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PMC:329117 / 38693-40345 JSONTXT

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Id Subject Object Predicate Lexical cue
T10707 242-249 NNS denotes embryos
T10708 230-235 NN denotes E16.5
T10663 0-2 DT denotes An
T10664 20-27 NN denotes library
T10665 3-8 JJ denotes adult
T10666 9-14 NN denotes mouse
T10667 15-19 NN denotes cDNA
T10668 86-94 VBN denotes provided
T10669 28-32 VBN denotes made
T10670 33-37 IN denotes from
T10671 38-41 DT denotes the
T10672 52-62 NN denotes epithelium
T10673 42-51 JJ denotes olfactory
T10674 63-65 IN denotes of
T10675 66-67 DT denotes a
T10676 75-81 NN denotes animal
T10677 68-74 JJ denotes single
T10678 82-85 VBD denotes was
T10679 95-97 IN denotes by
T10680 98-104 NNP denotes Leslie
T10681 105-113 NNP denotes Vosshall
T10682 114-115 -LRB- denotes (
T10683 127-137 NNP denotes University
T10684 115-126 NNP denotes Rockefeller
T10685 137-139 , denotes ,
T10686 139-142 NNP denotes New
T10687 143-147 NNP denotes York
T10688 147-149 , denotes ,
T10689 149-151 NNP denotes NY
T10690 151-153 , denotes ,
T10691 153-156 NNP denotes USA
T10692 156-157 -RRB- denotes )
T10693 157-159 , denotes ,
T10694 159-162 CC denotes and
T10695 163-165 DT denotes an
T10696 176-183 NN denotes library
T10697 166-175 JJ denotes embryonic
T10698 255-263 VBN denotes provided
T10699 184-185 -LRB- denotes (
T10700 185-189 VBN denotes made
T10701 190-194 IN denotes from
T10702 195-198 DT denotes the
T10703 209-218 NNS denotes epithelia
T10704 199-208 JJ denotes olfactory
T10705 219-221 IN denotes of
T10706 222-229 JJ denotes several
T10709 236-241 NN denotes E18.5
T10710 235-236 HYPH denotes -
T10711 249-250 -RRB- denotes )
T10712 251-254 VBD denotes was
T10713 264-266 IN denotes by
T10714 267-272 NNP denotes Tyler
T10715 273-281 NNP denotes Cutforth
T10716 282-283 -LRB- denotes (
T10717 292-302 NNP denotes University
T10718 283-291 NNP denotes Columbia
T10719 302-304 , denotes ,
T10720 304-307 NNP denotes New
T10721 308-312 NNP denotes York
T10722 312-314 , denotes ,
T10723 314-316 NNP denotes NY
T10724 316-318 , denotes ,
T10725 318-321 NNP denotes USA
T10726 321-322 -RRB- denotes )
T10727 322-323 . denotes .
T10728 323-446 sentence denotes Both libraries were oligo-dT primed and directionally cloned into the lambdaZAP-XR vector (Stratagene, La Jolla, CA, USA).
T10729 324-328 DT denotes Both
T10730 329-338 NNS denotes libraries
T10731 353-359 VBN denotes primed
T10732 339-343 VBD denotes were
T10733 344-349 NN denotes oligo
T10734 349-350 HYPH denotes -
T10735 350-352 NN denotes dT
T10736 360-363 CC denotes and
T10737 364-377 RB denotes directionally
T10738 378-384 VBN denotes cloned
T10739 385-389 IN denotes into
T10740 390-393 DT denotes the
T10741 407-413 NN denotes vector
T10742 394-403 NN denotes lambdaZAP
T10743 404-406 NN denotes XR
T10744 403-404 HYPH denotes -
T10745 414-415 -LRB- denotes (
T10746 415-425 NNP denotes Stratagene
T10747 425-427 , denotes ,
T10748 427-429 NNP denotes La
T10749 430-435 NNP denotes Jolla
T10750 435-437 , denotes ,
T10751 437-439 NNP denotes CA
T10752 439-441 , denotes ,
T10753 441-444 NNP denotes USA
T10754 444-445 -RRB- denotes )
T10755 445-446 . denotes .
T10756 446-568 sentence denotes The adult library has a complexity of 6.5 × 106 primary clones, and the embryonic library has a complexity of 1.65 × 106.
