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PMC:3291650 / 13774-13943 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T4688 152-156 Protein denotes IκBα
T4687 137-148 Protein_catabolism denotes degradation
T4686 127-136 Positive_regulation denotes sustained
T4685 107-122 Phosphorylation denotes phosphorylation
T4684 97-106 Positive_regulation denotes increased
T4683 32-41 Negative_regulation denotes deficient
T4607 152-156 Protein denotes IκBα
R3195 T4683 T4684 causeOf deficient,increased
R3196 T4683 T4686 causeOf deficient,sustained
R3197 T4685 T4684 themeOf phosphorylation,increased
R3198 T4685 T4686 causeOf phosphorylation,sustained
R3199 T4687 T4686 themeOf degradation,sustained
R3200 T4688 T4687 themeOf IκBα,degradation
R3201 T4688 T4685 themeOf IκBα,phosphorylation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5627 167-168 -RRB- denotes )
T5626 165-167 NN denotes 1B
T5625 158-164 NN denotes figure
T5624 157-158 -LRB- denotes (
T5623 152-156 NN denotes IκBα
T5622 149-151 IN denotes of
T5621 137-148 NN denotes degradation
T5620 127-136 JJ denotes sustained
T5619 123-126 CC denotes and
T5618 107-122 NN denotes phosphorylation
T5617 97-106 VB denotes increased
T5616 94-96 IN denotes by
T5615 84-93 VB denotes indicated
T5614 81-83 IN denotes as
T5613 70-80 NN denotes activation
T5612 64-69 NN denotes NF-κB
T5611 55-63 VB denotes enhanced
T5610 48-54 VB denotes showed
T5609 42-47 NN denotes cells
T5608 32-41 JJ denotes deficient
T5607 28-31 NN denotes A20
T5606 26-27 -COMMA- denotes ,
T5605 22-26 NN denotes BMBM
T5604 17-21 NN denotes type
T5603 12-16 JJ denotes wild
T5602 9-11 TO denotes to
T5601 0-8 VB denotes Compared
R3861 T5602 T5601 arg2Of to,Compared
R3862 T5605 T5602 arg2Of BMBM,to
R3863 T5605 T5603 arg1Of BMBM,wild
R3864 T5605 T5604 arg1Of BMBM,type
R3865 T5609 T5607 arg1Of cells,A20
R3866 T5609 T5608 arg1Of cells,deficient
R3867 T5609 T5610 arg1Of cells,showed
R3868 T5610 T5601 arg1Of showed,Compared
R3869 T5610 T5606 arg1Of showed,","
R3870 T5610 T5614 arg1Of showed,as
R3871 T5613 T5610 arg2Of activation,showed
R3872 T5613 T5611 arg2Of activation,enhanced
R3873 T5613 T5612 arg1Of activation,NF-κB
R3874 T5615 T5614 arg2Of indicated,as
R3875 T5618 T5617 arg2Of phosphorylation,increased
R3876 T5618 T5619 arg1Of phosphorylation,and
R3877 T5619 T5615 arg1Of and,indicated
R3878 T5619 T5616 arg2Of and,by
R3879 T5619 T5622 arg1Of and,of
R3880 T5621 T5619 arg2Of degradation,and
R3881 T5621 T5620 arg1Of degradation,sustained
R3882 T5623 T5622 arg2Of IκBα,of
R3883 T5623 T5624 arg1Of IκBα,(
R3884 T5626 T5624 arg2Of 1B,(
R3885 T5626 T5625 arg1Of 1B,figure
R3886 T5627 T5624 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4927 152-156 Protein denotes IκBα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6686 152-156 http://www.uniprot.org/uniprot/P25963 denotes IκBα
T6654 28-31 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-BP

Id Subject Object Predicate Lexical cue
T4959 137-148 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T4956 107-122 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T4971 42-47 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T4741 0-169 Sentence denotes Compared to wild type BMBM, A20 deficient cells showed enhanced NF-κB activation as indicated by increased phosphorylation and sustained degradation of IκBα (figure 1B).
T84 0-169 Sentence denotes Compared to wild type BMBM, A20 deficient cells showed enhanced NF-κB activation as indicated by increased phosphorylation and sustained degradation of IκBα (figure 1B).

simple1

Id Subject Object Predicate Lexical cue
T5065 152-156 Protein denotes IκBα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7374 137-148 Protein_catabolism denotes degradation
T7373 107-122 Phosphorylation denotes phosphorylation
T7372 97-106 Positive_regulation denotes increased
T7324 152-156 Protein denotes IκBα
R5312 T7373 T7372 themeOf phosphorylation,increased
R5269 T7324 T7372 themeOf IκBα,increased
R5270 T7324 T7373 themeOf IκBα,phosphorylation
R5271 T7324 T7374 themeOf IκBα,degradation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6731 152-156 Protein denotes IκBα
T6783 107-122 Phosphorylation denotes phosphorylation
T6782 97-106 Positive_regulation denotes increased
T6781 137-148 Protein_catabolism denotes degradation
R4931 T6731 T6783 themeOf IκBα,phosphorylation
R4932 T6731 T6781 themeOf IκBα,degradation
R4950 T6783 T6782 themeOf phosphorylation,increased

