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PMC:329117 / 27572-28364 JSONTXT

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Id Subject Object Predicate Lexical cue
T7596 0-2 PRP denotes We
T7597 8-12 VBP denotes find
T7598 3-7 RB denotes also
T7599 13-17 IN denotes that
T7600 58-67 VBN denotes expressed
T7601 18-22 DT denotes some
T7602 42-53 NNS denotes pseudogenes
T7603 23-32 JJ denotes olfactory
T7604 33-41 NN denotes receptor
T7605 54-57 VBP denotes are
T7606 67-69 , denotes ,
T7607 69-75 IN denotes albeit
T7608 76-80 IN denotes with
T7609 81-82 DT denotes a
T7610 89-100 NN denotes probability
T7611 83-88 JJR denotes lower
T7612 101-105 IN denotes than
T7613 106-112 JJ denotes intact
T7614 123-132 NNS denotes receptors
T7615 113-122 JJ denotes olfactory
T7616 132-133 . denotes .
T7617 133-383 sentence denotes Considering the 1,392 olfactory receptor gene sequences for which reliable full-length data are available, 15 out of 285 (5%) apparent pseudogenes are represented in our cDNA collection, compared to 393 out of 1,107 (36%) intact olfactory receptors.
T7618 134-145 VBG denotes Considering
T7619 285-296 VBN denotes represented
T7620 146-149 DT denotes the
T7621 180-189 NNS denotes sequences
T7622 150-155 CD denotes 1,392
T7623 156-165 JJ denotes olfactory
T7624 166-174 NN denotes receptor
T7625 175-179 NN denotes gene
T7626 190-193 IN denotes for
T7627 226-229 VBP denotes are
T7628 194-199 WDT denotes which
T7629 200-208 JJ denotes reliable
T7630 221-225 NNS denotes data
T7631 209-213 JJ denotes full
T7632 214-220 NN denotes length
T7633 213-214 HYPH denotes -
T7634 230-239 JJ denotes available
T7635 239-241 , denotes ,
T7636 241-243 CD denotes 15
T7637 251-254 CD denotes 285
T7638 244-247 IN denotes out
T7639 248-250 IN denotes of
T7640 269-280 NNS denotes pseudogenes
T7641 255-256 -LRB- denotes (
T7642 257-258 NN denotes %
T7643 256-257 CD denotes 5
T7644 258-259 -RRB- denotes )
T7645 260-268 JJ denotes apparent
T7646 281-284 VBP denotes are
T7647 297-299 IN denotes in
T7648 300-303 PRP$ denotes our
T7649 309-319 NN denotes collection
T7650 304-308 NN denotes cDNA
T7651 319-321 , denotes ,
T7652 321-329 VBN denotes compared
T7653 330-332 IN denotes to
T7654 333-336 CD denotes 393
T7655 344-349 CD denotes 1,107
T7656 337-340 IN denotes out
T7657 341-343 IN denotes of
T7658 373-382 NNS denotes receptors
T7659 350-351 -LRB- denotes (
T7660 353-354 NN denotes %
T7661 351-353 CD denotes 36
T7662 354-355 -RRB- denotes )
T7663 356-362 JJ denotes intact
T7664 363-372 JJ denotes olfactory
T7665 382-383 . denotes .
T7666 383-488 sentence denotes However, three of these 15 'expressed pseudogenes' are intact genes in the public mouse genome sequence.
T7667 384-391 RB denotes However
T7668 435-438 VBP denotes are
T7669 391-393 , denotes ,
T7670 393-398 CD denotes three
T7671 408-410 CD denotes 15
T7672 399-401 IN denotes of
T7673 402-407 DT denotes these
T7674 422-433 NNS denotes pseudogenes
T7675 411-412 `` denotes '
T7676 412-421 JJ denotes expressed
T7677 433-434 '' denotes '
T7678 439-445 JJ denotes intact
T7679 446-451 NNS denotes genes
T7680 452-454 IN denotes in
T7681 455-458 DT denotes the
T7682 479-487 NN denotes sequence
T7683 459-465 JJ denotes public
T7684 466-471 NN denotes mouse
T7685 472-478 NN denotes genome
T7686 487-488 . denotes .
T7687 488-589 sentence denotes The defects in Celera's version of these genes may be due to sequencing errors or true polymorphism.
