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PMC:3291650 / 0-497 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T13 5-12 Protein denotes Tnfaip3
T17 5-12 Protein denotes Tnfaip3
T18 14-24 Negative_regulation denotes Deficiency
T20 463-468 Protein denotes RIG-I
T19 433-462 Protein denotes pathogen recognition receptor
T15 463-468 Protein denotes RIG-I
T14 433-462 Protein denotes pathogen recognition receptor

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T69 0-3 NN denotes A20
T70 4-5 -LRB- denotes (
T71 5-12 NN denotes Tnfaip3
T72 12-13 -RRB- denotes )
T73 14-24 NN denotes Deficiency
T74 25-27 IN denotes in
T75 28-35 NNP denotes Myeloid
T76 36-41 NNP denotes Cells
T77 42-50 NNP denotes Protects
T78 51-58 IN denotes against
T79 59-68 NNP denotes Influenza
T80 69-70 NNP denotes A
T81 71-76 NNP denotes Virus
T82 77-86 NNP denotes Infection
T133 485-495 NN denotes production
T132 481-484 DT denotes the
T131 473-480 VB denotes induces
T130 469-472 CC denotes and
T129 463-468 NN denotes RIG-I
T128 454-462 NN denotes receptor
T127 442-453 NN denotes recognition
T126 433-441 NN denotes pathogen
T125 419-432 JJ denotes intracellular
T124 415-418 DT denotes the
T123 405-414 VB denotes activates
T122 399-404 WDT denotes which
T121 397-398 -COMMA- denotes ,
T120 392-397 NN denotes cycle
T119 387-391 NN denotes life
T118 375-386 NN denotes replication
T117 371-374 DT denotes the
T116 364-370 IN denotes during
T115 351-363 NN denotes intermediate
T114 348-350 DT denotes an
T113 345-347 IN denotes as
T112 341-344 NN denotes RNA
T111 325-340 JJ denotes double-stranded
T110 316-324 VB denotes produces
T109 314-315 -RRB- denotes )
T108 311-314 NN denotes IAV
T107 310-311 -LRB- denotes (
T106 304-309 NN denotes virus
T105 302-303 NN denotes A
T104 292-301 NN denotes Influenza
T103 281-290 NN denotes molecules
T102 271-280 JJ denotes microbial
T101 262-270 JJ denotes specific
T100 259-261 TO denotes to
T99 248-258 VB denotes responding
T98 245-247 IN denotes by
T97 235-244 NN denotes pathogens
T96 229-234 JJ denotes other
T95 225-228 CC denotes and
T94 217-224 NN denotes viruses
T93 209-216 IN denotes against
T92 201-208 NN denotes defense
T91 198-200 IN denotes of
T90 193-197 NN denotes line
T89 187-192 JJ denotes first
T88 183-186 DT denotes the
T87 174-182 VB denotes provides
T86 165-173 NN denotes response
T85 158-164 JJ denotes immune
T84 151-157 JJ denotes innate
T83 147-150 DT denotes The
R1 T69 T70 arg1Of A20,(
R2 T71 T70 arg2Of Tnfaip3,(
R3 T72 T70 arg3Of ),(
R4 T73 T69 arg1Of Deficiency,A20
R5 T73 T74 arg1Of Deficiency,in
R6 T73 T78 arg1Of Deficiency,against
R7 T77 T74 arg2Of Protects,in
R8 T77 T75 arg1Of Protects,Myeloid
R9 T77 T76 arg1Of Protects,Cells
R10 T82 T78 arg2Of Infection,against
R11 T82 T79 arg1Of Infection,Influenza
R12 T82 T80 arg1Of Infection,A
R13 T82 T81 arg1Of Infection,Virus
R14 T86 T83 arg1Of response,The
R15 T86 T84 arg1Of response,innate
R16 T86 T85 arg1Of response,immune
R17 T86 T87 arg1Of response,provides
R18 T86 T99 arg1Of response,responding
R19 T87 T98 arg1Of provides,by
R20 T90 T87 arg2Of line,provides
R21 T90 T88 arg1Of line,the
R22 T90 T89 arg1Of line,first
R23 T90 T91 arg1Of line,of
R24 T90 T93 arg1Of line,against
R25 T92 T91 arg2Of defense,of
R26 T94 T95 arg1Of viruses,and
R27 T95 T93 arg2Of and,against
R28 T97 T95 arg2Of pathogens,and
R29 T97 T96 arg1Of pathogens,other
R30 T99 T98 arg2Of responding,by
R31 T99 T100 arg1Of responding,to
R32 T103 T100 arg2Of molecules,to
R33 T103 T101 arg1Of molecules,specific
R34 T103 T102 arg1Of molecules,microbial
R35 T106 T104 arg1Of virus,Influenza
R36 T106 T105 arg1Of virus,A
R37 T106 T107 arg1Of virus,(
R38 T106 T110 arg1Of virus,produces
R39 T108 T107 arg2Of IAV,(
R40 T109 T107 arg3Of ),(
R41 T110 T113 arg1Of produces,as
R42 T112 T110 arg2Of RNA,produces
R43 T112 T111 arg1Of RNA,double-stranded
R44 T115 T113 arg2Of intermediate,as
R45 T115 T114 arg1Of intermediate,an
R46 T115 T116 arg1Of intermediate,during
R47 T120 T116 arg2Of cycle,during
R48 T120 T117 arg1Of cycle,the
R49 T120 T118 arg1Of cycle,replication
R50 T120 T119 arg1Of cycle,life
R51 T120 T121 arg1Of cycle,","
R52 T120 T122 arg1Of cycle,which
R53 T120 T123 arg1Of cycle,activates
R54 T120 T131 arg1Of cycle,induces
R55 T123 T130 arg1Of activates,and
R56 T129 T123 arg2Of RIG-I,activates
R57 T129 T124 arg1Of RIG-I,the
R58 T129 T125 arg1Of RIG-I,intracellular
R59 T129 T126 arg1Of RIG-I,pathogen
R60 T129 T127 arg1Of RIG-I,recognition
R61 T129 T128 arg1Of RIG-I,receptor
R62 T131 T130 arg2Of induces,and
R63 T133 T131 arg2Of production,induces
R64 T133 T132 arg1Of production,the