T10757 447-450 DT denotes The
T10758 457-464 NN denotes library
T10759 451-456 JJ denotes adult
T10760 465-468 VBZ denotes has
T10761 469-470 DT denotes a
T10762 471-481 NN denotes complexity
T10763 482-484 IN denotes of
T10764 485-488 CD denotes 6.5
T10765 491-494 CD denotes 106
T10766 489-490 SYM denotes ×
T10767 503-509 NNS denotes clones
T10768 495-502 JJ denotes primary
T10769 509-511 , denotes ,
T10770 511-514 CC denotes and
T10771 515-518 DT denotes the
T10772 529-536 NN denotes library
T10773 519-528 JJ denotes embryonic
T10774 537-540 VBZ denotes has
T10775 541-542 DT denotes a
T10776 543-553 NN denotes complexity
T10777 554-556 IN denotes of
T10778 557-561 CD denotes 1.65
T10779 564-567 CD denotes 106
T10780 562-563 SYM denotes ×
T10781 567-568 . denotes .
T10782 568-666 sentence denotes Libraries were amplified to give titers of 5 × 109 pfu/ml (adult) or 2 × 1010 pfu/ml (embryonic).
T10783 569-578 NNS denotes Libraries
T10784 584-593 VBN denotes amplified
T10785 579-583 VBD denotes were
T10786 594-596 TO denotes to
T10787 597-601 VB denotes give
T10788 602-608 NNS denotes titers
T10789 609-611 IN denotes of
T10790 612-613 CD denotes 5
T10791 616-619 CD denotes 109
T10792 614-615 SYM denotes ×
T10793 620-623 NNS denotes pfu
T10794 623-624 SYM denotes /
T10795 624-626 NN denotes ml
T10796 627-628 -LRB- denotes (
T10797 628-633 JJ denotes adult
T10798 633-634 -RRB- denotes )
T10799 635-637 CC denotes or
T10800 638-639 CD denotes 2
T10801 642-646 CD denotes 1010
T10802 640-641 SYM denotes ×
T10803 647-650 NNS denotes pfu
T10804 650-651 SYM denotes /
T10805 651-653 NN denotes ml
T10806 654-655 -LRB- denotes (
T10807 655-664 JJ denotes embryonic
T10808 664-665 -RRB- denotes )
T10809 665-666 . denotes .
T10810 666-856 sentence denotes Hybridization probes were made by degenerate PCR of mouse genomic DNA, in a fashion similar to those described previously [1], with primer pairs and annealing temperatures given in Table 2.
T10811 667-680 NN denotes Hybridization
T10812 681-687 NNS denotes probes
T10813 693-697 VBN denotes made
T10814 688-692 VBD denotes were
T10815 698-700 IN denotes by
T10816 701-711 JJ denotes degenerate
T10817 712-715 NN denotes PCR
T10818 716-718 IN denotes of
T10819 719-724 NN denotes mouse
T10820 733-736 NN denotes DNA
T10821 725-732 JJ denotes genomic
T10822 736-738 , denotes ,
T10823 738-740 IN denotes in
T10824 741-742 DT denotes a
T10825 743-750 NN denotes fashion
T10826 751-758 JJ denotes similar
T10827 759-761 IN denotes to
T10828 762-767 DT denotes those
T10829 768-777 VBN denotes described
T10830 778-788 RB denotes previously
T10831 789-790 -LRB- denotes [
T10832 790-791 CD denotes 1
T10833 791-792 -RRB- denotes ]
T10834 792-794 , denotes ,
T10835 794-798 IN denotes with
T10836 839-844 VBN denotes given
T10837 799-805 NN denotes primer
T10838 806-811 NNS denotes pairs
T10839 812-815 CC denotes and
T10840 816-825 VBG denotes annealing
T10841 826-838 NNS denotes temperatures
T10842 845-847 IN denotes in
T10843 848-853 NN denotes Table
T10844 854-855 CD denotes 2
T10845 855-856 . denotes .
T10846 856-919 sentence denotes Low-stringency hybridization conditions were as described [1].
T10847 857-860 JJ denotes Low
T10848 861-871 NN denotes stringency
T10849 860-861 HYPH denotes -
T10850 886-896 NNS denotes conditions
T10851 872-885 NN denotes hybridization
T10852 897-901 VBD denotes were
T10853 902-904 IN denotes as
T10854 905-914 VBN denotes described
T10855 915-916 -LRB- denotes [
T10856 916-917 CD denotes 1
T10857 917-918 -RRB- denotes ]
T10858 918-919 . denotes .
T10859 919-1039 sentence denotes Clonally-pure plaques were obtained through secondary screens using the same probe as the corresponding primary screen.
T10860 920-928 RB denotes Clonally
T10861 929-933 JJ denotes pure
T10862 928-929 HYPH denotes -
T10863 934-941 NNS denotes plaques
T10864 947-955 VBN denotes obtained
T10865 942-946 VBD denotes were
T10866 956-963 IN denotes through
T10867 964-973 JJ denotes secondary
T10868 974-981 NNS denotes screens
T10869 982-987 VBG denotes using
T10870 988-991 DT denotes the
T10871 997-1002 NN denotes probe
T10872 992-996 JJ denotes same
T10873 1003-1005 IN denotes as
T10874 1006-1009 DT denotes the
T10875 1032-1038 NN denotes screen
T10876 1010-1023 VBG denotes corresponding
T10877 1024-1031 JJ denotes primary
T10878 1038-1039 . denotes .
