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PMC:329117 / 22236-23965 JSONTXT

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Id Subject Object Predicate Lexical cue
T6426 0-2 PRP denotes We
T6427 3-13 VBD denotes identified
T6428 14-16 CD denotes 62
T6429 17-22 NNS denotes cDNAs
T6430 23-24 -LRB- denotes (
T6431 25-26 NN denotes %
T6432 24-25 CD denotes 5
T6433 27-29 IN denotes of
T6434 30-33 DT denotes all
T6435 53-59 NNS denotes clones
T6436 34-43 JJ denotes olfactory
T6437 44-52 NN denotes receptor
T6438 59-60 -RRB- denotes )
T6439 61-65 IN denotes from
T6440 66-68 CD denotes 38
T6441 86-95 NNS denotes receptors
T6442 69-75 JJ denotes intact
T6443 76-85 JJ denotes olfactory
T6444 96-99 CC denotes and
T6445 100-103 CD denotes one
T6446 123-133 NN denotes pseudogene
T6447 104-113 JJ denotes olfactory
T6448 114-122 NN denotes receptor
T6449 134-139 WRB denotes where
T6450 190-194 VBN denotes used
T6451 140-141 DT denotes a
T6452 149-153 NN denotes site
T6453 142-148 NN denotes splice
T6454 154-160 IN denotes within
T6455 161-164 DT denotes the
T6456 180-186 NN denotes region
T6457 165-172 NN denotes protein
T6458 173-179 VBG denotes coding
T6459 172-173 HYPH denotes -
T6460 187-189 VBZ denotes is
T6461 194-195 . denotes .
T6462 195-402 sentence denotes For two genes (top two cDNAs, Figure 6), the predicted protein appears to be an intact olfactory receptor with three or ten amino acids, including the initiating methionine, contributed by an upstream exon.
T6463 196-199 IN denotes For
T6464 259-266 VBZ denotes appears
T6465 200-203 CD denotes two
T6466 204-209 NNS denotes genes
T6467 210-211 -LRB- denotes (
T6468 226-232 NN denotes Figure
T6469 211-214 JJ denotes top
T6470 219-224 NNS denotes cDNAs
T6471 215-218 CD denotes two
T6472 224-226 , denotes ,
T6473 233-234 CD denotes 6
T6474 234-235 -RRB- denotes )
T6475 235-237 , denotes ,
T6476 237-240 DT denotes the
T6477 251-258 NN denotes protein
T6478 241-250 VBN denotes predicted
T6479 267-269 TO denotes to
T6480 270-272 VB denotes be
T6481 273-275 DT denotes an
T6482 293-301 NN denotes receptor
T6483 276-282 JJ denotes intact
T6484 283-292 JJ denotes olfactory
T6485 302-306 IN denotes with
T6486 307-312 CD denotes three
T6487 326-331 NNS denotes acids
T6488 313-315 CC denotes or
T6489 316-319 CD denotes ten
T6490 320-325 NN denotes amino
T6491 331-333 , denotes ,
T6492 333-342 VBG denotes including
T6493 343-346 DT denotes the
T6494 358-368 NN denotes methionine
T6495 347-357 VBG denotes initiating
T6496 368-370 , denotes ,
T6497 370-381 VBN denotes contributed
T6498 382-384 IN denotes by
T6499 385-387 DT denotes an
T6500 397-401 NN denotes exon
T6501 388-396 JJ denotes upstream
T6502 401-402 . denotes .
T6503 402-489 sentence denotes A similar gene structure was described previously for a human olfactory receptor [25].
T6504 403-404 DT denotes A
T6505 418-427 NN denotes structure
T6506 405-412 JJ denotes similar
T6507 413-417 NN denotes gene
T6508 432-441 VBN denotes described
T6509 428-431 VBD denotes was
T6510 442-452 RB denotes previously
T6511 453-456 IN denotes for
T6512 457-458 DT denotes a
T6513 475-483 NN denotes receptor
T6514 459-464 JJ denotes human
T6515 465-474 JJ denotes olfactory
T6516 484-485 -LRB- denotes [
T6517 485-487 CD denotes 25
T6518 487-488 -RRB- denotes ]
T6519 488-489 . denotes .
T6520 489-579 sentence denotes One of these two mouse genes has no start codon in its otherwise intact main coding exon.
T6521 490-493 CD denotes One
T6522 519-522 VBZ denotes has
T6523 494-496 IN denotes of
T6524 497-502 DT denotes these
T6525 513-518 NNS denotes genes
T6526 503-506 CD denotes two
T6527 507-512 NN denotes mouse
T6528 523-525 DT denotes no
T6529 532-537 NN denotes codon
T6530 526-531 NN denotes start
T6531 538-540 IN denotes in
T6532 541-544 PRP$ denotes its
T6533 574-578 NN denotes exon
T6534 545-554 RB denotes otherwise
T6535 555-561 JJ denotes intact
T6536 562-566 JJ denotes main
T6537 567-573 VBG denotes coding
T6538 578-579 . denotes .