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T40 5-12 Protein denotes Tnfaip3
T41 433-462 Protein denotes pathogen recognition receptor
T42 463-468 Protein denotes RIG-I

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T535 0-3 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-BP

Id Subject Object Predicate Lexical cue
T57 158-173 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T44 151-164 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune
T45 151-173 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T47 151-173 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T49 151-173 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T51 151-173 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T53 151-173 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response
T55 151-173 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response

GO-CC

Id Subject Object Predicate Lexical cue
T61 419-432 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T24 0-86 Sentence denotes A20 (Tnfaip3) Deficiency in Myeloid Cells Protects against Influenza A Virus Infection
T25 147-291 Sentence denotes The innate immune response provides the first line of defense against viruses and other pathogens by responding to specific microbial molecules.
T1 0-86 Sentence denotes A20 (Tnfaip3) Deficiency in Myeloid Cells Protects against Influenza A Virus Infection
T2 87-136 Sentence denotes Loss of A20 in Myeloid Cells Protects against IAV
T3 138-146 Sentence denotes Abstract
T4 147-291 Sentence denotes The innate immune response provides the first line of defense against viruses and other pathogens by responding to specific microbial molecules.

simple1

Id Subject Object Predicate Lexical cue
T65 5-12 Protein denotes Tnfaip3
T67 463-468 Protein denotes RIG-I
T66 433-462 Protein denotes pathogen recognition receptor

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T607 5-12 Protein denotes Tnfaip3
T611 14-24 Negative_regulation denotes Deficiency
T608 433-462 Protein denotes pathogen recognition receptor
T609 463-468 Protein denotes RIG-I
T612 405-414 Positive_regulation denotes activates
R505 T607 T611 themeOf Tnfaip3,Deficiency
R506 T608 T612 themeOf pathogen recognition receptor,activates
R507 T609 T612 themeOf RIG-I,activates