T10879 1039-1119 sentence denotes PCR with vector primers (M13F/R) was performed to prepare sequencing templates.
T10880 1040-1043 NN denotes PCR
T10881 1077-1086 VBN denotes performed
T10882 1044-1048 IN denotes with
T10883 1049-1055 NN denotes vector
T10884 1056-1063 NNS denotes primers
T10885 1064-1065 -LRB- denotes (
T10886 1070-1071 NN denotes R
T10887 1065-1069 NN denotes M13F
T10888 1069-1070 HYPH denotes /
T10889 1071-1072 -RRB- denotes )
T10890 1073-1076 VBD denotes was
T10891 1087-1089 TO denotes to
T10892 1090-1097 VB denotes prepare
T10893 1098-1108 NN denotes sequencing
T10894 1109-1118 NNS denotes templates
T10895 1118-1119 . denotes .
T10896 1119-1356 sentence denotes cDNA size estimates were obtained by agarose gel electrophoresis, and inserts were sequenced from the 5' end using the M13R primer and big-dye terminator chemistry according to ABI's protocols (Applied Biosystems, Foster City, CA, USA).
T10897 1120-1124 NN denotes cDNA
T10898 1125-1129 NN denotes size
T10899 1130-1139 NNS denotes estimates
T10900 1145-1153 VBN denotes obtained
T10901 1140-1144 VBD denotes were
T10902 1154-1156 IN denotes by
T10903 1157-1164 NN denotes agarose
T10904 1165-1168 NN denotes gel
T10905 1169-1184 NN denotes electrophoresis
T10906 1184-1186 , denotes ,
T10907 1186-1189 CC denotes and
T10908 1190-1197 NNS denotes inserts
T10909 1203-1212 VBN denotes sequenced
T10910 1198-1202 VBD denotes were
T10911 1213-1217 IN denotes from
T10912 1218-1221 DT denotes the
T10913 1225-1228 NN denotes end
T10914 1222-1223 CD denotes 5
T10915 1223-1224 SYM denotes '
T10916 1229-1234 VBG denotes using
T10917 1235-1238 DT denotes the
T10918 1244-1250 NN denotes primer
T10919 1239-1243 NN denotes M13R
T10920 1251-1254 CC denotes and
T10921 1255-1258 JJ denotes big
T10922 1259-1262 NN denotes dye
T10923 1258-1259 HYPH denotes -
T10924 1274-1283 NN denotes chemistry
T10925 1263-1273 NN denotes terminator
T10926 1284-1293 VBG denotes according
T10927 1294-1296 IN denotes to
T10928 1297-1300 NNP denotes ABI
T10929 1303-1312 NNS denotes protocols
T10930 1300-1302 POS denotes 's
T10931 1313-1314 -LRB- denotes (
T10932 1322-1332 NNP denotes Biosystems
T10933 1314-1321 NNP denotes Applied
T10934 1332-1334 , denotes ,
T10935 1334-1340 NNP denotes Foster
T10936 1341-1345 NNP denotes City
T10937 1345-1347 , denotes ,
T10938 1347-1349 NNP denotes CA
T10939 1349-1351 , denotes ,
T10940 1351-1354 NNP denotes USA
T10941 1354-1355 -RRB- denotes )
T10942 1355-1356 . denotes .
T10943 1356-1518 sentence denotes In order to obtain 3' sequence, selected phage clones were converted to plasmid stocks following a scaled-down version of Stratagene's in vivo excision protocol.
T10944 1357-1359 IN denotes In
T10945 1416-1425 VBN denotes converted
T10946 1360-1365 NN denotes order
T10947 1366-1368 TO denotes to
T10948 1369-1375 VB denotes obtain
T10949 1376-1377 CD denotes 3
T10950 1379-1387 NN denotes sequence
T10951 1377-1378 SYM denotes '
T10952 1387-1389 , denotes ,
T10953 1389-1397 VBN denotes selected
T10954 1404-1410 NNS denotes clones
T10955 1398-1403 NN denotes phage
T10956 1411-1415 VBD denotes were
T10957 1426-1428 IN denotes to
T10958 1429-1436 NN denotes plasmid
T10959 1437-1443 NNS denotes stocks
T10960 1444-1453 VBG denotes following
T10961 1454-1455 DT denotes a
T10962 1468-1475 NN denotes version
T10963 1456-1462 VBN denotes scaled
T10964 1462-1463 HYPH denotes -
T10965 1463-1467 RP denotes down
T10966 1476-1478 IN denotes of
T10967 1479-1489 NNP denotes Stratagene
T10968 1509-1517 NN denotes protocol
T10969 1489-1491 POS denotes 's
T10970 1492-1494 FW denotes in
T10971 1495-1499 FW denotes vivo
T10972 1500-1508 NN denotes excision
T10973 1517-1518 . denotes .