T6539 579-659 sentence denotes The unusual splicing thus rescues what would otherwise be a dysfunctional gene.
T6540 580-583 DT denotes The
T6541 592-600 NN denotes splicing
T6542 584-591 JJ denotes unusual
T6543 606-613 VBZ denotes rescues
T6544 601-605 RB denotes thus
T6545 614-618 WP denotes what
T6546 635-637 VB denotes be
T6547 619-624 MD denotes would
T6548 625-634 RB denotes otherwise
T6549 638-639 DT denotes a
T6550 654-658 NN denotes gene
T6551 640-653 JJ denotes dysfunctional
T6552 658-659 . denotes .
T6553 659-916 sentence denotes In most cases (60 out of 62 cDNAs), the unusual transcript appears to be an aberrant splice form - the transcript would probably not encode a functional protein because the splice introduces a frameshift or removes conserved functional residues (Figure 6).
T6554 660-662 IN denotes In
T6555 793-799 VB denotes encode
T6556 663-667 JJS denotes most
T6557 668-673 NNS denotes cases
T6558 674-675 -LRB- denotes (
T6559 675-677 CD denotes 60
T6560 685-687 CD denotes 62
T6561 678-681 IN denotes out
T6562 682-684 IN denotes of
T6563 688-693 NNS denotes cDNAs
T6564 693-694 -RRB- denotes )
T6565 694-696 , denotes ,
T6566 696-699 DT denotes the
T6567 708-718 NN denotes transcript
T6568 700-707 JJ denotes unusual
T6569 719-726 VBZ denotes appears
T6570 727-729 TO denotes to
T6571 730-732 VB denotes be
T6572 733-735 DT denotes an
T6573 752-756 NN denotes form
T6574 736-744 JJ denotes aberrant
T6575 745-751 NN denotes splice
T6576 757-758 : denotes -
T6577 759-762 DT denotes the
T6578 763-773 NN denotes transcript
T6579 774-779 MD denotes would
T6580 780-788 RB denotes probably
T6581 789-792 RB denotes not
T6582 800-801 DT denotes a
T6583 813-820 NN denotes protein
T6584 802-812 JJ denotes functional
T6585 821-828 IN denotes because
T6586 840-850 VBZ denotes introduces
T6587 829-832 DT denotes the
T6588 833-839 NN denotes splice
T6589 851-852 DT denotes a
T6590 853-863 NN denotes frameshift
T6591 864-866 CC denotes or
T6592 867-874 VBZ denotes removes
T6593 875-884 VBN denotes conserved
T6594 896-904 NNS denotes residues
T6595 885-895 JJ denotes functional
T6596 905-906 -LRB- denotes (
T6597 906-912 NN denotes Figure
T6598 913-914 CD denotes 6
T6599 914-915 -RRB- denotes )
T6600 915-916 . denotes .
T6601 916-1047 sentence denotes For two clones (bottom two cDNAs, Figure 6), exon order in the cDNA clone is inconsistent with the corresponding genomic sequence.
T6602 917-920 IN denotes For
T6603 991-993 VBZ denotes is
T6604 921-924 CD denotes two
T6605 925-931 NNS denotes clones
T6606 932-933 -LRB- denotes (
T6607 951-957 NN denotes Figure
T6608 933-939 JJ denotes bottom
T6609 944-949 NNS denotes cDNAs
T6610 940-943 CD denotes two
T6611 949-951 , denotes ,
T6612 958-959 CD denotes 6
T6613 959-960 -RRB- denotes )
T6614 960-962 , denotes ,
T6615 962-966 NN denotes exon
T6616 967-972 NN denotes order
T6617 973-975 IN denotes in
T6618 976-979 DT denotes the
T6619 985-990 NN denotes clone
T6620 980-984 NN denotes cDNA
T6621 994-1006 JJ denotes inconsistent
T6622 1007-1011 IN denotes with
T6623 1012-1015 DT denotes the
T6624 1038-1046 NN denotes sequence
T6625 1016-1029 JJ denotes corresponding
T6626 1030-1037 JJ denotes genomic
T6627 1046-1047 . denotes .
T6628 1047-1208 sentence denotes It is difficult to imagine what kind of cloning artefact resulted in these severely scrambled cDNAs: we suggest that they derive from real but rare transcripts.