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T542 5-12 Protein denotes Tnfaip3
T543 433-462 Protein denotes pathogen recognition receptor
T544 463-468 Protein denotes RIG-I
T547 405-414 Positive_regulation denotes activates
T546 14-24 Negative_regulation denotes Deficiency
R497 T542 T546 themeOf Tnfaip3,Deficiency
R498 T544 T547 themeOf RIG-I,activates

DLUT931

Id Subject Object Predicate Lexical cue
T549 5-12 Protein denotes Tnfaip3
T553 14-24 Negative_regulation denotes Deficiency
T550 433-462 Protein denotes pathogen recognition receptor
T551 463-468 Protein denotes RIG-I
T554 405-414 Positive_regulation denotes activates
R500 T549 T553 themeOf Tnfaip3,Deficiency
R501 T550 T554 themeOf pathogen recognition receptor,activates
R502 T551 T554 themeOf RIG-I,activates

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T644 5-12 Protein denotes Tnfaip3
T645 28-41 Entity denotes Myeloid Cells
T649 415-469 Localization denotes the intracellular pathogen recognition receptor RIG-I
T642 415-468 Protein denotes the intracellular pathogen recognition receptor RIG-I
T640 348-363 Entity denotes an intermediate
T631 325-344 Protein denotes double-stranded RNA
T621 0-13 Protein denotes A20 (Tnfaip3)
T629 259-290 Entity denotes to specific microbial molecules
T634 415-468 Protein denotes the intracellular pathogen recognition receptor RIG-I
T637 419-432 Entity denotes intracellular
R515 T634 T649 themeOf the intracellular pathogen recognition receptor RIG-I,the intracellular pathogen recognition receptor RIG-I
R516 T637 T649 locationOf intracellular,the intracellular pathogen recognition receptor RIG-I

