significantly higher in IAV infected cells lacking A20 compared to infected wild type cells (figure 2C and figure S1).
T109 664-911 Sentence denotes Taken together these results demonstrate that A20 negatively regulates IAV-induced proinflammatory and antiviral gene expression in alveolar macrophages, consistent with the inhibitory effect of A20 seen on RIG-I-induced NF-κB and IRF3 activation.

simple1

Id Subject Object Predicate Lexical cue
T7809 895-899 Protein denotes IRF3
T7808 871-876 Protein denotes RIG-I
T7807 534-539 Protein denotes cxcl1
T7806 530-532 Protein denotes KC
T7805 520-524 Protein denotes ccl2
T7804 513-518 Protein denotes MCP-1
T7803 488-493 Protein denotes IFNα4
T7802 479-483 Protein denotes IFNβ
T7801 459-462 Protein denotes TNF
T7800 450-454 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8509 877-884 Positive_regulation denotes induced
T8508 900-910 Positive_regulation denotes activation
T8507 392-402 Gene_expression denotes Expression
T8506 407-416 Localization denotes secretion
T8502 895-899 Protein denotes IRF3
T8501 871-876 Protein denotes RIG-I
T8500 513-518 Protein denotes MCP-1
T8499 488-493 Protein denotes IFNα4
T8498 479-483 Protein denotes IFNβ
T8497 459-462 Protein denotes TNF
T8496 450-454 Protein denotes IL-6
T8495 534-539 Protein denotes cxcl1
T8494 530-532 Protein denotes KC
T8493 520-524 Protein denotes ccl2
R6057 T8494 T8506 themeOf KC,secretion
R6059 T8495 T8506 themeOf cxcl1,secretion
R6061 T8496 T8506 themeOf IL-6,secretion
R6063 T8497 T8506 themeOf TNF,secretion
R6069 T8500 T8506 themeOf MCP-1,secretion
R6055 T8493 T8506 themeOf ccl2,secretion
R6056 T8493 T8507 themeOf ccl2,Expression
R6058 T8494 T8507 themeOf KC,Expression
R6060 T8495 T8507 themeOf cxcl1,Expression
R6062 T8496 T8507 themeOf IL-6,Expression
R6064 T8497 T8507 themeOf TNF,Expression
R6065 T8498 T8506 themeOf IFNβ,secretion
R6066 T8498 T8507 themeOf IFNβ,Expression
R6067 T8499 T8506 themeOf IFNα4,secretion
R6068 T8499 T8507 themeOf IFNα4,Expression
R6070 T8500 T8507 themeOf MCP-1,Expression
R6071 T8501 T8509 themeOf RIG-I,induced
R6072 T8502 T8508 themeOf IRF3,activation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8374 900-910 Positive_regulation denotes activation
T8373 392-402 Gene_expression denotes Expression
T8372 407-416 Gene_expression denotes secretion
T8369 895-899 Protein denotes IRF3
T8368 871-876 Protein denotes RIG-I
T8367 513-518 Protein denotes MCP-1
T8366 488-493 Protein denotes IFNα4
T8365 479-483 Protein denotes IFNβ
T8364 459-462 Protein denotes TNF
T8363 450-454 Protein denotes IL-6
T8362 534-539 Protein denotes cxcl1
T8361 530-532 Protein denotes KC
T8360 520-524 Protein denotes ccl2
R5971 T8360 T8372 themeOf ccl2,secretion
R5972 T8360 T8373 themeOf ccl2,Expression
R5973 T8361 T8372 themeOf KC,secretion
R5974 T8361 T8373 themeOf KC,Expression
R5975 T8362 T8372 themeOf cxcl1,secretion
R5976 T8362 T8373 themeOf cxcl1,Expression
R5977 T8363 T8372 themeOf IL-6,secretion
R5978 T8363 T8373 themeOf IL-6,Expression
R5979 T8364 T8373 themeOf TNF,Expression
R5980 T8366 T8372 themeOf IFNα4,secretion
R5981 T8367 T8372 themeOf MCP-1,secretion
R5982 T8367 T8373 themeOf MCP-1,Expression
R5983 T8369 T8374 themeOf IRF3,activation

DLUT931

Id Subject Object Predicate Lexical cue
T8394 900-910 Positive_regulation denotes activation
