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PMC:3291650 / 13083-13316 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T4677 223-227 Protein denotes MDA5
T4676 205-210 Protein denotes RIG-I
T4675 187-191 Binding denotes bind
T4674 17-22 Protein denotes RIG-I
T4604 223-227 Protein denotes MDA5
T4603 205-210 Protein denotes RIG-I
T4602 17-22 Protein denotes RIG-I
R3189 T4674 T4675 themeOf RIG-I,bind
R3190 T4676 T4675 themeOf RIG-I,bind
R3191 T4677 T4675 themeOf MDA5,bind

2_test

Id Subject Object Predicate Lexical cue
22396652-18591409-98461855 229-231 18591409 denotes 57

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5507 231-232 -RRB- denotes ]
T5506 229-231 CD denotes 57
T5505 228-229 -LRB- denotes [
T5504 223-227 NN denotes MDA5
T5503 218-222 IN denotes than
T5502 211-217 RB denotes rather
T5501 205-210 NN denotes RIG-I
T5500 196-204 VB denotes activate
T5499 192-195 CC denotes and
T5498 187-191 VB denotes bind
T5497 172-186 RB denotes preferentially
T5496 169-171 TO denotes to
T5495 163-168 VB denotes known
T5494 160-162 VB denotes is
T5493 154-159 WDT denotes which
T5492 152-153 -COMMA- denotes ,
T5491 151-152 -RRB- denotes )
T5490 150-151 NN denotes C
T5489 149-150 SYM denotes :
T5488 148-149 NN denotes I
T5487 147-148 -LRB- denotes (
T5486 143-147 NN denotes poly
T5485 141-142 -RRB- denotes )
T5484 138-141 NN denotes LMW
T5483 137-138 -LRB- denotes (
T5482 130-136 NN denotes weight
T5481 120-129 JJ denotes molecular
T5480 116-119 JJ denotes low
T5479 113-115 IN denotes of
T5478 105-112 NN denotes amounts
T5477 97-104 JJ denotes minimal
T5476 92-96 IN denotes with
T5475 86-91 NN denotes cells
T5474 78-85 NN denotes control
T5473 73-77 NN denotes type
T5472 68-72 JJ denotes wild
T5471 64-67 CC denotes and
T5470 59-63 NN denotes BMDM
T5469 48-58 NN denotes A20myel-KO
T5468 36-47 VB denotes transfected
T5467 33-35 PRP denotes we
T5466 31-32 -COMMA- denotes ,
T5465 23-31 NN denotes receptor
T5464 17-22 NN denotes RIG-I
T5463 13-16 DT denotes the
T5462 3-12 VB denotes stimulate
T5461 0-2 TO denotes To
R3715 T5462 T5461 arg1Of stimulate,To
R3716 T5465 T5462 arg2Of receptor,stimulate
R3717 T5465 T5463 arg1Of receptor,the
R3718 T5465 T5464 arg1Of receptor,RIG-I
R3719 T5467 T5462 arg1Of we,stimulate
R3720 T5467 T5468 arg1Of we,transfected
R3721 T5468 T5461 modOf transfected,To
R3722 T5468 T5466 arg1Of transfected,","
R3723 T5470 T5469 arg1Of BMDM,A20myel-KO
R3724 T5470 T5471 arg1Of BMDM,and
R3725 T5471 T5468 arg2Of and,transfected
R3726 T5471 T5476 arg1Of and,with
R3727 T5475 T5471 arg2Of cells,and
R3728 T5475 T5472 arg1Of cells,wild
R3729 T5475 T5473 arg1Of cells,type
R3730 T5475 T5474 arg1Of cells,control
R3731 T5478 T5476 arg2Of amounts,with
R3732 T5478 T5477 arg1Of amounts,minimal
R3733 T5478 T5479 arg1Of amounts,of
R3734 T5484 T5483 arg2Of LMW,(
R3735 T5485 T5483 arg3Of ),(
R3736 T5486 T5479 arg2Of poly,of
R3737 T5486 T5480 arg1Of poly,low
R3738 T5486 T5481 arg1Of poly,molecular
R3739 T5486 T5482 arg1Of poly,weight
R3740 T5486 T5483 arg1Of poly,(
R3741 T5486 T5487 arg1Of poly,(
R3742 T5486 T5492 arg1Of poly,","
R3743 T5486 T5493 arg1Of poly,which
R3744 T5486 T5494 arg1Of poly,is
R3745 T5486 T5495 arg2Of poly,known
R3746 T5486 T5498 arg1Of poly,bind
R3747 T5486 T5500 arg1Of poly,activate
R3748 T5488 T5487 arg2Of I,(
R3749 T5488 T5489 arg1Of I,:
R3750 T5488 T5490 arg1Of I,C
R3751 T5491 T5487 arg3Of ),(
R3752 T5495 T5494 arg2Of known,is
R3753 T5498 T5499 arg1Of bind,and
R3754 T5499 T5495 arg3Of and,known
R3755 T5499 T5496 arg1Of and,to
R3756 T5499 T5497 arg1Of and,preferentially
R3757 T5499 T5505 arg1Of and,[
R3758 T5500 T5499 arg2Of activate,and
R3759 T5501 T5503 arg1Of RIG-I,than
R3760 T5503 T5498 arg2Of than,bind
R3761 T5503 T5500 arg2Of than,activate
R3762 T5503 T5502 arg1Of than,rather
R3763 T5504 T5503 arg2Of MDA5,than
R3764 T5506 T5505 arg2Of 57,[
R3765 T5507 T5505 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4924 223-227 Protein denotes MDA5
T4923 205-210 Protein denotes RIG-I
T4922 17-22 Protein denotes RIG-I

