
PMC:3291650 / 158-720
Annnotations
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20 | 305-310 | Protein | denotes | RIG-I |
T19 | 275-304 | Protein | denotes | pathogen recognition receptor |
T15 | 305-310 | Protein | denotes | RIG-I |
T14 | 275-304 | Protein | denotes | pathogen recognition receptor |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T164 | 555-559 | VB | denotes | used |
T163 | 552-554 | PRP | denotes | we |
T162 | 547-551 | RB | denotes | Here |
T161 | 535-545 | NN | denotes | strategies |
T160 | 523-534 | JJ | denotes | therapeutic |
T159 | 517-522 | JJ | denotes | novel |
T158 | 509-516 | VB | denotes | develop |
T157 | 506-508 | TO | denotes | to |
T156 | 495-505 | NN | denotes | importance |
T155 | 491-494 | JJ | denotes | key |
T154 | 488-490 | IN | denotes | of |
T153 | 485-487 | VB | denotes | is |
T152 | 477-484 | NN | denotes | viruses |
T151 | 471-476 | JJ | denotes | other |
T150 | 467-470 | CC | denotes | and |
T149 | 463-466 | NN | denotes | IAV |
T148 | 460-462 | TO | denotes | to |
T147 | 450-459 | NN | denotes | responses |
T146 | 443-449 | JJ | denotes | immune |
T145 | 436-442 | JJ | denotes | innate |
T144 | 427-435 | VB | denotes | regulate |
T143 | 422-426 | WDT | denotes | that |
T142 | 411-421 | NN | denotes | mechanisms |
T141 | 407-410 | DT | denotes | the |
T140 | 393-406 | VB | denotes | Understanding |
T139 | 381-391 | NN | denotes | interferon |
T138 | 371-380 | JJ | denotes | antiviral |
T137 | 367-370 | CC | denotes | and |
T136 | 357-366 | NN | denotes | cytokines |
T135 | 341-356 | JJ | denotes | proinflammatory |
T134 | 338-340 | IN | denotes | of |
T133 | 327-337 | NN | denotes | production |
T132 | 323-326 | DT | denotes | the |
T131 | 315-322 | VB | denotes | induces |
T130 | 311-314 | CC | denotes | and |
T129 | 305-310 | NN | denotes | RIG-I |
T128 | 296-304 | NN | denotes | receptor |
T127 | 284-295 | NN | denotes | recognition |
T126 | 275-283 | NN | denotes | pathogen |
T125 | 261-274 | JJ | denotes | intracellular |
T124 | 257-260 | DT | denotes | the |
T123 | 247-256 | VB | denotes | activates |
T122 | 241-246 | WDT | denotes | which |
T121 | 239-240 | -COMMA- | denotes | , |
T120 | 234-239 | NN | denotes | cycle |
T119 | 229-233 | NN | denotes | life |
T118 | 217-228 | NN | denotes | replication |
T117 | 213-216 | DT | denotes | the |
T116 | 206-212 | IN | denotes | during |
T115 | 193-205 | NN | denotes | intermediate |
T114 | 190-192 | DT | denotes | an |
T113 | 187-189 | IN | denotes | as |
T112 | 183-186 | NN | denotes | RNA |
T111 | 167-182 | JJ | denotes | double-stranded |
T110 | 158-166 | VB | denotes | produces |
T109 | 156-157 | -RRB- | denotes | ) |
T108 | 153-156 | NN | denotes | IAV |
T107 | 152-153 | -LRB- | denotes | ( |
T106 | 146-151 | NN | denotes | virus |
T105 | 144-145 | NN | denotes | A |
T104 | 134-143 | NN | denotes | Influenza |
T103 | 123-132 | NN | denotes | molecules |
T102 | 113-122 | JJ | denotes | microbial |
T101 | 104-112 | JJ | denotes | specific |
T100 | 101-103 | TO | denotes | to |
T99 | 90-100 | VB | denotes | responding |
T98 | 87-89 | IN | denotes | by |
T97 | 77-86 | NN | denotes | pathogens |
T96 | 71-76 | JJ | denotes | other |
T95 | 67-70 | CC | denotes | and |
