Id |
Subject |
Object |
Predicate |
Lexical cue |
T301 |
855-857 |
VBZ |
denotes |
is |
T302 |
825-835 |
VBG |
denotes |
confirming |
T303 |
836-845 |
JJ |
denotes |
olfactory |
T304 |
846-854 |
NN |
denotes |
function |
T305 |
858-867 |
JJ |
denotes |
available |
T306 |
868-871 |
IN |
denotes |
for |
T307 |
872-876 |
RB |
denotes |
very |
T308 |
877-880 |
JJ |
denotes |
few |
T309 |
891-900 |
NNS |
denotes |
receptors |
T310 |
881-890 |
JJ |
denotes |
olfactory |
T311 |
900-901 |
. |
denotes |
. |
T312 |
901-1170 |
sentence |
denotes |
We therefore screened a mouse olfactory epithelium cDNA library to obtain olfactory receptor expressed sequence tags, providing evidence of olfactory function for many additional olfactory receptors, as well as identifying gene structure and putative promoter regions. |
T313 |
902-904 |
PRP |
denotes |
We |
T314 |
915-923 |
VBD |
denotes |
screened |
T315 |
905-914 |
RB |
denotes |
therefore |
T316 |
924-925 |
DT |
denotes |
a |
T317 |
958-965 |
NN |
denotes |
library |
T318 |
926-931 |
NN |
denotes |
mouse |
T319 |
942-952 |
NN |
denotes |
epithelium |
T320 |
932-941 |
JJ |
denotes |
olfactory |
T321 |
953-957 |
NN |
denotes |
cDNA |
T322 |
966-968 |
TO |
denotes |
to |
T323 |
969-975 |
VB |
denotes |
obtain |
T324 |
976-985 |
JJ |
denotes |
olfactory |
T325 |
986-994 |
NN |
denotes |
receptor |
T326 |
995-1004 |
VBN |
denotes |
expressed |
T327 |
1014-1018 |
NNS |
denotes |
tags |
T328 |
1005-1013 |
NN |
denotes |
sequence |
T329 |
1018-1020 |
, |
denotes |
, |
T330 |
1020-1029 |
VBG |
denotes |
providing |
T331 |
1030-1038 |
NN |
denotes |
evidence |
T332 |
1039-1041 |
IN |
denotes |
of |
T333 |
1042-1051 |
JJ |
denotes |
olfactory |
T334 |
1052-1060 |
NN |
denotes |
function |
T335 |
1061-1064 |
IN |
denotes |
for |
T336 |
1065-1069 |
JJ |
denotes |
many |
T337 |
1091-1100 |
NNS |
denotes |
receptors |
T338 |
1070-1080 |
JJ |
denotes |
additional |
T339 |
1081-1090 |
JJ |
denotes |
olfactory |
T340 |
1100-1102 |
, |
denotes |
, |
T341 |
1102-1104 |
RB |
denotes |
as |
T342 |
1110-1112 |
IN |
denotes |
as |
T343 |
1105-1109 |
RB |
denotes |
well |
T344 |
1113-1124 |
VBG |
denotes |
identifying |
T345 |
1125-1129 |
NN |
denotes |
gene |
T346 |
1130-1139 |
NN |
denotes |
structure |
T347 |
1140-1143 |
CC |
denotes |
and |
T348 |
1144-1152 |
JJ |
denotes |
putative |
T349 |
1162-1169 |
NNS |
denotes |
regions |
T350 |
1153-1161 |
NN |
denotes |
promoter |
T351 |
1169-1170 |
. |
denotes |
. |
T352 |
1170-1179 |
sentence |
denotes |
Results |
T353 |
1172-1179 |
NNS |
denotes |
Results |
T354 |
1179-1266 |
sentence |
denotes |
We identified more than 1,200 odorant receptor cDNAs representing more than 400 genes. |
T355 |
1180-1182 |
PRP |
denotes |
We |
T356 |
1183-1193 |
VBD |
denotes |
identified |
T357 |
1194-1198 |
JJR |
denotes |
more |
T358 |
1204-1209 |
CD |
denotes |
1,200 |
T359 |
1199-1203 |
IN |
denotes |
than |
T360 |
1227-1232 |
NNS |
denotes |
cDNAs |
T361 |
1210-1217 |
JJ |
denotes |
odorant |
T362 |
1218-1226 |
NN |
denotes |
receptor |
T363 |
1233-1245 |
VBG |
denotes |
representing |
T364 |
1246-1250 |
JJR |
denotes |
more |
T365 |
1256-1259 |
CD |
denotes |
400 |
T366 |
1251-1255 |
IN |
denotes |
than |
T367 |
1260-1265 |
NNS |
denotes |
genes |
T368 |
1265-1266 |
. |
denotes |
. |
T369 |
1266-1468 |
sentence |
denotes |
Using real-time PCR to confirm expression level differences suggested by our screen, we find that transcript levels in the olfactory epithelium can differ between olfactory receptors by up to 300-fold. |
T370 |
1267-1272 |
VBG |
denotes |
Using |
T371 |
1355-1359 |
VBP |
denotes |
find |
T372 |
1273-1277 |
JJ |
denotes |
real |
T373 |
1278-1282 |
NN |
denotes |
time |
T374 |
1277-1278 |
HYPH |
denotes |
- |
T375 |
1283-1286 |
NN |
denotes |
PCR |
T376 |
1287-1289 |
TO |
denotes |
to |
T377 |
1290-1297 |
VB |
denotes |
confirm |
T378 |
1298-1308 |
NN |
denotes |
expression |
T379 |
1309-1314 |
NN |
denotes |
level |
T380 |
1315-1326 |
NNS |
denotes |
differences |
T381 |
1327-1336 |
VBN |
denotes |
suggested |
T382 |
1337-1339 |
IN |
denotes |
by |
T383 |
1340-1343 |
PRP$ |
denotes |
our |
T384 |
1344-1350 |
NN |
denotes |
screen |
T385 |
1350-1352 |
, |
denotes |
, |
T386 |
1352-1354 |
PRP |
denotes |
we |
T387 |
1360-1364 |
IN |
denotes |
that |
T388 |
1415-1421 |
VB |
denotes |
differ |
T389 |
1365-1375 |
NN |
denotes |
transcript |
T390 |
1376-1382 |
NNS |
denotes |
levels |
T391 |
1383-1385 |
IN |
denotes |
in |
T392 |
1386-1389 |
DT |
denotes |
the |
T393 |
1400-1410 |
NN |
denotes |
epithelium |
T394 |
1390-1399 |
JJ |
denotes |
olfactory |
T395 |
1411-1414 |
MD |
denotes |
can |
T396 |
1422-1429 |
IN |
denotes |
between |
T397 |
1430-1439 |
JJ |
denotes |
olfactory |
T398 |
1440-1449 |
NNS |
denotes |
receptors |
T399 |
1450-1452 |
IN |
denotes |
by |
T400 |
1453-1455 |
RB |
denotes |
up |
T401 |
1459-1467 |
RB |
denotes |
300-fold |
T402 |
1456-1458 |
IN |
denotes |
to |
T403 |
1467-1468 |
. |
denotes |
. |
T404 |
1468-1612 |
sentence |
denotes |
Differences for one gene pair are apparently due to both unequal numbers of expressing cells and unequal transcript levels per expressing cell. |
T405 |
1469-1480 |
NNS |
denotes |
Differences |
T406 |
1499-1502 |
VBP |
denotes |
are |
T407 |
1481-1484 |
IN |
denotes |
for |
T408 |
1485-1488 |
CD |
denotes |
one |
T409 |
1494-1498 |
NN |
denotes |
pair |
T410 |
1489-1493 |
NN |
denotes |
gene |
T411 |
1503-1513 |
RB |
denotes |
apparently |
T412 |
1514-1517 |
IN |
denotes |
due |
T413 |
1518-1520 |
IN |
denotes |
to |
T414 |
1521-1525 |
CC |
denotes |
both |
T415 |
1534-1541 |
NNS |
denotes |
numbers |
T416 |
1526-1533 |
JJ |
denotes |
unequal |
T417 |
1542-1544 |
IN |
denotes |
of |
T418 |
1545-1555 |
VBG |
denotes |
expressing |
T419 |
1556-1561 |
NNS |
denotes |
cells |
T420 |
1562-1565 |
CC |
denotes |
and |
T421 |
1566-1573 |
JJ |
denotes |
unequal |
T422 |
1585-1591 |
NNS |
denotes |
levels |
T423 |
1574-1584 |
NN |
denotes |
transcript |
T424 |
1592-1595 |
IN |
denotes |
per |
T425 |
1596-1606 |
VBG |
denotes |
expressing |
T426 |
1607-1611 |
NN |
denotes |
cell |
T427 |
1611-1612 |
. |
denotes |
. |
T428 |
1612-1764 |
sentence |
denotes |
At least two-thirds of olfactory receptors exhibit multiple transcriptional variants, with alternative isoforms of both 5' and 3' untranslated regions. |
T429 |
1613-1615 |
RB |
denotes |
At |
T430 |
1622-1625 |
CD |
denotes |
two |
T431 |
1616-1621 |
RBS |
denotes |
least |
T432 |
1656-1663 |
VBP |
denotes |
exhibit |
T433 |
1625-1626 |
HYPH |
denotes |
- |
T434 |
1626-1632 |
NNS |
denotes |
thirds |
T435 |
1633-1635 |
IN |
denotes |
of |
T436 |
1636-1645 |
JJ |
denotes |
olfactory |
T437 |
1646-1655 |
NNS |
denotes |
receptors |
T438 |
1664-1672 |
JJ |
denotes |
multiple |
T439 |
1689-1697 |
NNS |
denotes |
variants |
T440 |
1673-1688 |
JJ |
denotes |
transcriptional |
T441 |
1697-1699 |
, |
denotes |
, |
T442 |
1699-1703 |
IN |
denotes |
with |
T443 |
1704-1715 |
JJ |
denotes |
alternative |
T444 |
1716-1724 |
NNS |
denotes |
isoforms |
T445 |
1725-1727 |
IN |
denotes |
of |
T446 |
1728-1732 |
CC |
denotes |
both |
T447 |
1733-1734 |
CD |
denotes |
5 |
T448 |
1756-1763 |
NNS |
denotes |
regions |
T449 |
1734-1735 |
SYM |
denotes |
' |
T450 |
1736-1739 |
CC |
denotes |
and |
T451 |
1740-1741 |
CD |
denotes |
3 |
T452 |
1741-1742 |
SYM |
denotes |
' |
T453 |
1743-1755 |
JJ |
denotes |
untranslated |
T454 |
1763-1764 |
. |
denotes |
. |
T455 |
1764-1896 |
sentence |
denotes |
Some transcripts (5%) utilize splice sites within the coding region, contrary to the stereotyped olfactory receptor gene structure. |
T456 |
1765-1769 |
DT |
denotes |
Some |
T457 |
1770-1781 |
NNS |
denotes |
transcripts |
T458 |
1787-1794 |
VBP |
denotes |
utilize |
T459 |
1782-1783 |
-LRB- |
denotes |
( |
T460 |
1784-1785 |
NN |
denotes |
% |
T461 |
1783-1784 |
CD |
denotes |
5 |
T462 |
1785-1786 |
-RRB- |
denotes |
) |
T463 |
1795-1801 |
NN |
denotes |
splice |
T464 |
1802-1807 |
NNS |
denotes |
sites |
T465 |
1808-1814 |
IN |
denotes |
within |
T466 |
1815-1818 |
DT |
denotes |
the |
T467 |
1826-1832 |
NN |
denotes |
region |
T468 |
1819-1825 |
VBG |
denotes |
coding |
T469 |
1832-1834 |
, |
denotes |
, |
T470 |
1834-1842 |
JJ |
denotes |
contrary |
T471 |
1843-1845 |
IN |
denotes |
to |
T472 |
1846-1849 |
DT |
denotes |
the |
T473 |
1886-1895 |
NN |
denotes |
structure |
T474 |
1850-1861 |
VBN |
denotes |
stereotyped |
T475 |
1862-1871 |
JJ |
denotes |
olfactory |
T476 |
1872-1880 |
NN |
denotes |
receptor |
T477 |
1881-1885 |
NN |
denotes |
gene |
T478 |
1895-1896 |
. |
denotes |
. |
T479 |
1896-2014 |
sentence |
denotes |
Most atypical transcripts encode nonfunctional olfactory receptors, but can occasionally increase receptor diversity. |
T480 |
1897-1901 |
JJS |
denotes |
Most |
T481 |
1911-1922 |
NNS |
denotes |
transcripts |
T482 |
1902-1910 |
JJ |
denotes |
atypical |
T483 |
1923-1929 |
VBP |
denotes |
encode |
T484 |
1930-1943 |
JJ |
denotes |
nonfunctional |
T485 |
1944-1953 |
JJ |
denotes |
olfactory |
T486 |
1954-1963 |
NNS |
denotes |
receptors |
T487 |
1963-1965 |
, |
denotes |
, |
T488 |
1965-1968 |
CC |
denotes |
but |
T489 |
1969-1972 |
MD |
denotes |
can |
T490 |
1986-1994 |
VB |
denotes |
increase |
T491 |
1973-1985 |
RB |
denotes |
occasionally |
T492 |
1995-2003 |
NN |
denotes |
receptor |
T493 |
2004-2013 |
NN |
denotes |
diversity |
T494 |
2013-2014 |
. |
denotes |
. |
T495 |
2014-2027 |
sentence |
denotes |
Conclusions |
T496 |
2016-2027 |
NNS |
denotes |
Conclusions |
T497 |
2027-2134 |
sentence |
denotes |
