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PMC:3291650 / 13317-13472 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T4679 99-103 Protein denotes IRF3
T4678 74-78 Protein denotes TLR3
T4606 99-103 Protein denotes IRF3
T4605 74-78 Protein denotes TLR3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5538 153-154 -RRB- denotes )
T5537 148-153 VB denotes shown
T5536 144-147 RB denotes not
T5535 139-143 NN denotes data
T5534 138-139 -LRB- denotes (
T5533 127-137 NN denotes production
T5532 118-126 NN denotes cytokine
T5531 115-117 CC denotes or
T5530 104-114 NN denotes activation
T5529 99-103 NN denotes IRF3
T5528 95-98 CC denotes and
T5527 89-94 NN denotes NF-κB
T5526 79-88 JJ denotes dependent
T5525 74-78 NN denotes TLR3
T5524 62-73 JJ denotes significant
T5523 55-61 VB denotes induce
T5522 52-54 TO denotes to
T5521 45-51 JJ denotes unable
T5520 41-44 VB denotes was
T5519 39-40 -RRB- denotes )
T5518 38-39 NN denotes C
T5517 37-38 SYM denotes :
T5516 36-37 NN denotes I
T5515 35-36 -LRB- denotes (
T5514 31-35 NN denotes poly
T5513 28-30 IN denotes of
T5512 14-27 NN denotes concentration
T5511 9-13 DT denotes this
T5510 7-8 -COMMA- denotes ,
T5509 3-7 NN denotes note
T5508 0-2 IN denotes Of
R3766 T5509 T5508 arg2Of note,Of
R3767 T5512 T5511 arg1Of concentration,this
R3768 T5512 T5513 arg1Of concentration,of
R3769 T5512 T5520 arg1Of concentration,was
R3770 T5512 T5521 arg1Of concentration,unable
R3771 T5512 T5523 arg1Of concentration,induce
R3772 T5514 T5513 arg2Of poly,of
R3773 T5514 T5515 arg1Of poly,(
R3774 T5516 T5515 arg2Of I,(
R3775 T5516 T5517 arg1Of I,:
R3776 T5516 T5518 arg1Of I,C
R3777 T5519 T5515 arg3Of ),(
R3778 T5520 T5508 arg1Of was,Of
R3779 T5520 T5510 arg1Of was,","
R3780 T5521 T5520 arg2Of unable,was
R3781 T5523 T5521 arg2Of induce,unable
R3782 T5523 T5522 arg1Of induce,to
R3783 T5526 T5524 arg1Of dependent,significant
R3784 T5526 T5525 arg1Of dependent,TLR3
R3785 T5527 T5528 arg1Of NF-κB,and
R3786 T5529 T5528 arg2Of IRF3,and
R3787 T5530 T5526 arg1Of activation,dependent
R3788 T5530 T5527 arg1Of activation,NF-κB
R3789 T5530 T5529 arg1Of activation,IRF3
R3790 T5530 T5531 arg1Of activation,or
R3791 T5531 T5523 arg2Of or,induce
R3792 T5533 T5531 arg2Of production,or
R3793 T5533 T5532 arg1Of production,cytokine
R3794 T5533 T5534 arg1Of production,(
R3795 T5535 T5534 arg2Of data,(
R3796 T5535 T5537 arg2Of data,shown
R3797 T5537 T5536 arg1Of shown,not
R3798 T5538 T5534 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4926 99-103 Protein denotes IRF3
T4925 74-78 Protein denotes TLR3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6685 74-78 http://www.uniprot.org/uniprot/O15455 denotes TLR3
T6665 99-103 http://www.uniprot.org/uniprot/Q14653 denotes IRF3

GO-BP

Id Subject Object Predicate Lexical cue
T4955 118-137 http://purl.obolibrary.org/obo/GO_0001816 denotes cytokine production
T4954 104-137 http://purl.obolibrary.org/obo/GO_0001819 denotes activation or cytokine production
T4953 104-137 http://purl.obolibrary.org/obo/GO_1903557 denotes activation or cytokine production

sentences

Id Subject Object Predicate Lexical cue
T4738 0-155 Sentence denotes Of note, this concentration of poly(I:C) was unable to induce significant TLR3 dependent NF-κB and IRF3 activation or cytokine production (data not shown).
T81 0-155 Sentence denotes Of note, this concentration of poly(I:C) was unable to induce significant TLR3 dependent NF-κB and IRF3 activation or cytokine production (data not shown).

simple1

Id Subject Object Predicate Lexical cue
T5064 99-103 Protein denotes IRF3
T5063 74-78 Protein denotes TLR3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7371 55-61 Positive_regulation denotes induce
T7370 104-114 Positive_regulation denotes activation
T7323 99-103 Protein denotes IRF3
T7322 74-78 Protein denotes TLR3
R5310 T7370 T7371 themeOf activation,induce
R5268 T7323 T7370 themeOf IRF3,activation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6730 99-103 Protein denotes IRF3
T6729 74-78 Protein denotes TLR3
T6780 55-61 Positive_regulation denotes induce
T6779 104-114 Positive_regulation denotes activation
R4930 T6730 T6779 themeOf IRF3,activation
R4949 T6779 T6780 themeOf activation,induce

