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PMC:3291650 / 14142-14363 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T4699 208-215 Entity denotes nucleus
T4698 187-200 Localization denotes translocation
T4697 133-137 Protein denotes IKKε
T4696 124-128 Protein denotes TBK1
T4695 35-50 Phosphorylation denotes phosphorylation
T4694 20-29 Positive_regulation denotes activated
T4693 0-4 Protein denotes IRF3
T4611 133-137 Protein denotes IKKε
T4610 124-128 Protein denotes TBK1
T4609 0-4 Protein denotes IRF3
R3205 T4693 T4698 themeOf IRF3,translocation
R3206 T4693 T4694 themeOf IRF3,activated
R3207 T4697 T4698 themeOf IKKε,translocation
R3208 T4699 T4698 locationOf nucleus,translocation

2_test

Id Subject Object Predicate Lexical cue
22396652-15210742-98461856 139-141 15210742 denotes 58
22396652-9566918-98461857 217-219 9566918 denotes 59

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5705 219-220 -RRB- denotes ]
T5704 217-219 CD denotes 59
T5703 216-217 -LRB- denotes [
T5702 208-215 NN denotes nucleus
T5701 204-207 DT denotes the
T5700 201-203 TO denotes to
T5699 187-200 NN denotes translocation
T5698 176-186 JJ denotes subsequent
T5697 172-175 CC denotes and
T5696 159-171 NN denotes dimerization
T5695 155-158 PRP-DOLLAR- denotes its
T5694 152-154 TO denotes to
T5693 144-151 VB denotes leading
T5692 142-143 -COMMA- denotes ,
T5691 141-142 -RRB- denotes ]
T5690 139-141 CD denotes 58
T5689 138-139 -LRB- denotes [
T5688 133-137 NN denotes IKKε
T5687 129-132 CC denotes and
T5686 124-128 NN denotes TBK1
T5685 116-123 NN denotes kinases
T5684 107-115 JJ denotes IKK-like
T5683 103-106 DT denotes the
T5682 100-102 IN denotes by
T5681 91-99 NN denotes residues
T5680 84-90 NN denotes serine
T5679 75-83 JJ denotes terminal
T5678 66-74 NN denotes carboxyl
T5677 63-65 IN denotes of
T5676 56-62 NN denotes series
T5675 54-55 DT denotes a
T5674 51-53 IN denotes of
T5673 35-50 NN denotes phosphorylation
T5672 30-34 IN denotes upon
T5671 20-29 VB denotes activated
T5670 17-19 VB denotes be
T5669 14-16 TO denotes to
T5668 8-13 VB denotes known
T5667 5-7 VB denotes is
T5666 0-4 NN denotes IRF3
R3925 T5666 T5667 arg1Of IRF3,is
R3926 T5666 T5668 arg2Of IRF3,known
R3927 T5666 T5670 arg1Of IRF3,be
R3928 T5666 T5671 arg2Of IRF3,activated
R3929 T5668 T5667 arg2Of known,is
R3930 T5671 T5668 arg3Of activated,known
R3931 T5671 T5669 arg1Of activated,to
R3932 T5671 T5670 arg2Of activated,be
R3933 T5671 T5672 arg1Of activated,upon
R3934 T5671 T5692 arg1Of activated,","
R3935 T5671 T5693 modOf activated,leading
R3936 T5671 T5703 arg1Of activated,[
R3937 T5673 T5672 arg2Of phosphorylation,upon
R3938 T5673 T5674 arg1Of phosphorylation,of
R3939 T5676 T5674 arg2Of series,of
R3940 T5676 T5675 arg1Of series,a
R3941 T5676 T5677 arg1Of series,of
R3942 T5676 T5682 arg1Of series,by
R3943 T5681 T5677 arg2Of residues,of
R3944 T5681 T5678 arg1Of residues,carboxyl
R3945 T5681 T5679 arg1Of residues,terminal
R3946 T5681 T5680 arg1Of residues,serine
R3947 T5685 T5683 arg1Of kinases,the
R3948 T5685 T5684 arg1Of kinases,IKK-like
R3949 T5686 T5685 arg1Of TBK1,kinases
R3950 T5686 T5687 arg1Of TBK1,and
R3951 T5687 T5682 arg2Of and,by
R3952 T5688 T5687 arg2Of IKKε,and
R3953 T5688 T5689 arg1Of IKKε,[
R3954 T5690 T5689 arg2Of 58,[
R3955 T5691 T5689 arg3Of ],[
R3956 T5693 T5694 arg1Of leading,to
R3957 T5696 T5697 arg1Of dimerization,and
R3958 T5697 T5694 arg2Of and,to
R3959 T5697 T5695 arg1Of and,its
R3960 T5697 T5700 arg1Of and,to
R3961 T5699 T5697 arg2Of translocation,and
R3962 T5699 T5698 arg1Of translocation,subsequent
R3963 T5702 T5700 arg2Of nucleus,to
R3964 T5702 T5701 arg1Of nucleus,the
R3965 T5704 T5703 arg2Of 59,[
R3966 T5705 T5703 arg3Of ],[