Our cDNA collection confirms olfactory function of over one-third of the intact mouse olfactory receptors. |
T498 |
2028-2031 |
PRP$ |
denotes |
Our |
T499 |
2037-2047 |
NN |
denotes |
collection |
T500 |
2032-2036 |
NN |
denotes |
cDNA |
T501 |
2048-2056 |
VBZ |
denotes |
confirms |
T502 |
2057-2066 |
JJ |
denotes |
olfactory |
T503 |
2067-2075 |
NN |
denotes |
function |
T504 |
2076-2078 |
IN |
denotes |
of |
T505 |
2079-2083 |
IN |
denotes |
over |
T506 |
2084-2087 |
CD |
denotes |
one |
T507 |
2087-2088 |
HYPH |
denotes |
- |
T508 |
2088-2093 |
NN |
denotes |
third |
T509 |
2094-2096 |
IN |
denotes |
of |
T510 |
2097-2100 |
DT |
denotes |
the |
T511 |
2124-2133 |
NNS |
denotes |
receptors |
T512 |
2101-2107 |
JJ |
denotes |
intact |
T513 |
2108-2113 |
NN |
denotes |
mouse |
T514 |
2114-2123 |
JJ |
denotes |
olfactory |
T515 |
2133-2134 |
. |
denotes |
. |
T516 |
2134-2240 |
sentence |
denotes |
Most of these genes were previously annotated as olfactory receptors based solely on sequence similarity. |
T517 |
2135-2139 |
JJS |
denotes |
Most |
T518 |
2171-2180 |
VBN |
denotes |
annotated |
T519 |
2140-2142 |
IN |
denotes |
of |
T520 |
2143-2148 |
DT |
denotes |
these |
T521 |
2149-2154 |
NNS |
denotes |
genes |
T522 |
2155-2159 |
VBD |
denotes |
were |
T523 |
2160-2170 |
RB |
denotes |
previously |
T524 |
2181-2183 |
IN |
denotes |
as |
T525 |
2184-2193 |
JJ |
denotes |
olfactory |
T526 |
2194-2203 |
NNS |
denotes |
receptors |
T527 |
2204-2209 |
VBN |
denotes |
based |
T528 |
2210-2216 |
RB |
denotes |
solely |
T529 |
2217-2219 |
IN |
denotes |
on |
T530 |
2220-2228 |
NN |
denotes |
sequence |
T531 |
2229-2239 |
NN |
denotes |
similarity |
T532 |
2239-2240 |
. |
denotes |
. |
T533 |
2240-2407 |
sentence |
denotes |
Our finding that different olfactory receptors have different expression levels is intriguing given the one-neuron, one-gene expression regime of olfactory receptors. |
T534 |
2241-2244 |
PRP$ |
denotes |
Our |
T535 |
2245-2252 |
NN |
denotes |
finding |
T536 |
2321-2323 |
VBZ |
denotes |
is |
T537 |
2253-2257 |
IN |
denotes |
that |
T538 |
2288-2292 |
VBP |
denotes |
have |
T539 |
2258-2267 |
JJ |
denotes |
different |
T540 |
2278-2287 |
NNS |
denotes |
receptors |
T541 |
2268-2277 |
JJ |
denotes |
olfactory |
T542 |
2293-2302 |
JJ |
denotes |
different |
T543 |
2314-2320 |
NNS |
denotes |
levels |
T544 |
2303-2313 |
NN |
denotes |
expression |
T545 |
2324-2334 |
JJ |
denotes |
intriguing |
T546 |
2335-2340 |
VBN |
denotes |
given |
T547 |
2341-2344 |
DT |
denotes |
the |
T548 |
2377-2383 |
NN |
denotes |
regime |
T549 |
2345-2348 |
CD |
denotes |
one |
T550 |
2349-2355 |
NN |
denotes |
neuron |
T551 |
2348-2349 |
HYPH |
denotes |
- |
T552 |
2355-2357 |
, |
denotes |
, |
T553 |
2357-2360 |
CD |
denotes |
one |
T554 |
2361-2365 |
NN |
denotes |
gene |
T555 |
2360-2361 |
HYPH |
denotes |
- |
T556 |
2366-2376 |
NN |
denotes |
expression |
T557 |
2384-2386 |
IN |
denotes |
of |
T558 |
2387-2396 |
JJ |
denotes |
olfactory |
T559 |
2397-2406 |
NNS |
denotes |
receptors |
T560 |
2406-2407 |
. |
denotes |
. |
T561 |
2407-2664 |
sentence |
denotes |
We provide 5' untranslated region sequences and candidate promoter regions for more than 300 olfactory receptors, valuable resources for computational regulatory motif searches and for designing olfactory receptor microarrays and other experimental probes. |
T562 |
2408-2410 |
PRP |
denotes |
We |
T563 |
2411-2418 |
VBP |
denotes |
provide |
T564 |
2419-2420 |
CD |
denotes |
5 |
T565 |
2435-2441 |
NN |
denotes |
region |
T566 |
2420-2421 |
SYM |
denotes |
' |
T567 |
2422-2434 |
JJ |
denotes |
untranslated |
T568 |
2442-2451 |
NNS |
denotes |
sequences |
T569 |
2452-2455 |
CC |
denotes |
and |
T570 |
2456-2465 |
NN |
denotes |
candidate |
T571 |
2475-2482 |
NNS |
denotes |
regions |
T572 |
2466-2474 |
NN |
denotes |
promoter |
T573 |
2483-2486 |
IN |
denotes |
for |
T574 |
2487-2491 |
JJR |
denotes |
more |
T575 |
2497-2500 |
CD |
denotes |
300 |
T576 |
2492-2496 |
IN |
denotes |
than |
T577 |
2511-2520 |
NNS |
denotes |
receptors |
T578 |
2501-2510 |
JJ |
denotes |
olfactory |
T579 |
2520-2522 |
, |
denotes |
, |
T580 |
2522-2530 |
JJ |
denotes |
valuable |
T581 |
2531-2540 |
NNS |
denotes |
resources |
T582 |
2541-2544 |
IN |
denotes |
for |
T583 |
2545-2558 |
JJ |
denotes |
computational |
T584 |
2570-2575 |
NN |
denotes |
motif |
T585 |
2559-2569 |
JJ |
denotes |
regulatory |
T586 |
2576-2584 |
NNS |
denotes |
searches |
T587 |
2585-2588 |
CC |
denotes |
and |
T588 |
2589-2592 |
IN |
denotes |
for |
T589 |
2593-2602 |
VBG |
denotes |
designing |
T590 |
2603-2612 |
JJ |
denotes |
olfactory |
T591 |
2613-2621 |
NN |
denotes |
receptor |
T592 |
2622-2633 |
NNS |
denotes |
microarrays |
T593 |
2634-2637 |
CC |
denotes |
and |
T594 |
2638-2643 |
JJ |
denotes |
other |
T595 |
2657-2663 |
NNS |
denotes |
probes |
T596 |
2644-2656 |
JJ |
denotes |
experimental |
T597 |
2663-2664 |
. |
denotes |
. |
T1203 |
2677-2680 |
DT |
denotes |
The |
T1204 |
2681-2692 |
NN |
denotes |
interaction |
T1205 |
2756-2758 |
VBZ |
denotes |
is |
T1206 |
2693-2695 |
IN |
denotes |
of |
T1207 |
2696-2705 |
JJ |
denotes |
olfactory |
T1208 |
2719-2728 |
NNS |
denotes |
receptors |
T1209 |
2706-2707 |
-LRB- |
denotes |
( |
T1210 |
2707-2709 |
CC |
denotes |
or |
T1211 |
2710-2717 |
NN |
denotes |
odorant |
T1212 |
2717-2718 |
-RRB- |
denotes |
) |
T1213 |
2729-2733 |
IN |
denotes |
with |
T1214 |
2734-2739 |
PRP$ |
denotes |
their |
T1215 |
2748-2755 |
NNS |
denotes |
ligands |
T1216 |
2740-2747 |
NN |
denotes |
odorant |
T1217 |
2759-2762 |
DT |
denotes |
the |
T1218 |
2769-2773 |
NN |
denotes |
step |
T1219 |
2763-2768 |
JJ |
denotes |
first |
T1220 |
2774-2776 |
IN |
denotes |
in |
T1221 |
2777-2778 |
DT |
denotes |
a |
T1222 |
2799-2806 |
NN |
denotes |
pathway |
T1223 |
2779-2785 |
NN |
denotes |
signal |
T1224 |
2786-2798 |
NN |
denotes |
transduction |
T1225 |
2807-2811 |
WDT |
denotes |
that |
T1226 |
2812-2819 |
VBZ |
denotes |
results |
T1227 |
2820-2822 |
IN |
denotes |
in |
T1228 |
2823-2826 |
DT |
denotes |
the |
T1229 |
2827-2837 |
NN |
denotes |
perception |
T1230 |
2838-2840 |
IN |
denotes |
of |
T1231 |
2841-2846 |
NN |
denotes |
smell |
T1232 |
2846-2847 |
. |
denotes |
. |
T1233 |
2847-2987 |
sentence |
denotes |
The olfactory receptor gene family is one of the largest in the mammalian genome, comprising about 1,500 members in the mouse genome [1,2]. |
T1234 |
2848-2851 |
DT |
denotes |
The |
T1235 |
2876-2882 |
NN |
denotes |
family |
T1236 |
2852-2861 |
JJ |
denotes |
olfactory |
T1237 |
2862-2870 |
NN |
denotes |
receptor |
T1238 |
2871-2875 |
NN |
denotes |
gene |
T1239 |
2883-2885 |
VBZ |
denotes |
is |
T1240 |
2886-2889 |
CD |
denotes |
one |
T1241 |
2890-2892 |
IN |
denotes |
of |
T1242 |
2893-2896 |
DT |
denotes |
the |
T1243 |
2897-2904 |
JJS |
denotes |
largest |
T1244 |
2905-2907 |
IN |
denotes |
in |
T1245 |
2908-2911 |
DT |
denotes |
the |
T1246 |
2922-2928 |
NN |
denotes |
genome |
T1247 |
2912-2921 |
JJ |
denotes |
mammalian |
T1248 |
2928-2930 |
, |
denotes |
, |
T1249 |
2930-2940 |
VBG |
denotes |
comprising |
T1250 |
2941-2946 |
IN |
denotes |
about |
T1251 |
2947-2952 |
CD |
denotes |
1,500 |
T1252 |
2953-2960 |
NNS |
denotes |
members |
T1253 |
2961-2963 |
IN |
denotes |
in |
T1254 |
2964-2967 |
DT |
denotes |
the |
T1255 |
2974-2980 |
NN |
denotes |
genome |
T1256 |
2968-2973 |
NN |
denotes |
mouse |
T1257 |
2981-2982 |
-LRB- |
denotes |
[ |
T1258 |
2984-2985 |
CD |
denotes |
2 |
T1259 |
2982-2983 |
CD |
denotes |
1 |
T1260 |
2983-2984 |
, |
denotes |
, |
T1261 |
2985-2986 |
-RRB- |
denotes |
] |
T1262 |
2986-2987 |
. |
denotes |
. |
T1263 |
2987-3242 |
sentence |
denotes |
Olfactory receptors were originally identified in an elegant experiment based on the hypothesis that they would be seven-transmembrane-domain proteins encoded by a large, diverse gene family whose expression is restricted to the olfactory epithelium [3]. |
T1264 |
2988-2997 |
JJ |
denotes |
Olfactory |
T1265 |
2998-3007 |
NNS |
denotes |
receptors |
T1266 |
3024-3034 |
VBN |
denotes |
identified |
T1267 |
3008-3012 |
VBD |
denotes |
were |
T1268 |
3013-3023 |
RB |
denotes |
originally |
T1269 |
3035-3037 |
IN |
denotes |
in |
T1270 |
3038-3040 |
DT |
denotes |
an |
T1271 |
3049-3059 |
NN |
denotes |
experiment |
T1272 |
3041-3048 |
JJ |
denotes |
elegant |
T1273 |
3060-3065 |
VBN |
denotes |
based |
T1274 |
3066-3068 |
IN |
denotes |
on |
T1275 |
3069-3072 |
DT |
denotes |
the |
T1276 |
3073-3083 |
NN |
denotes |
hypothesis |
T1277 |
3084-3088 |
IN |
denotes |
that |
T1278 |
3100-3102 |
VB |
denotes |
be |
T1279 |
3089-3093 |
PRP |
denotes |
they |
T1280 |
3094-3099 |
MD |
denotes |
would |
T1281 |
3103-3108 |
CD |
denotes |
seven |
T1282 |
3109-3122 |
NN |
denotes |
transmembrane |
T1283 |
3108-3109 |
HYPH |
denotes |
- |
T1284 |
3123-3129 |
NN |
denotes |
domain |
T1285 |
3122-3123 |
HYPH |
denotes |
- |
T1286 |
3130-3138 |
NN |
denotes |
proteins |
T1287 |
3139-3146 |
VBN |
denotes |
encoded |
T1288 |
3147-3149 |
IN |
denotes |
by |
T1289 |
3150-3151 |
DT |
denotes |
a |
T1290 |
3172-3178 |
NN |
denotes |
family |
T1291 |
3152-3157 |
JJ |
denotes |
large |
T1292 |
3157-3159 |
, |
denotes |
, |
T1293 |
3159-3166 |
JJ |
denotes |
diverse |
T1294 |
3167-3171 |
NN |
denotes |
gene |
T1295 |
3179-3184 |
WP$ |
denotes |
whose |
T1296 |
3185-3195 |
NN |
denotes |
expression |
T1297 |
3199-3209 |
VBN |
denotes |
restricted |
T1298 |
3196-3198 |
VBZ |
denotes |
is |
T1299 |
3210-3212 |
IN |
denotes |
to |
T1300 |
3213-3216 |
DT |
denotes |
