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PMC:3291650 / 11484-11814 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T19310 264-268 Protein denotes IRF3
T19309 222-226 Protein denotes IκBα
T19332 269-284 Phosphorylation denotes phosphorylation
T19331 264-268 Protein denotes IRF3
T19330 247-258 Protein_catabolism denotes degradation
T19329 227-242 Phosphorylation denotes phosphorylation
T19328 222-226 Protein denotes IκBα
R14501 T19328 T19330 themeOf IκBα,degradation
R14502 T19328 T19329 themeOf IκBα,phosphorylation
R14503 T19331 T19332 themeOf IRF3,phosphorylation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19591 328-329 -RRB- denotes )
T19590 327-328 NN denotes B
T19589 326-327 -LRB- denotes (
T19588 317-325 NN denotes extracts
T19587 312-316 NN denotes cell
T19586 306-311 JJ denotes total
T19585 303-305 IN denotes of
T19584 288-302 NN denotes immunoblotting
T19583 285-287 IN denotes by
T19582 269-284 NN denotes phosphorylation
T19581 264-268 NN denotes IRF3
T19580 260-263 CC denotes and
T19579 258-259 -COMMA- denotes ,
T19578 247-258 NN denotes degradation
T19577 243-246 CC denotes and
T19576 227-242 NN denotes phosphorylation
T19575 222-226 NN denotes IκBα
T19574 218-221 IN denotes for
T19573 205-217 NN denotes transfection
T19572 202-204 IN denotes of
T19571 196-201 NN denotes start
T19570 192-195 DT denotes the
T19569 186-191 IN denotes after
T19568 184-185 -RRB- denotes )
T19567 177-184 NN denotes minutes
T19566 176-177 -LRB- denotes (
T19565 169-175 NN denotes points
T19564 164-168 NN denotes time
T19563 154-163 JJ denotes different
T19562 151-153 IN denotes at
T19561 142-150 VB denotes analyzed
T19560 138-141 CC denotes and
T19559 136-137 -RRB- denotes )
T19558 135-136 NN denotes C
T19557 134-135 SYM denotes :
T19556 133-134 NN denotes I
T19555 132-133 -LRB- denotes (
T19554 128-132 NN denotes poly
T19553 124-127 NN denotes LMW
T19552 119-123 IN denotes with
T19551 107-118 VB denotes transfected
T19550 102-106 VB denotes were
T19549 97-101 NN denotes BMDM
T19548 95-96 -RRB- denotes )
T19547 85-95 NN denotes A20myel-WT
T19546 84-85 -LRB- denotes (
T19545 79-83 NN denotes type
T19544 74-78 JJ denotes wild
T19543 70-73 CC denotes and
T19542 59-69 NN denotes A20myel-KO
T19541 57-58 -RRB- denotes )
T19540 54-57 NN denotes B–D
T19539 53-54 -LRB- denotes (
T19538 45-52 NN denotes set-up.
T19537 41-44 IN denotes per
T19536 33-40 NN denotes samples
T19535 31-32 CD denotes 3
T19534 28-30 IN denotes of
T19533 25-27 NN denotes SD
T19532 21-24 CC denotes +/−
T19531 12-20 NN denotes averages
T19530 8-11 VB denotes are
T19529 0-7 NN denotes Numbers
R14595 T19529 T19530 arg1Of Numbers,are
R14596 T19531 T19532 arg1Of averages,+/−
R14597 T19532 T19530 arg2Of +/−,are
R14598 T19533 T19532 arg2Of SD,+/−
R14599 T19533 T19534 arg1Of SD,of
R14600 T19533 T19550 modOf SD,were
R14601 T19536 T19534 arg2Of samples,of
R14602 T19536 T19535 arg1Of samples,3
R14603 T19536 T19537 arg1Of samples,per
R14604 T19538 T19537 arg2Of set-up.,per
R14605 T19540 T19539 arg2Of B–D,(
R14606 T19541 T19539 arg3Of ),(
R14607 T19542 T19543 arg1Of A20myel-KO,and
R14608 T19544 T19543 arg2Of wild,and
R14609 T19547 T19546 arg2Of A20myel-WT,(
R14610 T19548 T19546 arg3Of ),(