T6629 1048-1050 PRP denotes It
T6630 1051-1053 VBZ denotes is
T6631 1152-1159 VBP denotes suggest
T6632 1054-1063 JJ denotes difficult
T6633 1064-1066 TO denotes to
T6634 1067-1074 VB denotes imagine
T6635 1075-1079 WDT denotes what
T6636 1080-1084 NN denotes kind
T6637 1105-1113 VBD denotes resulted
T6638 1085-1087 IN denotes of
T6639 1088-1095 VBG denotes cloning
T6640 1096-1104 NN denotes artefact
T6641 1114-1116 IN denotes in
T6642 1117-1122 DT denotes these
T6643 1142-1147 NNS denotes cDNAs
T6644 1123-1131 RB denotes severely
T6645 1132-1141 VBN denotes scrambled
T6646 1147-1149 : denotes :
T6647 1149-1151 PRP denotes we
T6648 1160-1164 IN denotes that
T6649 1170-1176 VBP denotes derive
T6650 1165-1169 PRP denotes they
T6651 1177-1181 IN denotes from
T6652 1182-1186 JJ denotes real
T6653 1196-1207 NNS denotes transcripts
T6654 1187-1190 CC denotes but
T6655 1191-1195 JJ denotes rare
T6656 1207-1208 . denotes .
T6657 1208-1399 sentence denotes However, their low frequency in our cDNA collection suggests that splicing contrary to genomic organization does not contribute significantly to the olfactory receptor transcript repertoire.
T6658 1209-1216 RB denotes However
T6659 1261-1269 VBZ denotes suggests
T6660 1216-1218 , denotes ,
T6661 1218-1223 PRP$ denotes their
T6662 1228-1237 NN denotes frequency
T6663 1224-1227 JJ denotes low
T6664 1238-1240 IN denotes in
T6665 1241-1244 PRP$ denotes our
T6666 1250-1260 NN denotes collection
T6667 1245-1249 NN denotes cDNA
T6668 1270-1274 IN denotes that
T6669 1326-1336 VB denotes contribute
T6670 1275-1283 NN denotes splicing
T6671 1284-1292 JJ denotes contrary
T6672 1293-1295 IN denotes to
T6673 1296-1303 JJ denotes genomic
T6674 1304-1316 NN denotes organization
T6675 1317-1321 VBZ denotes does
T6676 1322-1325 RB denotes not
T6677 1337-1350 RB denotes significantly
T6678 1351-1353 IN denotes to
T6679 1354-1357 DT denotes the
T6680 1388-1398 NN denotes repertoire
T6681 1358-1367 JJ denotes olfactory
T6682 1368-1376 NN denotes receptor
T6683 1377-1387 NN denotes transcript
T6684 1398-1399 . denotes .
T6685 1399-1575 sentence denotes For 21 of the 26 genes for which unusually spliced cDNAs were found, we also observe an alternative ('normal') isoform that does not use splice sites within the coding region.
T6686 1400-1403 IN denotes For
T6687 1477-1484 VBP denotes observe
T6688 1404-1406 CD denotes 21
T6689 1414-1416 CD denotes 26
T6690 1407-1409 IN denotes of
T6691 1410-1413 DT denotes the
T6692 1417-1422 NNS denotes genes
T6693 1423-1426 IN denotes for
T6694 1462-1467 VBN denotes found
T6695 1427-1432 WDT denotes which
T6696 1433-1442 RB denotes unusually
T6697 1443-1450 VBN denotes spliced
T6698 1451-1456 NNS denotes cDNAs
T6699 1457-1461 VBD denotes were
T6700 1467-1469 , denotes ,
T6701 1469-1471 PRP denotes we
T6702 1472-1476 RB denotes also
T6703 1485-1487 DT denotes an
T6704 1511-1518 NN denotes isoform
T6705 1488-1499 JJ denotes alternative
T6706 1500-1501 -LRB- denotes (
T6707 1501-1502 `` denotes '
T6708 1502-1508 JJ denotes normal
T6709 1508-1509 '' denotes '
T6710 1509-1510 -RRB- denotes )
T6711 1519-1523 WDT denotes that
T6712 1533-1536 VB denotes use
T6713 1524-1528 VBZ denotes does
T6714 1529-1532 RB denotes not
T6715 1537-1543 NN denotes splice
T6716 1544-1549 NNS denotes sites
T6717 1550-1556 IN denotes within
T6718 1557-1560 DT denotes the
T6719 1568-1574 NN denotes region
T6720 1561-1567 VBG denotes coding
T6721 1574-1575 . denotes .
T6722 1575-1729 sentence denotes (For the remaining 13 of the 3' genes showing odd splicing, we have identified only one cDNA so have not determined whether normal isoforms are present.)