the |
T1301 |
3227-3237 |
NN |
denotes |
epithelium |
T1302 |
3217-3226 |
JJ |
denotes |
olfactory |
T1303 |
3238-3239 |
-LRB- |
denotes |
[ |
T1304 |
3239-3240 |
CD |
denotes |
3 |
T1305 |
3240-3241 |
-RRB- |
denotes |
] |
T1306 |
3241-3242 |
. |
denotes |
. |
T1307 |
3242-3425 |
sentence |
denotes |
Subsequent studies have shown that some of these receptors do indeed respond to odorants and can confer that responsivity when expressed in heterologous cell types (for example [4]). |
T1308 |
3243-3253 |
JJ |
denotes |
Subsequent |
T1309 |
3254-3261 |
NNS |
denotes |
studies |
T1310 |
3267-3272 |
VBN |
denotes |
shown |
T1311 |
3262-3266 |
VBP |
denotes |
have |
T1312 |
3273-3277 |
IN |
denotes |
that |
T1313 |
3312-3319 |
VB |
denotes |
respond |
T1314 |
3278-3282 |
DT |
denotes |
some |
T1315 |
3283-3285 |
IN |
denotes |
of |
T1316 |
3286-3291 |
DT |
denotes |
these |
T1317 |
3292-3301 |
NNS |
denotes |
receptors |
T1318 |
3302-3304 |
VBP |
denotes |
do |
T1319 |
3305-3311 |
RB |
denotes |
indeed |
T1320 |
3320-3322 |
IN |
denotes |
to |
T1321 |
3323-3331 |
NNS |
denotes |
odorants |
T1322 |
3332-3335 |
CC |
denotes |
and |
T1323 |
3336-3339 |
MD |
denotes |
can |
T1324 |
3340-3346 |
VB |
denotes |
confer |
T1325 |
3347-3351 |
DT |
denotes |
that |
T1326 |
3352-3364 |
NN |
denotes |
responsivity |
T1327 |
3365-3369 |
WRB |
denotes |
when |
T1328 |
3370-3379 |
VBN |
denotes |
expressed |
T1329 |
3380-3382 |
IN |
denotes |
in |
T1330 |
3383-3395 |
JJ |
denotes |
heterologous |
T1331 |
3401-3406 |
NNS |
denotes |
types |
T1332 |
3396-3400 |
NN |
denotes |
cell |
T1333 |
3407-3408 |
-LRB- |
denotes |
( |
T1334 |
3408-3411 |
IN |
denotes |
for |
T1335 |
3421-3422 |
CD |
denotes |
4 |
T1336 |
3412-3419 |
NN |
denotes |
example |
T1337 |
3420-3421 |
-LRB- |
denotes |
[ |
T1338 |
3422-3423 |
-RRB- |
denotes |
] |
T1339 |
3423-3424 |
-RRB- |
denotes |
) |
T1340 |
3424-3425 |
. |
denotes |
. |
T1341 |
3425-3557 |
sentence |
denotes |
Recent computational investigations have provided the almost complete human [5,6] and mouse [1,2] olfactory receptor-gene catalogs. |
T1342 |
3426-3432 |
JJ |
denotes |
Recent |
T1343 |
3447-3461 |
NNS |
denotes |
investigations |
T1344 |
3433-3446 |
JJ |
denotes |
computational |
T1345 |
3467-3475 |
VBN |
denotes |
provided |
T1346 |
3462-3466 |
VBP |
denotes |
have |
T1347 |
3476-3479 |
DT |
denotes |
the |
T1348 |
3548-3556 |
NNS |
denotes |
catalogs |
T1349 |
3480-3486 |
RB |
denotes |
almost |
T1350 |
3487-3495 |
JJ |
denotes |
complete |
T1351 |
3496-3501 |
JJ |
denotes |
human |
T1352 |
3505-3506 |
CD |
denotes |
6 |
T1353 |
3502-3503 |
-LRB- |
denotes |
[ |
T1354 |
3503-3504 |
CD |
denotes |
5 |
T1355 |
3504-3505 |
, |
denotes |
, |
T1356 |
3543-3547 |
NN |
denotes |
gene |
T1357 |
3506-3507 |
-RRB- |
denotes |
] |
T1358 |
3508-3511 |
CC |
denotes |
and |
T1359 |
3512-3517 |
NN |
denotes |
mouse |
T1360 |
3521-3522 |
CD |
denotes |
2 |
T1361 |
3518-3519 |
-LRB- |
denotes |
[ |
T1362 |
3519-3520 |
CD |
denotes |
1 |
T1363 |
3520-3521 |
, |
denotes |
, |
T1364 |
3522-3523 |
-RRB- |
denotes |
] |
T1365 |
3524-3533 |
JJ |
denotes |
olfactory |
T1366 |
3534-3542 |
NN |
denotes |
receptor |
T1367 |
3542-3543 |
HYPH |
denotes |
- |
T1368 |
3556-3557 |
. |
denotes |
. |
T1369 |
3557-3854 |
sentence |
denotes |
However, the assignment of most of these genes as olfactory receptors is based solely on similarity to one of a relatively small number of experimentally confirmed mouse olfactory receptors or, worse, on similarity to a gene that in turn was defined as an olfactory receptor solely by similarity. |
T1370 |
3558-3565 |
RB |
denotes |
However |
T1371 |
3631-3636 |
VBN |
denotes |
based |
T1372 |
3565-3567 |
, |
denotes |
, |
T1373 |
3567-3570 |
DT |
denotes |
the |
T1374 |
3571-3581 |
NN |
denotes |
assignment |
T1375 |
3582-3584 |
IN |
denotes |
of |
T1376 |
3585-3589 |
JJS |
denotes |
most |
T1377 |
3590-3592 |
IN |
denotes |
of |
T1378 |
3593-3598 |
DT |
denotes |
these |
T1379 |
3599-3604 |
NNS |
denotes |
genes |
T1380 |
3605-3607 |
IN |
denotes |
as |
T1381 |
3608-3617 |
JJ |
denotes |
olfactory |
T1382 |
3618-3627 |
NNS |
denotes |
receptors |
T1383 |
3628-3630 |
VBZ |
denotes |
is |
T1384 |
3637-3643 |
RB |
denotes |
solely |
T1385 |
3644-3646 |
IN |
denotes |
on |
T1386 |
3647-3657 |
NN |
denotes |
similarity |
T1387 |
3658-3660 |
IN |
denotes |
to |
T1388 |
3661-3664 |
CD |
denotes |
one |
T1389 |
3665-3667 |
IN |
denotes |
of |
T1390 |
3668-3669 |
DT |
denotes |
a |
T1391 |
3687-3693 |
NN |
denotes |
number |
T1392 |
3670-3680 |
RB |
denotes |
relatively |
T1393 |
3681-3686 |
JJ |
denotes |
small |
T1394 |
3694-3696 |
IN |
denotes |
of |
T1395 |
3697-3711 |
RB |
denotes |
experimentally |
T1396 |
3712-3721 |
VBN |
denotes |
confirmed |
T1397 |
3738-3747 |
NNS |
denotes |
receptors |
T1398 |
3722-3727 |
NN |
denotes |
mouse |
T1399 |
3728-3737 |
JJ |
denotes |
olfactory |
T1400 |
3748-3750 |
CC |
denotes |
or |
T1401 |
3750-3752 |
, |
denotes |
, |
T1402 |
3752-3757 |
RBR |
denotes |
worse |
T1403 |
3759-3761 |
IN |
denotes |
on |
T1404 |
3757-3759 |
, |
denotes |
, |
T1405 |
3762-3772 |
NN |
denotes |
similarity |
T1406 |
3773-3775 |
IN |
denotes |
to |
T1407 |
3776-3777 |
DT |
denotes |
a |
T1408 |
3778-3782 |
NN |
denotes |
gene |
T1409 |
3783-3787 |
WDT |
denotes |
that |
T1410 |
3800-3807 |
VBN |
denotes |
defined |
T1411 |
3788-3790 |
IN |
denotes |
in |
T1412 |
3791-3795 |
NN |
denotes |
turn |
T1413 |
3796-3799 |
VBD |
denotes |
was |
T1414 |
3808-3810 |
IN |
denotes |
as |
T1415 |
3811-3813 |
DT |
denotes |
an |
T1416 |
3824-3832 |
NN |
denotes |
receptor |
T1417 |
3814-3823 |
JJ |
denotes |
olfactory |
T1418 |
3833-3839 |
RB |
denotes |
solely |
T1419 |
3840-3842 |
IN |
denotes |
by |
T1420 |
3843-3853 |
NN |
denotes |
similarity |
T1421 |
3853-3854 |
. |
denotes |
. |
T1422 |
3854-4157 |
sentence |
denotes |
While similarity-based genome annotation is a good initial method to identify genes and predict their function, in some cases it can be misleading, as genes of similar sequence can carry out different functions and be expressed in different tissues (for example, the sugar transporter gene family [7]). |
T1423 |
3855-3860 |
IN |
denotes |
While |
T1424 |
3896-3898 |
VBZ |
denotes |
is |
T1425 |
3861-3871 |
NN |
denotes |
similarity |
T1426 |
3872-3877 |
VBN |
denotes |
based |
T1427 |
3871-3872 |
HYPH |
denotes |
- |
T1428 |
3885-3895 |
NN |
denotes |
annotation |
T1429 |
3878-3884 |
NN |
denotes |
genome |
T1430 |
3988-3990 |
VB |
denotes |
be |
T1431 |
3899-3900 |
DT |
denotes |
a |
T1432 |
3914-3920 |
NN |
denotes |
method |
T1433 |
3901-3905 |
JJ |
denotes |
good |
T1434 |
3906-3913 |
JJ |
denotes |
initial |
T1435 |
3921-3923 |
TO |
denotes |
to |
T1436 |
3924-3932 |
VB |
denotes |
identify |
T1437 |
3933-3938 |
NNS |
denotes |
genes |
T1438 |
3939-3942 |
CC |
denotes |
and |
T1439 |
3943-3950 |
VBP |
denotes |
predict |
T1440 |
3951-3956 |
PRP$ |
denotes |
their |
T1441 |
3957-3965 |
NN |
denotes |
function |
T1442 |
3965-3967 |
, |
denotes |
, |
T1443 |
3967-3969 |
IN |
denotes |
in |
T1444 |
3970-3974 |
DT |
denotes |
some |
T1445 |
3975-3980 |
NNS |
denotes |
cases |
T1446 |
3981-3983 |
PRP |
denotes |
it |
T1447 |
3984-3987 |
MD |
denotes |
can |
T1448 |
3991-4001 |
JJ |
denotes |
misleading |
T1449 |
4001-4003 |
, |
denotes |
, |
T1450 |
4003-4005 |
IN |
denotes |
as |
T1451 |
4036-4041 |
VB |
denotes |
carry |
T1452 |
4006-4011 |
NNS |
denotes |
genes |
T1453 |
4012-4014 |
IN |
denotes |
of |
T1454 |
4015-4022 |
JJ |
denotes |
similar |
T1455 |
4023-4031 |
NN |
denotes |
sequence |
T1456 |
4032-4035 |
MD |
denotes |
can |
T1457 |
4042-4045 |
RP |
denotes |
out |
T1458 |
4046-4055 |
JJ |
denotes |
different |
T1459 |
4056-4065 |
NNS |
denotes |
functions |
T1460 |
4066-4069 |
CC |
denotes |
and |
T1461 |
4070-4072 |
VB |
denotes |
be |
T1462 |
4073-4082 |
VBN |
denotes |
expressed |
T1463 |
4083-4085 |
IN |
denotes |
in |
T1464 |
4086-4095 |
JJ |
denotes |
different |
T1465 |
4096-4103 |
NNS |
denotes |
tissues |
T1466 |
4104-4105 |
-LRB- |
denotes |
( |
T1467 |
4105-4108 |
IN |
denotes |
for |
T1468 |
4145-4151 |
NN |
denotes |
family |
T1469 |
4109-4116 |
NN |
denotes |
example |
T1470 |
4116-4118 |
, |
denotes |
, |
T1471 |
4118-4121 |
DT |
denotes |
the |
T1472 |
4122-4127 |
NN |
denotes |
sugar |
T1473 |
4128-4139 |
NN |
denotes |
transporter |
T1474 |
4140-4144 |
NN |
denotes |
gene |
T1475 |
4152-4153 |
-LRB- |
denotes |
[ |
T1476 |
4153-4154 |
CD |
denotes |
7 |
T1477 |
4154-4155 |
-RRB- |
denotes |
] |
T1478 |
4155-4156 |
-RRB- |
denotes |
) |
T1479 |
4156-4157 |
. |
denotes |
. |
T1480 |
4157-4380 |
sentence |
denotes |
A small subset of olfactory receptors appears to be expressed in non-olfactory tissues, principally the testis [8], but also taste tissues [9], prostate [10], erythroid cells [11], notochord [12] and perhaps other tissues. |
T1481 |
4158-4159 |
DT |
denotes |
A |
T1482 |
4166-4172 |
NN |
denotes |
subset |
T1483 |
4160-4165 |
JJ |
denotes |
small |
T1484 |
4196-4203 |
VBZ |
denotes |
appears |
T1485 |
4173-4175 |
IN |
denotes |
of |
T1486 |
4176-4185 |
JJ |
denotes |
olfactory |
T1487 |
4186-4195 |
NNS |
denotes |
receptors |
T1488 |
4204-4206 |
TO |
denotes |
to |
T1489 |
4210-4219 |
VBN |
denotes |
expressed |
T1490 |
4207-4209 |
VB |
denotes |
be |
T1491 |
4220-4222 |
IN |
denotes |
in |
T1492 |
4223-4236 |
JJ |
denotes |
non-olfactory |
T1493 |
4237-4244 |
NNS |
denotes |
tissues |
T1494 |
4244-4246 |
, |
denotes |
, |
T1495 |
4246-4257 |
RB |
denotes |
principally |
T1496 |