T8393 407-416 Localization denotes secretion
T8392 392-402 Gene_expression denotes Expression
T8388 895-899 Protein denotes IRF3
T8387 871-876 Protein denotes RIG-I
T8386 513-518 Protein denotes MCP-1
T8385 488-493 Protein denotes IFNα4
T8384 479-483 Protein denotes IFNβ
T8383 459-462 Protein denotes TNF
T8382 450-454 Protein denotes IL-6
T8381 534-539 Protein denotes cxcl1
T8380 530-532 Protein denotes KC
T8379 520-524 Protein denotes ccl2
R5990 T8379 T8392 themeOf ccl2,Expression
R5991 T8379 T8393 themeOf ccl2,secretion
R5992 T8380 T8392 themeOf KC,Expression
R5993 T8380 T8393 themeOf KC,secretion
R5994 T8381 T8392 themeOf cxcl1,Expression
R5995 T8381 T8393 themeOf cxcl1,secretion
R5996 T8382 T8392 themeOf IL-6,Expression
R5997 T8382 T8393 themeOf IL-6,secretion
R5998 T8383 T8392 themeOf TNF,Expression
R5999 T8383 T8393 themeOf TNF,secretion
R6000 T8384 T8392 themeOf IFNβ,Expression
R6001 T8385 T8392 themeOf IFNα4,Expression
R6002 T8386 T8392 themeOf MCP-1,Expression
R6003 T8386 T8393 themeOf MCP-1,secretion
R6004 T8388 T8394 themeOf IRF3,activation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8528 475-483 Protein denotes IFN IFNβ
T8526 856-862 Protein denotes of A20
T8525 652-661 Entity denotes figure S1
T8524 289-300 Entity denotes these cells
T8523 30-50 Entity denotes alveolar macrophages
T8522 459-463 Protein denotes TNF,
T8518 475-478 Protein denotes IFN
T8517 596-599 Protein denotes A20
T8515 440-449 Protein denotes cytokines
T8514 868-890 Protein denotes on RIG-I-induced NF-κB
T8513 92-102 Protein denotes chemokines
T8512 498-518 Protein denotes the chemokines MCP-1
T8558 895-910 Positive_regulation denotes IRF3 activation
T8555 868-890 Gene_expression denotes on RIG-I-induced NF-κB
T8554 868-890 Positive_regulation denotes on RIG-I-induced NF-κB
T8553 829-890 Regulation denotes with the inhibitory effect of A20 seen on RIG-I-induced NF-κB
T8552 202-275 Regulation denotes A20 directly controls IAV-induced gene expression in alveolar macrophages
T8551 895-899 Protein denotes IRF3
T8549 520-524 Protein denotes ccl2
T8548 710-713 Protein denotes A20
T8547 534-539 Protein denotes cxcl1
T8546 767-776 Entity denotes antiviral
T8544 255-275 Entity denotes alveolar macrophages
T8542 498-518 Protein denotes the chemokines MCP-1
T8541 796-816 Entity denotes alveolar macrophages
T8540 488-493 Protein denotes IFNα4
T8537 450-454 Protein denotes IL-6
T8535 530-540 Protein denotes KC (cxcl1)
T8534 609-662 Entity denotes to infected wild type cells (figure 2C and figure S1)
T8533 871-884 Protein denotes RIG-I-induced
T8531 202-205 Protein denotes A20
T8529 78-87 Protein denotes cytokines
R6075 T8514 T8553 themeOf on RIG-I-induced NF-κB,with the inhibitory effect of A20 seen on RIG-I-induced NF-κB
R6076 T8514 T8554 themeOf on RIG-I-induced NF-κB,on RIG-I-induced NF-κB
R6077 T8514 T8555 themeOf on RIG-I-induced NF-κB,on RIG-I-induced NF-κB
R6078 T8526 T8553 causeOf of A20,with the inhibitory effect of A20 seen on RIG-I-induced NF-κB
R6079 T8531 T8552 causeOf A20,A20 directly controls IAV-induced gene expression in alveolar macrophages
R6081 T8533 T8554 causeOf RIG-I-induced,on RIG-I-induced NF-κB
R6083 T8551 T8558 themeOf IRF3,IRF3 activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8341 910-911 . denotes .