GO-CC

Id Subject Object Predicate Lexical cue
T4970 86-91 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T4737 0-233 Sentence denotes To stimulate the RIG-I receptor, we transfected A20myel-KO BMDM and wild type control cells with minimal amounts of low molecular weight (LMW) poly(I:C), which is known to preferentially bind and activate RIG-I rather than MDA5 [57].
T80 0-233 Sentence denotes To stimulate the RIG-I receptor, we transfected A20myel-KO BMDM and wild type control cells with minimal amounts of low molecular weight (LMW) poly(I:C), which is known to preferentially bind and activate RIG-I rather than MDA5 [57].

simple1

Id Subject Object Predicate Lexical cue
T5062 223-227 Protein denotes MDA5
T5061 205-210 Protein denotes RIG-I
T5060 17-22 Protein denotes RIG-I

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7369 196-204 Positive_regulation denotes activate
T7368 187-191 Binding denotes bind
T7321 223-227 Protein denotes MDA5
T7320 205-210 Protein denotes RIG-I
T7319 17-22 Protein denotes RIG-I
R5264 T7320 T7368 themeOf RIG-I,bind
R5265 T7320 T7369 themeOf RIG-I,activate
R5266 T7321 T7369 themeOf MDA5,activate

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6728 223-227 Protein denotes MDA5
T6727 205-210 Protein denotes RIG-I
T6726 17-22 Protein denotes RIG-I
T6778 187-191 Binding denotes bind
T6777 196-204 Positive_regulation denotes activate
R4926 T6727 T6778 themeOf RIG-I,bind
R4927 T6727 T6777 themeOf RIG-I,activate

DLUT931

Id Subject Object Predicate Lexical cue
T6902 223-227 Protein denotes MDA5
T6901 205-210 Protein denotes RIG-I
T6900 17-22 Protein denotes RIG-I
T6955 196-204 Positive_regulation denotes activate
T6954 187-191 Binding denotes bind
T6953 3-12 Positive_regulation denotes stimulate
R5005 T6900 T6953 themeOf RIG-I,stimulate
R5008 T6901 T6954 themeOf RIG-I,bind
R5009 T6901 T6955 themeOf RIG-I,activate
R5010 T6902 T6954 themeOf MDA5,bind
R5012 T6902 T6955 themeOf MDA5,activate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7550 0-32 Positive_regulation denotes To stimulate the RIG-I receptor,
T7522 143-152 Entity denotes poly(I:C)
T7462 223-232 Protein denotes MDA5 [57]
T7455 205-210 Protein denotes RIG-I
T7413 17-22 Protein denotes RIG-I
T7407 13-32 Protein denotes the RIG-I receptor,
T7539 169-232 Positive_regulation denotes to preferentially bind and activate RIG-I rather than MDA5 [57]
R5326 T7407 T7550 themeOf "the RIG-I receptor,","To stimulate the RIG-I receptor,"
R5374 T7455 T7539 themeOf RIG-I,to preferentially bind and activate RIG-I rather than MDA5 [57]