R14611 T19549 T19539 arg1Of BMDM,(
R14612 T19549 T19542 arg1Of BMDM,A20myel-KO
R14613 T19549 T19544 arg1Of BMDM,wild
R14614 T19549 T19545 arg1Of BMDM,type
R14615 T19549 T19546 arg1Of BMDM,(
R14616 T19549 T19550 arg1Of BMDM,were
R14617 T19549 T19551 arg2Of BMDM,transfected
R14618 T19549 T19561 arg2Of BMDM,analyzed
R14619 T19551 T19552 arg1Of transfected,with
R14620 T19551 T19560 arg1Of transfected,and
R14621 T19554 T19552 arg2Of poly,with
R14622 T19554 T19553 arg1Of poly,LMW
R14623 T19554 T19555 arg1Of poly,(
R14624 T19558 T19555 arg2Of C,(
R14625 T19558 T19556 arg1Of C,I
R14626 T19558 T19557 arg1Of C,:
R14627 T19559 T19555 arg3Of ),(
R14628 T19560 T19550 arg2Of and,were
R14629 T19561 T19560 arg2Of analyzed,and
R14630 T19561 T19562 arg1Of analyzed,at
R14631 T19561 T19569 arg1Of analyzed,after
R14632 T19565 T19562 arg2Of points,at
R14633 T19565 T19563 arg1Of points,different
R14634 T19565 T19564 arg1Of points,time
R14635 T19565 T19566 arg1Of points,(
R14636 T19567 T19566 arg2Of minutes,(
R14637 T19568 T19566 arg3Of ),(
R14638 T19571 T19569 arg2Of start,after
R14639 T19571 T19570 arg1Of start,the
R14640 T19571 T19572 arg1Of start,of
R14641 T19573 T19574 arg1Of transfection,for
R14642 T19573 T19580 arg1Of transfection,and
R14643 T19576 T19577 arg1Of phosphorylation,and
R14644 T19577 T19574 arg2Of and,for
R14645 T19577 T19575 arg1Of and,IκBα
R14646 T19578 T19577 arg2Of degradation,and
R14647 T19580 T19572 arg2Of and,of
R14648 T19580 T19579 arg1Of and,","
R14649 T19580 T19583 arg1Of and,by
R14650 T19582 T19580 arg2Of phosphorylation,and
R14651 T19582 T19581 arg1Of phosphorylation,IRF3
R14652 T19584 T19583 arg2Of immunoblotting,by
R14653 T19584 T19585 arg1Of immunoblotting,of
R14654 T19588 T19585 arg2Of extracts,of
R14655 T19588 T19586 arg1Of extracts,total
R14656 T19588 T19587 arg1Of extracts,cell
R14657 T19588 T19589 arg1Of extracts,(
R14658 T19590 T19589 arg2Of B,(
R14659 T19591 T19589 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T19394 264-268 Protein denotes IRF3
T19393 222-226 Protein denotes IκBα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19986 222-226 http://www.uniprot.org/uniprot/P25963 denotes IκBα
T19979 264-268 http://www.uniprot.org/uniprot/Q14653 denotes IRF3

GO-BP

Id Subject Object Predicate Lexical cue
T19414 247-258 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T19413 269-284 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T19412 227-242 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T19350 0-330 Sentence denotes Numbers are averages +/− SD of 3 samples per set-up. (B–D) A20myel-KO and wild type (A20myel-WT) BMDM were transfected with LMW poly(I:C) and analyzed at different time points (minutes) after the start of transfection for IκBα phosphorylation and degradation, and IRF3 phosphorylation by immunoblotting of total cell extracts (B).
T71 0-330 Sentence denotes Numbers are averages +/− SD of 3 samples per set-up. (B–D) A20myel-KO and wild type (A20myel-WT) BMDM were transfected with LMW poly(I:C) and analyzed at different time points (minutes) after the start of transfection for IκBα phosphorylation and degradation, and IRF3 phosphorylation by immunoblotting of total cell extracts (B).