T10974 1518-1652 sentence denotes Plasmid DNA gave better 3'-end sequence than PCR products, which often suffered from polymerase stuttering through the poly(A) tract.
T10975 1519-1526 NN denotes Plasmid
T10976 1527-1530 NN denotes DNA
T10977 1531-1535 VBD denotes gave
T10978 1536-1542 JJR denotes better
T10979 1550-1558 NN denotes sequence
T10980 1543-1544 CD denotes 3
T10981 1546-1549 NN denotes end
T10982 1544-1545 SYM denotes '
T10983 1545-1546 HYPH denotes -
T10984 1559-1563 IN denotes than
T10985 1564-1567 NN denotes PCR
T10986 1568-1576 NNS denotes products
T10987 1576-1578 , denotes ,
T10988 1578-1583 WDT denotes which
T10989 1590-1598 VBD denotes suffered
T10990 1584-1589 RB denotes often
T10991 1599-1603 IN denotes from
T10992 1604-1614 NN denotes polymerase
T10993 1615-1625 VBG denotes stuttering
T10994 1626-1633 IN denotes through
T10995 1634-1637 DT denotes the
T10996 1646-1651 NN denotes tract
T10997 1638-1642 NN denotes poly
T10998 1642-1643 -LRB- denotes (
T10999 1643-1644 NN denotes A
T11000 1644-1645 -RRB- denotes )
T11001 1651-1652 . denotes .
R6566 T10663 T10664 det An,library
R6567 T10664 T10668 nsubjpass library,provided
R6568 T10665 T10666 amod adult,mouse
R6569 T10666 T10667 compound mouse,cDNA
R6570 T10667 T10664 compound cDNA,library
R6571 T10669 T10664 acl made,library
R6572 T10670 T10669 prep from,made
R6573 T10671 T10672 det the,epithelium
R6574 T10672 T10670 pobj epithelium,from
R6575 T10673 T10672 amod olfactory,epithelium
R6576 T10674 T10672 prep of,epithelium
R6577 T10675 T10676 det a,animal
R6578 T10676 T10674 pobj animal,of
R6579 T10677 T10676 amod single,animal
R6580 T10678 T10668 auxpass was,provided
R6581 T10679 T10668 agent by,provided
R6582 T10680 T10681 compound Leslie,Vosshall
R6583 T10681 T10679 pobj Vosshall,by
R6584 T10682 T10683 punct (,University
R6585 T10683 T10681 parataxis University,Vosshall
R6586 T10684 T10683 compound Rockefeller,University
R6587 T10685 T10683 punct ", ",University
R6588 T10686 T10687 compound New,York
R6589 T10687 T10683 npadvmod York,University
R6590 T10688 T10683 punct ", ",University
R6591 T10689 T10683 npadvmod NY,University
R6592 T10690 T10683 punct ", ",University
R6593 T10691 T10683 npadvmod USA,University
R6594 T10692 T10683 punct ),University
R6595 T10693 T10668 punct ", ",provided
R6596 T10694 T10668 cc and,provided
R6597 T10695 T10696 det an,library
R6598 T10696 T10698 nsubjpass library,provided
R6599 T10697 T10696 amod embryonic,library
R6600 T10698 T10668 conj provided,provided
R6601 T10699 T10696 punct (,library
R6602 T10700 T10696 acl made,library
R6603 T10701 T10700 prep from,made
R6604 T10702 T10703 det the,epithelia
R6605 T10703 T10701 pobj epithelia,from
R6606 T10704 T10703 amod olfactory,epithelia
R6607 T10705 T10703 prep of,epithelia
R6608 T10706 T10707 amod several,embryos
R6609 T10707 T10705 pobj embryos,of
R6610 T10708 T10709 compound E16.5,E18.5
R6611 T10709 T10707 compound E18.5,embryos
R6612 T10710 T10709 punct -,E18.5
R6613 T10711 T10698 punct ),provided
R6614 T10712 T10698 auxpass was,provided
R6615 T10713 T10698 agent by,provided
R6616 T10714 T10715 compound Tyler,Cutforth
R6617 T10715 T10713 pobj Cutforth,by
R6618 T10716 T10717 punct (,University
R6619 T10717 T10715 parataxis University,Cutforth
R6620 T10718 T10717 compound Columbia,University
R6621 T10719 T10717 punct ", ",University
R6622 T10720 T10721 compound New,York
R6623 T10721 T10717 npadvmod York,University
R6624 T10722 T10717 punct ", ",University