T8340 900-910 NN denotes activation
T8339 895-899 JJ denotes IRF3
T8338 891-894 CC denotes and
T8337 885-890 NN denotes NF-κB
T8336 871-884 JJ denotes RIG-I-induced
T8335 868-870 IN denotes on
T8334 863-867 VBN denotes seen
T8333 859-862 NNP denotes A20
T8332 856-858 IN denotes of
T8331 849-855 NN denotes effect
T8330 838-848 JJ denotes inhibitory
T8329 834-837 DT denotes the
T8328 829-833 IN denotes with
T8327 818-828 JJ denotes consistent
T8326 816-817 , denotes ,
T8325 805-816 NNS denotes macrophages
T8324 796-804 JJ denotes alveolar
T8323 793-795 IN denotes in
T8322 782-792 NN denotes expression
T8321 777-781 NN denotes gene
T8320 767-776 JJ denotes antiviral
T8319 763-766 CC denotes and
T8318 747-762 JJ denotes proinflammatory
T8317 735-746 JJ denotes IAV-induced
T8316 725-734 VBZ denotes regulates
T8315 714-724 RB denotes negatively
T8314 710-713 CD denotes A20
T8313 705-709 IN denotes that
T8241 306-311 NNS denotes lungs
T8240 301-305 IN denotes from
T8239 295-300 NNS denotes cells
T8238 289-294 DT denotes these
T8237 280-288 VBD denotes isolated
T8236 277-279 PRP denotes we
T8235 275-276 , denotes ,
T8234 264-275 NNS denotes macrophages
T8233 255-263 JJ denotes alveolar
T8232 252-254 IN denotes in
T8231 241-251 NN denotes expression
T8230 236-240 NN denotes gene
T8229 224-235 JJ denotes IAV-induced
T8228 215-223 VBZ denotes controls
T8227 206-214 RB denotes directly
T8226 202-205 NNP denotes A20
T8225 194-201 IN denotes whether
T8224 189-193 VB denotes test
T8223 186-188 TO denotes To
T8222 184-185 . denotes .
T8221 175-184 NN denotes infection
T8220 172-174 IN denotes of
T8219 166-171 NN denotes phase
T8218 158-165 JJ denotes primary
T8217 154-157 DT denotes the
T8216 147-153 IN denotes during
T8215 142-146 NN denotes lung
T8214 138-141 DT denotes the
T8213 135-137 TO denotes to
T8212 129-134 NNS denotes cells
T8211 122-128 JJ denotes immune
T8210 115-121 JJ denotes innate
T8209 104-114 VBG denotes attracting
T8208 102-103 , denotes ,
T8207 92-102 NNS denotes chemokines
T8206 88-91 CC denotes and
T8205 78-87 NNS denotes cytokines
T8204 75-77 IN denotes of
T8203 68-74 NN denotes source
T8202 58-67 JJ denotes important
T8201 55-57 DT denotes an
T8200 51-54 VBP denotes are
T8199 39-50 NNS denotes macrophages
T8198 30-38 JJ denotes alveolar
T8197 28-29 , denotes ,
T8196 25-28 NNP denotes IAV
T8195 20-24 IN denotes with
T8194 10-19 NN denotes infection
T8193 5-9 NN denotes host
T8192 0-4 IN denotes Upon
T8312 693-704 VBP denotes demonstrate
T8311 685-692 NNS denotes results
T8310 679-684 DT denotes these
T8309 670-678 RB denotes together
T8308 664-669 VBN denotes Taken
T8307 662-663 . denotes .
