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PMC:3291650 / 158-720 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T20 305-310 Protein denotes RIG-I
T19 275-304 Protein denotes pathogen recognition receptor
T15 305-310 Protein denotes RIG-I
T14 275-304 Protein denotes pathogen recognition receptor

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T164 555-559 VB denotes used
T163 552-554 PRP denotes we
T162 547-551 RB denotes Here
T161 535-545 NN denotes strategies
T160 523-534 JJ denotes therapeutic
T159 517-522 JJ denotes novel
T158 509-516 VB denotes develop
T157 506-508 TO denotes to
T156 495-505 NN denotes importance
T155 491-494 JJ denotes key
T154 488-490 IN denotes of
T153 485-487 VB denotes is
T152 477-484 NN denotes viruses
T151 471-476 JJ denotes other
T150 467-470 CC denotes and
T149 463-466 NN denotes IAV
T148 460-462 TO denotes to
T147 450-459 NN denotes responses
T146 443-449 JJ denotes immune
T145 436-442 JJ denotes innate
T144 427-435 VB denotes regulate
T143 422-426 WDT denotes that
T142 411-421 NN denotes mechanisms
T141 407-410 DT denotes the
T140 393-406 VB denotes Understanding
T139 381-391 NN denotes interferon
T138 371-380 JJ denotes antiviral
T137 367-370 CC denotes and
T136 357-366 NN denotes cytokines
T135 341-356 JJ denotes proinflammatory
T134 338-340 IN denotes of
T133 327-337 NN denotes production
T132 323-326 DT denotes the
T131 315-322 VB denotes induces
T130 311-314 CC denotes and
T129 305-310 NN denotes RIG-I
T128 296-304 NN denotes receptor
T127 284-295 NN denotes recognition
T126 275-283 NN denotes pathogen
T125 261-274 JJ denotes intracellular
T124 257-260 DT denotes the
T123 247-256 VB denotes activates
T122 241-246 WDT denotes which
T121 239-240 -COMMA- denotes ,
T120 234-239 NN denotes cycle
T119 229-233 NN denotes life
T118 217-228 NN denotes replication
T117 213-216 DT denotes the
T116 206-212 IN denotes during
T115 193-205 NN denotes intermediate
T114 190-192 DT denotes an
T113 187-189 IN denotes as
T112 183-186 NN denotes RNA
T111 167-182 JJ denotes double-stranded
T110 158-166 VB denotes produces
T109 156-157 -RRB- denotes )
T108 153-156 NN denotes IAV
T107 152-153 -LRB- denotes (
T106 146-151 NN denotes virus
T105 144-145 NN denotes A
T104 134-143 NN denotes Influenza
T103 123-132 NN denotes molecules
T102 113-122 JJ denotes microbial
T101 104-112 JJ denotes specific
T100 101-103 TO denotes to
T99 90-100 VB denotes responding
T98 87-89 IN denotes by
T97 77-86 NN denotes pathogens
T96 71-76 JJ denotes other
T95 67-70 CC denotes and
T94 59-66 NN denotes viruses
T93 51-58 IN denotes against
T92 43-50 NN denotes defense
T91 40-42 IN denotes of
T90 35-39 NN denotes line
T89 29-34 JJ denotes first
T88 25-28 DT denotes the
T87 16-24 VB denotes provides
T86 7-15 NN denotes response
T85 0-6 JJ denotes immune
R16 T86 T85 arg1Of response,immune
R17 T86 T87 arg1Of response,provides
R18 T86 T99 arg1Of response,responding
R19 T87 T98 arg1Of provides,by
R20 T90 T87 arg2Of line,provides
R21 T90 T88 arg1Of line,the
R22 T90 T89 arg1Of line,first
R23 T90 T91 arg1Of line,of
R24 T90 T93 arg1Of line,against
R25 T92 T91 arg2Of defense,of
R26 T94 T95 arg1Of viruses,and
R27 T95 T93 arg2Of and,against
R28 T97 T95 arg2Of pathogens,and
R29 T97 T96 arg1Of pathogens,other
R30 T99 T98 arg2Of responding,by
R31 T99 T100 arg1Of responding,to
R32 T103 T100 arg2Of molecules,to
R33 T103 T101 arg1Of molecules,specific
R34 T103 T102 arg1Of molecules,microbial
R35 T106 T104 arg1Of virus,Influenza
R36 T106 T105 arg1Of virus,A
R37 T106 T107 arg1Of virus,(
R38 T106 T110 arg1Of virus,produces
R39 T108 T107 arg2Of IAV,(
R40 T109 T107 arg3Of ),(
R41 T110 T113 arg1Of produces,as
R42 T112 T110 arg2Of RNA,produces
R43 T112 T111 arg1Of RNA,double-stranded
R44 T115 T113 arg2Of intermediate,as
R45 T115 T114 arg1Of intermediate,an
R46 T115 T116 arg1Of intermediate,during
R47 T120 T116 arg2Of cycle,during
R48 T120 T117 arg1Of cycle,the
R49 T120 T118 arg1Of cycle,replication
R50 T120 T119 arg1Of cycle,life
R51 T120 T121 arg1Of cycle,","
R52 T120 T122 arg1Of cycle,which
R53 T120 T123 arg1Of cycle,activates
R54 T120 T131 arg1Of cycle,induces
R55 T123 T130 arg1Of activates,and
R56 T129 T123 arg2Of RIG-I,activates
R57 T129 T124 arg1Of RIG-I,the
R58 T129 T125 arg1Of RIG-I,intracellular
R59 T129 T126 arg1Of RIG-I,pathogen
R60 T129 T127 arg1Of RIG-I,recognition
R61 T129 T128 arg1Of RIG-I,receptor
R62 T131 T130 arg2Of induces,and
R63 T133 T131 arg2Of production,induces
R64 T133 T132 arg1Of production,the
R65 T133 T134 arg1Of production,of
R66 T136 T135 arg1Of cytokines,proinflammatory
R67 T136 T137 arg1Of cytokines,and
R68 T137 T134 arg2Of and,of
R69 T139 T137 arg2Of interferon,and
R70 T139 T138 arg1Of interferon,antiviral
R71 T140 T153 arg1Of Understanding,is
R72 T140 T154 arg1Of Understanding,of
R73 T142 T140 arg2Of mechanisms,Understanding
R74 T142 T141 arg1Of mechanisms,the
R75 T142 T143 arg1Of mechanisms,that
R76 T142 T144 arg1Of mechanisms,regulate
R77 T147 T144 arg2Of responses,regulate
R78 T147 T145 arg1Of responses,innate
R79 T147 T146 arg1Of responses,immune
R80 T147 T148 arg1Of responses,to
R81 T149 T150 arg1Of IAV,and
R82 T150 T148 arg2Of and,to
R83 T152 T150 arg2Of viruses,and
R84 T152 T151 arg1Of viruses,other
R85 T153 T157 modOf is,to
R86 T154 T153 arg2Of of,is
R87 T156 T154 arg2Of importance,of
R88 T156 T155 arg1Of importance,key
R89 T158 T157 arg1Of develop,to
R90 T161 T158 arg2Of strategies,develop
R91 T161 T159 arg1Of strategies,novel
R92 T161 T160 arg1Of strategies,therapeutic
R93 T163 T164 arg1Of we,used
R95 T164 T162 arg1Of used,Here

