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PMC:3291650 / 16054-16182 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T20271 87-102 Transcription denotes mRNA expression
T20270 74-78 Protein denotes IFNβ
T20269 68-72 Protein denotes IL-6
T20262 74-78 Protein denotes IFNβ
T20261 68-72 Protein denotes IL-6
R15139 T20269 T20271 themeOf IL-6,mRNA expression
R15140 T20270 T20271 themeOf IFNβ,mRNA expression

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20379 126-127 -RRB- denotes )
T20378 125-126 NN denotes A
T20377 124-125 -LRB- denotes (
T20376 119-123 NN denotes qPCR
T20375 116-118 IN denotes by
T20374 107-115 VB denotes analyzed
T20373 103-106 VB denotes was
T20372 92-102 NN denotes expression
T20371 87-91 NN denotes mRNA
T20370 83-86 NN denotes A20
T20369 79-82 CC denotes and
T20368 74-78 NN denotes IFNβ
T20367 72-73 -COMMA- denotes ,
T20366 68-72 NN denotes IL-6
T20365 64-67 CC denotes and
T20364 58-63 VB denotes lysed
T20363 53-57 VB denotes were
T20362 47-52 NN denotes cells
T20361 45-46 -RRB- denotes )
T20360 41-45 NN denotes p.i.
T20359 35-40 NN denotes hours
T20358 34-35 -LRB- denotes (
T20357 24-33 NN denotes infection
T20356 19-23 NN denotes post
T20355 13-18 NN denotes hours
T20354 3-12 JJ denotes different
T20353 0-2 IN denotes At
R15176 T20357 T20353 arg2Of infection,At
R15177 T20357 T20354 arg1Of infection,different
R15178 T20357 T20355 arg1Of infection,hours
R15179 T20357 T20356 arg1Of infection,post
R15180 T20360 T20358 arg2Of p.i.,(
R15181 T20360 T20359 arg1Of p.i.,hours
R15182 T20361 T20358 arg3Of ),(
R15183 T20362 T20358 arg1Of cells,(
R15184 T20362 T20363 arg1Of cells,were
R15185 T20362 T20364 arg2Of cells,lysed
R15186 T20364 T20363 arg2Of lysed,were
R15187 T20364 T20365 arg1Of lysed,and
R15188 T20365 T20353 arg1Of and,At
R15189 T20366 T20367 arg1Of IL-6,","
R15190 T20367 T20369 arg1Of ",",and
R15191 T20368 T20367 arg2Of IFNβ,","
R15192 T20370 T20369 arg2Of A20,and
R15193 T20372 T20366 arg1Of expression,IL-6
R15194 T20372 T20368 arg1Of expression,IFNβ
R15195 T20372 T20370 arg1Of expression,A20
R15196 T20372 T20371 arg1Of expression,mRNA
R15197 T20372 T20373 arg1Of expression,was
R15198 T20372 T20374 arg2Of expression,analyzed
R15199 T20374 T20365 arg2Of analyzed,and
R15200 T20374 T20373 arg2Of analyzed,was
R15201 T20376 T20374 arg1Of qPCR,analyzed
R15202 T20376 T20375 arg2Of qPCR,by
R15203 T20376 T20377 arg1Of qPCR,(
R15204 T20378 T20377 arg2Of A,(
R15205 T20379 T20377 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T20300 74-78 Protein denotes IFNβ
T20299 68-72 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20644 68-72 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T20643 83-86 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-MF

Id Subject Object Predicate Lexical cue
T20310 68-72 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

GO-CC

Id Subject Object Predicate Lexical cue
T20313 47-52 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T20281 0-128 Sentence denotes At different hours post infection (hours p.i.) cells were lysed and IL-6, IFNβ and A20 mRNA expression was analyzed by qPCR (A).
T100 0-128 Sentence denotes At different hours post infection (hours p.i.) cells were lysed and IL-6, IFNβ and A20 mRNA expression was analyzed by qPCR (A).

simple1

Id Subject Object Predicate Lexical cue
T20317 74-78 Protein denotes IFNβ
T20316 68-72 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20724 92-102 Transcription denotes expression
T20717 74-78 Protein denotes IFNβ
T20716 68-72 Protein denotes IL-6
R15489 T20716 T20724 themeOf IL-6,expression
R15490 T20717 T20724 themeOf IFNβ,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20656 92-102 Transcription denotes expression
T20649 74-78 Protein denotes IFNβ
T20648 68-72 Protein denotes IL-6
R15471 T20648 T20656 themeOf IL-6,expression