T94 | 59-66 | NN | denotes | viruses |
T93 | 51-58 | IN | denotes | against |
T92 | 43-50 | NN | denotes | defense |
T91 | 40-42 | IN | denotes | of |
T90 | 35-39 | NN | denotes | line |
T89 | 29-34 | JJ | denotes | first |
T88 | 25-28 | DT | denotes | the |
T87 | 16-24 | VB | denotes | provides |
T86 | 7-15 | NN | denotes | response |
T85 | 0-6 | JJ | denotes | immune |
R16 | T86 | T85 | arg1Of | response,immune |
R17 | T86 | T87 | arg1Of | response,provides |
R18 | T86 | T99 | arg1Of | response,responding |
R19 | T87 | T98 | arg1Of | provides,by |
R20 | T90 | T87 | arg2Of | line,provides |
R21 | T90 | T88 | arg1Of | line,the |
R22 | T90 | T89 | arg1Of | line,first |
R23 | T90 | T91 | arg1Of | line,of |
R24 | T90 | T93 | arg1Of | line,against |
R25 | T92 | T91 | arg2Of | defense,of |
R26 | T94 | T95 | arg1Of | viruses,and |
R27 | T95 | T93 | arg2Of | and,against |
R28 | T97 | T95 | arg2Of | pathogens,and |
R29 | T97 | T96 | arg1Of | pathogens,other |
R30 | T99 | T98 | arg2Of | responding,by |
R31 | T99 | T100 | arg1Of | responding,to |
R32 | T103 | T100 | arg2Of | molecules,to |
R33 | T103 | T101 | arg1Of | molecules,specific |
R34 | T103 | T102 | arg1Of | molecules,microbial |
R35 | T106 | T104 | arg1Of | virus,Influenza |
R36 | T106 | T105 | arg1Of | virus,A |
R37 | T106 | T107 | arg1Of | virus,( |
R38 | T106 | T110 | arg1Of | virus,produces |
R39 | T108 | T107 | arg2Of | IAV,( |
R40 | T109 | T107 | arg3Of | ),( |
R41 | T110 | T113 | arg1Of | produces,as |
R42 | T112 | T110 | arg2Of | RNA,produces |
R43 | T112 | T111 | arg1Of | RNA,double-stranded |
R44 | T115 | T113 | arg2Of | intermediate,as |
R45 | T115 | T114 | arg1Of | intermediate,an |
R46 | T115 | T116 | arg1Of | intermediate,during |
R47 | T120 | T116 | arg2Of | cycle,during |
R48 | T120 | T117 | arg1Of | cycle,the |
R49 | T120 | T118 | arg1Of | cycle,replication |
R50 | T120 | T119 | arg1Of | cycle,life |
R51 | T120 | T121 | arg1Of | cycle,"," |
R52 | T120 | T122 | arg1Of | cycle,which |
R53 | T120 | T123 | arg1Of | cycle,activates |
R54 | T120 | T131 | arg1Of | cycle,induces |
R55 | T123 | T130 | arg1Of | activates,and |
R56 | T129 | T123 | arg2Of | RIG-I,activates |
R57 | T129 | T124 | arg1Of | RIG-I,the |
R58 | T129 | T125 | arg1Of | RIG-I,intracellular |
R59 | T129 | T126 | arg1Of | RIG-I,pathogen |
R60 | T129 | T127 | arg1Of | RIG-I,recognition |
R61 | T129 | T128 | arg1Of | RIG-I,receptor |
R62 | T131 | T130 | arg2Of | induces,and |
R63 | T133 | T131 | arg2Of | production,induces |
R64 | T133 | T132 | arg1Of | production,the |
R65 | T133 | T134 | arg1Of | production,of |
R66 | T136 | T135 | arg1Of | cytokines,proinflammatory |
R67 | T136 | T137 | arg1Of | cytokines,and |
R68 | T137 | T134 | arg2Of | and,of |
R69 | T139 | T137 | arg2Of | interferon,and |
R70 | T139 | T138 | arg1Of | interferon,antiviral |
R71 | T140 | T153 | arg1Of | Understanding,is |
R72 | T140 | T154 | arg1Of | Understanding,of |
R73 | T142 | T140 | arg2Of | mechanisms,Understanding |
R74 | T142 | T141 | arg1Of | mechanisms,the |
R75 | T142 | T143 | arg1Of | mechanisms,that |
R76 | T142 | T144 | arg1Of | mechanisms,regulate |
R77 | T147 | T144 | arg2Of | responses,regulate |
R78 | T147 | T145 | arg1Of | responses,innate |
R79 | T147 | T146 | arg1Of | responses,immune |