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T312 71-76 NNP denotes Virus
T313 77-86 NNP denotes Infection
T365 485-495 NN denotes production
T364 481-484 DT denotes the
T363 473-480 VBZ denotes induces
T362 469-472 CC denotes and
T361 463-468 NNP denotes RIG-I
T360 454-462 NN denotes receptor
T359 442-453 NN denotes recognition
T358 433-441 NN denotes pathogen
T357 419-432 JJ denotes intracellular
T356 415-418 DT denotes the
T355 405-414 VBZ denotes activates
T354 399-404 WDT denotes which
T353 397-398 , denotes ,
T352 392-397 NN denotes cycle
T351 387-391 NN denotes life
T350 375-386 NN denotes replication
T349 371-374 DT denotes the
T348 364-370 IN denotes during
T347 351-363 JJ denotes intermediate
T346 348-350 DT denotes an
T345 345-347 IN denotes as
T344 341-344 NNP denotes RNA
T343 325-340 JJ denotes double-stranded
T342 316-324 VBZ denotes produces
T341 314-315 -RRB- denotes )
T340 311-314 NNP denotes IAV
T339 310-311 -LRB- denotes (
T338 304-309 NN denotes virus
T337 302-303 NNP denotes A
T336 292-301 NNP denotes Influenza
T335 290-291 . denotes .
T334 281-290 NNS denotes molecules
T333 271-280 JJ denotes microbial
T332 262-270 JJ denotes specific
T331 259-261 TO denotes to
T330 248-258 VBG denotes responding
T329 245-247 IN denotes by
T328 235-244 NNS denotes pathogens
T327 229-234 JJ denotes other
T326 225-228 CC denotes and
T325 217-224 NNS denotes viruses
T324 209-216 IN denotes against
T323 201-208 NN denotes defense
T322 198-200 IN denotes of
T321 193-197 NN denotes line
T320 187-192 JJ denotes first
T319 183-186 DT denotes the
T318 174-182 VBZ denotes provides
T317 165-173 NN denotes response
T316 158-164 JJ denotes immune
T315 151-157 NN denotes innate
T314 147-150 NNP denotes The
T300 0-3 CD denotes A20
T301 4-5 -LRB- denotes (
T302 5-12 NN denotes Tnfaip3
T303 12-13 -RRB- denotes )
T304 14-24 NN denotes Deficiency
T305 25-27 IN denotes in
T306 28-35 NNP denotes Myeloid
T307 36-41 NNP denotes Cells
T308 42-50 VBZ denotes Protects
T309 51-58 IN denotes against
T310 59-68 NNP denotes Influenza
T311 69-70 NNP denotes A
R232 T312 T313 compound Virus,Infection
R233 T313 T311 meta Infection,A
R234 T314 T317 det The,response
R235 T315 T317 amod innate,response
R236 T316 T317 amod immune,response
R237 T317 T318 nsubj response,provides
R238 T318 T308 conj provides,Protects
R239 T319 T321 det the,line
R240 T320 T321 amod first,line
R241 T321 T318 dobj line,provides
R242 T322 T321 prep of,line
R243 T323 T322 pobj defense,of
R244 T324 T321 prep against,line
R245 T325 T324 pobj viruses,against
R246 T326 T325 cc and,viruses
R247 T327 T328 amod other,pathogens
R248 T328 T325 conj pathogens,viruses
R249 T329 T318 prep by,provides
R250 T330 T329 pcomp responding,by
R251 T331 T330 prep to,responding
R252 T332 T334 amod specific,molecules
R253 T333 T334 amod microbial,molecules
R254 T334 T331 pobj molecules,to
R255 T335 T318 punct .,provides
R256 T336 T342 nsubj Influenza,produces
R257 T337 T338 det A,virus
R258 T338 T336 appos virus,Influenza
R259 T339 T340 punct (,IAV
R260 T340 T338 appos IAV,virus
R261 T341 T338 punct ),virus
R262 T342 T342 ROOT produces,produces
R263 T343 T344 amod double-stranded,RNA
R264 T344 T342 dobj RNA,produces
R265 T345 T342 prep as,produces
R266 T346 T347 det an,intermediate
R267 T347 T345 pobj intermediate,as
R268 T348 T342 prep during,produces
R269 T349 T352 det the,cycle
R270 T350 T352 compound replication,cycle
R271 T351 T352 compound life,cycle
R272 T352 T348 pobj cycle,during
R273 T353 T352 punct ",",cycle
R274 T354 T355 nsubj which,activates
R275 T355 T352 relcl activates,cycle
R276 T356 T359 det the,recognition
R277 T357 T359 amod intracellular,recognition
R278 T358 T359 compound pathogen,recognition
R279 T359 T355 dobj recognition,activates
R280 T360 T361 compound receptor,RIG-I
R281 T361 T359 appos RIG-I,recognition
R282 T362 T355 cc and,activates
R283 T363 T355 conj induces,activates
R284 T364 T365 det the,production
R285 T365 T363 dobj production,induces
R485 T300 T302 nummod A20,Tnfaip3
R486 T301 T302 punct (,Tnfaip3
R487 T302 T304 nmod Tnfaip3,Deficiency
R488 T303 T302 punct ),Tnfaip3
R489 T304 T308 nsubj Deficiency,Protects
R490 T305 T304 prep in,Deficiency
R491 T306 T307 compound Myeloid,Cells
R492 T307 T305 pobj Cells,in
R493 T308 T308 ROOT Protects,Protects
R494 T309 T308 prep against,Protects
R495 T310 T311 compound Influenza,A
R496 T311 T318 dative A,provides

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T561 0-3 Protein denotes A20
T562 5-12 Protein denotes Tnfaip3
T563 14-24 Negative_regulation denotes Deficiency
T564 14-24 Negative_regulation denotes Deficiency
T568 473-480 Positive_regulation denotes induces
T567 485-495 Gene_expression denotes production
T565 463-468 Protein denotes RIG-I
R456 T562 T564 themeOf Tnfaip3,Deficiency
R458 T567 T568 themeOf production,induces
R455 T561 T563 themeOf A20,Deficiency

testone

Id Subject Object Predicate Lexical cue
T5 5-12 Protein denotes Tnfaip3
T9 14-24 Negative_regulation denotes Deficiency
T7 463-468 Protein denotes RIG-I
T6 433-462 Protein denotes pathogen recognition receptor