T6723 1576-1577 -LRB- denotes (
T6724 1644-1654 VBN denotes identified
T6725 1577-1580 IN denotes For
T6726 1581-1584 DT denotes the
T6727 1595-1597 CD denotes 13
T6728 1585-1594 VBG denotes remaining
T6729 1598-1600 IN denotes of
T6730 1601-1604 DT denotes the
T6731 1608-1613 NNS denotes genes
T6732 1605-1606 CD denotes 3
T6733 1606-1607 SYM denotes '
T6734 1614-1621 VBG denotes showing
T6735 1622-1625 JJ denotes odd
T6736 1626-1634 NN denotes splicing
T6737 1634-1636 , denotes ,
T6738 1636-1638 PRP denotes we
T6739 1639-1643 VBP denotes have
T6740 1655-1659 RB denotes only
T6741 1664-1668 NN denotes cDNA
T6742 1660-1663 CD denotes one
T6743 1669-1671 CC denotes so
T6744 1672-1676 VBP denotes have
T6745 1681-1691 VBN denotes determined
T6746 1677-1680 RB denotes not
T6747 1692-1699 IN denotes whether
T6748 1716-1719 VBP denotes are
T6749 1700-1706 JJ denotes normal
T6750 1707-1715 NNS denotes isoforms
T6751 1720-1727 JJ denotes present
T6752 1727-1728 . denotes .
T6753 1728-1729 -RRB- denotes )
R3829 T6426 T6427 nsubj We,identified
R3830 T6428 T6429 nummod 62,cDNAs
R3831 T6429 T6427 dobj cDNAs,identified
R3832 T6430 T6431 punct (,%
R3833 T6431 T6429 parataxis %,cDNAs
R3834 T6432 T6431 nummod 5,%
R3835 T6433 T6431 prep of,%
R3836 T6434 T6435 det all,clones
R3837 T6435 T6433 pobj clones,of
R3838 T6436 T6437 amod olfactory,receptor
R3839 T6437 T6435 compound receptor,clones
R3840 T6438 T6431 punct ),%
R3841 T6439 T6427 prep from,identified
R3842 T6440 T6441 nummod 38,receptors
R3843 T6441 T6439 pobj receptors,from
R3844 T6442 T6441 amod intact,receptors
R3845 T6443 T6441 amod olfactory,receptors
R3846 T6444 T6441 cc and,receptors
R3847 T6445 T6446 nummod one,pseudogene
R3848 T6446 T6441 conj pseudogene,receptors
R3849 T6447 T6448 amod olfactory,receptor
R3850 T6448 T6446 compound receptor,pseudogene
R3851 T6449 T6450 advmod where,used
R3852 T6450 T6446 relcl used,pseudogene
R3853 T6451 T6452 det a,site
R3854 T6452 T6450 nsubjpass site,used
R3855 T6453 T6452 compound splice,site
R3856 T6454 T6452 prep within,site
R3857 T6455 T6456 det the,region
R3858 T6456 T6454 pobj region,within
R3859 T6457 T6458 npadvmod protein,coding
R3860 T6458 T6456 amod coding,region
R3861 T6459 T6458 punct -,coding
R3862 T6460 T6450 auxpass is,used
R3863 T6461 T6427 punct .,identified
R3864 T6463 T6464 prep For,appears
R3865 T6465 T6466 nummod two,genes
R3866 T6466 T6463 pobj genes,For
R3867 T6467 T6468 punct (,Figure
R3868 T6468 T6466 parataxis Figure,genes
R3869 T6469 T6470 amod top,cDNAs
R3870 T6470 T6468 dep cDNAs,Figure
R3871 T6471 T6470 nummod two,cDNAs
R3872 T6472 T6468 punct ", ",Figure
R3873 T6473 T6468 nummod 6,Figure
R3874 T6474 T6468 punct ),Figure
R3875 T6475 T6464 punct ", ",appears
R3876 T6476 T6477 det the,protein
R3877 T6477 T6464 nsubj protein,appears
R3878 T6478 T6477 amod predicted,protein
R3879 T6479 T6480 aux to,be
R3880 T6480 T6464 xcomp be,appears
R3881 T6481 T6482 det an,receptor
R3882 T6482 T6480 attr receptor,be
R3883 T6483 T6482 amod intact,receptor
R3884 T6484 T6482 amod olfactory,receptor
R3885 T6485 T6482 prep with,receptor
R3886 T6486 T6487 nummod three,acids
R3887 T6487 T6485 pobj acids,with
R3888 T6488 T6486 cc or,three
R3889 T6489 T6486 conj ten,three
R3890 T6490 T6487 compound amino,acids
R3891 T6491 T6487 punct ", ",acids
R3892 T6492 T6487 prep including,acids
R3893 T6493 T6494 det the,methionine
R3894 T6494 T6492 pobj methionine,including
R3895 T6495 T6494 amod initiating,methionine
R3896 T6496 T6487 punct ", ",acids
R3897 T6497 T6487 acl contributed,acids
R3898 T6498 T6497 agent by,contributed
R3899 T6499 T6500 det an,exon