R80 | T147 | T148 | arg1Of | responses,to |
R81 | T149 | T150 | arg1Of | IAV,and |
R82 | T150 | T148 | arg2Of | and,to |
R83 | T152 | T150 | arg2Of | viruses,and |
R84 | T152 | T151 | arg1Of | viruses,other |
R85 | T153 | T157 | modOf | is,to |
R86 | T154 | T153 | arg2Of | of,is |
R87 | T156 | T154 | arg2Of | importance,of |
R88 | T156 | T155 | arg1Of | importance,key |
R89 | T158 | T157 | arg1Of | develop,to |
R90 | T161 | T158 | arg2Of | strategies,develop |
R91 | T161 | T159 | arg1Of | strategies,novel |
R92 | T161 | T160 | arg1Of | strategies,therapeutic |
R93 | T163 | T164 | arg1Of | we,used |
R95 | T164 | T162 | arg1Of | used,Here |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T41 | 275-304 | Protein | denotes | pathogen recognition receptor |
T42 | 305-310 | Protein | denotes | RIG-I |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T58 | 443-459 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
T57 | 0-15 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune response |
T46 | 436-459 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immune responses |
T48 | 436-459 | http://purl.obolibrary.org/obo/GO_0002227 | denotes | innate immune responses |
T50 | 436-459 | http://purl.obolibrary.org/obo/GO_0045088 | denotes | innate immune responses |
T52 | 436-459 | http://purl.obolibrary.org/obo/GO_0002218 | denotes | innate immune responses |
T54 | 436-459 | http://purl.obolibrary.org/obo/GO_0045089 | denotes | innate immune responses |
T56 | 436-459 | http://purl.obolibrary.org/obo/GO_0045824 | denotes | innate immune responses |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T61 | 261-274 | http://purl.obolibrary.org/obo/GO_0005622 | denotes | intracellular |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T27 | 393-546 | Sentence | denotes | Understanding the mechanisms that regulate innate immune responses to IAV and other viruses is of key importance to develop novel therapeutic strategies. |
T26 | 134-392 | Sentence | denotes | Influenza A virus (IAV) produces double-stranded RNA as an intermediate during the replication life cycle, which activates the intracellular pathogen recognition receptor RIG-I and induces the production of proinflammatory cytokines and antiviral interferon. |
T5 | 134-392 | Sentence | denotes | Influenza A virus (IAV) produces double-stranded RNA as an intermediate during the replication life cycle, which activates the intracellular pathogen recognition receptor RIG-I and induces the production of proinflammatory cytokines and antiviral interferon. |
T6 | 393-546 | Sentence | denotes | Understanding the mechanisms that regulate innate immune responses to IAV and other viruses is of key importance to develop novel therapeutic strategies. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T67 | 305-310 | Protein | denotes | RIG-I |
T66 | 275-304 | Protein | denotes | pathogen recognition receptor |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T608 | 275-304 | Protein | denotes | pathogen recognition receptor |
T609 | 305-310 | Protein | denotes | RIG-I |
T612 | 247-256 | Positive_regulation | denotes | activates |
R506 | T608 | T612 | themeOf | pathogen recognition receptor,activates |