simple1

Id Subject Object Predicate Lexical cue
T19452 264-268 Protein denotes IRF3
T19451 222-226 Protein denotes IκBα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20184 269-284 Phosphorylation denotes phosphorylation
T20183 247-258 Protein_catabolism denotes degradation
T20182 227-242 Phosphorylation denotes phosphorylation
T20168 264-268 Protein denotes IRF3
T20167 222-226 Protein denotes IκBα
R15125 T20167 T20182 themeOf IκBα,phosphorylation
R15126 T20167 T20183 themeOf IκBα,degradation
R15127 T20168 T20184 themeOf IRF3,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20020 227-242 Phosphorylation denotes phosphorylation
T20019 269-284 Phosphorylation denotes phosphorylation
T20003 264-268 Protein denotes IRF3
T20002 222-226 Protein denotes IκBα
R15051 T20002 T20020 themeOf IκBα,phosphorylation
R15052 T20003 T20019 themeOf IRF3,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T20068 269-284 Phosphorylation denotes phosphorylation
T20067 227-242 Phosphorylation denotes phosphorylation
T20051 264-268 Protein denotes IRF3
T20050 222-226 Protein denotes IκBα
R15064 T20050 T20067 themeOf IκBα,phosphorylation
R15065 T20051 T20068 themeOf IRF3,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20222 222-242 Phosphorylation denotes IκBα phosphorylation
T20221 264-302 Phosphorylation denotes IRF3 phosphorylation by immunoblotting
T20217 317-329 Entity denotes extracts (B)
T20213 303-316 Entity denotes of total cell
T20212 264-268 Protein denotes IRF3
T20194 222-226 Protein denotes IκBα
T20193 128-137 Entity denotes poly(I:C)
T20192 25-32 Entity denotes SD of 3
R15131 T20194 T20222 themeOf IκBα,IκBα phosphorylation
R15134 T20212 T20221 themeOf IRF3,IRF3 phosphorylation by immunoblotting

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19848 329-330 . denotes .
T19847 328-329 -RRB- denotes )
T19846 327-328 NNP denotes B
T19845 326-327 -LRB- denotes (
T19844 317-325 NNS denotes extracts
T19843 312-316 NN denotes cell
T19842 306-311 JJ denotes total
T19841 303-305 IN denotes of
T19840 288-302 VBG denotes immunoblotting
T19839 285-287 IN denotes by
T19838 269-284 NN denotes phosphorylation
T19837 264-268 NNP denotes IRF3
T19836 260-263 CC denotes and
T19835 258-259 , denotes ,
T19834 247-258 NN denotes degradation
T19833 243-246 CC denotes and
T19832 227-242 NN denotes phosphorylation
T19831 222-226 NNP denotes IκBα
T19830 218-221 IN denotes for
T19829 205-217 NN denotes transfection
T19828 202-204 IN denotes of
T19827 196-201 NN denotes start
T19826 192-195 DT denotes the
T19825 186-191 IN denotes after
T19824 184-185 -RRB- denotes )
T19823 177-184 NNS denotes minutes
T19822 176-177 -LRB- denotes (
T19821 169-175 NNS denotes points
T19820 164-168 NN denotes time
T19819 154-163 JJ denotes different
T19818 151-153 IN denotes at
T19817 142-150 VBD denotes analyzed
T19816 138-141 CC denotes and
T19815 136-137 -RRB- denotes )
T19814 135-136 NNP denotes C
T19813 134-135 : denotes :
T19812 133-134 PRP denotes I
T19811 132-133 -LRB- denotes (
T19810 128-132 NN denotes poly
T19809 124-127 NNP denotes LMW
T19808 119-123 IN denotes with
T19807 107-118 VBN denotes transfected
T19806 102-106 VBD denotes were
T19805 97-101 NNP denotes BMDM
T19804 95-96 -RRB- denotes )
T19803 85-95 JJ denotes A20myel-WT
T19802 84-85 -LRB- denotes (
T19801 79-83 NN denotes type
T19800 74-78 JJ denotes wild
T19799 70-73 CC denotes and
T19798 59-69 JJ denotes A20myel-KO
T19797 57-58 -RRB- denotes )
T19796 56-57 NNP denotes D
T19795 54-55 NNP denotes B
T19794 53-54 -LRB- denotes (
T19793 51-52 . denotes .