T8306 661-662 -RRB- denotes )
T8305 659-661 CD denotes S1
T8304 652-658 NN denotes figure
T8303 648-651 CC denotes and
T8302 645-647 NN denotes 2C
T8301 638-644 NN denotes figure
T8300 637-638 -LRB- denotes (
T8299 631-636 NNS denotes cells
T8298 626-630 NN denotes type
T8297 621-625 JJ denotes wild
T8296 612-620 JJ denotes infected
T8295 609-611 TO denotes to
T8294 600-608 VBN denotes compared
T8293 596-599 NNP denotes A20
T8292 588-595 VBG denotes lacking
T8291 582-587 NNS denotes cells
T8290 573-581 JJ denotes infected
T8289 569-572 NNP denotes IAV
T8288 566-568 IN denotes in
T8287 559-565 JJR denotes higher
T8286 545-558 RB denotes significantly
T8285 541-544 VBD denotes was
T8284 539-540 -RRB- denotes )
T8283 534-539 CD denotes cxcl1
T8282 533-534 -LRB- denotes (
T8281 530-532 NNP denotes KC
T8280 526-529 CC denotes and
T8279 524-525 -RRB- denotes )
T8278 520-524 CD denotes ccl2
T8277 519-520 -LRB- denotes (
T8276 513-518 NNP denotes MCP-1
T8275 502-512 NNS denotes chemokines
T8274 498-501 DT denotes the
T8273 494-497 CC denotes and
T8272 488-493 NNP denotes IFNα4
T8271 484-487 CC denotes and
T8270 479-483 NNP denotes IFNβ
T8269 475-478 NNP denotes IFN
T8268 468-474 NNP denotes type-I
T8267 464-467 DT denotes the
T8266 462-463 , denotes ,
T8265 459-462 NNP denotes TNF
T8264 455-458 CC denotes and
T8263 450-454 NNP denotes IL-6
T8262 440-449 NNS denotes cytokines
T8261 424-439 JJ denotes proinflammatory
T8260 420-423 DT denotes the
T8259 417-419 IN denotes of
T8258 407-416 NN denotes secretion
T8257 403-406 CC denotes and
T8256 392-402 NN denotes Expression
T8255 390-391 . denotes .
T8254 386-390 NNP denotes X-47
T8253 382-385 NNP denotes IAV
T8252 377-381 IN denotes with
T8251 371-376 NN denotes vitro
T8250 368-370 IN denotes in
T8249 363-367 PRP denotes them
T8248 354-362 VBD denotes infected
T8247 350-353 CC denotes and
T8246 338-349 NNS denotes littermates
T8245 330-337 NN denotes control
T8244 326-329 CC denotes and
T8243 315-325 JJ denotes A20myel-KO
T8242 312-314 IN denotes of
R5827 T8200 T8200 ROOT are,are
R5828 T8201 T8203 det an,source
R5829 T8202 T8203 amod important,source
R5830 T8203 T8200 attr source,are
R5831 T8204 T8203 prep of,source
R5832 T8205 T8204 pobj cytokines,of
R5833 T8206 T8205 cc and,cytokines
R5834 T8207 T8205 conj chemokines,cytokines
R5835 T8208 T8200 punct ",",are
R5836 T8209 T8200 advcl attracting,are
R5837 T8210 T8212 amod innate,cells
R5838 T8211 T8212 amod immune,cells
R5839 T8212 T8209 dobj cells,attracting
R5840 T8213 T8209 prep to,attracting
R5841 T8214 T8215 det the,lung
R5842 T8215 T8213 pobj lung,to
R5843 T8216 T8209 prep during,attracting
R5844 T8217 T8219 det the,phase
R5845 T8218 T8219 amod primary,phase
R5846 T8219 T8216 pobj phase,during
R5847 T8220 T8219 prep of,phase
R5848 T8221 T8220 pobj infection,of
R5849 T8222 T8200 punct .,are
R5850 T8223 T8224 aux To,test
R5851 T8224 T8237 advcl test,isolated
R5852 T8225 T8228 mark whether,controls
R5853 T8226 T8228 nsubj A20,controls
R5854 T8227 T8228 advmod directly,controls
R5855 T8228 T8237 advcl controls,isolated
R5856 T8229 T8231 amod IAV-induced,expression
R5857 T8230 T8231 compound gene,expression
R5858 T8231 T8228 dobj expression,controls
R5859 T8232 T8231 prep in,expression
R5860 T8233 T8234 amod alveolar,macrophages
R5861 T8234 T8232 pobj macrophages,in
R5862 T8235 T8237 punct ",",isolated
R5863 T8236 T8237 nsubj we,isolated