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T4891 0-4 Antecedent denotes IRF3
T4890 155-158 Anaphor denotes its
R3329 T4890 T4891 boundBy its,IRF3

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4931 133-137 Protein denotes IKKε
T4930 124-128 Protein denotes TBK1
T4929 0-4 Protein denotes IRF3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6691 124-128 http://www.uniprot.org/uniprot/Q9UHD2 denotes TBK1
T6666 0-4 http://www.uniprot.org/uniprot/Q14653 denotes IRF3

GO-BP

Id Subject Object Predicate Lexical cue
T4961 124-128 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1
T4960 107-110 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK
T4957 35-50 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-MF

Id Subject Object Predicate Lexical cue
T4964 124-128 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1
T4963 107-110 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

GO-CC

Id Subject Object Predicate Lexical cue
T4974 208-215 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus

sentences

Id Subject Object Predicate Lexical cue
T4743 0-221 Sentence denotes IRF3 is known to be activated upon phosphorylation of a series of carboxyl terminal serine residues by the IKK-like kinases TBK1 and IKKε [58], leading to its dimerization and subsequent translocation to the nucleus [59].
T86 0-221 Sentence denotes IRF3 is known to be activated upon phosphorylation of a series of carboxyl terminal serine residues by the IKK-like kinases TBK1 and IKKε [58], leading to its dimerization and subsequent translocation to the nucleus [59].

simple1

Id Subject Object Predicate Lexical cue
T5069 133-137 Protein denotes IKKε
T5068 124-128 Protein denotes TBK1
T5067 0-4 Protein denotes IRF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7377 20-29 Positive_regulation denotes activated
T7328 133-137 Protein denotes IKKε
T7327 124-128 Protein denotes TBK1
T7326 0-4 Protein denotes IRF3
R5274 T7326 T7377 themeOf IRF3,activated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6735 133-137 Protein denotes IKKε
T6734 124-128 Protein denotes TBK1
T6733 0-4 Protein denotes IRF3

DLUT931

Id Subject Object Predicate Lexical cue
T6963 20-29 Positive_regulation denotes activated
T6909 133-137 Protein denotes IKKε
T6908 124-128 Protein denotes TBK1
T6907 0-4 Protein denotes IRF3
R5023 T6907 T6963 themeOf IRF3,activated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7520 63-99 Entity denotes of carboxyl terminal serine residues
T7474 84-90 Entity denotes serine
T7472 103-128 Protein denotes the IKK-like kinases TBK1
T7469 204-215 Entity denotes the nucleus
T7466 0-4 Protein denotes IRF3
T7454 133-142 Protein denotes IKKε [58]
T7429 103-128 Protein denotes the IKK-like kinases TBK1
T7422 155-171 Entity denotes its dimerization