T7688 489-492 DT denotes The
T7689 493-500 NNS denotes defects
T7690 540-542 VB denotes be
T7691 501-503 IN denotes in
T7692 504-510 NNP denotes Celera
T7693 513-520 NN denotes version
T7694 510-512 POS denotes 's
T7695 521-523 IN denotes of
T7696 524-529 DT denotes these
T7697 530-535 NNS denotes genes
T7698 536-539 MD denotes may
T7699 543-546 IN denotes due
T7700 547-549 IN denotes to
T7701 550-560 VBG denotes sequencing
T7702 561-567 NNS denotes errors
T7703 568-570 CC denotes or
T7704 571-575 JJ denotes true
T7705 576-588 NN denotes polymorphism
T7706 588-589 . denotes .
T7707 589-706 sentence denotes Publicly available mouse sequence confirms that 11 of the 12 remaining expressed pseudogenes are indeed pseudogenes.
T7708 590-598 RB denotes Publicly
T7709 599-608 JJ denotes available
T7710 615-623 NN denotes sequence
T7711 609-614 NN denotes mouse
T7712 624-632 VBZ denotes confirms
T7713 633-637 IN denotes that
T7714 683-686 VBP denotes are
T7715 638-640 CD denotes 11
T7716 648-650 CD denotes 12
T7717 641-643 IN denotes of
T7718 644-647 DT denotes the
T7719 671-682 NNS denotes pseudogenes
T7720 651-660 VBG denotes remaining
T7721 661-670 JJ denotes expressed
T7722 687-693 RB denotes indeed
T7723 694-705 NNS denotes pseudogenes
T7724 705-706 . denotes .
T7725 706-792 sentence denotes No public sequence matches the 12th 'expressed pseudogene' with 99% identity or more.
T7726 707-709 DT denotes No
T7727 717-725 NN denotes sequence
T7728 710-716 JJ denotes public
T7729 726-733 VBZ denotes matches
T7730 734-737 DT denotes the
T7731 754-764 NN denotes pseudogene
T7732 738-742 JJ denotes 12th
T7733 743-744 `` denotes '
T7734 744-753 JJ denotes expressed
T7735 764-765 '' denotes '
T7736 766-770 IN denotes with
T7737 771-773 CD denotes 99
T7738 773-774 NN denotes %
T7739 775-783 NN denotes identity
T7740 784-786 CC denotes or
T7741 787-791 JJR denotes more
T7742 791-792 . denotes .
R4765 T7596 T7597 nsubj We,find
R4766 T7598 T7597 advmod also,find
R4767 T7599 T7600 mark that,expressed
R4768 T7600 T7597 ccomp expressed,find
R4769 T7601 T7602 det some,pseudogenes
R4770 T7602 T7600 nsubjpass pseudogenes,expressed
R4771 T7603 T7604 amod olfactory,receptor
R4772 T7604 T7602 compound receptor,pseudogenes
R4773 T7605 T7600 auxpass are,expressed
R4774 T7606 T7600 punct ", ",expressed
R4775 T7607 T7600 prep albeit,expressed
R4776 T7608 T7607 prep with,albeit
R4777 T7609 T7610 det a,probability
R4778 T7610 T7608 pobj probability,with
R4779 T7611 T7610 amod lower,probability
R4780 T7612 T7610 prep than,probability
R4781 T7613 T7614 amod intact,receptors
R4782 T7614 T7612 pobj receptors,than
R4783 T7615 T7614 amod olfactory,receptors
R4784 T7616 T7597 punct .,find
R4785 T7618 T7619 advcl Considering,represented
R4786 T7620 T7621 det the,sequences
R4787 T7621 T7618 dobj sequences,Considering
R4788 T7622 T7621 nummod "1,392",sequences
R4789 T7623 T7624 amod olfactory,receptor
R4790 T7624 T7621 compound receptor,sequences
R4791 T7625 T7621 compound gene,sequences
R4792 T7626 T7627 prep for,are
R4793 T7627 T7621 relcl are,sequences
R4794 T7628 T7626 pobj which,for
R4795 T7629 T7630 amod reliable,data