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T41 275-304 Protein denotes pathogen recognition receptor
T42 305-310 Protein denotes RIG-I

GO-BP

Id Subject Object Predicate Lexical cue
T58 443-459 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses
T57 0-15 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T46 436-459 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune responses
T48 436-459 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune responses
T50 436-459 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune responses
T52 436-459 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune responses
T54 436-459 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune responses
T56 436-459 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune responses

GO-CC

Id Subject Object Predicate Lexical cue
T61 261-274 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T27 393-546 Sentence denotes Understanding the mechanisms that regulate innate immune responses to IAV and other viruses is of key importance to develop novel therapeutic strategies.
T26 134-392 Sentence denotes Influenza A virus (IAV) produces double-stranded RNA as an intermediate during the replication life cycle, which activates the intracellular pathogen recognition receptor RIG-I and induces the production of proinflammatory cytokines and antiviral interferon.
T5 134-392 Sentence denotes Influenza A virus (IAV) produces double-stranded RNA as an intermediate during the replication life cycle, which activates the intracellular pathogen recognition receptor RIG-I and induces the production of proinflammatory cytokines and antiviral interferon.
T6 393-546 Sentence denotes Understanding the mechanisms that regulate innate immune responses to IAV and other viruses is of key importance to develop novel therapeutic strategies.

simple1

Id Subject Object Predicate Lexical cue
T67 305-310 Protein denotes RIG-I
T66 275-304 Protein denotes pathogen recognition receptor

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T608 275-304 Protein denotes pathogen recognition receptor
T609 305-310 Protein denotes RIG-I
T612 247-256 Positive_regulation denotes activates
R506 T608 T612 themeOf pathogen recognition receptor,activates
R507 T609 T612 themeOf RIG-I,activates