R6625 T10723 T10717 npadvmod NY,University
R6626 T10724 T10717 punct ", ",University
R6627 T10725 T10717 npadvmod USA,University
R6628 T10726 T10717 punct ),University
R6629 T10727 T10698 punct .,provided
R6630 T10729 T10730 det Both,libraries
R6631 T10730 T10731 nsubjpass libraries,primed
R6632 T10732 T10731 auxpass were,primed
R6633 T10733 T10731 dep oligo,primed
R6634 T10734 T10731 punct -,primed
R6635 T10735 T10731 dep dT,primed
R6636 T10736 T10731 cc and,primed
R6637 T10737 T10738 advmod directionally,cloned
R6638 T10738 T10731 conj cloned,primed
R6639 T10739 T10738 prep into,cloned
R6640 T10740 T10741 det the,vector
R6641 T10741 T10739 pobj vector,into
R6642 T10742 T10743 compound lambdaZAP,XR
R6643 T10743 T10741 compound XR,vector
R6644 T10744 T10743 punct -,XR
R6645 T10745 T10746 punct (,Stratagene
R6646 T10746 T10741 parataxis Stratagene,vector
R6647 T10747 T10746 punct ", ",Stratagene
R6648 T10748 T10749 compound La,Jolla
R6649 T10749 T10746 npadvmod Jolla,Stratagene
R6650 T10750 T10746 punct ", ",Stratagene
R6651 T10751 T10746 npadvmod CA,Stratagene
R6652 T10752 T10746 punct ", ",Stratagene
R6653 T10753 T10746 npadvmod USA,Stratagene
R6654 T10754 T10746 punct ),Stratagene
R6655 T10755 T10731 punct .,primed
R6656 T10757 T10758 det The,library
R6657 T10758 T10760 nsubj library,has
R6658 T10759 T10758 amod adult,library
R6659 T10761 T10762 det a,complexity
R6660 T10762 T10760 dobj complexity,has
R6661 T10763 T10762 prep of,complexity
R6662 T10764 T10765 quantmod 6.5,106
R6663 T10765 T10767 nummod 106,clones
R6664 T10766 T10765 punct ×,106
R6665 T10767 T10763 pobj clones,of
R6666 T10768 T10767 amod primary,clones
R6667 T10769 T10760 punct ", ",has
R6668 T10770 T10760 cc and,has
R6669 T10771 T10772 det the,library
R6670 T10772 T10774 nsubj library,has
R6671 T10773 T10772 amod embryonic,library
R6672 T10774 T10760 conj has,has
R6673 T10775 T10776 det a,complexity
R6674 T10776 T10774 dobj complexity,has
R6675 T10777 T10776 prep of,complexity
R6676 T10778 T10779 quantmod 1.65,106
R6677 T10779 T10777 pobj 106,of
R6678 T10780 T10779 punct ×,106
R6679 T10781 T10774 punct .,has
R6680 T10783 T10784 nsubjpass Libraries,amplified
R6681 T10785 T10784 auxpass were,amplified
R6682 T10786 T10787 aux to,give
R6683 T10787 T10784 advcl give,amplified
R6684 T10788 T10787 dobj titers,give
R6685 T10789 T10788 prep of,titers
R6686 T10790 T10791 quantmod 5,109
R6687 T10791 T10793 nummod 109,pfu
R6688 T10792 T10791 punct ×,109
R6689 T10793 T10789 pobj pfu,of
R6690 T10794 T10795 punct /,ml
R6691 T10795 T10793 prep ml,pfu
R6692 T10796 T10797 punct (,adult
R6693 T10797 T10793 parataxis adult,pfu
R6694 T10798 T10797 punct ),adult
R6695 T10799 T10793 cc or,pfu
R6696 T10800 T10801 quantmod 2,1010
R6697 T10801 T10803 nummod 1010,pfu
R6698 T10802 T10801 punct ×,1010
R6699 T10803 T10793 conj pfu,pfu
R6700 T10804 T10805 punct /,ml
R6701 T10805 T10803 prep ml,pfu
R6702 T10806 T10807 punct (,embryonic
R6703 T10807 T10803 parataxis embryonic,pfu
R6704 T10808 T10807 punct ),embryonic
R6705 T10809 T10784 punct .,amplified
R6706 T10811 T10812 compound Hybridization,probes
R6707 T10812 T10813 nsubjpass probes,made
R6708 T10814 T10813 auxpass were,made
R6709 T10815 T10813 prep by,made
R6710 T10816 T10817 amod degenerate,PCR
R6711 T10817 T10815 pobj PCR,by
R6712 T10818 T10817 prep of,PCR
R6713 T10819 T10820 nmod mouse,DNA
R6714 T10820 T10818 pobj DNA,of
R6715 T10821 T10820 amod genomic,DNA
R6716 T10822 T10813 punct ", ",made
R6717 T10823 T10813 prep in,made
R6718 T10824 T10825 det a,fashion
