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PMC:3291650 / 10843-10980 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T4665 96-100 Protein denotes IRF7
T4664 82-87 Protein denotes RIG-I
T4663 51-61 Positive_regulation denotes activation
T4662 46-50 Protein denotes IRF3
T4597 96-100 Protein denotes IRF7
T4596 82-87 Protein denotes RIG-I
T4595 46-50 Protein denotes IRF3
R3186 T4662 T4663 themeOf IRF3,activation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5340 135-136 -RRB- denotes )
T5339 130-135 NN denotes graph
T5338 124-129 JJ denotes right
T5337 122-123 -COMMA- denotes ,
T5336 120-122 NN denotes 1A
T5335 113-119 NN denotes figure
T5334 112-113 -LRB- denotes (
T5333 101-111 NN denotes activation
T5332 96-100 NN denotes IRF7
T5331 82-95 JJ denotes RIG-I-induced
T5330 72-81 VB denotes prevented
T5329 67-71 RB denotes also
T5328 63-66 NN denotes A20
T5327 61-62 -COMMA- denotes ,
T5326 51-61 NN denotes activation
T5325 46-50 NN denotes IRF3
T5324 42-45 CC denotes and
T5323 36-41 NN denotes NF-κB
T5322 33-35 IN denotes on
T5321 26-32 NN denotes effect
T5320 15-25 JJ denotes inhibitory
T5319 11-14 PRP-DOLLAR- denotes its
T5318 8-10 TO denotes to
T5317 0-7 JJ denotes Similar
R3571 T5317 T5318 arg1Of Similar,to
R3572 T5321 T5318 arg2Of effect,to
R3573 T5321 T5319 arg1Of effect,its
R3574 T5321 T5320 arg1Of effect,inhibitory
R3575 T5321 T5322 arg1Of effect,on
R3576 T5323 T5324 arg1Of NF-κB,and
R3577 T5325 T5324 arg2Of IRF3,and
R3578 T5326 T5322 arg2Of activation,on
R3579 T5326 T5323 arg1Of activation,NF-κB
R3580 T5326 T5325 arg1Of activation,IRF3
R3581 T5328 T5330 arg1Of A20,prevented
R3582 T5330 T5317 arg1Of prevented,Similar
R3583 T5330 T5327 arg1Of prevented,","
R3584 T5330 T5329 arg1Of prevented,also
R3585 T5333 T5330 arg2Of activation,prevented
R3586 T5333 T5331 arg1Of activation,RIG-I-induced
R3587 T5333 T5332 arg1Of activation,IRF7
R3588 T5333 T5334 arg1Of activation,(
R3589 T5336 T5334 arg2Of 1A,(
R3590 T5336 T5335 arg1Of 1A,figure
R3591 T5336 T5337 arg1Of 1A,","
R3592 T5339 T5337 arg2Of graph,","
R3593 T5339 T5338 arg1Of graph,right
R3594 T5340 T5334 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4917 96-100 Protein denotes IRF7
T4916 82-87 Protein denotes RIG-I
T4915 46-50 Protein denotes IRF3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6681 96-100 http://www.uniprot.org/uniprot/Q92985 denotes IRF7
T6663 46-50 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T6644 63-66 http://www.uniprot.org/uniprot/P21580 denotes A20

sentences

Id Subject Object Predicate Lexical cue
T4732 0-137 Sentence denotes Similar to its inhibitory effect on NF-κB and IRF3 activation, A20 also prevented RIG-I-induced IRF7 activation (figure 1A, right graph).
T66 0-137 Sentence denotes Similar to its inhibitory effect on NF-κB and IRF3 activation, A20 also prevented RIG-I-induced IRF7 activation (figure 1A, right graph).

simple1

Id Subject Object Predicate Lexical cue
T5055 96-100 Protein denotes IRF7
T5054 82-87 Protein denotes RIG-I
T5053 46-50 Protein denotes IRF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7364 72-81 Negative_regulation denotes prevented
T7363 101-111 Positive_regulation denotes activation
T7362 26-32 Regulation denotes effect
T7361 88-95 Positive_regulation denotes induced
T7360 51-61 Positive_regulation denotes activation
T7314 96-100 Protein denotes IRF7
T7313 82-87 Protein denotes RIG-I
T7312 46-50 Protein denotes IRF3
R5258 T7312 T7360 themeOf IRF3,activation
R5260 T7314 T7363 themeOf IRF7,activation
R5300 T7360 T7362 themeOf activation,effect
R5303 T7363 T7364 themeOf activation,prevented
R5304 T7363 T7361 themeOf activation,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6721 96-100 Protein denotes IRF7
T6720 82-87 Protein denotes RIG-I
T6719 46-50 Protein denotes IRF3
T6773 51-61 Positive_regulation denotes activation
T6772 101-111 Positive_regulation denotes activation
T6771 72-81 Negative_regulation denotes prevented
T6770 26-32 Regulation denotes effect
T6769 88-95 Positive_regulation denotes induced
R4918 T6719 T6773 themeOf IRF3,activation
R4919 T6720 T6769 causeOf RIG-I,induced
R4920 T6721 T6772 themeOf IRF7,activation
R4929 T6772 T6771 themeOf activation,prevented
R4935 T6772 T6769 themeOf activation,induced
R4936 T6773 T6770 themeOf activation,effect