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T543 275-304 Protein denotes pathogen recognition receptor
T544 305-310 Protein denotes RIG-I
T547 247-256 Positive_regulation denotes activates
R498 T544 T547 themeOf RIG-I,activates

DLUT931

Id Subject Object Predicate Lexical cue
T550 275-304 Protein denotes pathogen recognition receptor
T551 305-310 Protein denotes RIG-I
T554 247-256 Positive_regulation denotes activates
R501 T550 T554 themeOf pathogen recognition receptor,activates
R502 T551 T554 themeOf RIG-I,activates

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T651 323-391 Gene_expression denotes the production of proinflammatory cytokines and antiviral interferon
T650 323-391 Gene_expression denotes the production of proinflammatory cytokines and antiviral interferon
T649 257-311 Localization denotes the intracellular pathogen recognition receptor RIG-I
T642 257-310 Protein denotes the intracellular pathogen recognition receptor RIG-I
T640 190-205 Entity denotes an intermediate
T631 167-186 Protein denotes double-stranded RNA
T615 341-366 Protein denotes proinflammatory cytokines
T623 371-380 Entity denotes antiviral
T628 371-391 Protein denotes antiviral interferon
T629 101-132 Entity denotes to specific microbial molecules
T634 257-310 Protein denotes the intracellular pathogen recognition receptor RIG-I
T637 261-274 Entity denotes intracellular
R510 T615 T651 themeOf proinflammatory cytokines,the production of proinflammatory cytokines and antiviral interferon
R513 T628 T650 themeOf antiviral interferon,the production of proinflammatory cytokines and antiviral interferon
R515 T634 T649 themeOf the intracellular pathogen recognition receptor RIG-I,the intracellular pathogen recognition receptor RIG-I
R516 T637 T649 locationOf intracellular,the intracellular pathogen recognition receptor RIG-I