4262-4268 |
NN |
denotes |
testis |
T1497 |
4258-4261 |
DT |
denotes |
the |
T1498 |
4269-4270 |
-LRB- |
denotes |
[ |
T1499 |
4270-4271 |
CD |
denotes |
8 |
T1500 |
4271-4272 |
-RRB- |
denotes |
] |
T1501 |
4272-4274 |
, |
denotes |
, |
T1502 |
4274-4277 |
CC |
denotes |
but |
T1503 |
4278-4282 |
RB |
denotes |
also |
T1504 |
4283-4288 |
NN |
denotes |
taste |
T1505 |
4289-4296 |
NNS |
denotes |
tissues |
T1506 |
4297-4298 |
-LRB- |
denotes |
[ |
T1507 |
4298-4299 |
CD |
denotes |
9 |
T1508 |
4299-4300 |
-RRB- |
denotes |
] |
T1509 |
4300-4302 |
, |
denotes |
, |
T1510 |
4302-4310 |
NN |
denotes |
prostate |
T1511 |
4311-4312 |
-LRB- |
denotes |
[ |
T1512 |
4312-4314 |
CD |
denotes |
10 |
T1513 |
4314-4315 |
-RRB- |
denotes |
] |
T1514 |
4315-4317 |
, |
denotes |
, |
T1515 |
4317-4326 |
JJ |
denotes |
erythroid |
T1516 |
4327-4332 |
NNS |
denotes |
cells |
T1517 |
4333-4334 |
-LRB- |
denotes |
[ |
T1518 |
4334-4336 |
CD |
denotes |
11 |
T1519 |
4336-4337 |
-RRB- |
denotes |
] |
T1520 |
4337-4339 |
, |
denotes |
, |
T1521 |
4339-4348 |
NN |
denotes |
notochord |
T1522 |
4349-4350 |
-LRB- |
denotes |
[ |
T1523 |
4350-4352 |
CD |
denotes |
12 |
T1524 |
4352-4353 |
-RRB- |
denotes |
] |
T1525 |
4354-4357 |
CC |
denotes |
and |
T1526 |
4358-4365 |
RB |
denotes |
perhaps |
T1527 |
4372-4379 |
NNS |
denotes |
tissues |
T1528 |
4366-4371 |
JJ |
denotes |
other |
T1529 |
4379-4380 |
. |
denotes |
. |
T1530 |
4380-4526 |
sentence |
denotes |
Expression in the testis has led some investigators to suggest that a subset of olfactory receptors may function as spermatid chemoreceptors [8]. |
T1531 |
4381-4391 |
NN |
denotes |
Expression |
T1532 |
4410-4413 |
VBN |
denotes |
led |
T1533 |
4392-4394 |
IN |
denotes |
in |
T1534 |
4395-4398 |
DT |
denotes |
the |
T1535 |
4399-4405 |
NN |
denotes |
testis |
T1536 |
4406-4409 |
VBZ |
denotes |
has |
T1537 |
4414-4418 |
DT |
denotes |
some |
T1538 |
4419-4432 |
NNS |
denotes |
investigators |
T1539 |
4433-4435 |
TO |
denotes |
to |
T1540 |
4436-4443 |
VB |
denotes |
suggest |
T1541 |
4444-4448 |
IN |
denotes |
that |
T1542 |
4485-4493 |
VB |
denotes |
function |
T1543 |
4449-4450 |
DT |
denotes |
a |
T1544 |
4451-4457 |
NN |
denotes |
subset |
T1545 |
4458-4460 |
IN |
denotes |
of |
T1546 |
4461-4470 |
JJ |
denotes |
olfactory |
T1547 |
4471-4480 |
NNS |
denotes |
receptors |
T1548 |
4481-4484 |
MD |
denotes |
may |
T1549 |
4494-4496 |
IN |
denotes |
as |
T1550 |
4497-4506 |
JJ |
denotes |
spermatid |
T1551 |
4507-4521 |
NNS |
denotes |
chemoreceptors |
T1552 |
4522-4523 |
-LRB- |
denotes |
[ |
T1553 |
4523-4524 |
CD |
denotes |
8 |
T1554 |
4524-4525 |
-RRB- |
denotes |
] |
T1555 |
4525-4526 |
. |
denotes |
. |
T1556 |
4526-4654 |
sentence |
denotes |
Recent studies of one human testis-expressed olfactory receptor indicate that it does indeed function in sperm chemotaxis [13]. |
T1557 |
4527-4533 |
JJ |
denotes |
Recent |
T1558 |
4534-4541 |
NNS |
denotes |
studies |
T1559 |
4591-4599 |
VBP |
denotes |
indicate |
T1560 |
4542-4544 |
IN |
denotes |
of |
T1561 |
4545-4548 |
CD |
denotes |
one |
T1562 |
4582-4590 |
NN |
denotes |
receptor |
T1563 |
4549-4554 |
JJ |
denotes |
human |
T1564 |
4555-4561 |
NN |
denotes |
testis |
T1565 |
4562-4571 |
VBN |
denotes |
expressed |
T1566 |
4561-4562 |
HYPH |
denotes |
- |
T1567 |
4572-4581 |
JJ |
denotes |
olfactory |
T1568 |
4600-4604 |
IN |
denotes |
that |
T1569 |
4620-4628 |
VB |
denotes |
function |
T1570 |
4605-4607 |
PRP |
denotes |
it |
T1571 |
4608-4612 |
VBZ |
denotes |
does |
T1572 |
4613-4619 |
RB |
denotes |
indeed |
T1573 |
4629-4631 |
IN |
denotes |
in |
T1574 |
4632-4637 |
NN |
denotes |
sperm |
T1575 |
4638-4648 |
NN |
denotes |
chemotaxis |
T1576 |
4649-4650 |
-LRB- |
denotes |
[ |
T1577 |
4650-4652 |
CD |
denotes |
13 |
T1578 |
4652-4653 |
-RRB- |
denotes |
] |
T1579 |
4653-4654 |
. |
denotes |
. |
T1580 |
4654-4956 |
sentence |
denotes |
Due to the paucity of experimental evidence of the olfactory function of most genes in the family and suggestions of extra-olfactory roles, we embarked on an olfactory receptor expressed sequence tag (EST) project to confirm olfactory epithelial expression of hundreds of mouse odorant receptor genes. |
T1581 |
4655-4658 |
IN |
denotes |
Due |
T1582 |
4798-4806 |
VBD |
denotes |
embarked |
T1583 |
4659-4661 |
IN |
denotes |
to |
T1584 |
4662-4665 |
DT |
denotes |
the |
T1585 |
4666-4673 |
NN |
denotes |
paucity |
T1586 |
4674-4676 |
IN |
denotes |
of |
T1587 |
4677-4689 |
JJ |
denotes |
experimental |
T1588 |
4690-4698 |
NN |
denotes |
evidence |
T1589 |
4699-4701 |
IN |
denotes |
of |
T1590 |
4702-4705 |
DT |
denotes |
the |
T1591 |
4716-4724 |
NN |
denotes |
function |
T1592 |
4706-4715 |
JJ |
denotes |
olfactory |
T1593 |
4725-4727 |
IN |
denotes |
of |
T1594 |
4728-4732 |
JJS |
denotes |
most |
T1595 |
4733-4738 |
NNS |
denotes |
genes |
T1596 |
4739-4741 |
IN |
denotes |
in |
T1597 |
4742-4745 |
DT |
denotes |
the |
T1598 |
4746-4752 |
NN |
denotes |
family |
T1599 |
4753-4756 |
CC |
denotes |
and |
T1600 |
4757-4768 |
NNS |
denotes |
suggestions |
T1601 |
4769-4771 |
IN |
denotes |
of |
T1602 |
4772-4787 |
JJ |
denotes |
extra-olfactory |
T1603 |
4788-4793 |
NNS |
denotes |
roles |
T1604 |
4793-4795 |
, |
denotes |
, |
T1605 |
4795-4797 |
PRP |
denotes |
we |
T1606 |
4807-4809 |
IN |
denotes |
on |
T1607 |
4810-4812 |
DT |
denotes |
an |
T1608 |
4861-4868 |
NN |
denotes |
project |
T1609 |
4813-4822 |
JJ |
denotes |
olfactory |
T1610 |
4823-4831 |
NN |
denotes |
receptor |
T1611 |
4832-4841 |
VBN |
denotes |
expressed |
T1612 |
4851-4854 |
NN |
denotes |
tag |
T1613 |
4842-4850 |
NN |
denotes |
sequence |
T1614 |
4855-4856 |
-LRB- |
denotes |
( |
T1615 |
4856-4859 |
NN |
denotes |
EST |
T1616 |
4859-4860 |
-RRB- |
denotes |
) |
T1617 |
4869-4871 |
TO |
denotes |
to |
T1618 |
4872-4879 |
VB |
denotes |
confirm |
T1619 |
4880-4889 |
JJ |
denotes |
olfactory |
T1620 |
4901-4911 |
NN |
denotes |
expression |
T1621 |
4890-4900 |
JJ |
denotes |
epithelial |
T1622 |
4912-4914 |
IN |
denotes |
of |
T1623 |
4915-4923 |
NNS |
denotes |
hundreds |
T1624 |
4924-4926 |
IN |
denotes |
of |
T1625 |
4927-4932 |
NN |
denotes |
mouse |
T1626 |
4950-4955 |
NNS |
denotes |
genes |
T1627 |
4933-4940 |
NN |
denotes |
odorant |
T1628 |
4941-4949 |
NN |
denotes |
receptor |
T1629 |
4955-4956 |
. |
denotes |
. |
T1630 |
4956-5064 |
sentence |
denotes |
Within the olfactory epithelium, individual olfactory receptor genes show an intriguing expression pattern. |
T1631 |
4957-4963 |
IN |
denotes |
Within |
T1632 |
5026-5030 |
VBP |
denotes |
show |
T1633 |
4964-4967 |
DT |
denotes |
the |
T1634 |
4978-4988 |
NN |
denotes |
epithelium |
T1635 |
4968-4977 |
JJ |
denotes |
olfactory |
T1636 |
4988-4990 |
, |
denotes |
, |
T1637 |
4990-5000 |
JJ |
denotes |
individual |
T1638 |
5020-5025 |
NNS |
denotes |
genes |
T1639 |
5001-5010 |
JJ |
denotes |
olfactory |
T1640 |
5011-5019 |
NN |
denotes |
receptor |
T1641 |
5031-5033 |
DT |
denotes |
an |
T1642 |
5056-5063 |
NN |
denotes |
pattern |
T1643 |
5034-5044 |
JJ |
denotes |
intriguing |
T1644 |
5045-5055 |
NN |
denotes |
expression |
T1645 |
5063-5064 |
. |
denotes |
. |
T1646 |
5064-5170 |
sentence |
denotes |
Each olfactory receptor is expressed in a subset of cells in one of four zones of the epithelium [14,15]. |
T1647 |
5065-5069 |
DT |
denotes |
Each |
T1648 |
5080-5088 |
NN |
denotes |
receptor |
T1649 |
5070-5079 |
JJ |
denotes |
olfactory |
T1650 |
5092-5101 |
VBN |
denotes |
expressed |
T1651 |
5089-5091 |
VBZ |
denotes |
is |
T1652 |
5102-5104 |
IN |
denotes |
in |
T1653 |
5105-5106 |
DT |
denotes |
a |
T1654 |
5107-5113 |
NN |
denotes |
subset |
T1655 |
5114-5116 |
IN |
denotes |
of |
T1656 |
5117-5122 |
NNS |
denotes |
cells |
T1657 |
5123-5125 |
IN |
denotes |
in |
T1658 |
5126-5129 |
CD |
denotes |
one |
T1659 |
5130-5132 |
IN |
denotes |
of |
T1660 |
5133-5137 |
CD |
denotes |
four |
T1661 |
5138-5143 |
NNS |
denotes |
zones |
T1662 |
5144-5146 |
IN |
denotes |
of |
T1663 |
5147-5150 |
DT |
denotes |
the |
T1664 |
5151-5161 |
NN |
denotes |
epithelium |
T1665 |
5162-5163 |
-LRB- |
denotes |
[ |
T1666 |
5166-5168 |
CD |
denotes |
15 |
T1667 |
5163-5165 |
CD |
denotes |
14 |
T1668 |
5165-5166 |
, |
denotes |
, |
T1669 |
5168-5169 |
-RRB- |
denotes |
] |
T1670 |
5169-5170 |
. |
denotes |
. |
T1671 |
5170-5357 |
sentence |
denotes |
Furthermore, each olfactory neuron expresses only one allele [16] of a single olfactory receptor gene [17,18], and the remaining approximately 1,499 genes are transcriptionally inactive. |
T1672 |
5171-5182 |
RB |
denotes |
Furthermore |
T1673 |
5206-5215 |
VBZ |
denotes |
expresses |
T1674 |
5182-5184 |
, |
denotes |
, |
T1675 |
5184-5188 |
DT |
denotes |
each |
T1676 |
5199-5205 |
NN |
denotes |
neuron |
T1677 |
5189-5198 |
JJ |
denotes |
olfactory |
T1678 |
5216-5220 |
RB |
denotes |
only |
T1679 |
5225-5231 |
NN |
denotes |
allele |
T1680 |
5221-5224 |
CD |
denotes |
one |
T1681 |
5232-5233 |
-LRB- |
denotes |
[ |
T1682 |
5233-5235 |
CD |
denotes |
16 |
T1683 |
5235-5236 |
-RRB- |
denotes |
] |
T1684 |
5237-5239 |
IN |
denotes |
of |
T1685 |
5240-5241 |
DT |
denotes |
a |
T1686 |
5268-5272 |
NN |
denotes |
gene |
T1687 |
5242-5248 |
JJ |
denotes |
single |
T1688 |
5249-5258 |
JJ |
denotes |
olfactory |
T1689 |
5259-5267 |
NN |
denotes |
receptor |
T1690 |
5273-5274 |
-LRB- |
denotes |
[ |
T1691 |
5277-5279 |
CD |
denotes |
18 |
T1692 |
5274-5276 |
CD |
denotes |
17 |
T1693 |
5276-5277 |
, |
denotes |
, |
T1694 |
5279-5280 |
-RRB- |
denotes |
] |
T1695 |
5280-5282 |
, |
denotes |
, |