DLUT931

Id Subject Object Predicate Lexical cue
T6948 72-81 Negative_regulation denotes prevented
T6947 26-32 Regulation denotes effect
T6946 101-111 Positive_regulation denotes activation
T6945 51-61 Positive_regulation denotes activation
T6895 96-100 Protein denotes IRF7
T6894 82-87 Protein denotes RIG-I
T6893 46-50 Protein denotes IRF3
T6949 88-95 Positive_regulation denotes induced
R5000 T6893 T6945 themeOf IRF3,activation
R5001 T6894 T6949 causeOf RIG-I,induced
R5002 T6895 T6946 themeOf IRF7,activation
R5006 T6946 T6948 themeOf activation,prevented
R5007 T6946 T6949 themeOf activation,induced
R5011 T6949 T6946 themeOf induced,activation
R5100 T6945 T6947 themeOf activation,effect

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7558 46-62 Positive_regulation denotes IRF3 activation,
T7517 82-95 Protein denotes RIG-I-induced
T7506 63-66 Protein denotes A20
T7444 46-50 Protein denotes IRF3
T7435 96-100 Protein denotes IRF7
T7409 33-41 Protein denotes on NF-κB
T7532 82-136 Positive_regulation denotes RIG-I-induced IRF7 activation (figure 1A, right graph)
T7531 63-136 Negative_regulation denotes A20 also prevented RIG-I-induced IRF7 activation (figure 1A, right graph)
R5335 T7506 T7531 causeOf A20,"A20 also prevented RIG-I-induced IRF7 activation (figure 1A, right graph)"
R5351 T7532 T7531 themeOf "RIG-I-induced IRF7 activation (figure 1A, right graph)","A20 also prevented RIG-I-induced IRF7 activation (figure 1A, right graph)"
R5355 T7435 T7532 themeOf IRF7,"RIG-I-induced IRF7 activation (figure 1A, right graph)"
R5363 T7444 T7558 themeOf IRF3,"IRF3 activation,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6113 136-137 . denotes .
T6112 135-136 -RRB- denotes )
T6111 130-135 NN denotes graph
T6110 124-129 JJ denotes right
T6109 122-123 , denotes ,
T6108 120-122 NNP denotes 1A
T6107 113-119 NN denotes figure
T6106 112-113 -LRB- denotes (
T6105 101-111 NN denotes activation
T6104 96-100 NNP denotes IRF7
T6103 82-95 JJ denotes RIG-I-induced
T6102 72-81 VBD denotes prevented
T6101 67-71 RB denotes also
T6100 63-66 NNP denotes A20
T6099 61-62 , denotes ,
T6098 51-61 NN denotes activation
T6097 46-50 NNP denotes IRF3
T6096 42-45 CC denotes and
T6095 36-41 NNP denotes NF-κB
T6094 33-35 IN denotes on
T6093 26-32 NN denotes effect
T6092 15-25 JJ denotes inhibitory
T6091 11-14 PRP$ denotes its
T6090 8-10 TO denotes to
T6089 0-7 JJ denotes Similar
R4415 T6089 T6102 advmod Similar,prevented
R4420 T6090 T6089 prep to,Similar
R4424 T6091 T6093 poss its,effect
R4428 T6092 T6093 amod inhibitory,effect
R4436 T6093 T6090 pobj effect,to
R4440 T6094 T6093 prep on,effect
R4445 T6095 T6094 pobj NF-κB,on
R4449 T6096 T6095 cc and,NF-κB
R4453 T6097 T6095 conj IRF3,NF-κB
R4454 T6098 T6093 conj activation,effect
R4455 T6099 T6102 punct ",",prevented
R4458 T6100 T6102 nsubj A20,prevented
R4462 T6101 T6102 advmod also,prevented
R4466 T6102 T6102 ROOT prevented,prevented
R4470 T6103 T6105 amod RIG-I-induced,activation
R4474 T6104 T6105 compound IRF7,activation
R4478 T6105 T6102 dobj activation,prevented
R4483 T6106 T6108 punct (,1A
R4486 T6107 T6108 compound figure,1A
R4489 T6108 T6105 appos 1A,activation
R4493 T6109 T6111 punct ",",graph
R4497 T6110 T6111 amod right,graph
R4502 T6111 T6105 conj graph,activation
R4504 T6112 T6105 punct ),activation
R4505 T6113 T6102 punct .,prevented

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7049 72-81 Negative_regulation denotes prevented
T7048 26-32 Regulation denotes effect
T7047 26-32 Regulation denotes effect
T7046 101-111 Positive_regulation denotes activation
T7045 51-61 Positive_regulation denotes activation
T7044 51-61 Positive_regulation denotes activation
T7043 96-100 Protein denotes IRF7
T7042 63-66 Protein denotes A20
T7041 46-50 Protein denotes IRF3
T7040 36-41 Protein denotes NF-κB
R5103 T7040 T7044 themeOf NF-κB,activation
R5105 T7041 T7045 themeOf IRF3,activation
R5106 T7043 T7046 themeOf IRF7,activation
R5108 T7044 T7047 themeOf activation,effect
R5109 T7045 T7048 themeOf activation,effect
R5112 T7046 T7049 themeOf activation,prevented
R5114 T7049 T7042 Cause prevented,A20

testone

Id Subject Object Predicate Lexical cue
T4540 101-111 Positive_regulation denotes activation
T4539 88-95 Positive_regulation denotes induced
T4538 72-81 Negative_regulation denotes prevented
T4495 96-100 Protein denotes IRF7
T4494 82-87 Protein denotes RIG-I
T4493 46-50 Protein denotes IRF3
R3128 T4494 T4539 causeOf RIG-I,induced
R3129 T4495 T4540 themeOf IRF7,activation
R3152 T4539 T4538 themeOf induced,prevented
R3153 T4540 T4539 themeOf activation,induced
R3154 T4540 T4538 themeOf activation,prevented