R5864 T8237 T8237 ROOT isolated,isolated
R5865 T8238 T8239 det these,cells
R5866 T8239 T8237 dobj cells,isolated
R5867 T8240 T8237 prep from,isolated
R5868 T8241 T8240 pobj lungs,from
R5869 T8242 T8241 prep of,lungs
R5870 T8243 T8242 pobj A20myel-KO,of
R5871 T8244 T8243 cc and,A20myel-KO
R5872 T8245 T8243 conj control,A20myel-KO
R5873 T8246 T8243 conj littermates,A20myel-KO
R5874 T8247 T8237 cc and,isolated
R5875 T8248 T8237 conj infected,isolated
R5876 T8249 T8248 dobj them,infected
R5877 T8250 T8248 prep in,infected
R5878 T8251 T8250 pobj vitro,in
R5879 T8252 T8248 prep with,infected
R5880 T8253 T8254 compound IAV,X-47
R5881 T8254 T8252 pobj X-47,with
R5882 T8255 T8237 punct .,isolated
R5883 T8256 T8285 nsubj Expression,was
R5884 T8257 T8256 cc and,Expression
R5885 T8258 T8256 conj secretion,Expression
R5886 T8259 T8258 prep of,secretion
R5887 T8260 T8262 det the,cytokines
R5888 T8261 T8262 amod proinflammatory,cytokines
R5889 T8262 T8263 compound cytokines,IL-6
R5890 T8263 T8259 pobj IL-6,of
R5891 T8264 T8263 cc and,IL-6
R5892 T8265 T8263 conj TNF,IL-6
R5893 T8266 T8265 punct ",",TNF
R5894 T8267 T8270 det the,IFNβ
R5895 T8268 T8270 compound type-I,IFNβ
R5896 T8269 T8270 compound IFN,IFNβ
R5897 T8270 T8265 conj IFNβ,TNF
R5898 T8271 T8270 cc and,IFNβ
R5899 T8272 T8270 conj IFNα4,IFNβ
R5900 T8273 T8272 cc and,IFNα4
R5901 T8274 T8275 det the,chemokines
R5902 T8275 T8272 conj chemokines,IFNα4
R5903 T8276 T8285 nsubj MCP-1,was
R5904 T8277 T8278 punct (,ccl2
R5905 T8278 T8276 parataxis ccl2,MCP-1
R5906 T8279 T8278 punct ),ccl2
R5907 T8280 T8276 cc and,MCP-1
R5908 T8281 T8276 conj KC,MCP-1
R5909 T8282 T8283 punct (,cxcl1
R5910 T8283 T8276 appos cxcl1,MCP-1
R5911 T8284 T8276 punct ),MCP-1
R5912 T8285 T8285 ROOT was,was
R5913 T8286 T8287 advmod significantly,higher
R5914 T8287 T8285 acomp higher,was
R5915 T8288 T8285 prep in,was
R5916 T8289 T8291 nmod IAV,cells
R5917 T8290 T8291 amod infected,cells
R5918 T8291 T8288 pobj cells,in
R5919 T8292 T8291 acl lacking,cells
R5920 T8293 T8292 dobj A20,lacking
R5921 T8294 T8285 prep compared,was
R5922 T8295 T8294 prep to,compared
R5923 T8296 T8299 amod infected,cells
R5924 T8297 T8299 amod wild,cells
R5925 T8298 T8299 compound type,cells
R5926 T8299 T8295 pobj cells,to
R5927 T8300 T8301 punct (,figure
R5928 T8301 T8299 parataxis figure,cells
R5929 T8302 T8301 npadvmod 2C,figure
R5930 T8303 T8302 cc and,2C
R5931 T8304 T8302 conj figure,2C
R5932 T8305 T8304 nummod S1,figure
R5933 T8306 T8301 punct ),figure
R5934 T8307 T8285 punct .,was
R5935 T8308 T8312 prep Taken,demonstrate
R5936 T8309 T8308 advmod together,Taken
R5937 T8310 T8311 det these,results
R5938 T8311 T8312 nsubj results,demonstrate
R5939 T8312 T8312 ROOT demonstrate,demonstrate
R5940 T8313 T8316 mark that,regulates
R5941 T8314 T8316 nsubj A20,regulates
R5942 T8315 T8316 advmod negatively,regulates
R5943 T8316 T8312 ccomp regulates,demonstrate
R5944 T8317 T8322 amod IAV-induced,expression
R5945 T8318 T8322 amod proinflammatory,expression
R5946 T8319 T8318 cc and,proinflammatory
R5947 T8320 T8318 conj antiviral,proinflammatory
R5948 T8321 T8322 compound gene,expression
R5949 T8322 T8316 dobj expression,regulates
R5950 T8323 T8322 prep in,expression
R5951 T8324 T8325 amod alveolar,macrophages
R5952 T8325 T8323 pobj macrophages,in
R5953 T8326 T8322 punct ",",expression
R5954 T8327 T8322 amod consistent,expression
R5955 T8328 T8327 prep with,consistent
