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PMC:3291650 / 11082-11198 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T19322 98-103 Protein denotes RIG-I
T19321 67-71 Protein denotes IRF3
T19304 98-103 Protein denotes RIG-I
T19303 67-71 Protein denotes IRF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19473 104-115 NN denotes stimulation
T19472 98-103 NN denotes RIG-I
T19471 95-97 TO denotes to
T19470 86-94 NN denotes response
T19469 83-85 IN denotes in
T19468 72-82 NN denotes activation
T19467 67-71 NN denotes IRF3
T19466 63-66 CC denotes and
T19465 57-62 NN denotes NF-κB
T19464 48-56 VB denotes inhibits
T19463 44-47 NN denotes A20
R14529 T19463 T19464 arg1Of A20,inhibits
R14530 T19465 T19466 arg1Of NF-κB,and
R14531 T19467 T19466 arg2Of IRF3,and
R14532 T19468 T19464 arg2Of activation,inhibits
R14533 T19468 T19465 arg1Of activation,NF-κB
R14534 T19468 T19467 arg1Of activation,IRF3
R14535 T19468 T19469 arg1Of activation,in
R14536 T19469 T19471 arg1Of in,to
R14537 T19470 T19469 arg2Of response,in
R14538 T19473 T19469 arg3Of stimulation,in
R14539 T19473 T19472 arg1Of stimulation,RIG-I

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T19388 98-103 Protein denotes RIG-I
T19387 67-71 Protein denotes IRF3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19977 67-71 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T19975 44-47 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-BP

Id Subject Object Predicate Lexical cue
T19406 48-62 http://purl.obolibrary.org/obo/GO_0007252 denotes inhibits NF-κB
T19405 48-62 http://purl.obolibrary.org/obo/GO_0032088 denotes inhibits NF-κB

sentences

Id Subject Object Predicate Lexical cue
T19347 44-116 Sentence denotes A20 inhibits NF-κB and IRF3 activation in response to RIG-I stimulation.
T68 0-116 Sentence denotes 10.1371/journal.ppat.1002570.g001 Figure 1 A20 inhibits NF-κB and IRF3 activation in response to RIG-I stimulation.

simple1

Id Subject Object Predicate Lexical cue
T19446 98-103 Protein denotes RIG-I
T19445 67-71 Protein denotes IRF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20180 72-82 Positive_regulation denotes activation
T20179 48-56 Negative_regulation denotes inhibits
T20162 98-103 Protein denotes RIG-I
T20161 67-71 Protein denotes IRF3
R15123 T20161 T20180 themeOf IRF3,activation
R15130 T20180 T20179 themeOf activation,inhibits

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20016 48-56 Negative_regulation denotes inhibits
T20015 72-82 Positive_regulation denotes activation
T20014 86-94 Positive_regulation denotes response
T19997 98-103 Protein denotes RIG-I
T19996 67-71 Protein denotes IRF3
R15048 T19996 T20015 themeOf IRF3,activation
R15054 T20015 T20016 themeOf activation,inhibits
R15055 T20015 T20014 themeOf activation,response

DLUT931

Id Subject Object Predicate Lexical cue
T20064 48-56 Negative_regulation denotes inhibits
T20063 86-94 Positive_regulation denotes response
T20062 72-82 Positive_regulation denotes activation
T20045 98-103 Protein denotes RIG-I
T20044 67-71 Protein denotes IRF3
R15060 T20044 T20062 themeOf IRF3,activation
R15061 T20045 T20063 themeOf RIG-I,response
R15069 T20062 T20064 themeOf activation,inhibits
R15070 T20062 T20063 themeOf activation,response
R15071 T20063 T20062 themeOf response,activation
R15072 T20063 T20062 themeOf response,activation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20223 98-115 Positive_regulation denotes RIG-I stimulation
T20220 67-82 Positive_regulation denotes IRF3 activation
T20208 98-103 Protein denotes RIG-I
T20204 67-71 Protein denotes IRF3
T20197 57-62 Protein denotes NF-κB
T20191 44-47 Protein denotes A20
R15132 T20204 T20220 themeOf IRF3,IRF3 activation
R15133 T20208 T20223 themeOf RIG-I,RIG-I stimulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19723 115-116 . denotes .
T19722 104-115 NN denotes stimulation
T19721 98-103 NNP denotes RIG-I
T19720 95-97 TO denotes to
T19719 86-94 NN denotes response
T19718 83-85 IN denotes in
T19717 72-82 NN denotes activation
T19716 67-71 JJ denotes IRF3
T19715 63-66 CC denotes and
T19714 57-62 JJ denotes NF-κB
T19713 48-56 NNS denotes inhibits
T19712 44-47 CD denotes A20
R14785 T19712 T19713 nummod A20,inhibits
R14786 T19713 T19714 nsubj inhibits,NF-κB
R14787 T19714 T19717 amod NF-κB,activation
R14788 T19715 T19714 cc and,NF-κB
R14789 T19716 T19714 conj IRF3,NF-κB
R14790 T19717 T19717 ROOT activation,activation
R14791 T19718 T19717 prep in,activation
R14792 T19719 T19718 pobj response,in
R14793 T19720 T19719 prep to,response
R14794 T19721 T19722 compound RIG-I,stimulation
R14795 T19722 T19720 pobj stimulation,to
R14796 T19723 T19717 punct .,activation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20078 48-56 Negative_regulation denotes inhibits
T20077 48-56 Negative_regulation denotes inhibits
T20076 72-82 Positive_regulation denotes activation
T20075 72-82 Positive_regulation denotes activation
T20074 98-103 Protein denotes RIG-I
T20073 67-71 Protein denotes IRF3
T20072 57-62 Protein denotes NF-κB
T20071 44-47 Protein denotes A20
R15073 T20072 T20075 themeOf NF-κB,activation
R15074 T20073 T20076 themeOf IRF3,activation
R15075 T20075 T20077 themeOf activation,inhibits
R15076 T20076 T20078 themeOf activation,inhibits
R15077 T20077 T20071 Cause inhibits,A20
R15078 T20078 T20071 Cause inhibits,A20

testone

Id Subject Object Predicate Lexical cue
T19279 98-103 Protein denotes RIG-I
T19278 67-71 Protein denotes IRF3