T1696 |
5282-5285 |
CC |
denotes |
and |
T1697 |
5286-5289 |
DT |
denotes |
the |
T1698 |
5320-5325 |
NNS |
denotes |
genes |
T1699 |
5290-5299 |
NN |
denotes |
remaining |
T1700 |
5300-5313 |
RB |
denotes |
approximately |
T1701 |
5314-5319 |
CD |
denotes |
1,499 |
T1702 |
5326-5329 |
VBP |
denotes |
are |
T1703 |
5330-5347 |
RB |
denotes |
transcriptionally |
T1704 |
5348-5356 |
JJ |
denotes |
inactive |
T1705 |
5356-5357 |
. |
denotes |
. |
T1706 |
5357-5465 |
sentence |
denotes |
While the mechanism ensuring singular expression is unknown, many hypotheses have been proposed [14,16,19]. |
T1707 |
5358-5363 |
IN |
denotes |
While |
T1708 |
5407-5409 |
VBZ |
denotes |
is |
T1709 |
5364-5367 |
DT |
denotes |
the |
T1710 |
5368-5377 |
NN |
denotes |
mechanism |
T1711 |
5378-5386 |
VBG |
denotes |
ensuring |
T1712 |
5387-5395 |
JJ |
denotes |
singular |
T1713 |
5396-5406 |
NN |
denotes |
expression |
T1714 |
5445-5453 |
VBN |
denotes |
proposed |
T1715 |
5410-5417 |
JJ |
denotes |
unknown |
T1716 |
5417-5419 |
, |
denotes |
, |
T1717 |
5419-5423 |
JJ |
denotes |
many |
T1718 |
5424-5434 |
NNS |
denotes |
hypotheses |
T1719 |
5435-5439 |
VBP |
denotes |
have |
T1720 |
5440-5444 |
VBN |
denotes |
been |
T1721 |
5454-5455 |
-LRB- |
denotes |
[ |
T1722 |
5461-5463 |
CD |
denotes |
19 |
T1723 |
5455-5457 |
CD |
denotes |
14 |
T1724 |
5457-5458 |
, |
denotes |
, |
T1725 |
5458-5460 |
CD |
denotes |
16 |
T1726 |
5460-5461 |
, |
denotes |
, |
T1727 |
5463-5464 |
-RRB- |
denotes |
] |
T1728 |
5464-5465 |
. |
denotes |
. |
T1729 |
5465-5694 |
sentence |
denotes |
In one model, somatic DNA recombination would bring one olfactory receptor gene into a transcriptionally active genomic configuration, as observed for the yeast mating type locus [20] and the mammalian immunoglobulin genes [21]. |
T1730 |
5466-5468 |
IN |
denotes |
In |
T1731 |
5512-5517 |
VB |
denotes |
bring |
T1732 |
5469-5472 |
CD |
denotes |
one |
T1733 |
5473-5478 |
NN |
denotes |
model |
T1734 |
5478-5480 |
, |
denotes |
, |
T1735 |
5480-5487 |
JJ |
denotes |
somatic |
T1736 |
5492-5505 |
NN |
denotes |
recombination |
T1737 |
5488-5491 |
NN |
denotes |
DNA |
T1738 |
5506-5511 |
MD |
denotes |
would |
T1739 |
5518-5521 |
CD |
denotes |
one |
T1740 |
5541-5545 |
NN |
denotes |
gene |
T1741 |
5522-5531 |
JJ |
denotes |
olfactory |
T1742 |
5532-5540 |
NN |
denotes |
receptor |
T1743 |
5546-5550 |
IN |
denotes |
into |
T1744 |
5551-5552 |
DT |
denotes |
a |
T1745 |
5586-5599 |
NN |
denotes |
configuration |
T1746 |
5553-5570 |
RB |
denotes |
transcriptionally |
T1747 |
5571-5577 |
JJ |
denotes |
active |
T1748 |
5578-5585 |
JJ |
denotes |
genomic |
T1749 |
5599-5601 |
, |
denotes |
, |
T1750 |
5601-5603 |
IN |
denotes |
as |
T1751 |
5604-5612 |
VBN |
denotes |
observed |
T1752 |
5613-5616 |
IN |
denotes |
for |
T1753 |
5617-5620 |
DT |
denotes |
the |
T1754 |
5639-5644 |
NN |
denotes |
locus |
T1755 |
5621-5626 |
NN |
denotes |
yeast |
T1756 |
5627-5633 |
NN |
denotes |
mating |
T1757 |
5634-5638 |
NN |
denotes |
type |
T1758 |
5645-5646 |
-LRB- |
denotes |
[ |
T1759 |
5646-5648 |
CD |
denotes |
20 |
T1760 |
5648-5649 |
-RRB- |
denotes |
] |
T1761 |
5650-5653 |
CC |
denotes |
and |
T1762 |
5654-5657 |
DT |
denotes |
the |
T1763 |
5683-5688 |
NNS |
denotes |
genes |
T1764 |
5658-5667 |
JJ |
denotes |
mammalian |
T1765 |
5668-5682 |
NN |
denotes |
immunoglobulin |
T1766 |
5689-5690 |
-LRB- |
denotes |
[ |
T1767 |
5690-5692 |
CD |
denotes |
21 |
T1768 |
5692-5693 |
-RRB- |
denotes |
] |
T1769 |
5693-5694 |
. |
denotes |
. |
T1770 |
5694-5812 |
sentence |
denotes |
Alternatively, a second model invokes a combinatorial code of transcription factor binding sites unique to each gene. |
T1771 |
5695-5708 |
RB |
denotes |
Alternatively |
T1772 |
5725-5732 |
VBZ |
denotes |
invokes |
T1773 |
5708-5710 |
, |
denotes |
, |
T1774 |
5710-5711 |
DT |
denotes |
a |
T1775 |
5719-5724 |
NN |
denotes |
model |
T1776 |
5712-5718 |
JJ |
denotes |
second |
T1777 |
5733-5734 |
DT |
denotes |
a |
T1778 |
5749-5753 |
NN |
denotes |
code |
T1779 |
5735-5748 |
JJ |
denotes |
combinatorial |
T1780 |
5754-5756 |
IN |
denotes |
of |
T1781 |
5757-5770 |
NN |
denotes |
transcription |
T1782 |
5771-5777 |
NN |
denotes |
factor |
T1783 |
5786-5791 |
NNS |
denotes |
sites |
T1784 |
5778-5785 |
NN |
denotes |
binding |
T1785 |
5792-5798 |
JJ |
denotes |
unique |
T1786 |
5799-5801 |
IN |
denotes |
to |
T1787 |
5802-5806 |
DT |
denotes |
each |
T1788 |
5807-5811 |
NN |
denotes |
gene |
T1789 |
5811-5812 |
. |
denotes |
. |
T1790 |
5812-5950 |
sentence |
denotes |
This is unlikely, however, as even olfactory receptor transgenes with identical upstream regions are expressed in different neurons [18]. |
T1791 |
5813-5817 |
DT |
denotes |
This |
T1792 |
5818-5820 |
VBZ |
denotes |
is |
T1793 |
5821-5829 |
JJ |
denotes |
unlikely |
T1794 |
5829-5831 |
, |
denotes |
, |
T1795 |
5831-5838 |
RB |
denotes |
however |
T1796 |
5838-5840 |
, |
denotes |
, |
T1797 |
5840-5842 |
IN |
denotes |
as |
T1798 |
5914-5923 |
VBN |
denotes |
expressed |
T1799 |
5843-5847 |
RB |
denotes |
even |
T1800 |
5867-5877 |
NNS |
denotes |
transgenes |
T1801 |
5848-5857 |
JJ |
denotes |
olfactory |
T1802 |
5858-5866 |
NN |
denotes |
receptor |
T1803 |
5878-5882 |
IN |
denotes |
with |
T1804 |
5883-5892 |
JJ |
denotes |
identical |
T1805 |
5902-5909 |
NNS |
denotes |
regions |
T1806 |
5893-5901 |
JJ |
denotes |
upstream |
T1807 |
5910-5913 |
VBP |
denotes |
are |
T1808 |
5924-5926 |
IN |
denotes |
in |
T1809 |
5927-5936 |
JJ |
denotes |
different |
T1810 |
5937-5944 |
NNS |
denotes |
neurons |
T1811 |
5945-5946 |
-LRB- |
denotes |
[ |
T1812 |
5946-5948 |
CD |
denotes |
18 |
T1813 |
5948-5949 |
-RRB- |
denotes |
] |
T1814 |
5949-5950 |
. |
denotes |
. |
T1815 |
5950-6326 |
sentence |
denotes |
In a third model, there would be a limiting quantity of transcription factors - the cell might contain a single transcriptional 'machine' that is capable of accommodating the promoter of only one olfactory receptor gene, similar to the expression site body used by African trypanosomes to ensure singular expression of only one set of variant surface glycoprotein genes [22]. |
T1816 |
5951-5953 |
IN |
denotes |
In |
T1817 |
6046-6053 |
VB |
denotes |
contain |
T1818 |
5954-5955 |
DT |
denotes |
a |
T1819 |
5962-5967 |
NN |
denotes |
model |
T1820 |
5956-5961 |
JJ |
denotes |
third |
T1821 |
5967-5969 |
, |
denotes |
, |
T1822 |
5969-5974 |
EX |
denotes |
there |
T1823 |
5981-5983 |
VB |
denotes |
be |
T1824 |
5975-5980 |
MD |
denotes |
would |
T1825 |
5984-5985 |
DT |
denotes |
a |
T1826 |
5995-6003 |
NN |
denotes |
quantity |
T1827 |
5986-5994 |
VBG |
denotes |
limiting |
T1828 |
6004-6006 |
IN |
denotes |
of |
T1829 |
6007-6020 |
NN |
denotes |
transcription |
T1830 |
6021-6028 |
NNS |
denotes |
factors |
T1831 |
6029-6030 |
: |
denotes |
- |
T1832 |
6031-6034 |
DT |
denotes |
the |
T1833 |
6035-6039 |
NN |
denotes |
cell |
T1834 |
6040-6045 |
MD |
denotes |
might |
T1835 |
6054-6055 |
DT |
denotes |
a |
T1836 |
6080-6087 |
NN |
denotes |
machine |
T1837 |
6056-6062 |
JJ |
denotes |
single |
T1838 |
6063-6078 |
JJ |
denotes |
transcriptional |
T1839 |
6079-6080 |
`` |
denotes |
' |
T1840 |
6087-6088 |
'' |
denotes |
' |
T1841 |
6089-6093 |
WDT |
denotes |
that |
T1842 |
6094-6096 |
VBZ |
denotes |
is |
T1843 |
6097-6104 |
JJ |
denotes |
capable |
T1844 |
6105-6107 |
IN |
denotes |
of |
T1845 |
6108-6121 |
VBG |
denotes |
accommodating |
T1846 |
6122-6125 |
DT |
denotes |
the |
T1847 |
6126-6134 |
NN |
denotes |
promoter |
T1848 |
6135-6137 |
IN |
denotes |
of |
T1849 |
6138-6142 |
RB |
denotes |
only |
T1850 |
6166-6170 |
NN |
denotes |
gene |
T1851 |
6143-6146 |
CD |
denotes |
one |
T1852 |
6147-6156 |
JJ |
denotes |
olfactory |
T1853 |
6157-6165 |
NN |
denotes |
receptor |
T1854 |
6170-6172 |
, |
denotes |
, |
T1855 |
6172-6179 |
JJ |
denotes |
similar |
T1856 |
6180-6182 |
IN |
denotes |
to |
T1857 |
6183-6186 |
DT |
denotes |
the |
T1858 |
6203-6207 |
NN |
denotes |
body |
T1859 |
6187-6197 |
NN |
denotes |
expression |
T1860 |
6198-6202 |
NN |
denotes |
site |
T1861 |
6208-6212 |
VBN |
denotes |
used |
T1862 |
6213-6215 |
IN |
denotes |
by |
T1863 |
6216-6223 |
JJ |
denotes |
African |
T1864 |
6224-6236 |
NNPS |
denotes |
trypanosomes |
T1865 |
6237-6239 |
TO |
denotes |
to |
T1866 |
6240-6246 |
VB |
denotes |
ensure |
T1867 |
6247-6255 |
JJ |
denotes |
singular |
T1868 |
6256-6266 |
NN |
denotes |
expression |
T1869 |
6267-6269 |
IN |
denotes |
of |
T1870 |
6270-6274 |
RB |
denotes |
only |
T1871 |
6279-6282 |
NN |
denotes |
set |
T1872 |
6275-6278 |
CD |
denotes |
one |
T1873 |
6283-6285 |
IN |
denotes |
of |
T1874 |
6286-6293 |
JJ |
denotes |
variant |
T1875 |
6302-6314 |
NN |
denotes |
glycoprotein |
T1876 |
6294-6301 |
NN |
denotes |
surface |
T1877 |
6315-6320 |
NNS |
denotes |
genes |
T1878 |
6321-6322 |
-LRB- |
denotes |
[ |
T1879 |
6322-6324 |
CD |
denotes |
22 |
T1880 |
6324-6325 |
-RRB- |
denotes |
] |
T1881 |
6325-6326 |
. |
denotes |
. |
T1882 |
6326-6572 |
sentence |
denotes |
Finally, in a fourth model, transcriptional activity at one stochastically chosen olfactory receptor allele might send negative feedback to repress activity of all other olfactory receptors and/or positive feedback to enhance its own expression. |
T1883 |
6327-6334 |
RB |
denotes |
Finally |
T1884 |
6441-6445 |
VB |
denotes |
send |
T1885 |
6334-6336 |
, |
denotes |
, |
T1886 |
6336-6338 |
IN |
denotes |
in |
T1887 |
6339-6340 |
DT |
denotes |
a |
T1888 |
6348-6353 |
NN |
denotes |
model |
T1889 |
6341-6347 |
