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PMC:329117 / 22895-23152 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6553 0-257 sentence denotes In most cases (60 out of 62 cDNAs), the unusual transcript appears to be an aberrant splice form - the transcript would probably not encode a functional protein because the splice introduces a frameshift or removes conserved functional residues (Figure 6).
T6554 1-3 IN denotes In
T6555 134-140 VB denotes encode
T6556 4-8 JJS denotes most
T6557 9-14 NNS denotes cases
T6558 15-16 -LRB- denotes (
T6559 16-18 CD denotes 60
T6560 26-28 CD denotes 62
T6561 19-22 IN denotes out
T6562 23-25 IN denotes of
T6563 29-34 NNS denotes cDNAs
T6564 34-35 -RRB- denotes )
T6565 35-37 , denotes ,
T6566 37-40 DT denotes the
T6567 49-59 NN denotes transcript
T6568 41-48 JJ denotes unusual
T6569 60-67 VBZ denotes appears
T6570 68-70 TO denotes to
T6571 71-73 VB denotes be
T6572 74-76 DT denotes an
T6573 93-97 NN denotes form
T6574 77-85 JJ denotes aberrant
T6575 86-92 NN denotes splice
T6576 98-99 : denotes -
T6577 100-103 DT denotes the
T6578 104-114 NN denotes transcript
T6579 115-120 MD denotes would
T6580 121-129 RB denotes probably
T6581 130-133 RB denotes not
T6582 141-142 DT denotes a
T6583 154-161 NN denotes protein
T6584 143-153 JJ denotes functional
T6585 162-169 IN denotes because
T6586 181-191 VBZ denotes introduces
T6587 170-173 DT denotes the
T6588 174-180 NN denotes splice
T6589 192-193 DT denotes a
T6590 194-204 NN denotes frameshift
T6591 205-207 CC denotes or
T6592 208-215 VBZ denotes removes
T6593 216-225 VBN denotes conserved
T6594 237-245 NNS denotes residues
T6595 226-236 JJ denotes functional
T6596 246-247 -LRB- denotes (
T6597 247-253 NN denotes Figure
T6598 254-255 CD denotes 6
T6599 255-256 -RRB- denotes )
T6600 256-257 . denotes .
R3947 T6554 T6555 prep In,encode
R3948 T6556 T6557 amod most,cases
R3949 T6557 T6554 pobj cases,In
R3950 T6558 T6557 punct (,cases
R3951 T6559 T6560 quantmod 60,62
R3952 T6560 T6563 nummod 62,cDNAs
R3953 T6561 T6560 quantmod out,62
R3954 T6562 T6560 quantmod of,62
R3955 T6563 T6557 appos cDNAs,cases
R3956 T6564 T6557 punct ),cases
R3957 T6565 T6555 punct ", ",encode
R3958 T6566 T6567 det the,transcript
R3959 T6567 T6569 nsubj transcript,appears
R3960 T6568 T6567 amod unusual,transcript
R3961 T6569 T6555 ccomp appears,encode
R3962 T6570 T6571 aux to,be
R3963 T6571 T6569 xcomp be,appears
R3964 T6572 T6573 det an,form
R3965 T6573 T6571 attr form,be
R3966 T6574 T6573 amod aberrant,form
R3967 T6575 T6573 compound splice,form
R3968 T6576 T6555 punct -,encode
R3969 T6577 T6578 det the,transcript
R3970 T6578 T6555 nsubj transcript,encode
R3971 T6579 T6555 aux would,encode
R3972 T6580 T6555 advmod probably,encode
R3973 T6581 T6555 neg not,encode
R3974 T6582 T6583 det a,protein
R3975 T6583 T6555 dobj protein,encode
R3976 T6584 T6583 amod functional,protein
R3977 T6585 T6586 mark because,introduces
R3978 T6586 T6555 advcl introduces,encode
R3979 T6587 T6588 det the,splice
R3980 T6588 T6586 nsubj splice,introduces
R3981 T6589 T6590 det a,frameshift
R3982 T6590 T6586 dobj frameshift,introduces
R3983 T6591 T6586 cc or,introduces
R3984 T6592 T6586 conj removes,introduces
R3985 T6593 T6594 amod conserved,residues
R3986 T6594 T6592 dobj residues,removes
R3987 T6595 T6594 amod functional,residues
R3988 T6596 T6597 punct (,Figure
R3989 T6597 T6555 parataxis Figure,encode
R3990 T6598 T6597 nummod 6,Figure
R3991 T6599 T6597 punct ),Figure
R3992 T6600 T6555 punct .,encode

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6275 29-34 SO_EXT:cDNA denotes cDNAs
T6276 49-59 SO_EXT:0000673 denotes transcript
T6277 86-92 GO:0008380 denotes splice
T6278 86-97 SO_EXT:alternative_splice_variant denotes splice form
T6279 104-114 SO_EXT:0000673 denotes transcript
T6280 134-140 SO_EXT:sequence_coding_function denotes encode
T6281 154-161 CHEBI_PR_EXT:protein denotes protein
T6282 174-180 GO:0008380 denotes splice
T6283 194-204 GO_SO_EXT:frameshift_entity_or_process denotes frameshift
T6284 216-225 SO_EXT:biological_conservation_process_or_quality denotes conserved
T6285 237-245 CHEBI_EXT:residue denotes residues

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6156 49-59 SO:0000673 denotes transcript
T6157 86-92 GO:0008380 denotes splice
T6158 104-114 SO:0000673 denotes transcript
T6159 174-180 GO:0008380 denotes splice