R6719 T10825 T10823 pobj fashion,in
R6720 T10826 T10825 amod similar,fashion
R6721 T10827 T10825 prep to,fashion
R6722 T10828 T10827 pobj those,to
R6723 T10829 T10828 acl described,those
R6724 T10830 T10829 advmod previously,described
R6725 T10831 T10832 punct [,1
R6726 T10832 T10829 parataxis 1,described
R6727 T10833 T10832 punct ],1
R6728 T10834 T10813 punct ", ",made
R6729 T10835 T10836 mark with,given
R6730 T10836 T10813 advcl given,made
R6731 T10837 T10838 compound primer,pairs
R6732 T10838 T10836 nsubj pairs,given
R6733 T10839 T10838 cc and,pairs
R6734 T10840 T10841 amod annealing,temperatures
R6735 T10841 T10838 conj temperatures,pairs
R6736 T10842 T10836 prep in,given
R6737 T10843 T10842 pobj Table,in
R6738 T10844 T10843 nummod 2,Table
R6739 T10845 T10813 punct .,made
R6740 T10847 T10848 amod Low,stringency
R6741 T10848 T10850 compound stringency,conditions
R6742 T10849 T10848 punct -,stringency
R6743 T10850 T10852 nsubj conditions,were
R6744 T10851 T10850 compound hybridization,conditions
R6745 T10853 T10854 mark as,described
R6746 T10854 T10852 advcl described,were
R6747 T10855 T10856 punct [,1
R6748 T10856 T10854 parataxis 1,described
R6749 T10857 T10856 punct ],1
R6750 T10858 T10852 punct .,were
R6751 T10860 T10861 advmod Clonally,pure
R6752 T10861 T10863 amod pure,plaques
R6753 T10862 T10861 punct -,pure
R6754 T10863 T10864 nsubjpass plaques,obtained
R6755 T10865 T10864 auxpass were,obtained
R6756 T10866 T10864 prep through,obtained
R6757 T10867 T10868 amod secondary,screens
R6758 T10868 T10866 pobj screens,through
R6759 T10869 T10864 advcl using,obtained
R6760 T10870 T10871 det the,probe
R6761 T10871 T10869 dobj probe,using
R6762 T10872 T10871 amod same,probe
R6763 T10873 T10871 prep as,probe
R6764 T10874 T10875 det the,screen
R6765 T10875 T10873 pobj screen,as
R6766 T10876 T10875 amod corresponding,screen
R6767 T10877 T10875 amod primary,screen
R6768 T10878 T10864 punct .,obtained
R6769 T10880 T10881 nsubjpass PCR,performed
R6770 T10882 T10880 prep with,PCR
R6771 T10883 T10884 compound vector,primers
R6772 T10884 T10882 pobj primers,with
R6773 T10885 T10886 punct (,R
R6774 T10886 T10880 parataxis R,PCR
R6775 T10887 T10886 compound M13F,R
R6776 T10888 T10886 punct /,R
R6777 T10889 T10886 punct ),R
R6778 T10890 T10881 auxpass was,performed
R6779 T10891 T10892 aux to,prepare
R6780 T10892 T10881 advcl prepare,performed
R6781 T10893 T10894 compound sequencing,templates
R6782 T10894 T10892 dobj templates,prepare
R6783 T10895 T10881 punct .,performed
R6784 T10897 T10898 compound cDNA,size
R6785 T10898 T10899 compound size,estimates
R6786 T10899 T10900 nsubjpass estimates,obtained
R6787 T10901 T10900 auxpass were,obtained
R6788 T10902 T10900 prep by,obtained
R6789 T10903 T10904 compound agarose,gel
R6790 T10904 T10905 compound gel,electrophoresis
R6791 T10905 T10902 pobj electrophoresis,by
R6792 T10906 T10900 punct ", ",obtained
R6793 T10907 T10900 cc and,obtained
R6794 T10908 T10909 nsubjpass inserts,sequenced
R6795 T10909 T10900 conj sequenced,obtained
R6796 T10910 T10909 auxpass were,sequenced
R6797 T10911 T10909 prep from,sequenced
R6798 T10912 T10913 det the,end
R6799 T10913 T10911 pobj end,from
R6800 T10914 T10913 nummod 5,end
R6801 T10915 T10914 punct ',5
R6802 T10916 T10909 advcl using,sequenced
R6803 T10917 T10918 det the,primer
R6804 T10918 T10916 dobj primer,using
R6805 T10919 T10918 compound M13R,primer
R6806 T10920 T10918 cc and,primer
R6807 T10921 T10922 amod big,dye
R6808 T10922 T10924 compound dye,chemistry