JJ |
denotes |
fourth |
T1890 |
6353-6355 |
, |
denotes |
, |
T1891 |
6355-6370 |
JJ |
denotes |
transcriptional |
T1892 |
6371-6379 |
NN |
denotes |
activity |
T1893 |
6380-6382 |
IN |
denotes |
at |
T1894 |
6383-6386 |
CD |
denotes |
one |
T1895 |
6428-6434 |
NN |
denotes |
allele |
T1896 |
6387-6401 |
RB |
denotes |
stochastically |
T1897 |
6402-6408 |
VBN |
denotes |
chosen |
T1898 |
6409-6418 |
JJ |
denotes |
olfactory |
T1899 |
6419-6427 |
NN |
denotes |
receptor |
T1900 |
6435-6440 |
MD |
denotes |
might |
T1901 |
6446-6454 |
JJ |
denotes |
negative |
T1902 |
6455-6463 |
NN |
denotes |
feedback |
T1903 |
6464-6466 |
TO |
denotes |
to |
T1904 |
6467-6474 |
VB |
denotes |
repress |
T1905 |
6475-6483 |
NN |
denotes |
activity |
T1906 |
6484-6486 |
IN |
denotes |
of |
T1907 |
6487-6490 |
DT |
denotes |
all |
T1908 |
6507-6516 |
NNS |
denotes |
receptors |
T1909 |
6491-6496 |
JJ |
denotes |
other |
T1910 |
6497-6506 |
JJ |
denotes |
olfactory |
T1911 |
6517-6520 |
CC |
denotes |
and |
T1912 |
6520-6521 |
HYPH |
denotes |
/ |
T1913 |
6521-6523 |
CC |
denotes |
or |
T1914 |
6524-6532 |
JJ |
denotes |
positive |
T1915 |
6533-6541 |
NN |
denotes |
feedback |
T1916 |
6542-6544 |
TO |
denotes |
to |
T1917 |
6545-6552 |
VB |
denotes |
enhance |
T1918 |
6553-6556 |
PRP$ |
denotes |
its |
T1919 |
6561-6571 |
NN |
denotes |
expression |
T1920 |
6557-6560 |
JJ |
denotes |
own |
T1921 |
6571-6572 |
. |
denotes |
. |
T1922 |
6572-6778 |
sentence |
denotes |
In the latter three models, some or all olfactory receptor genes might share transcription factor binding motifs, and in the first model, olfactory receptor genes might share a common recombination signal. |
T1923 |
6573-6575 |
IN |
denotes |
In |
T1924 |
6644-6649 |
VB |
denotes |
share |
T1925 |
6576-6579 |
DT |
denotes |
the |
T1926 |
6593-6599 |
NNS |
denotes |
models |
T1927 |
6580-6586 |
JJ |
denotes |
latter |
T1928 |
6587-6592 |
CD |
denotes |
three |
T1929 |
6599-6601 |
, |
denotes |
, |
T1930 |
6601-6605 |
DT |
denotes |
some |
T1931 |
6606-6608 |
CC |
denotes |
or |
T1932 |
6609-6612 |
DT |
denotes |
all |
T1933 |
6632-6637 |
NNS |
denotes |
genes |
T1934 |
6613-6622 |
JJ |
denotes |
olfactory |
T1935 |
6623-6631 |
NN |
denotes |
receptor |
T1936 |
6638-6643 |
MD |
denotes |
might |
T1937 |
6650-6663 |
NN |
denotes |
transcription |
T1938 |
6664-6670 |
NN |
denotes |
factor |
T1939 |
6671-6678 |
NN |
denotes |
binding |
T1940 |
6679-6685 |
NNS |
denotes |
motifs |
T1941 |
6685-6687 |
, |
denotes |
, |
T1942 |
6687-6690 |
CC |
denotes |
and |
T1943 |
6691-6693 |
IN |
denotes |
in |
T1944 |
6742-6747 |
VB |
denotes |
share |
T1945 |
6694-6697 |
DT |
denotes |
the |
T1946 |
6704-6709 |
NN |
denotes |
model |
T1947 |
6698-6703 |
JJ |
denotes |
first |
T1948 |
6709-6711 |
, |
denotes |
, |
T1949 |
6711-6720 |
JJ |
denotes |
olfactory |
T1950 |
6721-6729 |
NN |
denotes |
receptor |
T1951 |
6730-6735 |
NNS |
denotes |
genes |
T1952 |
6736-6741 |
MD |
denotes |
might |
T1953 |
6748-6749 |
DT |
denotes |
a |
T1954 |
6771-6777 |
NN |
denotes |
signal |
T1955 |
6750-6756 |
JJ |
denotes |
common |
T1956 |
6757-6770 |
NN |
denotes |
recombination |
T1957 |
6777-6778 |
. |
denotes |
. |
T1958 |
6778-6975 |
sentence |
denotes |
In order to perform computational and experimental searches for such signals, it is important to have a better idea of the transcriptional start site of a large number of olfactory receptor genes. |
T1959 |
6779-6781 |
IN |
denotes |
In |
T1960 |
6860-6862 |
VBZ |
denotes |
is |
T1961 |
6782-6787 |
NN |
denotes |
order |
T1962 |
6788-6790 |
TO |
denotes |
to |
T1963 |
6791-6798 |
VB |
denotes |
perform |
T1964 |
6799-6812 |
JJ |
denotes |
computational |
T1965 |
6830-6838 |
NNS |
denotes |
searches |
T1966 |
6813-6816 |
CC |
denotes |
and |
T1967 |
6817-6829 |
JJ |
denotes |
experimental |
T1968 |
6839-6842 |
IN |
denotes |
for |
T1969 |
6843-6847 |
JJ |
denotes |
such |
T1970 |
6848-6855 |
NNS |
denotes |
signals |
T1971 |
6855-6857 |
, |
denotes |
, |
T1972 |
6857-6859 |
PRP |
denotes |
it |
T1973 |
6863-6872 |
JJ |
denotes |
important |
T1974 |
6873-6875 |
TO |
denotes |
to |
T1975 |
6876-6880 |
VB |
denotes |
have |
T1976 |
6881-6882 |
DT |
denotes |
a |
T1977 |
6890-6894 |
NN |
denotes |
idea |
T1978 |
6883-6889 |
JJR |
denotes |
better |
T1979 |
6895-6897 |
IN |
denotes |
of |
T1980 |
6898-6901 |
DT |
denotes |
the |
T1981 |
6924-6928 |
NN |
denotes |
site |
T1982 |
6902-6917 |
JJ |
denotes |
transcriptional |
T1983 |
6918-6923 |
NN |
denotes |
start |
T1984 |
6929-6931 |
IN |
denotes |
of |
T1985 |
6932-6933 |
DT |
denotes |
a |
T1986 |
6940-6946 |
NN |
denotes |
number |
T1987 |
6934-6939 |
JJ |
denotes |
large |
T1988 |
6947-6949 |
IN |
denotes |
of |
T1989 |
6950-6959 |
JJ |
denotes |
olfactory |
T1990 |
6960-6968 |
NN |
denotes |
receptor |
T1991 |
6969-6974 |
NNS |
denotes |
genes |
T1992 |
6974-6975 |
. |
denotes |
. |
T1993 |
6975-7139 |
sentence |
denotes |
Our olfactory receptor EST collection provides 5' untranslated region (UTR) sequences for many genes and, therefore, a large dataset of candidate promoter regions. |
T1994 |
6976-6979 |
PRP$ |
denotes |
Our |
T1995 |
7003-7013 |
NN |
denotes |
collection |
T1996 |
6980-6989 |
JJ |
denotes |
olfactory |
T1997 |
6990-6998 |
NN |
denotes |
receptor |
T1998 |
6999-7002 |
NN |
denotes |
EST |
T1999 |
7014-7022 |
VBZ |
denotes |
provides |
T2000 |
7023-7024 |
CD |
denotes |
5 |
T2001 |
7052-7061 |
NNS |
denotes |
sequences |
T2002 |
7024-7025 |
SYM |
denotes |
' |
T2003 |
7026-7038 |
JJ |
denotes |
untranslated |
T2004 |
7039-7045 |
NN |
denotes |
region |
T2005 |
7046-7047 |
-LRB- |
denotes |
( |
T2006 |
7047-7050 |
NN |
denotes |
UTR |
T2007 |
7050-7051 |
-RRB- |
denotes |
) |
T2008 |
7062-7065 |
IN |
denotes |
for |
T2009 |
7066-7070 |
JJ |
denotes |
many |
T2010 |
7071-7076 |
NNS |
denotes |
genes |
T2011 |
7077-7080 |
CC |
denotes |
and |
T2012 |
7080-7082 |
, |
denotes |
, |
T2013 |
7082-7091 |
RB |
denotes |
therefore |
T2014 |
7101-7108 |
NN |
denotes |
dataset |
T2015 |
7091-7093 |
, |
denotes |
, |
T2016 |
7093-7094 |
DT |
denotes |
a |
T2017 |
7095-7100 |
JJ |
denotes |
large |
T2018 |
7109-7111 |
IN |
denotes |
of |
T2019 |
7112-7121 |
NN |
denotes |
candidate |
T2020 |
7122-7130 |
NN |
denotes |
promoter |
T2021 |
7131-7138 |
NNS |
denotes |
regions |
T2022 |
7138-7139 |
. |
denotes |
. |
T2023 |
7139-7281 |
sentence |
denotes |
Olfactory receptor genes have an intronless coding region, simplifying both computational and experimental olfactory receptor identification. |
T2024 |
7140-7149 |
JJ |
denotes |
Olfactory |
T2025 |
7150-7158 |
NN |
denotes |
receptor |
T2026 |
7159-7164 |
NNS |
denotes |
genes |
T2027 |
7165-7169 |
VBP |
denotes |
have |
T2028 |
7170-7172 |
DT |
denotes |
an |
T2029 |
7191-7197 |
NN |
denotes |
region |
T2030 |
7173-7183 |
JJ |
denotes |
intronless |
T2031 |
7184-7190 |
VBG |
denotes |
coding |
T2032 |
7197-7199 |
, |
denotes |
, |
T2033 |
7199-7210 |
VBG |
denotes |
simplifying |
T2034 |
7211-7215 |
CC |
denotes |
both |
T2035 |
7216-7229 |
JJ |
denotes |
computational |
T2036 |
7266-7280 |
NN |
denotes |
identification |
T2037 |
7230-7233 |
CC |
denotes |
and |
T2038 |
7234-7246 |
JJ |
denotes |
experimental |
T2039 |
7247-7256 |
JJ |
denotes |
olfactory |
T2040 |
7257-7265 |
NN |
denotes |
receptor |
T2041 |
7280-7281 |
. |
denotes |
. |
T2042 |
7281-7360 |
sentence |
denotes |
For a small number of olfactory receptors, gene structure has been determined. |
T2043 |
7282-7285 |
IN |
denotes |
For |
T2044 |
7349-7359 |
VBN |
denotes |
determined |
T2045 |
7286-7287 |
DT |
denotes |
a |
T2046 |
7294-7300 |
NN |
denotes |
number |
T2047 |
7288-7293 |
JJ |
denotes |
small |
T2048 |
7301-7303 |
IN |
denotes |
of |
T2049 |
7304-7313 |
JJ |
denotes |
olfactory |
T2050 |
7314-7323 |
NNS |
denotes |
receptors |
T2051 |
7323-7325 |
, |
denotes |
, |
T2052 |
7325-7329 |
NN |
denotes |
gene |
T2053 |
7330-7339 |
NN |
denotes |
structure |
T2054 |
7340-7343 |
VBZ |
denotes |
has |
T2055 |
7344-7348 |
VBN |
denotes |
been |
T2056 |
7359-7360 |
. |
denotes |
. |
T2057 |
7360-7472 |
sentence |
denotes |
Additional 5' untranslated exons lie upstream of the coding region and can be alternatively spliced [19,23-26]. |
T2058 |
7361-7371 |
JJ |
denotes |
Additional |
T2059 |
7388-7393 |
NNS |
denotes |
exons |
T2060 |
7372-7373 |
CD |
denotes |
5 |
T2061 |
7373-7374 |
SYM |
denotes |
' |
T2062 |
7375-7387 |
JJ |
denotes |
untranslated |
T2063 |
7394-7397 |
VBP |
denotes |
lie |
T2064 |
7398-7406 |
RB |
denotes |
upstream |
T2065 |
7407-7409 |
IN |
denotes |
of |
T2066 |
7410-7413 |
DT |
denotes |
the |
T2067 |
7421-7427 |
NN |
denotes |
region |
T2068 |
7414-7420 |
VBG |
denotes |
coding |
T2069 |
7428-7431 |
CC |
denotes |
and |
T2070 |
7432-7435 |
MD |
denotes |
can |
T2071 |
7453-7460 |
VBN |
denotes |
spliced |
T2072 |
7436-7438 |
VB |
denotes |
be |
T2073 |
7439-7452 |
RB |
denotes |
alternatively |
T2074 |
7461-7462 |
-LRB- |
denotes |
[ |
T2075 |
7465-7467 |
CD |
denotes |
23 |
T2076 |
7462-7464 |
CD |
denotes |
19 |
T2077 |
7464-7465 |
, |
denotes |
, |
T2078 |
7467-7468 |
SYM |
denotes |
- |
T2079 |
7468-7470 |
CD |
denotes |
26 |
T2080 |
7470-7471 |
-RRB- |
denotes |
] |
T2081 |
7471-7472 |
. |
denotes |
. |
T2082 |
7472-7524 |
sentence |
denotes |
The 3' untranslated region is typically intronless. |
T2083 |
7473-7476 |
DT |
denotes |
The |
T2084 |
7493-7499 |
NN |
denotes |
region |
T2085 |
7477-7478 |
CD |
denotes |
3 |
T2086 |
7478-7479 |
SYM |
denotes |
' |
T2087 |
7480-7492 |
JJ |
denotes |
untranslated |