R4796 T7630 T7627 nsubj data,are
R4797 T7631 T7632 amod full,length
R4798 T7632 T7630 amod length,data
R4799 T7633 T7632 punct -,length
R4800 T7634 T7627 acomp available,are
R4801 T7635 T7619 punct ", ",represented
R4802 T7636 T7637 quantmod 15,285
R4803 T7637 T7640 nummod 285,pseudogenes
R4804 T7638 T7637 quantmod out,285
R4805 T7639 T7637 quantmod of,285
R4806 T7640 T7619 nsubjpass pseudogenes,represented
R4807 T7641 T7642 punct (,%
R4808 T7642 T7637 parataxis %,285
R4809 T7643 T7642 nummod 5,%
R4810 T7644 T7642 punct ),%
R4811 T7645 T7640 amod apparent,pseudogenes
R4812 T7646 T7619 auxpass are,represented
R4813 T7647 T7619 prep in,represented
R4814 T7648 T7649 poss our,collection
R4815 T7649 T7647 pobj collection,in
R4816 T7650 T7649 compound cDNA,collection
R4817 T7651 T7619 punct ", ",represented
R4818 T7652 T7619 prep compared,represented
R4819 T7653 T7652 prep to,compared
R4820 T7654 T7655 quantmod 393,"1,107"
R4821 T7655 T7658 nummod "1,107",receptors
R4822 T7656 T7655 quantmod out,"1,107"
R4823 T7657 T7655 quantmod of,"1,107"
R4824 T7658 T7653 pobj receptors,to
R4825 T7659 T7660 punct (,%
R4826 T7660 T7655 parataxis %,"1,107"
R4827 T7661 T7660 nummod 36,%
R4828 T7662 T7660 punct ),%
R4829 T7663 T7658 amod intact,receptors
R4830 T7664 T7658 amod olfactory,receptors
R4831 T7665 T7619 punct .,represented
R4832 T7667 T7668 advmod However,are
R4833 T7669 T7668 punct ", ",are
R4834 T7670 T7671 quantmod three,15
R4835 T7671 T7674 nummod 15,pseudogenes
R4836 T7672 T7671 quantmod of,15
R4837 T7673 T7671 quantmod these,15
R4838 T7674 T7668 nsubj pseudogenes,are
R4839 T7675 T7674 punct ',pseudogenes
R4840 T7676 T7674 amod expressed,pseudogenes
R4841 T7677 T7668 punct ',are
R4842 T7678 T7679 amod intact,genes
R4843 T7679 T7668 attr genes,are
R4844 T7680 T7668 prep in,are
R4845 T7681 T7682 det the,sequence
R4846 T7682 T7680 pobj sequence,in
R4847 T7683 T7682 amod public,sequence
R4848 T7684 T7685 compound mouse,genome
R4849 T7685 T7682 compound genome,sequence
R4850 T7686 T7668 punct .,are
R4851 T7688 T7689 det The,defects
R4852 T7689 T7690 nsubj defects,be
R4853 T7691 T7689 prep in,defects
R4854 T7692 T7693 poss Celera,version
R4855 T7693 T7691 pobj version,in
R4856 T7694 T7692 case 's,Celera
R4857 T7695 T7693 prep of,version
R4858 T7696 T7697 det these,genes
R4859 T7697 T7695 pobj genes,of
R4860 T7698 T7690 aux may,be
R4861 T7699 T7690 prep due,be
R4862 T7700 T7699 pcomp to,due
R4863 T7701 T7702 amod sequencing,errors
R4864 T7702 T7699 pobj errors,due
R4865 T7703 T7702 cc or,errors
R4866 T7704 T7705 amod true,polymorphism
R4867 T7705 T7702 conj polymorphism,errors
R4868 T7706 T7690 punct .,be
R4869 T7708 T7709 advmod Publicly,available
R4870 T7709 T7710 amod available,sequence
R4871 T7710 T7712 nsubj sequence,confirms
R4872 T7711 T7710 compound mouse,sequence
R4873 T7713 T7714 mark that,are
R4874 T7714 T7712 ccomp are,confirms
R4875 T7715 T7716 quantmod 11,12
R4876 T7716 T7719 nummod 12,pseudogenes
R4877 T7717 T7716 quantmod of,12
R4878 T7718 T7716 quantmod the,12
R4879 T7719 T7714 nsubj pseudogenes,are
R4880 T7720 T7719 amod remaining,pseudogenes
R4881 T7721 T7719 amod expressed,pseudogenes