R6809 T10923 T10922 punct -,dye
R6810 T10924 T10918 conj chemistry,primer
R6811 T10925 T10924 compound terminator,chemistry
R6812 T10926 T10916 prep according,using
R6813 T10927 T10926 prep to,according
R6814 T10928 T10929 poss ABI,protocols
R6815 T10929 T10927 pobj protocols,to
R6816 T10930 T10928 case 's,ABI
R6817 T10931 T10932 punct (,Biosystems
R6818 T10932 T10929 parataxis Biosystems,protocols
R6819 T10933 T10932 compound Applied,Biosystems
R6820 T10934 T10932 punct ", ",Biosystems
R6821 T10935 T10936 compound Foster,City
R6822 T10936 T10932 npadvmod City,Biosystems
R6823 T10937 T10932 punct ", ",Biosystems
R6824 T10938 T10932 npadvmod CA,Biosystems
R6825 T10939 T10932 punct ", ",Biosystems
R6826 T10940 T10932 npadvmod USA,Biosystems
R6827 T10941 T10932 punct ),Biosystems
R6828 T10942 T10909 punct .,sequenced
R6829 T10944 T10945 prep In,converted
R6830 T10946 T10944 pobj order,In
R6831 T10947 T10948 aux to,obtain
R6832 T10948 T10946 acl obtain,order
R6833 T10949 T10950 nummod 3,sequence
R6834 T10950 T10948 dobj sequence,obtain
R6835 T10951 T10949 punct ',3
R6836 T10952 T10945 punct ", ",converted
R6837 T10953 T10954 amod selected,clones
R6838 T10954 T10945 nsubjpass clones,converted
R6839 T10955 T10954 compound phage,clones
R6840 T10956 T10945 auxpass were,converted
R6841 T10957 T10945 prep to,converted
R6842 T10958 T10959 compound plasmid,stocks
R6843 T10959 T10957 pobj stocks,to
R6844 T10960 T10945 prep following,converted
R6845 T10961 T10962 det a,version
R6846 T10962 T10960 pobj version,following
R6847 T10963 T10962 amod scaled,version
R6848 T10964 T10963 punct -,scaled
R6849 T10965 T10963 prt down,scaled
R6850 T10966 T10962 prep of,version
R6851 T10967 T10968 poss Stratagene,protocol
R6852 T10968 T10966 pobj protocol,of
R6853 T10969 T10967 case 's,Stratagene
R6854 T10970 T10971 advmod in,vivo
R6855 T10971 T10968 amod vivo,protocol
R6856 T10972 T10968 compound excision,protocol
R6857 T10973 T10945 punct .,converted
R6858 T10975 T10976 compound Plasmid,DNA
R6859 T10976 T10977 nsubj DNA,gave
R6860 T10978 T10979 amod better,sequence
R6861 T10979 T10977 dobj sequence,gave
R6862 T10980 T10981 nummod 3,end
R6863 T10981 T10979 compound end,sequence
R6864 T10982 T10980 punct ',3
R6865 T10983 T10981 punct -,end
R6866 T10984 T10979 prep than,sequence
R6867 T10985 T10986 compound PCR,products
R6868 T10986 T10984 pobj products,than
R6869 T10987 T10986 punct ", ",products
R6870 T10988 T10989 dep which,suffered
R6871 T10989 T10986 relcl suffered,products
R6872 T10990 T10989 advmod often,suffered
R6873 T10991 T10989 prep from,suffered
R6874 T10992 T10991 pobj polymerase,from
R6875 T10993 T10992 amod stuttering,polymerase
R6876 T10994 T10989 prep through,suffered
R6877 T10995 T10996 det the,tract
R6878 T10996 T10994 pobj tract,through
R6879 T10997 T10996 nmod poly,tract
R6880 T10998 T10997 punct (,poly
R6881 T10999 T10997 appos A,poly
R6882 T11000 T10996 punct ),tract
R6883 T11001 T10977 punct .,gave

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10602 3-8 UBERON:0007023 denotes adult
T10603 9-14 NCBITaxon:10088 denotes mouse
T10604 15-19 SO_EXT:cDNA denotes cDNA
T10605 42-51 GO:0007608 denotes olfactory
T10606 42-62 UBERON:0001997 denotes olfactory epithelium
T10607 75-81 NCBITaxon:33208 denotes animal
T10608 166-175 UBERON:0000922 denotes embryonic
T10609 199-208 GO:0007608 denotes olfactory
T10610 199-218 UBERON:0001997 denotes olfactory epithelia
T10611 242-249 UBERON:0000922 denotes embryos