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6489 220-221 . denotes .
T6488 219-220 NNP denotes ]
T6487 217-219 CD denotes 59
T6486 216-217 NNP denotes [
T6485 208-215 NN denotes nucleus
T6484 204-207 DT denotes the
T6483 201-203 TO denotes to
T6482 187-200 NN denotes translocation
T6481 176-186 JJ denotes subsequent
T6480 172-175 CC denotes and
T6479 159-171 NN denotes dimerization
T6478 155-158 PRP$ denotes its
T6477 152-154 TO denotes to
T6476 144-151 VBG denotes leading
T6475 142-143 , denotes ,
T6474 141-142 NNP denotes ]
T6473 139-141 CD denotes 58
T6472 138-139 NNP denotes [
T6471 133-137 NNP denotes IKKε
T6470 129-132 CC denotes and
T6469 124-128 CD denotes TBK1
T6468 116-123 NNS denotes kinases
T6467 107-115 JJ denotes IKK-like
T6466 103-106 DT denotes the
T6465 100-102 IN denotes by
T6464 91-99 NNS denotes residues
T6463 84-90 NN denotes serine
T6462 75-83 NN denotes terminal
T6461 66-74 NN denotes carboxyl
T6460 63-65 IN denotes of
T6459 56-62 NN denotes series
T6458 54-55 DT denotes a
T6457 51-53 IN denotes of
T6456 35-50 NN denotes phosphorylation
T6455 30-34 IN denotes upon
T6454 20-29 VBN denotes activated
T6453 17-19 VB denotes be
T6452 14-16 TO denotes to
T6451 8-13 VBN denotes known
T6450 5-7 VBZ denotes is
T6449 0-4 CD denotes IRF3
R4680 T6449 T6451 nsubjpass IRF3,known
R4687 T6450 T6451 auxpass is,known
R4692 T6451 T6451 ROOT known,known
R4695 T6452 T6454 aux to,activated
R4700 T6453 T6454 auxpass be,activated
R4704 T6454 T6451 xcomp activated,known
R4708 T6455 T6454 prep upon,activated
R4713 T6456 T6455 pobj phosphorylation,upon
R4716 T6457 T6456 prep of,phosphorylation
R4717 T6458 T6459 det a,series
R4718 T6459 T6457 pobj series,of
R4721 T6460 T6459 prep of,series
R4725 T6461 T6462 compound carboxyl,terminal
R4729 T6462 T6464 compound terminal,residues
R4732 T6463 T6464 compound serine,residues
R4739 T6464 T6460 pobj residues,of
R4744 T6465 T6459 prep by,series
R4746 T6466 T6468 det the,kinases
R4747 T6467 T6468 amod IKK-like,kinases
R4751 T6468 T6465 pobj kinases,by
R4755 T6469 T6468 appos TBK1,kinases
R4759 T6470 T6469 cc and,TBK1
R4763 T6471 T6472 compound IKKε,[
R4766 T6472 T6469 conj [,TBK1
R4770 T6473 T6474 nummod 58,]
R4775 T6474 T6474 ROOT ],]
R4779 T6475 T6474 punct ",",]
R4782 T6476 T6474 acl leading,]
R4790 T6477 T6476 prep to,leading
R4795 T6478 T6479 poss its,dimerization
R4798 T6479 T6477 pobj dimerization,to
R4802 T6480 T6479 cc and,dimerization
R4806 T6481 T6482 amod subsequent,translocation
R4810 T6482 T6479 conj translocation,dimerization
R4814 T6483 T6477 prep to,to
R4819 T6484 T6485 det the,nucleus
R4820 T6485 T6483 pobj nucleus,to
R4821 T6486 T6477 pobj [,to
R4823 T6487 T6488 nummod 59,]
R4826 T6488 T6486 dobj ],[
R4831 T6489 T6451 punct .,known

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7094 208-215 Entity denotes nucleus
T7093 20-29 Positive_regulation denotes activated
T7092 124-128 Protein denotes TBK1
T7091 107-123 Protein denotes IKK-like kinases
T7090 0-4 Protein denotes IRF3
R5113 T7090 T7093 themeOf IRF3,activated
R5117 T7093 T7092 Cause activated,TBK1

testone

Id Subject Object Predicate Lexical cue
T4560 208-215 Entity denotes nucleus
T4559 159-171 Binding denotes dimerization
T4558 84-99 Entity denotes serine residues
T4557 35-50 Phosphorylation denotes phosphorylation
T4509 133-137 Protein denotes IKKε
T4508 124-128 Protein denotes TBK1
T4507 0-4 Protein denotes IRF3
R3137 T4507 T4559 themeOf IRF3,dimerization
R3138 T4508 T4559 themeOf TBK1,dimerization
R3161 T4558 T4557 themeOf serine residues,phosphorylation
R3162 T4558 T4507 partOf serine residues,IRF3