DLUT931

Id Subject Object Predicate Lexical cue
T20676 92-102 Transcription denotes expression
T20669 74-78 Protein denotes IFNβ
T20668 68-72 Protein denotes IL-6
R15475 T20668 T20676 themeOf IL-6,expression
R15476 T20669 T20676 themeOf IFNβ,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20749 68-123 Gene_expression denotes IL-6, IFNβ and A20 mRNA expression was analyzed by qPCR
T20748 68-123 Transcription denotes IL-6, IFNβ and A20 mRNA expression was analyzed by qPCR
T20745 83-86 Protein denotes A20
T20744 68-91 Protein denotes IL-6, IFNβ and A20 mRNA
T20740 74-78 Protein denotes IFNβ
T20739 47-52 Entity denotes cells
T20732 68-72 Protein denotes IL-6
T20730 58-63 Protein denotes lysed
R15496 T20744 T20748 themeOf "IL-6, IFNβ and A20 mRNA","IL-6, IFNβ and A20 mRNA expression was analyzed by qPCR"
R15497 T20744 T20749 themeOf "IL-6, IFNβ and A20 mRNA","IL-6, IFNβ and A20 mRNA expression was analyzed by qPCR"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20534 127-128 . denotes .
T20533 126-127 -RRB- denotes )
T20532 125-126 NNP denotes A
T20531 124-125 -LRB- denotes (
T20530 119-123 NNP denotes qPCR
T20529 116-118 IN denotes by
T20528 107-115 VBN denotes analyzed
T20527 103-106 VBD denotes was
T20526 92-102 NN denotes expression
T20525 87-91 NNP denotes mRNA
T20524 83-86 NNP denotes A20
T20523 79-82 CC denotes and
T20522 74-78 NNP denotes IFNβ
T20521 72-73 , denotes ,
T20520 68-72 NNP denotes IL-6
T20519 64-67 CC denotes and
T20518 58-63 VBN denotes lysed
T20517 53-57 VBD denotes were
T20516 47-52 NNS denotes cells
T20515 45-46 -RRB- denotes )
T20514 41-45 VBP denotes p.i.
T20513 35-40 NNS denotes hours
T20512 34-35 -LRB- denotes (
T20511 24-33 NN denotes infection
T20510 19-23 NN denotes post
T20509 13-18 NNS denotes hours
T20508 3-12 JJ denotes different
T20507 0-2 IN denotes At
R15336 T20507 T20518 prep At,lysed
R15337 T20508 T20509 amod different,hours
R15338 T20509 T20510 compound hours,post
R15339 T20510 T20511 compound post,infection
R15340 T20511 T20507 pobj infection,At
R15341 T20512 T20514 punct (,p.i.
R15342 T20513 T20514 compound hours,p.i.
R15343 T20514 T20511 appos p.i.,infection
R15344 T20515 T20514 punct ),p.i.
R15345 T20516 T20518 nsubjpass cells,lysed
R15346 T20517 T20518 auxpass were,lysed
R15347 T20518 T20518 ROOT lysed,lysed
R15348 T20519 T20518 cc and,lysed
R15349 T20520 T20518 conj IL-6,lysed
R15350 T20521 T20520 punct ",",IL-6
R15351 T20522 T20520 conj IFNβ,IL-6
R15352 T20523 T20522 cc and,IFNβ
R15353 T20524 T20525 compound A20,mRNA
R15354 T20525 T20526 compound mRNA,expression
R15355 T20526 T20522 conj expression,IFNβ
R15356 T20527 T20528 auxpass was,analyzed
R15357 T20528 T20518 conj analyzed,lysed
R15358 T20529 T20528 agent by,analyzed
R15359 T20530 T20529 pobj qPCR,by
R15360 T20531 T20532 punct (,A
R15361 T20532 T20530 appos A,qPCR
R15362 T20533 T20530 punct ),qPCR
R15363 T20534 T20518 punct .,lysed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20680 74-78 Protein denotes IFNβ
T20679 68-72 Protein denotes IL-6
T20684 92-102 Gene_expression denotes expression
T20683 92-102 Gene_expression denotes expression
T20682 92-102 Gene_expression denotes expression
T20681 83-91 Protein denotes A20 mRNA
R15479 T20679 T20682 themeOf IL-6,expression
R15480 T20680 T20683 themeOf IFNβ,expression
R15481 T20681 T20684 themeOf A20 mRNA,expression

testone

Id Subject Object Predicate Lexical cue
T20259 87-102 Transcription denotes mRNA expression
T20252 74-78 Protein denotes IFNβ
T20251 68-72 Protein denotes IL-6
R15135 T20251 T20259 themeOf IL-6,mRNA expression
R15136 T20252 T20259 themeOf IFNβ,mRNA expression