R3900 T6500 T6498 pobj exon,by
R3901 T6501 T6500 amod upstream,exon
R3902 T6502 T6464 punct .,appears
R3903 T6504 T6505 det A,structure
R3904 T6505 T6508 nsubjpass structure,described
R3905 T6506 T6505 amod similar,structure
R3906 T6507 T6505 compound gene,structure
R3907 T6509 T6508 auxpass was,described
R3908 T6510 T6508 advmod previously,described
R3909 T6511 T6508 prep for,described
R3910 T6512 T6513 det a,receptor
R3911 T6513 T6511 pobj receptor,for
R3912 T6514 T6513 amod human,receptor
R3913 T6515 T6513 amod olfactory,receptor
R3914 T6516 T6517 punct [,25
R3915 T6517 T6508 parataxis 25,described
R3916 T6518 T6517 punct ],25
R3917 T6519 T6508 punct .,described
R3918 T6521 T6522 nsubj One,has
R3919 T6523 T6521 prep of,One
R3920 T6524 T6525 det these,genes
R3921 T6525 T6523 pobj genes,of
R3922 T6526 T6525 nummod two,genes
R3923 T6527 T6525 compound mouse,genes
R3924 T6528 T6529 det no,codon
R3925 T6529 T6522 dobj codon,has
R3926 T6530 T6529 compound start,codon
R3927 T6531 T6529 prep in,codon
R3928 T6532 T6533 poss its,exon
R3929 T6533 T6531 pobj exon,in
R3930 T6534 T6535 advmod otherwise,intact
R3931 T6535 T6533 amod intact,exon
R3932 T6536 T6533 amod main,exon
R3933 T6537 T6533 amod coding,exon
R3934 T6538 T6522 punct .,has
R3935 T6540 T6541 det The,splicing
R3936 T6541 T6543 nsubj splicing,rescues
R3937 T6542 T6541 amod unusual,splicing
R3938 T6544 T6543 advmod thus,rescues
R3939 T6545 T6546 dep what,be
R3940 T6546 T6543 ccomp be,rescues
R3941 T6547 T6546 aux would,be
R3942 T6548 T6546 advmod otherwise,be
R3943 T6549 T6550 det a,gene
R3944 T6550 T6546 attr gene,be
R3945 T6551 T6550 amod dysfunctional,gene
R3946 T6552 T6543 punct .,rescues
R3947 T6554 T6555 prep In,encode
R3948 T6556 T6557 amod most,cases
R3949 T6557 T6554 pobj cases,In
R3950 T6558 T6557 punct (,cases
R3951 T6559 T6560 quantmod 60,62
R3952 T6560 T6563 nummod 62,cDNAs
R3953 T6561 T6560 quantmod out,62
R3954 T6562 T6560 quantmod of,62
R3955 T6563 T6557 appos cDNAs,cases
R3956 T6564 T6557 punct ),cases
R3957 T6565 T6555 punct ", ",encode
R3958 T6566 T6567 det the,transcript
R3959 T6567 T6569 nsubj transcript,appears
R3960 T6568 T6567 amod unusual,transcript
R3961 T6569 T6555 ccomp appears,encode
R3962 T6570 T6571 aux to,be
R3963 T6571 T6569 xcomp be,appears
R3964 T6572 T6573 det an,form
R3965 T6573 T6571 attr form,be
R3966 T6574 T6573 amod aberrant,form
R3967 T6575 T6573 compound splice,form
R3968 T6576 T6555 punct -,encode
R3969 T6577 T6578 det the,transcript
R3970 T6578 T6555 nsubj transcript,encode
R3971 T6579 T6555 aux would,encode
R3972 T6580 T6555 advmod probably,encode
R3973 T6581 T6555 neg not,encode
R3974 T6582 T6583 det a,protein
R3975 T6583 T6555 dobj protein,encode
R3976 T6584 T6583 amod functional,protein
R3977 T6585 T6586 mark because,introduces
R3978 T6586 T6555 advcl introduces,encode
R3979 T6587 T6588 det the,splice
R3980 T6588 T6586 nsubj splice,introduces
R3981 T6589 T6590 det a,frameshift
R3982 T6590 T6586 dobj frameshift,introduces
R3983 T6591 T6586 cc or,introduces
R3984 T6592 T6586 conj removes,introduces
R3985 T6593 T6594 amod conserved,residues
R3986 T6594 T6592 dobj residues,removes
R3987 T6595 T6594 amod functional,residues
R3988 T6596 T6597 punct (,Figure
R3989 T6597 T6555 parataxis Figure,encode
R3990 T6598 T6597 nummod 6,Figure
R3991 T6599 T6597 punct ),Figure
R3992 T6600 T6555 punct .,encode
R3993 T6602 T6603 prep For,is
R3994 T6604 T6605 nummod two,clones
R3995 T6605 T6602 pobj clones,For
R3996 T6606 T6607 punct (,Figure
R3997 T6607 T6605 parataxis Figure,clones
R3998 T6608 T6609 amod bottom,cDNAs
R3999 T6609 T6607 dep cDNAs,Figure
R4000 T6610 T6609 nummod two,cDNAs