R507 | T609 | T612 | themeOf | RIG-I,activates |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T543 | 275-304 | Protein | denotes | pathogen recognition receptor |
T544 | 305-310 | Protein | denotes | RIG-I |
T547 | 247-256 | Positive_regulation | denotes | activates |
R498 | T544 | T547 | themeOf | RIG-I,activates |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T550 | 275-304 | Protein | denotes | pathogen recognition receptor |
T551 | 305-310 | Protein | denotes | RIG-I |
T554 | 247-256 | Positive_regulation | denotes | activates |
R501 | T550 | T554 | themeOf | pathogen recognition receptor,activates |
R502 | T551 | T554 | themeOf | RIG-I,activates |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T651 | 323-391 | Gene_expression | denotes | the production of proinflammatory cytokines and antiviral interferon |
T650 | 323-391 | Gene_expression | denotes | the production of proinflammatory cytokines and antiviral interferon |
T649 | 257-311 | Localization | denotes | the intracellular pathogen recognition receptor RIG-I |
T642 | 257-310 | Protein | denotes | the intracellular pathogen recognition receptor RIG-I |
T640 | 190-205 | Entity | denotes | an intermediate |
T631 | 167-186 | Protein | denotes | double-stranded RNA |
T615 | 341-366 | Protein | denotes | proinflammatory cytokines |
T623 | 371-380 | Entity | denotes | antiviral |
T628 | 371-391 | Protein | denotes | antiviral interferon |
T629 | 101-132 | Entity | denotes | to specific microbial molecules |
T634 | 257-310 | Protein | denotes | the intracellular pathogen recognition receptor RIG-I |
T637 | 261-274 | Entity | denotes | intracellular |
R510 | T615 | T651 | themeOf | proinflammatory cytokines,the production of proinflammatory cytokines and antiviral interferon |
R513 | T628 | T650 | themeOf | antiviral interferon,the production of proinflammatory cytokines and antiviral interferon |
R515 | T634 | T649 | themeOf | the intracellular pathogen recognition receptor RIG-I,the intracellular pathogen recognition receptor RIG-I |
R516 | T637 | T649 | locationOf | intracellular,the intracellular pathogen recognition receptor RIG-I |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T398 | 555-559 | VBD | denotes | used |
T397 | 552-554 | PRP | denotes | we |
T396 | 547-551 | RB | denotes | Here |
T395 | 545-546 | . | denotes | . |
T394 | 535-545 | NNS | denotes | strategies |
T393 | 523-534 | JJ | denotes | therapeutic |
T392 | 517-522 | JJ | denotes | novel |
T391 | 509-516 | VB | denotes | develop |
T390 | 506-508 | TO | denotes | to |
T389 | 495-505 | NN | denotes | importance |
T388 | 491-494 | JJ | denotes | key |
T387 | 488-490 | IN | denotes | of |
T386 | 485-487 | VBZ | denotes | is |
T385 | 477-484 | NNS | denotes | viruses |
T384 | 471-476 | JJ | denotes | other |
T383 | 467-470 | CC | denotes | and |
T382 | 463-466 | NNP | denotes | IAV |
T381 | 460-462 | TO | denotes | to |
T380 | 450-459 | NNS | denotes | responses |
T379 | 443-449 | JJ | denotes | immune |
T378 | 436-442 | JJ | denotes | innate |
T377 | 427-435 | VBP | denotes | regulate |
T376 | 422-426 | WDT | denotes | that |
T375 | 411-421 | NNS | denotes | mechanisms |
T374 | 407-410 | DT | denotes | the |
T373 | 393-406 | VBG | denotes | Understanding |
T372 | 391-392 | . | denotes | . |
