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PMC:329117 / 44575-45058 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T12055 0-2 TO denotes To
T12056 3-12 VB denotes determine
T12057 70-78 VBD denotes examined
T12058 13-16 DT denotes the
T12059 17-23 NN denotes number
T12060 24-26 IN denotes of
T12061 27-42 JJ denotes transcriptional
T12062 43-51 NNS denotes isoforms
T12063 52-55 IN denotes for
T12064 56-60 DT denotes each
T12065 61-65 NN denotes gene
T12066 65-67 , denotes ,
T12067 67-69 PRP denotes we
T12068 79-82 DT denotes the
T12069 88-94 NN denotes output
T12070 83-87 NN denotes sim4
T12071 95-98 IN denotes for
T12072 99-104 DT denotes every
T12073 114-118 NN denotes cDNA
T12074 105-113 VBG denotes matching
T12075 119-121 IN denotes in
T12076 122-132 JJ denotes decreasing
T12077 133-138 NN denotes order
T12078 139-141 IN denotes of
T12079 142-148 NN denotes number
T12080 149-151 IN denotes of
T12081 152-157 NNS denotes exons
T12082 157-158 . denotes .
T12083 158-324 sentence denotes The first cDNA was counted as one splice form, and for each subsequent cDNA, we determined whether exon structure was mutually exclusive to isoforms already counted.
T12084 159-162 DT denotes The
T12085 169-173 NN denotes cDNA
T12086 163-168 JJ denotes first
T12087 178-185 VBN denotes counted
T12088 174-177 VBD denotes was
T12089 186-188 IN denotes as
T12090 189-192 CD denotes one
T12091 200-204 NN denotes form
T12092 193-199 NN denotes splice
T12093 204-206 , denotes ,
T12094 206-209 CC denotes and
T12095 210-213 IN denotes for
T12096 239-249 VBD denotes determined
T12097 214-218 DT denotes each
T12098 230-234 NN denotes cDNA
T12099 219-229 JJ denotes subsequent
T12100 234-236 , denotes ,
T12101 236-238 PRP denotes we
T12102 250-257 IN denotes whether
T12103 273-276 VBD denotes was
T12104 258-262 NN denotes exon
T12105 263-272 NN denotes structure
T12106 277-285 RB denotes mutually
T12107 286-295 JJ denotes exclusive
T12108 296-298 IN denotes to
T12109 299-307 NNS denotes isoforms
T12110 308-315 RB denotes already
T12111 316-323 VBN denotes counted
T12112 323-324 . denotes .
T12113 324-483 sentence denotes We were conservative in our definition of mutually exclusive, and thus our count represents the minimum number of isoforms represented in the cDNA collection.
T12114 325-327 PRP denotes We
T12115 328-332 VBD denotes were
T12116 333-345 JJ denotes conservative
T12117 346-348 IN denotes in
T12118 349-352 PRP$ denotes our
T12119 353-363 NN denotes definition
T12120 364-366 IN denotes of
T12121 367-375 RB denotes mutually
T12122 376-385 JJ denotes exclusive
T12123 385-387 , denotes ,
T12124 387-390 CC denotes and
T12125 391-395 RB denotes thus
T12126 406-416 VBZ denotes represents
T12127 396-399 PRP$ denotes our
T12128 400-405 NN denotes count
T12129 417-420 DT denotes the
T12130 429-435 NN denotes number
T12131 421-428 JJ denotes minimum
T12132 436-438 IN denotes of
T12133 439-447 NNS denotes isoforms
T12134 448-459 VBN denotes represented
T12135 460-462 IN denotes in
T12136 463-466 DT denotes the
T12137 472-482 NN denotes collection
T12138 467-471 NN denotes cDNA
T12139 482-483 . denotes .