R4001 T6611 T6607 punct ", ",Figure
R4002 T6612 T6607 nummod 6,Figure
R4003 T6613 T6607 punct ),Figure
R4004 T6614 T6603 punct ", ",is
R4005 T6615 T6616 compound exon,order
R4006 T6616 T6603 nsubj order,is
R4007 T6617 T6616 prep in,order
R4008 T6618 T6619 det the,clone
R4009 T6619 T6617 pobj clone,in
R4010 T6620 T6619 compound cDNA,clone
R4011 T6621 T6603 acomp inconsistent,is
R4012 T6622 T6621 prep with,inconsistent
R4013 T6623 T6624 det the,sequence
R4014 T6624 T6622 pobj sequence,with
R4015 T6625 T6624 amod corresponding,sequence
R4016 T6626 T6624 amod genomic,sequence
R4017 T6627 T6603 punct .,is
R4018 T6629 T6630 nsubj It,is
R4019 T6630 T6631 ccomp is,suggest
R4020 T6632 T6630 acomp difficult,is
R4021 T6633 T6634 aux to,imagine
R4022 T6634 T6630 xcomp imagine,is
R4023 T6635 T6636 det what,kind
R4024 T6636 T6637 dep kind,resulted
R4025 T6637 T6634 ccomp resulted,imagine
R4026 T6638 T6636 prep of,kind
R4027 T6639 T6640 amod cloning,artefact
R4028 T6640 T6638 pobj artefact,of
R4029 T6641 T6637 prep in,resulted
R4030 T6642 T6643 det these,cDNAs
R4031 T6643 T6641 pobj cDNAs,in
R4032 T6644 T6645 advmod severely,scrambled
R4033 T6645 T6643 amod scrambled,cDNAs
R4034 T6646 T6631 punct : ,suggest
R4035 T6647 T6631 nsubj we,suggest
R4036 T6648 T6649 mark that,derive
R4037 T6649 T6631 ccomp derive,suggest
R4038 T6650 T6649 nsubj they,derive
R4039 T6651 T6649 prep from,derive
R4040 T6652 T6653 amod real,transcripts
R4041 T6653 T6651 pobj transcripts,from
R4042 T6654 T6652 cc but,real
R4043 T6655 T6652 conj rare,real
R4044 T6656 T6631 punct .,suggest
R4045 T6658 T6659 advmod However,suggests
R4046 T6660 T6659 punct ", ",suggests
R4047 T6661 T6662 poss their,frequency
R4048 T6662 T6659 nsubj frequency,suggests
R4049 T6663 T6662 amod low,frequency
R4050 T6664 T6662 prep in,frequency
R4051 T6665 T6666 poss our,collection
R4052 T6666 T6664 pobj collection,in
R4053 T6667 T6666 compound cDNA,collection
R4054 T6668 T6669 mark that,contribute
R4055 T6669 T6659 ccomp contribute,suggests
R4056 T6670 T6669 nsubj splicing,contribute
R4057 T6671 T6670 amod contrary,splicing
R4058 T6672 T6671 prep to,contrary
R4059 T6673 T6674 amod genomic,organization
R4060 T6674 T6672 pobj organization,to
R4061 T6675 T6669 aux does,contribute
R4062 T6676 T6669 neg not,contribute
R4063 T6677 T6669 advmod significantly,contribute
R4064 T6678 T6669 prep to,contribute
R4065 T6679 T6680 det the,repertoire
R4066 T6680 T6678 pobj repertoire,to
R4067 T6681 T6682 amod olfactory,receptor
R4068 T6682 T6680 compound receptor,repertoire
R4069 T6683 T6680 compound transcript,repertoire
R4070 T6684 T6659 punct .,suggests
R4071 T6686 T6687 prep For,observe
R4072 T6688 T6689 quantmod 21,26
R4073 T6689 T6692 nummod 26,genes
R4074 T6690 T6689 quantmod of,26
R4075 T6691 T6689 quantmod the,26
R4076 T6692 T6686 pobj genes,For
R4077 T6693 T6694 prep for,found
R4078 T6694 T6692 relcl found,genes
R4079 T6695 T6693 pobj which,for
R4080 T6696 T6697 advmod unusually,spliced
R4081 T6697 T6698 amod spliced,cDNAs
R4082 T6698 T6694 nsubjpass cDNAs,found
R4083 T6699 T6694 auxpass were,found
R4084 T6700 T6687 punct ", ",observe
R4085 T6701 T6687 nsubj we,observe
R4086 T6702 T6687 advmod also,observe
R4087 T6703 T6704 det an,isoform
R4088 T6704 T6687 dobj isoform,observe
R4089 T6705 T6704 amod alternative,isoform
R4090 T6706 T6704 punct (,isoform
R4091 T6707 T6704 punct ',isoform
R4092 T6708 T6704 amod normal,isoform
R4093 T6709 T6704 punct ',isoform
R4094 T6710 T6704 punct ),isoform
R4095 T6711 T6712 dep that,use
R4096 T6712 T6704 relcl use,isoform
R4097 T6713 T6712 aux does,use
R4098 T6714 T6712 neg not,use