T19792 45-51 NN denotes set-up
T19791 41-44 IN denotes per
T19790 33-40 NNS denotes samples
T19789 31-32 CD denotes 3
T19788 28-30 IN denotes of
T19787 25-27 NNP denotes SD
T19786 23-24 CD denotes −
T19785 22-23 CD denotes /
T19784 21-22 VBP denotes +
T19783 12-20 NNS denotes averages
T19782 8-11 VBP denotes are
T19781 0-7 NNS denotes Numbers
R14854 T19781 T19782 nsubj Numbers,are
R14855 T19782 T19782 ROOT are,are
R14856 T19783 T19782 attr averages,are
R14857 T19784 T19782 conj +,are
R14858 T19785 T19787 nummod /,SD
R14859 T19786 T19787 compound −,SD
R14860 T19787 T19782 npadvmod SD,are
R14861 T19788 T19787 prep of,SD
R14862 T19789 T19790 nummod 3,samples
R14863 T19790 T19788 pobj samples,of
R14864 T19791 T19790 prep per,samples
R14865 T19792 T19791 pobj set-up,per
R14866 T19793 T19782 punct .,are
R14867 T19794 T19805 punct (,BMDM
R14868 T19795 T19805 nmod B,BMDM
R14869 T19796 T19795 appos D,B
R14870 T19797 T19795 punct ),B
R14871 T19798 T19795 conj A20myel-KO,B
R14872 T19799 T19798 cc and,A20myel-KO
R14873 T19800 T19801 amod wild,type
R14874 T19801 T19798 conj type,A20myel-KO
R14875 T19802 T19803 punct (,A20myel-WT
R14876 T19803 T19801 appos A20myel-WT,type
R14877 T19804 T19805 punct ),BMDM
R14878 T19805 T19807 nsubjpass BMDM,transfected
R14879 T19806 T19807 auxpass were,transfected
R14880 T19807 T19807 ROOT transfected,transfected
R14881 T19808 T19807 prep with,transfected
R14882 T19809 T19810 compound LMW,poly
R14883 T19810 T19808 pobj poly,with
R14884 T19811 T19814 punct (,C
R14885 T19812 T19814 nsubj I,C
R14886 T19813 T19814 punct :,C
R14887 T19814 T19807 parataxis C,transfected
R14888 T19815 T19814 punct ),C
R14889 T19816 T19807 cc and,transfected
R14890 T19817 T19807 conj analyzed,transfected
R14891 T19818 T19817 prep at,analyzed
R14892 T19819 T19821 amod different,points
R14893 T19820 T19821 compound time,points
R14894 T19821 T19818 pobj points,at
R14895 T19822 T19823 punct (,minutes
R14896 T19823 T19821 appos minutes,points
R14897 T19824 T19817 punct ),analyzed
R14898 T19825 T19817 prep after,analyzed
R14899 T19826 T19827 det the,start
R14900 T19827 T19825 pobj start,after
R14901 T19828 T19827 prep of,start
R14902 T19829 T19828 pobj transfection,of
R14903 T19830 T19827 prep for,start
R14904 T19831 T19832 compound IκBα,phosphorylation
R14905 T19832 T19830 pobj phosphorylation,for
R14906 T19833 T19832 cc and,phosphorylation
R14907 T19834 T19832 conj degradation,phosphorylation
R14908 T19835 T19834 punct ",",degradation
R14909 T19836 T19832 cc and,phosphorylation
R14910 T19837 T19838 compound IRF3,phosphorylation
R14911 T19838 T19838 ROOT phosphorylation,phosphorylation
R14912 T19839 T19838 prep by,phosphorylation
R14913 T19840 T19839 pcomp immunoblotting,by
R14914 T19841 T19840 prep of,immunoblotting
R14915 T19842 T19844 amod total,extracts
R14916 T19843 T19844 compound cell,extracts
R14917 T19844 T19841 pobj extracts,of
R14918 T19845 T19846 punct (,B
R14919 T19846 T19844 appos B,extracts
R14920 T19847 T19844 punct ),extracts
R14921 T19848 T19807 punct .,transfected

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20093 269-284 Phosphorylation denotes phosphorylation
T20092 247-258 Protein_catabolism denotes degradation
T20091 227-242 Phosphorylation denotes phosphorylation
T20090 264-268 Protein denotes IRF3
T20089 222-226 Protein denotes IκBα
R15083 T20089 T20091 themeOf IκBα,phosphorylation
R15084 T20089 T20092 themeOf IκBα,degradation
R15085 T20090 T20093 themeOf IRF3,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T19299 269-284 Phosphorylation denotes phosphorylation
T19298 247-258 Protein_catabolism denotes degradation
T19297 227-242 Phosphorylation denotes phosphorylation
T19296 107-118 Gene_expression denotes transfected
T19285 264-268 Protein denotes IRF3
T19284 222-226 Protein denotes IκBα
R14494 T19284 T19297 themeOf IκBα,phosphorylation
R14495 T19284 T19298 themeOf IκBα,degradation
R14496 T19285 T19299 themeOf IRF3,phosphorylation