R5956 T8329 T8331 det the,effect
R5957 T8330 T8331 amod inhibitory,effect
R5958 T8331 T8328 pobj effect,with
R5959 T8332 T8331 prep of,effect
R5960 T8333 T8332 pobj A20,of
R5961 T8334 T8331 acl seen,effect
R5962 T8335 T8334 prep on,seen
R5963 T8336 T8337 amod RIG-I-induced,NF-κB
R5964 T8337 T8335 pobj NF-κB,on
R5965 T8338 T8337 cc and,NF-κB
R5966 T8339 T8340 amod IRF3,activation
R5967 T8340 T8337 conj activation,NF-κB
R5968 T8341 T8312 punct .,demonstrate
R5819 T8192 T8200 prep Upon,are
R5820 T8193 T8194 compound host,infection
R5821 T8194 T8192 pobj infection,Upon
R5822 T8195 T8194 prep with,infection
R5823 T8196 T8195 pobj IAV,with
R5824 T8197 T8200 punct ",",are
R5825 T8198 T8199 amod alveolar,macrophages
R5826 T8199 T8200 nsubj macrophages,are

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8451 900-910 Positive_regulation denotes activation
T8450 900-910 Positive_regulation denotes activation
T8449 895-899 Protein denotes IRF3
T8448 885-890 Protein denotes NF-κB
T8447 710-713 Protein denotes A20
T8446 407-416 Localization denotes secretion
T8445 407-416 Localization denotes secretion
T8444 407-416 Localization denotes secretion
T8443 392-402 Gene_expression denotes Expression
T8442 392-402 Gene_expression denotes Expression
T8441 392-402 Gene_expression denotes Expression
T8440 392-402 Gene_expression denotes Expression
T8439 392-402 Gene_expression denotes Expression
T8438 392-402 Gene_expression denotes Expression
T8437 392-402 Gene_expression denotes Expression
T8436 392-402 Gene_expression denotes Expression
T8435 534-539 Protein denotes cxcl1
T8434 530-532 Protein denotes KC
T8433 520-524 Protein denotes ccl2
T8432 502-518 Protein denotes chemokines MCP-1
T8431 488-493 Protein denotes IFNα4
T8430 468-483 Protein denotes type-I IFN IFNβ
T8429 459-462 Protein denotes TNF
T8428 440-454 Protein denotes cytokines IL-6
R6020 T8428 T8436 themeOf cytokines IL-6,Expression
R6021 T8429 T8437 themeOf TNF,Expression
R6022 T8429 T8444 themeOf TNF,secretion
R6023 T8430 T8438 themeOf type-I IFN IFNβ,Expression
R6024 T8431 T8439 themeOf IFNα4,Expression
R6025 T8432 T8440 themeOf chemokines MCP-1,Expression
R6026 T8432 T8445 themeOf chemokines MCP-1,secretion
R6027 T8433 T8441 themeOf ccl2,Expression
R6028 T8434 T8442 themeOf KC,Expression
R6029 T8434 T8446 themeOf KC,secretion
R6030 T8435 T8443 themeOf cxcl1,Expression
R6031 T8448 T8450 themeOf NF-κB,activation
R6032 T8449 T8451 themeOf IRF3,activation

testone

Id Subject Object Predicate Lexical cue
T7659 588-595 Negative_regulation denotes lacking
T7658 407-416 Localization denotes secretion
T7657 392-402 Gene_expression denotes Expression
T7651 895-899 Protein denotes IRF3
T7650 871-876 Protein denotes RIG-I
T7649 534-539 Protein denotes cxcl1
T7648 530-532 Protein denotes KC
T7647 520-524 Protein denotes ccl2
T7646 513-518 Protein denotes MCP-1
T7645 488-493 Protein denotes IFNα4
T7644 479-483 Protein denotes IFNβ
T7643 459-462 Protein denotes TNF
T7642 450-454 Protein denotes IL-6
R5383 T7642 T7658 themeOf IL-6,secretion
R5384 T7642 T7657 themeOf IL-6,Expression
R5385 T7643 T7658 themeOf TNF,secretion
R5386 T7644 T7658 themeOf IFNβ,secretion
R5387 T7645 T7658 themeOf IFNα4,secretion
R5388 T7646 T7658 themeOf MCP-1,secretion
R5389 T7647 T7646 equivalentTo ccl2,MCP-1
R5390 T7648 T7658 themeOf KC,secretion
R5391 T7649 T7646 equivalentTo cxcl1,MCP-1
R5392 T7649 T7648 equivalentTo cxcl1,KC