R4099 T6715 T6716 compound splice,sites
R4100 T6716 T6712 dobj sites,use
R4101 T6717 T6716 prep within,sites
R4102 T6718 T6719 det the,region
R4103 T6719 T6717 pobj region,within
R4104 T6720 T6719 amod coding,region
R4105 T6721 T6687 punct .,observe
R4106 T6723 T6724 punct (,identified
R4107 T6725 T6724 prep For,identified
R4108 T6726 T6727 det the,13
R4109 T6727 T6725 pobj 13,For
R4110 T6728 T6727 amod remaining,13
R4111 T6729 T6727 prep of,13
R4112 T6730 T6731 det the,genes
R4113 T6731 T6729 pobj genes,of
R4114 T6732 T6731 nummod 3,genes
R4115 T6733 T6732 punct ',3
R4116 T6734 T6731 acl showing,genes
R4117 T6735 T6736 amod odd,splicing
R4118 T6736 T6734 dobj splicing,showing
R4119 T6737 T6724 punct ", ",identified
R4120 T6738 T6724 nsubj we,identified
R4121 T6739 T6724 aux have,identified
R4122 T6740 T6741 advmod only,cDNA
R4123 T6741 T6724 dobj cDNA,identified
R4124 T6742 T6741 nummod one,cDNA
R4125 T6743 T6724 cc so,identified
R4126 T6744 T6745 aux have,determined
R4127 T6745 T6724 conj determined,identified
R4128 T6746 T6745 neg not,determined
R4129 T6747 T6748 mark whether,are
R4130 T6748 T6745 ccomp are,determined
R4131 T6749 T6750 amod normal,isoforms
R4132 T6750 T6748 nsubj isoforms,are
R4133 T6751 T6748 acomp present,are
R4134 T6752 T6724 punct .,identified
R4135 T6753 T6724 punct ),identified

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6240 17-22 SO_EXT:cDNA denotes cDNAs
T6241 34-43 GO:0007608 denotes olfactory
T6242 34-52 GO_EXT:0004984 denotes olfactory receptor
T6243 53-59 SO_EXT:sequence_cloned_entity denotes clones
T6244 76-85 GO:0007608 denotes olfactory
T6245 76-95 GO_EXT:0004984 denotes olfactory receptors
T6246 104-113 GO:0007608 denotes olfactory
T6247 104-122 GO_EXT:0004984 denotes olfactory receptor
T6248 123-133 SO_EXT:0000336 denotes pseudogene
T6249 142-148 GO:0008380 denotes splice
T6250 142-153 SO_EXT:0000162 denotes splice site
T6251 149-160 _FRAGMENT denotes site within
T6252 173-186 SO_EXT:0000851 denotes coding region
T6253 165-172 CHEBI_PR_EXT:protein denotes protein
T6254 165-179 SO:0000010 denotes protein-coding
T6255 204-209 SO_EXT:0000704 denotes genes
T6256 219-224 SO_EXT:cDNA denotes cDNAs
T6257 251-258 CHEBI_PR_EXT:protein denotes protein
T6258 283-292 GO:0007608 denotes olfactory
T6259 283-301 GO_EXT:0004984 denotes olfactory receptor
T6260 320-331 CHEBI_SO_EXT:amino_acid denotes amino acids
T6261 358-368 CHEBI_SO_EXT:methionine denotes methionine
T6262 388-396 SO_EXT:sequence_upstreamness denotes upstream
T6263 397-401 SO_EXT:0000147 denotes exon
T6264 413-417 SO_EXT:0000704 denotes gene
T6265 459-464 NCBITaxon:9606 denotes human
T6266 465-474 GO:0007608 denotes olfactory
T6267 465-483 GO_EXT:0004984 denotes olfactory receptor
T6268 507-512 NCBITaxon:10088 denotes mouse
T6269 513-518 SO_EXT:0000704 denotes genes
T6270 526-537 SO_EXT:0000318 denotes start codon
T6271 567-578 SO_EXT:0000195 denotes coding exon
T6272 592-600 GO:0008380 denotes splicing
T6273 606-613 SO_EXT:sequence_rescue_process denotes rescues
T6274 654-658 SO_EXT:0000704 denotes gene
T6275 688-693 SO_EXT:cDNA denotes cDNAs
T6276 708-718 SO_EXT:0000673 denotes transcript
T6277 745-751 GO:0008380 denotes splice
T6278 745-756 SO_EXT:alternative_splice_variant denotes splice form
T6279 763-773 SO_EXT:0000673 denotes transcript
T6280 793-799 SO_EXT:sequence_coding_function denotes encode
T6281 813-820 CHEBI_PR_EXT:protein denotes protein
T6282 833-839 GO:0008380 denotes splice
T6283 853-863 GO_SO_EXT:frameshift_entity_or_process denotes frameshift
T6284 875-884 SO_EXT:biological_conservation_process_or_quality denotes conserved