T10612 344-349 CHEBI_SO_EXT:oligonucleotide denotes oligo
T10613 350-352 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T10614 378-384 SO_EXT:sequence_cloning_process denotes cloned
T10615 407-413 SO_EXT:0000440 denotes vector
T10616 451-456 UBERON:0007023 denotes adult
T10617 503-509 SO_EXT:sequence_cloned_entity denotes clones
T10618 519-528 UBERON:0000922 denotes embryonic
T10619 628-633 UBERON:0007023 denotes adult
T10620 655-664 UBERON:0000922 denotes embryonic
T10621 667-680 GO:0097617 denotes Hybridization
T10622 681-687 CHEBI_SO_EXT:molecular_probe denotes probes
T10623 719-724 NCBITaxon:10088 denotes mouse
T10624 725-736 SO_EXT:genomic_DNA denotes genomic DNA
T10625 733-736 CHEBI_SO_EXT:DNA denotes DNA
T10626 799-805 SO_EXT:0000112 denotes primer
T10627 816-825 GO:0097617 denotes annealing
T10628 872-885 GO:0097617 denotes hybridization
T10629 920-928 SO_EXT:sequence_cloned_entity denotes Clonally
T10630 997-1002 CHEBI_SO_EXT:molecular_probe denotes probe
T10631 1049-1055 SO_EXT:0000440 denotes vector
T10632 1056-1063 SO_EXT:0000112 denotes primers
T10633 1120-1124 SO_EXT:cDNA denotes cDNA
T10634 1157-1164 CHEBI:2511 denotes agarose
T10635 1190-1197 SO_EXT:0000667 denotes inserts
T10636 1244-1250 SO_EXT:0000112 denotes primer
T10637 1259-1262 CHEBI_EXT:37958 denotes dye
T10638 1379-1387 SO_EXT:biological_sequence denotes sequence
T10639 1404-1410 SO_EXT:sequence_cloned_entity denotes clones
T10640 1416-1425 SO_EXT:sequence_alteration_process denotes converted
T10641 1429-1436 SO_EXT:0000155 denotes plasmid
T10642 1519-1526 SO_EXT:0000155 denotes Plasmid
T10643 1527-1530 CHEBI_SO_EXT:DNA denotes DNA
T10644 1550-1558 SO_EXT:biological_sequence denotes sequence
T10645 1564-1576 SO_EXT:0000006 denotes PCR products
T10646 1604-1614 GO_EXT:polymerase denotes polymerase
T10647 1638-1651 SO_EXT:0000610 denotes poly(A) tract
T10648 1643-1644 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes A

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10565 3-8 UBERON:0007023 denotes adult
T10566 9-14 NCBITaxon:10088 denotes mouse
T10567 42-51 GO:0007608 denotes olfactory
T10568 42-62 UBERON:0001997 denotes olfactory epithelium
T10569 75-81 NCBITaxon:33208 denotes animal
T10570 166-175 UBERON:0000922 denotes embryonic
T10571 199-208 GO:0007608 denotes olfactory
T10572 199-218 UBERON:0001997 denotes olfactory epithelia
T10573 242-249 UBERON:0000922 denotes embryos
T10574 407-413 SO:0000440 denotes vector
T10575 451-456 UBERON:0007023 denotes adult
T10576 519-528 UBERON:0000922 denotes embryonic
T10577 628-633 UBERON:0007023 denotes adult
T10578 655-664 UBERON:0000922 denotes embryonic
T10579 667-680 GO:0097617 denotes Hybridization
T10580 719-724 NCBITaxon:10088 denotes mouse
T10581 725-732 SO:0001026 denotes genomic
T10582 799-805 SO:0000112 denotes primer
T10583 816-825 GO:0097617 denotes annealing
T10584 872-885 GO:0097617 denotes hybridization
T10585 1049-1055 SO:0000440 denotes vector
T10586 1056-1063 SO:0000112 denotes primers
T10587 1157-1164 CHEBI:2511 denotes agarose
T10588 1190-1197 SO:0000667 denotes inserts
T10589 1244-1250 SO:0000112 denotes primer
T10590 1259-1262 CHEBI:37958 denotes dye
T10591 1429-1436 SO:0000155 denotes plasmid
T10592 1519-1526 SO:0000155 denotes Plasmid
T10593 1564-1576 SO:0000006 denotes PCR products
T10594 1638-1651 SO:0000610 denotes poly(A) tract

2_test

Id Subject Object Predicate Lexical cue
14611657-11875048-44684098 790-791 11875048 denotes 1
14611657-11875048-44684099 916-917 11875048 denotes 1