DLUT931

Id Subject Object Predicate Lexical cue
T6957 55-61 Positive_regulation denotes induce
T6956 104-114 Positive_regulation denotes activation
T6904 99-103 Protein denotes IRF3
T6903 74-78 Protein denotes TLR3
R5015 T6904 T6956 themeOf IRF3,activation
R5018 T6956 T6957 themeOf activation,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7562 99-114 Positive_regulation denotes IRF3 activation
T7510 99-103 Protein denotes IRF3
T7500 62-94 Protein denotes significant TLR3 dependent NF-κB
T7449 74-78 Protein denotes TLR3
T7421 28-40 Entity denotes of poly(I:C)
R5337 T7510 T7562 themeOf IRF3,IRF3 activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6317 154-155 . denotes .
T6316 153-154 -RRB- denotes )
T6315 148-153 VBN denotes shown
T6314 144-147 RB denotes not
T6313 139-143 NNS denotes data
T6312 138-139 -LRB- denotes (
T6311 127-137 NN denotes production
T6310 118-126 NN denotes cytokine
T6309 115-117 CC denotes or
T6308 104-114 NN denotes activation
T6307 99-103 JJ denotes IRF3
T6306 95-98 CC denotes and
T6305 89-94 NN denotes NF-κB
T6304 79-88 JJ denotes dependent
T6303 74-78 CD denotes TLR3
T6302 62-73 JJ denotes significant
T6301 55-61 VB denotes induce
T6300 52-54 TO denotes to
T6299 45-51 JJ denotes unable
T6298 41-44 VBD denotes was
T6297 39-40 -RRB- denotes )
T6296 38-39 NNP denotes C
T6295 37-38 : denotes :
T6294 36-37 PRP denotes I
T6293 35-36 -LRB- denotes (
T6292 31-35 NN denotes poly
T6291 28-30 IN denotes of
T6290 14-27 NN denotes concentration
T6289 9-13 DT denotes this
T6288 7-8 , denotes ,
T6287 3-7 NN denotes note
T6286 0-2 IN denotes Of
R4525 T6286 T6298 prep Of,was
R4526 T6287 T6286 pobj note,Of
R4527 T6288 T6298 punct ",",was
R4529 T6289 T6290 det this,concentration
R4530 T6290 T6298 nsubj concentration,was
R4531 T6291 T6290 prep of,concentration
R4532 T6292 T6291 pobj poly,of
R4533 T6293 T6296 punct (,C
R4534 T6294 T6296 nsubj I,C
R4535 T6295 T6296 punct :,C
R4537 T6296 T6290 appos C,concentration
R4538 T6297 T6296 punct ),C
R4539 T6298 T6298 ROOT was,was
R4541 T6299 T6298 acomp unable,was
R4542 T6300 T6301 aux to,induce
R4544 T6301 T6299 xcomp induce,unable
R4545 T6302 T6305 amod significant,NF-κB
R4546 T6303 T6305 nummod TLR3,NF-κB
R4547 T6304 T6305 amod dependent,NF-κB
R4549 T6305 T6301 dobj NF-κB,induce
R4550 T6306 T6305 cc and,NF-κB
R4551 T6307 T6308 amod IRF3,activation
R4553 T6308 T6305 conj activation,NF-κB
R4554 T6309 T6308 cc or,activation
R4555 T6310 T6308 conj cytokine,activation
R4557 T6311 T6308 conj production,activation
R4558 T6312 T6315 punct (,shown
R4561 T6313 T6315 nsubjpass data,shown
R4562 T6314 T6315 neg not,shown
R4564 T6315 T6298 conj shown,was
R4565 T6316 T6315 punct ),shown
R4566 T6317 T6298 punct .,was

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7070 55-61 Positive_regulation denotes induce
T7069 55-61 Positive_regulation denotes induce
T7068 104-114 Positive_regulation denotes activation
T7067 104-114 Positive_regulation denotes activation
T7066 99-103 Protein denotes IRF3
T7065 74-94 Protein denotes TLR3 dependent NF-κB
R5128 T7065 T7067 themeOf TLR3 dependent NF-κB,activation
R5129 T7066 T7068 themeOf IRF3,activation
R5130 T7067 T7069 themeOf activation,induce
R5132 T7068 T7070 themeOf activation,induce

testone

Id Subject Object Predicate Lexical cue
T4546 55-61 Positive_regulation denotes induce
T4504 99-103 Protein denotes IRF3
T4503 74-78 Protein denotes TLR3
R3133 T4503 T4546 themeOf TLR3,induce