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T398 555-559 VBD denotes used
T397 552-554 PRP denotes we
T396 547-551 RB denotes Here
T395 545-546 . denotes .
T394 535-545 NNS denotes strategies
T393 523-534 JJ denotes therapeutic
T392 517-522 JJ denotes novel
T391 509-516 VB denotes develop
T390 506-508 TO denotes to
T389 495-505 NN denotes importance
T388 491-494 JJ denotes key
T387 488-490 IN denotes of
T386 485-487 VBZ denotes is
T385 477-484 NNS denotes viruses
T384 471-476 JJ denotes other
T383 467-470 CC denotes and
T382 463-466 NNP denotes IAV
T381 460-462 TO denotes to
T380 450-459 NNS denotes responses
T379 443-449 JJ denotes immune
T378 436-442 JJ denotes innate
T377 427-435 VBP denotes regulate
T376 422-426 WDT denotes that
T375 411-421 NNS denotes mechanisms
T374 407-410 DT denotes the
T373 393-406 VBG denotes Understanding
T372 391-392 . denotes .
T371 381-391 NN denotes interferon
T370 371-380 JJ denotes antiviral
T369 367-370 CC denotes and
T368 357-366 NNS denotes cytokines
T367 341-356 JJ denotes proinflammatory
T366 338-340 IN denotes of
T365 327-337 NN denotes production
T364 323-326 DT denotes the
T363 315-322 VBZ denotes induces
T362 311-314 CC denotes and
T361 305-310 NNP denotes RIG-I
T360 296-304 NN denotes receptor
T359 284-295 NN denotes recognition
T358 275-283 NN denotes pathogen
T357 261-274 JJ denotes intracellular
T356 257-260 DT denotes the
T355 247-256 VBZ denotes activates
T354 241-246 WDT denotes which
T353 239-240 , denotes ,
T352 234-239 NN denotes cycle
T351 229-233 NN denotes life
T350 217-228 NN denotes replication
T349 213-216 DT denotes the
T348 206-212 IN denotes during
T347 193-205 JJ denotes intermediate
T346 190-192 DT denotes an
T345 187-189 IN denotes as
T344 183-186 NNP denotes RNA
T343 167-182 JJ denotes double-stranded
T342 158-166 VBZ denotes produces
T341 156-157 -RRB- denotes )
T340 153-156 NNP denotes IAV
T339 152-153 -LRB- denotes (
T338 146-151 NN denotes virus
T337 144-145 NNP denotes A
T336 134-143 NNP denotes Influenza
T335 132-133 . denotes .
T334 123-132 NNS denotes molecules
T333 113-122 JJ denotes microbial
T332 104-112 JJ denotes specific
T331 101-103 TO denotes to
T330 90-100 VBG denotes responding
T329 87-89 IN denotes by
T328 77-86 NNS denotes pathogens
T327 71-76 JJ denotes other
T326 67-70 CC denotes and
T325 59-66 NNS denotes viruses
T324 51-58 IN denotes against
T323 43-50 NN denotes defense
T322 40-42 IN denotes of
T321 35-39 NN denotes line
T320 29-34 JJ denotes first
T319 25-28 DT denotes the
T318 16-24 VBZ denotes provides
T317 7-15 NN denotes response
T316 0-6 JJ denotes immune
R236 T316 T317 amod immune,response
R237 T317 T318 nsubj response,provides
R239 T319 T321 det the,line
R240 T320 T321 amod first,line
R241 T321 T318 dobj line,provides
R242 T322 T321 prep of,line
R243 T323 T322 pobj defense,of
R244 T324 T321 prep against,line
R245 T325 T324 pobj viruses,against
R246 T326 T325 cc and,viruses
R247 T327 T328 amod other,pathogens
R248 T328 T325 conj pathogens,viruses
R249 T329 T318 prep by,provides
R250 T330 T329 pcomp responding,by
R251 T331 T330 prep to,responding
R252 T332 T334 amod specific,molecules
R253 T333 T334 amod microbial,molecules
R254 T334 T331 pobj molecules,to
R255 T335 T318 punct .,provides
R256 T336 T342 nsubj Influenza,produces
R257 T337 T338 det A,virus
R258 T338 T336 appos virus,Influenza
R259 T339 T340 punct (,IAV
R260 T340 T338 appos IAV,virus
R261 T341 T338 punct ),virus
R262 T342 T342 ROOT produces,produces
R263 T343 T344 amod double-stranded,RNA
R264 T344 T342 dobj RNA,produces
R265 T345 T342 prep as,produces
R266 T346 T347 det an,intermediate
R267 T347 T345 pobj intermediate,as
R268 T348 T342 prep during,produces
R269 T349 T352 det the,cycle
R270 T350 T352 compound replication,cycle
R271 T351 T352 compound life,cycle
R272 T352 T348 pobj cycle,during
R273 T353 T352 punct ",",cycle
R274 T354 T355 nsubj which,activates
R275 T355 T352 relcl activates,cycle
R276 T356 T359 det the,recognition
R277 T357 T359 amod intracellular,recognition
R278 T358 T359 compound pathogen,recognition
R279 T359 T355 dobj recognition,activates
R280 T360 T361 compound receptor,RIG-I
R281 T361 T359 appos RIG-I,recognition
R282 T362 T355 cc and,activates
R283 T363 T355 conj induces,activates
R284 T364 T365 det the,production
R285 T365 T363 dobj production,induces
R286 T366 T365 prep of,production
R287 T367 T368 amod proinflammatory,cytokines
R288 T368 T366 pobj cytokines,of
R289 T369 T368 cc and,cytokines
R290 T370 T371 amod antiviral,interferon
R291 T371 T368 conj interferon,cytokines
R292 T372 T342 punct .,produces
R293 T373 T386 csubj Understanding,is
R294 T374 T375 det the,mechanisms
R295 T375 T373 dobj mechanisms,Understanding
R296 T376 T377 nsubj that,regulate
R297 T377 T375 relcl regulate,mechanisms
R298 T378 T380 amod innate,responses
R299 T379 T380 amod immune,responses
R300 T380 T377 dobj responses,regulate
R301 T381 T380 prep to,responses
R302 T382 T381 pobj IAV,to
R303 T383 T382 cc and,IAV
R304 T384 T385 amod other,viruses
R305 T385 T382 conj viruses,IAV
R306 T386 T386 ROOT is,is
R307 T387 T386 prep of,is
R308 T388 T389 amod key,importance
R309 T389 T387 pobj importance,of
R310 T390 T391 aux to,develop
R311 T391 T386 advcl develop,is
R312 T392 T394 amod novel,strategies
R313 T393 T394 amod therapeutic,strategies
R314 T394 T391 dobj strategies,develop
R315 T395 T386 punct .,is
R316 T396 T398 advmod Here,used
R317 T397 T398 nsubj we,used
R318 T398 T398 ROOT used,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T568 315-322 Positive_regulation denotes induces
T567 327-337 Gene_expression denotes production
T566 381-391 Protein denotes interferon
T565 305-310 Protein denotes RIG-I
R457 T566 T567 themeOf interferon,production
R458 T567 T568 themeOf production,induces

testone

Id Subject Object Predicate Lexical cue
T7 305-310 Protein denotes RIG-I
T6 275-304 Protein denotes pathogen recognition receptor