T2088 |
7500-7502 |
VBZ |
denotes |
is |
T2089 |
7503-7512 |
RB |
denotes |
typically |
T2090 |
7513-7523 |
JJ |
denotes |
intronless |
T2091 |
7523-7524 |
. |
denotes |
. |
T2092 |
7524-7657 |
sentence |
denotes |
Exceptions to this stereotyped structure have been described for some human olfactory receptors, but are thought to be rare [25-27]. |
T2093 |
7525-7535 |
NNS |
denotes |
Exceptions |
T2094 |
7576-7585 |
VBN |
denotes |
described |
T2095 |
7536-7538 |
IN |
denotes |
to |
T2096 |
7539-7543 |
DT |
denotes |
this |
T2097 |
7556-7565 |
NN |
denotes |
structure |
T2098 |
7544-7555 |
JJ |
denotes |
stereotyped |
T2099 |
7566-7570 |
VBP |
denotes |
have |
T2100 |
7571-7575 |
VBN |
denotes |
been |
T2101 |
7586-7589 |
IN |
denotes |
for |
T2102 |
7590-7594 |
DT |
denotes |
some |
T2103 |
7611-7620 |
NNS |
denotes |
receptors |
T2104 |
7595-7600 |
JJ |
denotes |
human |
T2105 |
7601-7610 |
JJ |
denotes |
olfactory |
T2106 |
7620-7622 |
, |
denotes |
, |
T2107 |
7622-7625 |
CC |
denotes |
but |
T2108 |
7626-7629 |
VBP |
denotes |
are |
T2109 |
7630-7637 |
VBN |
denotes |
thought |
T2110 |
7638-7640 |
TO |
denotes |
to |
T2111 |
7641-7643 |
VB |
denotes |
be |
T2112 |
7644-7648 |
JJ |
denotes |
rare |
T2113 |
7649-7650 |
-LRB- |
denotes |
[ |
T2114 |
7650-7652 |
CD |
denotes |
25 |
T2115 |
7652-7653 |
SYM |
denotes |
- |
T2116 |
7653-7655 |
CD |
denotes |
27 |
T2117 |
7655-7656 |
-RRB- |
denotes |
] |
T2118 |
7656-7657 |
. |
denotes |
. |
T2119 |
7657-7781 |
sentence |
denotes |
cDNA identification and RACE data have been used to determine gene structure for about 30 genes, see, for example, [19,23]. |
T2120 |
7658-7662 |
NN |
denotes |
cDNA |
T2121 |
7663-7677 |
NN |
denotes |
identification |
T2122 |
7702-7706 |
VBN |
denotes |
used |
T2123 |
7678-7681 |
CC |
denotes |
and |
T2124 |
7682-7686 |
NN |
denotes |
RACE |
T2125 |
7687-7691 |
NNS |
denotes |
data |
T2126 |
7692-7696 |
VBP |
denotes |
have |
T2127 |
7697-7701 |
VBN |
denotes |
been |
T2128 |
7707-7709 |
TO |
denotes |
to |
T2129 |
7710-7719 |
VB |
denotes |
determine |
T2130 |
7720-7724 |
NN |
denotes |
gene |
T2131 |
7725-7734 |
NN |
denotes |
structure |
T2132 |
7735-7738 |
IN |
denotes |
for |
T2133 |
7739-7744 |
RB |
denotes |
about |
T2134 |
7745-7747 |
CD |
denotes |
30 |
T2135 |
7748-7753 |
NNS |
denotes |
genes |
T2136 |
7753-7755 |
, |
denotes |
, |
T2137 |
7755-7758 |
VB |
denotes |
see |
T2138 |
7758-7760 |
, |
denotes |
, |
T2139 |
7760-7763 |
IN |
denotes |
for |
T2140 |
7777-7779 |
CD |
denotes |
23 |
T2141 |
7764-7771 |
NN |
denotes |
example |
T2142 |
7771-7773 |
, |
denotes |
, |
T2143 |
7773-7774 |
-LRB- |
denotes |
[ |
T2144 |
7774-7776 |
CD |
denotes |
19 |
T2145 |
7776-7777 |
, |
denotes |
, |
T2146 |
7779-7780 |
-RRB- |
denotes |
] |
T2147 |
7780-7781 |
. |
denotes |
. |
T2148 |
7781-7933 |
sentence |
denotes |
However, computational prediction of the location of 5' upstream exons and the extent of the 3' UTR from genomic sequence has been extremely difficult. |
T2149 |
7782-7789 |
RB |
denotes |
However |
T2150 |
7908-7912 |
VBN |
denotes |
been |
T2151 |
7789-7791 |
, |
denotes |
, |
T2152 |
7791-7804 |
JJ |
denotes |
computational |
T2153 |
7805-7815 |
NN |
denotes |
prediction |
T2154 |
7816-7818 |
IN |
denotes |
of |
T2155 |
7819-7822 |
DT |
denotes |
the |
T2156 |
7823-7831 |
NN |
denotes |
location |
T2157 |
7832-7834 |
IN |
denotes |
of |
T2158 |
7835-7836 |
CD |
denotes |
5 |
T2159 |
7847-7852 |
NNS |
denotes |
exons |
T2160 |
7836-7837 |
SYM |
denotes |
' |
T2161 |
7838-7846 |
JJ |
denotes |
upstream |
T2162 |
7853-7856 |
CC |
denotes |
and |
T2163 |
7857-7860 |
DT |
denotes |
the |
T2164 |
7861-7867 |
NN |
denotes |
extent |
T2165 |
7868-7870 |
IN |
denotes |
of |
T2166 |
7871-7874 |
DT |
denotes |
the |
T2167 |
7878-7881 |
NN |
denotes |
UTR |
T2168 |
7875-7876 |
CD |
denotes |
3 |
T2169 |
7876-7877 |
SYM |
denotes |
' |
T2170 |
7882-7886 |
IN |
denotes |
from |
T2171 |
7887-7894 |
JJ |
denotes |
genomic |
T2172 |
7895-7903 |
NN |
denotes |
sequence |
T2173 |
7904-7907 |
VBZ |
denotes |
has |
T2174 |
7913-7922 |
RB |
denotes |
extremely |
T2175 |
7923-7932 |
JJ |
denotes |
difficult |
T2176 |
7932-7933 |
. |
denotes |
. |
T2177 |
7933-8107 |
sentence |
denotes |
A combination of splice site predictions and similarity to other olfactory receptors has allowed some investigators to predict 5' exon locations for around 15 genes [25,28]. |
T2178 |
7934-7935 |
DT |
denotes |
A |
T2179 |
7936-7947 |
NN |
denotes |
combination |
T2180 |
8023-8030 |
VBN |
denotes |
allowed |
T2181 |
7948-7950 |
IN |
denotes |
of |
T2182 |
7951-7957 |
NN |
denotes |
splice |
T2183 |
7958-7962 |
NN |
denotes |
site |
T2184 |
7963-7974 |
NNS |
denotes |
predictions |
T2185 |
7975-7978 |
CC |
denotes |
and |
T2186 |
7979-7989 |
NN |
denotes |
similarity |
T2187 |
7990-7992 |
IN |
denotes |
to |
T2188 |
7993-7998 |
JJ |
denotes |
other |
T2189 |
8009-8018 |
NNS |
denotes |
receptors |
T2190 |
7999-8008 |
JJ |
denotes |
olfactory |
T2191 |
8019-8022 |
VBZ |
denotes |
has |
T2192 |
8031-8035 |
DT |
denotes |
some |
T2193 |
8036-8049 |
NNS |
denotes |
investigators |
T2194 |
8053-8060 |
VB |
denotes |
predict |
T2195 |
8050-8052 |
TO |
denotes |
to |
T2196 |
8061-8062 |
CD |
denotes |
5 |
T2197 |
8064-8068 |
NN |
denotes |
exon |
T2198 |
8062-8063 |
SYM |
denotes |
' |
T2199 |
8069-8078 |
NNS |
denotes |
locations |
T2200 |
8079-8082 |
IN |
denotes |
for |
T2201 |
8083-8089 |
RB |
denotes |
around |
T2202 |
8090-8092 |
CD |
denotes |
15 |
T2203 |
8093-8098 |
NNS |
denotes |
genes |
T2204 |
8099-8100 |
-LRB- |
denotes |
[ |
T2205 |
8103-8105 |
CD |
denotes |
28 |
T2206 |
8100-8102 |
CD |
denotes |
25 |
T2207 |
8102-8103 |
, |
denotes |
, |
T2208 |
8105-8106 |
-RRB- |
denotes |
] |
T2209 |
8106-8107 |
. |
denotes |
. |
T2210 |
8107-8195 |
sentence |
denotes |
Experimental validation shows that some, but not all, predictions are accurate [24,25]. |
T2211 |
8108-8120 |
JJ |
denotes |
Experimental |
T2212 |
8121-8131 |
NN |
denotes |
validation |
T2213 |
8132-8137 |
VBZ |
denotes |
shows |
T2214 |
8138-8142 |
IN |
denotes |
that |
T2215 |
8174-8177 |
VBP |
denotes |
are |
T2216 |
8143-8147 |
DT |
denotes |
some |
T2217 |
8147-8149 |
, |
denotes |
, |
T2218 |
8149-8152 |
CC |
denotes |
but |
T2219 |
8153-8156 |
RB |
denotes |
not |
T2220 |
8157-8160 |
DT |
denotes |
all |
T2221 |
8160-8162 |
, |
denotes |
, |
T2222 |
8162-8173 |
NNS |
denotes |
predictions |
T2223 |
8178-8186 |
JJ |
denotes |
accurate |
T2224 |
8187-8188 |
-LRB- |
denotes |
[ |
T2225 |
8191-8193 |
CD |
denotes |
25 |
T2226 |
8188-8190 |
CD |
denotes |
24 |
T2227 |
8190-8191 |
, |
denotes |
, |
T2228 |
8193-8194 |
-RRB- |
denotes |
] |
T2229 |
8194-8195 |
. |
denotes |
. |
T2230 |
8195-8303 |
sentence |
denotes |
The total number of olfactory receptors for which gene structure is known is vastly increased by our study. |
T2231 |
8196-8199 |
DT |
denotes |
The |
T2232 |
8206-8212 |
NN |
denotes |
number |
T2233 |
8200-8205 |
JJ |
denotes |
total |
T2234 |
8280-8289 |
VBN |
denotes |
increased |
T2235 |
8213-8215 |
IN |
denotes |
of |
T2236 |
8216-8225 |
JJ |
denotes |
olfactory |
T2237 |
8226-8235 |
NNS |
denotes |
receptors |
T2238 |
8236-8239 |
IN |
denotes |
for |
T2239 |
8264-8269 |
VBN |
denotes |
known |
T2240 |
8240-8245 |
WDT |
denotes |
which |
T2241 |
8246-8250 |
NN |
denotes |
gene |
T2242 |
8251-8260 |
NN |
denotes |
structure |
T2243 |
8261-8263 |
VBZ |
denotes |
is |
T2244 |
8270-8272 |
VBZ |
denotes |
is |
T2245 |
8273-8279 |
RB |
denotes |
vastly |
T2246 |
8290-8292 |
IN |
denotes |
by |
T2247 |
8293-8296 |
PRP$ |
denotes |
our |
T2248 |
8297-8302 |
NN |
denotes |
study |
T2249 |
8302-8303 |
. |
denotes |
. |
T2250 |
8303-8419 |
sentence |
denotes |
In this report, we describe the isolation and analysis of over 1,200 cDNAs representing 419 odorant receptor genes. |
T2251 |
8304-8306 |
IN |
denotes |
In |
T2252 |
8323-8331 |
VBP |
denotes |
describe |
T2253 |
8307-8311 |
DT |
denotes |
this |
T2254 |
8312-8318 |
NN |
denotes |
report |
T2255 |
8318-8320 |
, |
denotes |
, |
T2256 |
8320-8322 |
PRP |
denotes |
we |
T2257 |
8332-8335 |
DT |
denotes |
the |
T2258 |
8336-8345 |
NN |
denotes |
isolation |
T2259 |
8346-8349 |
CC |
denotes |
and |
T2260 |
8350-8358 |
NN |
denotes |
analysis |
T2261 |
8359-8361 |
IN |
denotes |
of |
T2262 |
8362-8366 |
IN |
denotes |
over |
T2263 |
8367-8372 |
CD |
denotes |
1,200 |
T2264 |
8373-8378 |
NNS |
denotes |
cDNAs |
T2265 |
8379-8391 |
VBG |
denotes |
representing |
T2266 |
8392-8395 |
CD |
denotes |
419 |
T2267 |
8413-8418 |
NNS |
denotes |
genes |
T2268 |
8396-8403 |
JJ |
denotes |
odorant |
T2269 |
8404-8412 |
NN |
denotes |
receptor |
T2270 |
8418-8419 |
. |
denotes |
. |
T2271 |
8419-8568 |
sentence |
denotes |
We screened a mouse olfactory epithelium library with degenerate olfactory receptor probes and obtained 5' end sequences (ESTs) from purified cDNAs. |
T2272 |
8420-8422 |
PRP |
denotes |
We |
T2273 |
8423-8431 |
VBD |
denotes |
screened |
T2274 |
8432-8433 |
DT |
denotes |
a |
T2275 |
8461-8468 |
NN |
denotes |
library |
T2276 |
8434-8439 |
NN |
denotes |
mouse |
T2277 |
8450-8460 |
NN |
denotes |
epithelium |
T2278 |
8440-8449 |
JJ |
denotes |
olfactory |
T2279 |
8469-8473 |
IN |
denotes |
with |
T2280 |
8474-8484 |
JJ |
denotes |
degenerate |
T2281 |
8504-8510 |
NNS |
denotes |
probes |
T2282 |
8485-8494 |
JJ |
denotes |
olfactory |
T2283 |
8495-8503 |
NN |
denotes |
receptor |
T2284 |
8511-8514 |
CC |
denotes |
and |
T2285 |
8515-8523 |
VBN |
denotes |
obtained |
T2286 |
8524-8525 |