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6285 232-233 . denotes .
T6284 231-232 NNP denotes ]
T6283 229-231 CD denotes 57
T6282 228-229 NNP denotes [
T6281 223-227 CD denotes MDA5
T6280 218-222 IN denotes than
T6279 211-217 RB denotes rather
T6278 205-210 NNP denotes RIG-I
T6277 196-204 VB denotes activate
T6276 192-195 CC denotes and
T6275 187-191 NN denotes bind
T6274 172-186 RB denotes preferentially
T6273 169-171 TO denotes to
T6272 163-168 VBN denotes known
T6271 160-162 VBZ denotes is
T6270 154-159 WDT denotes which
T6269 152-153 , denotes ,
T6268 151-152 -RRB- denotes )
T6267 150-151 NNP denotes C
T6266 149-150 : denotes :
T6265 148-149 PRP denotes I
T6264 147-148 -LRB- denotes (
T6263 143-147 NN denotes poly
T6262 141-142 -RRB- denotes )
T6261 138-141 NNP denotes LMW
T6260 137-138 -LRB- denotes (
T6259 130-136 NN denotes weight
T6258 120-129 JJ denotes molecular
T6257 116-119 JJ denotes low
T6256 113-115 IN denotes of
T6255 105-112 NNS denotes amounts
T6254 97-104 JJ denotes minimal
T6253 92-96 IN denotes with
T6252 86-91 NNS denotes cells
T6251 78-85 NN denotes control
T6250 73-77 NN denotes type
T6249 68-72 JJ denotes wild
T6248 64-67 CC denotes and
T6247 59-63 NNP denotes BMDM
T6246 48-58 JJ denotes A20myel-KO
T6245 36-47 VBD denotes transfected
T6244 33-35 PRP denotes we
T6243 31-32 , denotes ,
T6242 23-31 NN denotes receptor
T6241 17-22 NN denotes RIG-I
T6240 13-16 DT denotes the
T6239 3-12 VB denotes stimulate
T6238 0-2 TO denotes To
R4459 T6238 T6239 aux To,stimulate
R4460 T6239 T6245 advcl stimulate,transfected
R4461 T6240 T6242 det the,receptor
R4463 T6241 T6242 compound RIG-I,receptor
R4464 T6242 T6239 dobj receptor,stimulate
R4465 T6243 T6245 punct ",",transfected
R4467 T6244 T6245 nsubj we,transfected
R4468 T6245 T6245 ROOT transfected,transfected
R4469 T6246 T6247 compound A20myel-KO,BMDM
R4471 T6247 T6245 dobj BMDM,transfected
R4472 T6248 T6247 cc and,BMDM
R4473 T6249 T6250 amod wild,type
R4475 T6250 T6247 conj type,BMDM
R4476 T6251 T6252 compound control,cells
R4477 T6252 T6250 dobj cells,type
R4479 T6253 T6252 prep with,cells
R4480 T6254 T6255 amod minimal,amounts
R4481 T6255 T6253 pobj amounts,with
R4482 T6256 T6255 prep of,amounts
R4517 T6280 T6275 cc than,bind
R4518 T6281 T6284 nummod MDA5,]
R4520 T6282 T6284 nmod [,]
R4521 T6283 T6284 nummod 57,]
R4522 T6284 T6275 conj ],bind
R4523 T6285 T6245 punct .,transfected
R4484 T6257 T6259 amod low,weight
R4485 T6258 T6259 amod molecular,weight
R4487 T6259 T6256 pobj weight,of
R4488 T6260 T6259 punct (,weight
R4490 T6261 T6259 appos LMW,weight
R4491 T6262 T6263 punct ),poly
R4492 T6263 T6259 appos poly,weight
R4494 T6264 T6267 punct (,C
R4495 T6265 T6267 nsubj I,C
R4496 T6266 T6267 punct :,C
R4498 T6267 T6263 parataxis C,poly
R4499 T6268 T6267 punct ),C
R4500 T6269 T6267 punct ",",C
R4501 T6270 T6272 nsubjpass which,known
R4503 T6271 T6272 auxpass is,known
R4506 T6272 T6267 relcl known,C
R4508 T6273 T6275 aux to,bind
R4509 T6274 T6275 advmod preferentially,bind
R4510 T6275 T6272 xcomp bind,known
R4512 T6276 T6275 cc and,bind
R4513 T6277 T6275 conj activate,bind
R4514 T6278 T6277 dobj RIG-I,activate
R4516 T6279 T6280 advmod rather,than

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7064 196-204 Positive_regulation denotes activate
T7063 3-12 Positive_regulation denotes stimulate
T7062 205-210 Protein denotes RIG-I
T7061 17-31 Protein denotes RIG-I receptor
R5125 T7061 T7063 themeOf RIG-I receptor,stimulate
R5126 T7062 T7064 themeOf RIG-I,activate

testone

Id Subject Object Predicate Lexical cue
T4545 187-191 Binding denotes bind
T4502 223-227 Protein denotes MDA5
T4501 205-210 Protein denotes RIG-I
T4500 17-22 Protein denotes RIG-I
R3132 T4501 T4545 themeOf RIG-I,bind