DLUT931

Id Subject Object Predicate Lexical cue
T6960 97-106 Positive_regulation denotes increased
T6959 137-148 Protein_catabolism denotes degradation
T6958 107-122 Phosphorylation denotes phosphorylation
T6905 152-156 Protein denotes IκBα
R5017 T6905 T6958 themeOf IκBα,phosphorylation
R5019 T6905 T6959 themeOf IκBα,degradation
R5020 T6958 T6960 themeOf phosphorylation,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7553 127-168 Protein_catabolism denotes sustained degradation of IκBα (figure 1B)
T7527 97-122 Positive_regulation denotes increased phosphorylation
T7523 55-80 Positive_regulation denotes enhanced NF-κB activation
T7507 28-47 Entity denotes A20 deficient cells
T7497 55-80 Protein denotes enhanced NF-κB activation
T7461 149-168 Protein denotes of IκBα (figure 1B)
T7447 28-31 Protein denotes A20
R5375 T7461 T7553 themeOf of IκBα (figure 1B),sustained degradation of IκBα (figure 1B)
R5379 T7497 T7523 themeOf enhanced NF-κB activation,enhanced NF-κB activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6409 168-169 . denotes .
T6408 167-168 -RRB- denotes )
T6407 165-167 NN denotes 1B
T6406 158-164 NN denotes figure
T6405 157-158 -LRB- denotes (
T6404 152-156 NNP denotes IκBα
T6403 149-151 IN denotes of
T6402 137-148 NN denotes degradation
T6401 127-136 VBD denotes sustained
T6400 123-126 CC denotes and
T6399 107-122 NN denotes phosphorylation
T6398 97-106 VBN denotes increased
T6397 94-96 IN denotes by
T6396 84-93 VBN denotes indicated
T6395 81-83 IN denotes as
T6394 70-80 NN denotes activation
T6393 64-69 NN denotes NF-κB
T6392 55-63 JJ denotes enhanced
T6391 48-54 VBD denotes showed
T6390 42-47 NNS denotes cells
T6389 32-41 JJ denotes deficient
T6388 28-31 NNP denotes A20
T6387 26-27 , denotes ,
T6386 22-26 NNP denotes BMBM
T6385 17-21 NN denotes type
T6384 12-16 JJ denotes wild
T6383 9-11 TO denotes to
T6382 0-8 VBN denotes Compared
R4652 T6382 T6391 prep Compared,showed
R4654 T6383 T6382 prep to,Compared
R4655 T6384 T6385 amod wild,type
R4656 T6385 T6386 compound type,BMBM
R4658 T6386 T6383 pobj BMBM,to
R4659 T6387 T6386 punct ",",BMBM
R4660 T6388 T6390 amod A20,cells
R4662 T6389 T6390 amod deficient,cells
R4664 T6390 T6391 nsubj cells,showed
R4666 T6391 T6391 ROOT showed,showed
R4667 T6392 T6394 amod enhanced,activation
R4668 T6393 T6394 compound NF-κB,activation
R4670 T6394 T6391 dobj activation,showed
R4671 T6395 T6396 mark as,indicated
R4672 T6396 T6391 advcl indicated,showed
R4674 T6397 T6396 agent by,indicated
R4675 T6398 T6399 amod increased,phosphorylation
R4677 T6399 T6397 pobj phosphorylation,by
R4678 T6400 T6399 cc and,phosphorylation
R4679 T6401 T6402 amod sustained,degradation
R4681 T6402 T6399 conj degradation,phosphorylation
R4682 T6403 T6402 prep of,degradation
R4683 T6404 T6403 pobj IκBα,of
R4684 T6405 T6407 punct (,1B
R4685 T6406 T6407 compound figure,1B
R4686 T6407 T6404 appos 1B,IκBα
R4688 T6408 T6407 punct ),1B
R4689 T6409 T6391 punct .,showed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7082 97-106 Positive_regulation denotes increased
T7081 97-106 Positive_regulation denotes increased
T7080 70-80 Positive_regulation denotes activation
T7079 55-63 Positive_regulation denotes enhanced
T7078 137-148 Protein_catabolism denotes degradation
T7077 107-122 Phosphorylation denotes phosphorylation
T7076 70-80 Positive_regulation denotes activation
T7075 152-156 Protein denotes IκBα
T7074 64-69 Protein denotes NF-κB
R5136 T7074 T7076 themeOf NF-κB,activation
R5138 T7075 T7077 themeOf IκBα,phosphorylation
R5139 T7075 T7078 themeOf IκBα,degradation
R5140 T7076 T7079 themeOf activation,enhanced
R5141 T7077 T7081 themeOf phosphorylation,increased
R5142 T7078 T7082 themeOf degradation,increased
R5143 T7079 T7080 themeOf enhanced,activation

testone

Id Subject Object Predicate Lexical cue
T4552 137-148 Protein_catabolism denotes degradation
T4551 107-122 Phosphorylation denotes phosphorylation
T4550 97-106 Positive_regulation denotes increased
T4549 32-41 Negative_regulation denotes deficient
T4505 152-156 Protein denotes IκBα
R3134 T4505 T4552 themeOf IκBα,degradation
R3135 T4505 T4551 themeOf IκBα,phosphorylation
R3156 T4549 T4550 causeOf deficient,increased
R3157 T4551 T4550 themeOf phosphorylation,increased
R3158 T4552 T4550 themeOf degradation,increased