R4882 T7722 T7714 advmod indeed,are
R4883 T7723 T7714 attr pseudogenes,are
R4884 T7724 T7712 punct .,confirms
R4885 T7726 T7727 det No,sequence
R4886 T7727 T7729 nsubj sequence,matches
R4887 T7728 T7727 amod public,sequence
R4888 T7730 T7731 det the,pseudogene
R4889 T7731 T7729 dobj pseudogene,matches
R4890 T7732 T7731 amod 12th,pseudogene
R4891 T7733 T7731 punct ',pseudogene
R4892 T7734 T7731 amod expressed,pseudogene
R4893 T7735 T7729 punct ',matches
R4894 T7736 T7729 prep with,matches
R4895 T7737 T7738 nummod 99,%
R4896 T7738 T7739 compound %,identity
R4897 T7739 T7736 pobj identity,with
R4898 T7740 T7739 cc or,identity
R4899 T7741 T7739 conj more,identity
R4900 T7742 T7729 punct .,matches

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7369 23-32 GO:0007608 denotes olfactory
T7370 23-41 GO_EXT:0004984 denotes olfactory receptor
T7371 42-53 SO_EXT:0000336 denotes pseudogenes
T7372 58-67 GO:0010467 denotes expressed
T7373 113-122 GO:0007608 denotes olfactory
T7374 113-132 GO_EXT:0004984 denotes olfactory receptors
T7375 156-165 GO:0007608 denotes olfactory
T7376 156-174 GO_EXT:0004984 denotes olfactory receptor
T7377 175-179 SO_EXT:0000704 denotes gene
T7378 180-189 SO_EXT:biological_sequence denotes sequences
T7379 269-280 SO_EXT:0000336 denotes pseudogenes
T7380 304-308 SO_EXT:cDNA denotes cDNA
T7381 363-372 GO:0007608 denotes olfactory
T7382 363-382 GO_EXT:0004984 denotes olfactory receptors
T7383 412-421 GO:0010467 denotes expressed
T7384 422-433 SO_EXT:0000336 denotes pseudogenes
T7385 446-451 SO_EXT:0000704 denotes genes
T7386 466-471 NCBITaxon:10088 denotes mouse
T7387 472-478 SO_EXT:0001026 denotes genome
T7388 479-487 SO_EXT:biological_sequence denotes sequence
T7389 530-535 SO_EXT:0000704 denotes genes
T7390 576-588 SO_EXT:polymorphism denotes polymorphism
T7391 609-614 NCBITaxon:10088 denotes mouse
T7392 615-623 SO_EXT:biological_sequence denotes sequence
T7393 661-670 GO:0010467 denotes expressed
T7394 671-682 SO_EXT:0000336 denotes pseudogenes
T7395 694-705 SO_EXT:0000336 denotes pseudogenes
T7396 717-733 SO_EXT:0000343 denotes sequence matches
T7397 744-753 GO:0010467 denotes expressed
T7398 754-764 SO_EXT:0000336 denotes pseudogene

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7307 23-32 GO:0007608 denotes olfactory
T7308 42-53 SO:0000336 denotes pseudogenes
T7309 58-67 GO:0010467 denotes expressed
T7310 113-122 GO:0007608 denotes olfactory
T7311 156-165 GO:0007608 denotes olfactory
T7312 175-179 SO:0000704 denotes gene
T7313 269-280 SO:0000336 denotes pseudogenes
T7314 363-372 GO:0007608 denotes olfactory
T7315 412-421 GO:0010467 denotes expressed
T7316 422-433 SO:0000336 denotes pseudogenes
T7317 446-451 SO:0000704 denotes genes
T7318 466-471 NCBITaxon:10088 denotes mouse
T7319 472-478 SO:0001026 denotes genome
T7320 530-535 SO:0000704 denotes genes
T7321 609-614 NCBITaxon:10088 denotes mouse
T7322 661-670 GO:0010467 denotes expressed
T7323 671-682 SO:0000336 denotes pseudogenes
T7324 694-705 SO:0000336 denotes pseudogenes
T7325 717-733 SO:0000343 denotes sequence matches
T7326 744-753 GO:0010467 denotes expressed
T7327 754-764 SO:0000336 denotes pseudogene