T6285 896-904 CHEBI_EXT:residue denotes residues
T6286 925-931 SO_EXT:sequence_cloned_entity denotes clones
T6287 944-949 SO_EXT:cDNA denotes cDNAs
T6288 962-966 SO_EXT:0000147 denotes exon
T6289 980-990 SO_EXT:0000317 denotes cDNA clone
T6290 1030-1037 SO_EXT:0001026 denotes genomic
T6291 1038-1046 SO_EXT:biological_sequence denotes sequence
T6292 1088-1095 SO_EXT:sequence_cloning_process denotes cloning
T6293 1142-1147 SO_EXT:cDNA denotes cDNAs
T6294 1196-1207 SO_EXT:0000673 denotes transcripts
T6295 1245-1249 SO_EXT:cDNA denotes cDNA
T6296 1275-1283 GO:0008380 denotes splicing
T6297 1296-1303 SO_EXT:0001026 denotes genomic
T6298 1358-1367 GO:0007608 denotes olfactory
T6299 1358-1376 GO_EXT:0004984 denotes olfactory receptor
T6300 1377-1387 SO_EXT:0000673 denotes transcript
T6301 1417-1422 SO_EXT:0000704 denotes genes
T6302 1443-1450 GO:0008380 denotes spliced
T6303 1451-1456 SO_EXT:cDNA denotes cDNAs
T6304 1511-1518 SO_EXT:0001060 denotes isoform
T6305 1537-1543 GO:0008380 denotes splice
T6306 1537-1549 SO_EXT:0000162 denotes splice sites
T6307 1544-1556 _FRAGMENT denotes sites within
T6308 1561-1574 SO_EXT:0000851 denotes coding region
T6309 1608-1613 SO_EXT:0000704 denotes genes
T6310 1626-1634 GO:0008380 denotes splicing
T6311 1664-1668 SO_EXT:cDNA denotes cDNA
T6312 1707-1715 SO_EXT:0001060 denotes isoforms
R3817 T6252 T6251 _lexicallyChainedTo coding region,site within
R3818 T6308 T6307 _lexicallyChainedTo coding region,sites within

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6135 34-43 GO:0007608 denotes olfactory
T6136 76-85 GO:0007608 denotes olfactory
T6137 104-113 GO:0007608 denotes olfactory
T6138 123-133 SO:0000336 denotes pseudogene
T6139 142-148 GO:0008380 denotes splice
T6140 142-153 SO:0000162 denotes splice site
T6141 149-160 _FRAGMENT denotes site within
T6142 173-186 SO:0000851 denotes coding region
T6143 165-179 SO:0000010 denotes protein-coding
T6144 204-209 SO:0000704 denotes genes
T6145 283-292 GO:0007608 denotes olfactory
T6146 397-401 SO:0000147 denotes exon
T6147 413-417 SO:0000704 denotes gene
T6148 459-464 NCBITaxon:9606 denotes human
T6149 465-474 GO:0007608 denotes olfactory
T6150 507-512 NCBITaxon:10088 denotes mouse
T6151 513-518 SO:0000704 denotes genes
T6152 526-537 SO:0000318 denotes start codon
T6153 567-578 SO:0000195 denotes coding exon
T6154 592-600 GO:0008380 denotes splicing
T6155 654-658 SO:0000704 denotes gene
T6156 708-718 SO:0000673 denotes transcript
T6157 745-751 GO:0008380 denotes splice
T6158 763-773 SO:0000673 denotes transcript
T6159 833-839 GO:0008380 denotes splice
T6160 962-966 SO:0000147 denotes exon
T6161 980-990 SO:0000317 denotes cDNA clone
T6162 1030-1037 SO:0001026 denotes genomic
T6163 1196-1207 SO:0000673 denotes transcripts
T6164 1275-1283 GO:0008380 denotes splicing
T6165 1296-1303 SO:0001026 denotes genomic
T6166 1358-1367 GO:0007608 denotes olfactory
T6167 1377-1387 SO:0000673 denotes transcript
T6168 1417-1422 SO:0000704 denotes genes
T6169 1443-1450 GO:0008380 denotes spliced
T6170 1511-1518 SO:0001060 denotes isoform
T6171 1537-1543 GO:0008380 denotes splice
T6172 1537-1549 SO:0000162 denotes splice sites
T6173 1544-1556 _FRAGMENT denotes sites within
T6174 1561-1574 SO:0000851 denotes coding region
T6175 1608-1613 SO:0000704 denotes genes
T6176 1626-1634 GO:0008380 denotes splicing
T6177 1707-1715 SO:0001060 denotes isoforms
R3812 T6142 T6141 _lexicallyChainedTo coding region,site within
R3813 T6174 T6173 _lexicallyChainedTo coding region,sites within

2_test

Id Subject Object Predicate Lexical cue
14611657-11689484-44684069 485-487 11689484 denotes 25