T371 | 381-391 | NN | denotes | interferon |
T370 | 371-380 | JJ | denotes | antiviral |
T369 | 367-370 | CC | denotes | and |
T368 | 357-366 | NNS | denotes | cytokines |
T367 | 341-356 | JJ | denotes | proinflammatory |
T366 | 338-340 | IN | denotes | of |
T365 | 327-337 | NN | denotes | production |
T364 | 323-326 | DT | denotes | the |
T363 | 315-322 | VBZ | denotes | induces |
T362 | 311-314 | CC | denotes | and |
T361 | 305-310 | NNP | denotes | RIG-I |
T360 | 296-304 | NN | denotes | receptor |
T359 | 284-295 | NN | denotes | recognition |
T358 | 275-283 | NN | denotes | pathogen |
T357 | 261-274 | JJ | denotes | intracellular |
T356 | 257-260 | DT | denotes | the |
T355 | 247-256 | VBZ | denotes | activates |
T354 | 241-246 | WDT | denotes | which |
T353 | 239-240 | , | denotes | , |
T352 | 234-239 | NN | denotes | cycle |
T351 | 229-233 | NN | denotes | life |
T350 | 217-228 | NN | denotes | replication |
T349 | 213-216 | DT | denotes | the |
T348 | 206-212 | IN | denotes | during |
T347 | 193-205 | JJ | denotes | intermediate |
T346 | 190-192 | DT | denotes | an |
T345 | 187-189 | IN | denotes | as |
T344 | 183-186 | NNP | denotes | RNA |
T343 | 167-182 | JJ | denotes | double-stranded |
T342 | 158-166 | VBZ | denotes | produces |
T341 | 156-157 | -RRB- | denotes | ) |
T340 | 153-156 | NNP | denotes | IAV |
T339 | 152-153 | -LRB- | denotes | ( |
T338 | 146-151 | NN | denotes | virus |
T337 | 144-145 | NNP | denotes | A |
T336 | 134-143 | NNP | denotes | Influenza |
T335 | 132-133 | . | denotes | . |
T334 | 123-132 | NNS | denotes | molecules |
T333 | 113-122 | JJ | denotes | microbial |
T332 | 104-112 | JJ | denotes | specific |
T331 | 101-103 | TO | denotes | to |
T330 | 90-100 | VBG | denotes | responding |
T329 | 87-89 | IN | denotes | by |
T328 | 77-86 | NNS | denotes | pathogens |
T327 | 71-76 | JJ | denotes | other |
T326 | 67-70 | CC | denotes | and |
T325 | 59-66 | NNS | denotes | viruses |
T324 | 51-58 | IN | denotes | against |
T323 | 43-50 | NN | denotes | defense |
T322 | 40-42 | IN | denotes | of |
T321 | 35-39 | NN | denotes | line |
T320 | 29-34 | JJ | denotes | first |
T319 | 25-28 | DT | denotes | the |
T318 | 16-24 | VBZ | denotes | provides |
T317 | 7-15 | NN | denotes | response |
T316 | 0-6 | JJ | denotes | immune |
R236 | T316 | T317 | amod | immune,response |
R237 | T317 | T318 | nsubj | response,provides |
R239 | T319 | T321 | det | the,line |
R240 | T320 | T321 | amod | first,line |
R241 | T321 | T318 | dobj | line,provides |
R242 | T322 | T321 | prep | of,line |
R243 | T323 | T322 | pobj | defense,of |
R244 | T324 | T321 | prep | against,line |
R245 | T325 | T324 | pobj | viruses,against |
R246 | T326 | T325 | cc | and,viruses |
R247 | T327 | T328 | amod | other,pathogens |
R248 | T328 | T325 | conj | pathogens,viruses |
R249 | T329 | T318 | prep | by,provides |
R250 | T330 | T329 | pcomp | responding,by |
R251 | T331 | T330 | prep | to,responding |
R252 | T332 | T334 | amod | specific,molecules |
R253 | T333 | T334 | amod | microbial,molecules |
R254 | T334 | T331 | pobj | molecules,to |
R255 | T335 | T318 | punct | .,provides |
R256 | T336 | T342 | nsubj | Influenza,produces |
R257 | T337 | T338 | det | A,virus |
R258 | T338 | T336 | appos | virus,Influenza |