R7670 T12055 T12056 aux To,determine
R7671 T12056 T12057 advcl determine,examined
R7672 T12058 T12059 det the,number
R7673 T12059 T12056 dobj number,determine
R7674 T12060 T12059 prep of,number
R7675 T12061 T12062 amod transcriptional,isoforms
R7676 T12062 T12060 pobj isoforms,of
R7677 T12063 T12056 prep for,determine
R7678 T12064 T12065 det each,gene
R7679 T12065 T12063 pobj gene,for
R7680 T12066 T12057 punct ", ",examined
R7681 T12067 T12057 nsubj we,examined
R7682 T12068 T12069 det the,output
R7683 T12069 T12057 dobj output,examined
R7684 T12070 T12069 compound sim4,output
R7685 T12071 T12057 prep for,examined
R7686 T12072 T12073 det every,cDNA
R7687 T12073 T12071 pobj cDNA,for
R7688 T12074 T12073 amod matching,cDNA
R7689 T12075 T12057 prep in,examined
R7690 T12076 T12077 amod decreasing,order
R7691 T12077 T12075 pobj order,in
R7692 T12078 T12077 prep of,order
R7693 T12079 T12078 pobj number,of
R7694 T12080 T12079 prep of,number
R7695 T12081 T12080 pobj exons,of
R7696 T12082 T12057 punct .,examined
R7697 T12084 T12085 det The,cDNA
R7698 T12085 T12087 nsubjpass cDNA,counted
R7699 T12086 T12085 amod first,cDNA
R7700 T12088 T12087 auxpass was,counted
R7701 T12089 T12087 prep as,counted
R7702 T12090 T12091 nummod one,form
R7703 T12091 T12089 pobj form,as
R7704 T12092 T12091 compound splice,form
R7705 T12093 T12087 punct ", ",counted
R7706 T12094 T12087 cc and,counted
R7707 T12095 T12096 prep for,determined
R7708 T12096 T12087 conj determined,counted
R7709 T12097 T12098 det each,cDNA
R7710 T12098 T12095 pobj cDNA,for
R7711 T12099 T12098 amod subsequent,cDNA
R7712 T12100 T12096 punct ", ",determined
R7713 T12101 T12096 nsubj we,determined
R7714 T12102 T12103 mark whether,was
R7715 T12103 T12096 ccomp was,determined
R7716 T12104 T12105 compound exon,structure
R7717 T12105 T12103 nsubj structure,was
R7718 T12106 T12107 advmod mutually,exclusive
R7719 T12107 T12103 acomp exclusive,was
R7720 T12108 T12107 prep to,exclusive
R7721 T12109 T12108 pobj isoforms,to
R7722 T12110 T12111 advmod already,counted
R7723 T12111 T12109 acl counted,isoforms
R7724 T12112 T12096 punct .,determined
R7725 T12114 T12115 nsubj We,were
R7726 T12116 T12115 acomp conservative,were
R7727 T12117 T12115 prep in,were
R7728 T12118 T12119 poss our,definition
R7729 T12119 T12117 pobj definition,in
R7730 T12120 T12119 prep of,definition
R7731 T12121 T12122 advmod mutually,exclusive
R7732 T12122 T12120 pobj exclusive,of
R7733 T12123 T12115 punct ", ",were
R7734 T12124 T12115 cc and,were
R7735 T12125 T12126 advmod thus,represents
R7736 T12126 T12115 conj represents,were
R7737 T12127 T12128 poss our,count
R7738 T12128 T12126 nsubj count,represents
R7739 T12129 T12130 det the,number
R7740 T12130 T12126 dobj number,represents
R7741 T12131 T12130 amod minimum,number
R7742 T12132 T12130 prep of,number
R7743 T12133 T12132 pobj isoforms,of
R7744 T12134 T12133 acl represented,isoforms
R7745 T12135 T12134 prep in,represented
R7746 T12136 T12137 det the,collection
R7747 T12137 T12135 pobj collection,in
R7748 T12138 T12137 compound cDNA,collection
R7749 T12139 T12126 punct .,represents

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T11263 27-42 GO_EXT:transcription denotes transcriptional
T11264 43-51 SO_EXT:0001060 denotes isoforms
T11265 61-65 SO_EXT:0000704 denotes gene
T11266 114-118 SO_EXT:cDNA denotes cDNA
T11267 152-157 SO_EXT:0000147 denotes exons
T11268 169-173 SO_EXT:cDNA denotes cDNA
T11269 193-199 GO:0008380 denotes splice
T11270 193-204 SO_EXT:alternative_splice_variant denotes splice form
T11271 230-234 SO_EXT:cDNA denotes cDNA
T11272 258-262 SO_EXT:0000147 denotes exon
T11273 299-307 SO_EXT:0001060 denotes isoforms
T11274 439-447 SO_EXT:0001060 denotes isoforms
T11275 467-471 SO_EXT:cDNA denotes cDNA

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T11144 43-51 SO:0001060 denotes isoforms
T11145 61-65 SO:0000704 denotes gene
T11146 152-157 SO:0000147 denotes exons
T11147 193-199 GO:0008380 denotes splice
T11148 258-262 SO:0000147 denotes exon
T11149 299-307 SO:0001060 denotes isoforms
T11150 439-447 SO:0001060 denotes isoforms