R259 | T339 | T340 | punct | (,IAV |
R260 | T340 | T338 | appos | IAV,virus |
R261 | T341 | T338 | punct | ),virus |
R262 | T342 | T342 | ROOT | produces,produces |
R263 | T343 | T344 | amod | double-stranded,RNA |
R264 | T344 | T342 | dobj | RNA,produces |
R265 | T345 | T342 | prep | as,produces |
R266 | T346 | T347 | det | an,intermediate |
R267 | T347 | T345 | pobj | intermediate,as |
R268 | T348 | T342 | prep | during,produces |
R269 | T349 | T352 | det | the,cycle |
R270 | T350 | T352 | compound | replication,cycle |
R271 | T351 | T352 | compound | life,cycle |
R272 | T352 | T348 | pobj | cycle,during |
R273 | T353 | T352 | punct | ",",cycle |
R274 | T354 | T355 | nsubj | which,activates |
R275 | T355 | T352 | relcl | activates,cycle |
R276 | T356 | T359 | det | the,recognition |
R277 | T357 | T359 | amod | intracellular,recognition |
R278 | T358 | T359 | compound | pathogen,recognition |
R279 | T359 | T355 | dobj | recognition,activates |
R280 | T360 | T361 | compound | receptor,RIG-I |
R281 | T361 | T359 | appos | RIG-I,recognition |
R282 | T362 | T355 | cc | and,activates |
R283 | T363 | T355 | conj | induces,activates |
R284 | T364 | T365 | det | the,production |
R285 | T365 | T363 | dobj | production,induces |
R286 | T366 | T365 | prep | of,production |
R287 | T367 | T368 | amod | proinflammatory,cytokines |
R288 | T368 | T366 | pobj | cytokines,of |
R289 | T369 | T368 | cc | and,cytokines |
R290 | T370 | T371 | amod | antiviral,interferon |
R291 | T371 | T368 | conj | interferon,cytokines |
R292 | T372 | T342 | punct | .,produces |
R293 | T373 | T386 | csubj | Understanding,is |
R294 | T374 | T375 | det | the,mechanisms |
R295 | T375 | T373 | dobj | mechanisms,Understanding |
R296 | T376 | T377 | nsubj | that,regulate |
R297 | T377 | T375 | relcl | regulate,mechanisms |
R298 | T378 | T380 | amod | innate,responses |
R299 | T379 | T380 | amod | immune,responses |
R300 | T380 | T377 | dobj | responses,regulate |
R301 | T381 | T380 | prep | to,responses |
R302 | T382 | T381 | pobj | IAV,to |
R303 | T383 | T382 | cc | and,IAV |
R304 | T384 | T385 | amod | other,viruses |
R305 | T385 | T382 | conj | viruses,IAV |
R306 | T386 | T386 | ROOT | is,is |
R307 | T387 | T386 | prep | of,is |
R308 | T388 | T389 | amod | key,importance |
R309 | T389 | T387 | pobj | importance,of |
R310 | T390 | T391 | aux | to,develop |
R311 | T391 | T386 | advcl | develop,is |
R312 | T392 | T394 | amod | novel,strategies |
R313 | T393 | T394 | amod | therapeutic,strategies |
R314 | T394 | T391 | dobj | strategies,develop |
R315 | T395 | T386 | punct | .,is |
R316 | T396 | T398 | advmod | Here,used |
R317 | T397 | T398 | nsubj | we,used |
R318 | T398 | T398 | ROOT | used,used |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T568 | 315-322 | Positive_regulation | denotes | induces |
T567 | 327-337 | Gene_expression | denotes | production |
T566 | 381-391 | Protein | denotes | interferon |
T565 | 305-310 | Protein | denotes | RIG-I |
R457 | T566 | T567 | themeOf | interferon,production |
R458 | T567 | T568 | themeOf | production,induces |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7 | 305-310 | Protein | denotes | RIG-I |
T6 | 275-304 | Protein | denotes | pathogen recognition receptor |