CD |
denotes |
5 |
T2287 |
8525-8526 |
SYM |
denotes |
' |
T2288 |
8527-8530 |
NN |
denotes |
end |
T2289 |
8531-8540 |
NNS |
denotes |
sequences |
T2290 |
8541-8542 |
-LRB- |
denotes |
( |
T2291 |
8542-8546 |
NNS |
denotes |
ESTs |
T2292 |
8546-8547 |
-RRB- |
denotes |
) |
T2293 |
8548-8552 |
IN |
denotes |
from |
T2294 |
8553-8561 |
VBN |
denotes |
purified |
T2295 |
8562-8567 |
NNS |
denotes |
cDNAs |
T2296 |
8567-8568 |
. |
denotes |
. |
T2297 |
8568-8834 |
sentence |
denotes |
These clones confirm olfactory expression of over 400 olfactory receptors, provide their gene structure, demonstrate that not all olfactory receptors are expressed at the same level and show that most olfactory receptor genes have multiple transcriptional isoforms. |
T2298 |
8569-8574 |
DT |
denotes |
These |
T2299 |
8575-8581 |
NNS |
denotes |
clones |
T2300 |
8582-8589 |
VBP |
denotes |
confirm |
T2301 |
8590-8599 |
JJ |
denotes |
olfactory |
T2302 |
8600-8610 |
NN |
denotes |
expression |
T2303 |
8611-8613 |
IN |
denotes |
of |
T2304 |
8614-8618 |
IN |
denotes |
over |
T2305 |
8619-8622 |
CD |
denotes |
400 |
T2306 |
8633-8642 |
NNS |
denotes |
receptors |
T2307 |
8623-8632 |
JJ |
denotes |
olfactory |
T2308 |
8642-8644 |
, |
denotes |
, |
T2309 |
8644-8651 |
VBP |
denotes |
provide |
T2310 |
8652-8657 |
PRP$ |
denotes |
their |
T2311 |
8663-8672 |
NN |
denotes |
structure |
T2312 |
8658-8662 |
NN |
denotes |
gene |
T2313 |
8672-8674 |
, |
denotes |
, |
T2314 |
8674-8685 |
VBP |
denotes |
demonstrate |
T2315 |
8686-8690 |
IN |
denotes |
that |
T2316 |
8723-8732 |
VBN |
denotes |
expressed |
T2317 |
8691-8694 |
RB |
denotes |
not |
T2318 |
8709-8718 |
NNS |
denotes |
receptors |
T2319 |
8695-8698 |
DT |
denotes |
all |
T2320 |
8699-8708 |
JJ |
denotes |
olfactory |
T2321 |
8719-8722 |
VBP |
denotes |
are |
T2322 |
8733-8735 |
IN |
denotes |
at |
T2323 |
8736-8739 |
DT |
denotes |
the |
T2324 |
8745-8750 |
NN |
denotes |
level |
T2325 |
8740-8744 |
JJ |
denotes |
same |
T2326 |
8751-8754 |
CC |
denotes |
and |
T2327 |
8755-8759 |
VBP |
denotes |
show |
T2328 |
8760-8764 |
IN |
denotes |
that |
T2329 |
8795-8799 |
VBP |
denotes |
have |
T2330 |
8765-8769 |
JJS |
denotes |
most |
T2331 |
8789-8794 |
NNS |
denotes |
genes |
T2332 |
8770-8779 |
JJ |
denotes |
olfactory |
T2333 |
8780-8788 |
NN |
denotes |
receptor |
T2334 |
8800-8808 |
JJ |
denotes |
multiple |
T2335 |
8825-8833 |
NNS |
denotes |
isoforms |
T2336 |
8809-8824 |
JJ |
denotes |
transcriptional |
T2337 |
8833-8834 |
. |
denotes |
. |
T2624 |
8845-8847 |
RB |
denotes |
At |
T2625 |
8854-8857 |
CD |
denotes |
419 |
T2626 |
8848-8853 |
RBS |
denotes |
least |
T2627 |
8883-8888 |
NNS |
denotes |
genes |
T2628 |
8858-8863 |
NN |
denotes |
mouse |
T2629 |
8864-8873 |
JJ |
denotes |
olfactory |
T2630 |
8874-8882 |
NN |
denotes |
receptor |
T2631 |
8893-8902 |
VBN |
denotes |
expressed |
T2632 |
8889-8892 |
VBP |
denotes |
are |
T2633 |
8903-8905 |
IN |
denotes |
in |
T2634 |
8906-8909 |
DT |
denotes |
the |
T2635 |
8920-8930 |
NN |
denotes |
epithelium |
T2636 |
8910-8919 |
JJ |
denotes |
olfactory |
T2637 |
8930-9087 |
sentence |
denotes |
We have isolated 1,264 olfactory receptor cDNA clones, which together confirm the olfactory epithelial expression of 419 annotated olfactory receptor genes. |
T2638 |
8931-8933 |
PRP |
denotes |
We |
T2639 |
8939-8947 |
VBN |
denotes |
isolated |
T2640 |
8934-8938 |
VBP |
denotes |
have |
T2641 |
8948-8953 |
CD |
denotes |
1,264 |
T2642 |
8978-8984 |
NNS |
denotes |
clones |
T2643 |
8954-8963 |
JJ |
denotes |
olfactory |
T2644 |
8964-8972 |
NN |
denotes |
receptor |
T2645 |
8973-8977 |
NN |
denotes |
cDNA |
T2646 |
8984-8986 |
, |
denotes |
, |
T2647 |
8986-8991 |
WDT |
denotes |
which |
T2648 |
9001-9008 |
VBP |
denotes |
confirm |
T2649 |
8992-9000 |
RB |
denotes |
together |
T2650 |
9009-9012 |
DT |
denotes |
the |
T2651 |
9034-9044 |
NN |
denotes |
expression |
T2652 |
9013-9022 |
JJ |
denotes |
olfactory |
T2653 |
9023-9033 |
JJ |
denotes |
epithelial |
T2654 |
9045-9047 |
IN |
denotes |
of |
T2655 |
9048-9051 |
CD |
denotes |
419 |
T2656 |
9081-9086 |
NNS |
denotes |
genes |
T2657 |
9052-9061 |
VBN |
denotes |
annotated |
T2658 |
9062-9071 |
JJ |
denotes |
olfactory |
T2659 |
9072-9080 |
NN |
denotes |
receptor |
T2660 |
9086-9087 |
. |
denotes |
. |
T2661 |
9087-9345 |
sentence |
denotes |
We used low-stringency hybridization with degenerate olfactory receptor DNA probes to screen around 4,100,000 plaque-forming units (pfu) of an adult mouse olfactory epithelium cDNA library and around 640,000 pfu of an embryonic olfactory epithelium library. |
T2662 |
9088-9090 |
PRP |
denotes |
We |
T2663 |
9091-9095 |
VBD |
denotes |
used |
T2664 |
9096-9099 |
JJ |
denotes |
low |
T2665 |
9100-9110 |
NN |
denotes |
stringency |
T2666 |
9099-9100 |
HYPH |
denotes |
- |
T2667 |
9111-9124 |
NN |
denotes |
hybridization |
T2668 |
9125-9129 |
IN |
denotes |
with |
T2669 |
9130-9140 |
JJ |
denotes |
degenerate |
T2670 |
9164-9170 |
NNS |
denotes |
probes |
T2671 |
9141-9150 |
JJ |
denotes |
olfactory |
T2672 |
9151-9159 |
NN |
denotes |
receptor |
T2673 |
9160-9163 |
NN |
denotes |
DNA |
T2674 |
9171-9173 |
TO |
denotes |
to |
T2675 |
9174-9180 |
VB |
denotes |
screen |
T2676 |
9181-9187 |
RB |
denotes |
around |
T2677 |
9188-9197 |
CD |
denotes |
4,100,000 |
T2678 |
9213-9218 |
NNS |
denotes |
units |
T2679 |
9198-9204 |
NN |
denotes |
plaque |
T2680 |
9205-9212 |
VBG |
denotes |
forming |
T2681 |
9204-9205 |
HYPH |
denotes |
- |
T2682 |
9219-9220 |
-LRB- |
denotes |
( |
T2683 |
9220-9223 |
NNS |
denotes |
pfu |
T2684 |
9223-9224 |
-RRB- |
denotes |
) |
T2685 |
9225-9227 |
IN |
denotes |
of |
T2686 |
9228-9230 |
DT |
denotes |
an |
T2687 |
9269-9276 |
NN |
denotes |
library |
T2688 |
9231-9236 |
JJ |
denotes |
adult |
T2689 |
9237-9242 |
NN |
denotes |
mouse |
T2690 |
9264-9268 |
NN |
denotes |
cDNA |
T2691 |
9243-9252 |
JJ |
denotes |
olfactory |
T2692 |
9253-9263 |
NN |
denotes |
epithelium |
T2693 |
9277-9280 |
CC |
denotes |
and |
T2694 |
9281-9287 |
RB |
denotes |
around |
T2695 |
9288-9295 |
CD |
denotes |
640,000 |
T2696 |
9296-9299 |
NNS |
denotes |
pfu |
T2697 |
9300-9302 |
IN |
denotes |
of |
T2698 |
9303-9305 |
DT |
denotes |
an |
T2699 |
9337-9344 |
NN |
denotes |
library |
T2700 |
9306-9315 |
JJ |
denotes |
embryonic |
T2701 |
9326-9336 |
NN |
denotes |
epithelium |
T2702 |
9316-9325 |
JJ |
denotes |
olfactory |
T2703 |
9344-9345 |
. |
denotes |
. |
T2704 |
9345-9461 |
sentence |
denotes |
We obtained sequences from 1,715 hybridization-positive cDNAs following secondary screens to isolate single clones. |
T2705 |
9346-9348 |
PRP |
denotes |
We |
T2706 |
9349-9357 |
VBD |
denotes |
obtained |
T2707 |
9358-9367 |
NNS |
denotes |
sequences |
T2708 |
9368-9372 |
IN |
denotes |
from |
T2709 |
9373-9378 |
CD |
denotes |
1,715 |
T2710 |
9402-9407 |
NNS |
denotes |
cDNAs |
T2711 |
9379-9392 |
NN |
denotes |
hybridization |
T2712 |
9393-9401 |
JJ |
denotes |
positive |
T2713 |
9392-9393 |
HYPH |
denotes |
- |
T2714 |
9408-9417 |
VBG |
denotes |
following |
T2715 |
9418-9427 |
JJ |
denotes |
secondary |
T2716 |
9428-9435 |
NNS |
denotes |
screens |
T2717 |
9436-9438 |
TO |
denotes |
to |
T2718 |
9439-9446 |
VB |
denotes |
isolate |
T2719 |
9447-9453 |
JJ |
denotes |
single |
T2720 |
9454-9460 |
NNS |
denotes |
clones |
T2721 |
9460-9461 |
. |
denotes |
. |
T2722 |
9461-9533 |
sentence |
denotes |
Of these clones, 1,264 yielded olfactory receptor-containing sequences. |
T2723 |
9462-9464 |
IN |
denotes |
Of |
T2724 |
9485-9492 |
VBD |
denotes |
yielded |
T2725 |
9465-9470 |
DT |
denotes |
these |
T2726 |
9471-9477 |
NNS |
denotes |
clones |
T2727 |
9477-9479 |
, |
denotes |
, |
T2728 |
9479-9484 |
CD |
denotes |
1,264 |
T2729 |
9493-9502 |
JJ |
denotes |
olfactory |
T2730 |
9503-9511 |
NN |
denotes |
receptor |
T2731 |
9512-9522 |
VBG |
denotes |
containing |
T2732 |
9511-9512 |
HYPH |
denotes |
- |
T2733 |
9523-9532 |
NNS |
denotes |
sequences |
T2734 |
9532-9533 |
. |
denotes |
. |
T2735 |
9533-9647 |
sentence |
denotes |
The 26% false-positive rate is a consequence of using low-stringency hybridization to obtain maximal sensitivity. |
T2736 |
9534-9537 |
DT |
denotes |
The |
T2737 |
9557-9561 |
NN |
denotes |
rate |
T2738 |
9538-9540 |
CD |
denotes |
26 |
T2739 |
9540-9541 |
NN |
denotes |
% |
T2740 |
9542-9547 |
JJ |
denotes |
false |
T2741 |
9548-9556 |
JJ |
denotes |
positive |
T2742 |
9547-9548 |
HYPH |
denotes |
- |
T2743 |
9562-9564 |
VBZ |
denotes |
is |
T2744 |
9565-9566 |
DT |
denotes |
a |
T2745 |
9567-9578 |
NN |
denotes |
consequence |
T2746 |
9579-9581 |
IN |
denotes |
of |
T2747 |
9582-9587 |
VBG |
denotes |
using |
T2748 |
9588-9591 |
JJ |
denotes |
low |
T2749 |
9592-9602 |
NN |
denotes |
stringency |
T2750 |
9591-9592 |
HYPH |
denotes |
- |
T2751 |
9603-9616 |
NN |
denotes |
hybridization |
T2752 |
9617-9619 |
TO |
denotes |
to |
T2753 |
9620-9626 |
VB |
denotes |
obtain |
T2754 |
9627-9634 |
JJ |
denotes |
maximal |
T2755 |
9635-9646 |
NN |
denotes |
sensitivity |
T2756 |
9646-9647 |
. |
denotes |
. |
T2757 |
9647-9955 |
sentence |
denotes |
Continuing the screen would have resulted in cDNAs from additional olfactory receptors, but we reached a point of limiting returns: our final batch of 45 olfactory receptor-positive sequences represented 33 different olfactory receptors, of which only four had not been encountered previously in our screen. |
T2758 |
9648-9658 |
VBG |
denotes |
Continuing |
T2759 |
9681-9689 |
VBN |
denotes |
resulted |
T2760 |
9659-9662 |
DT |
denotes |
the |
T2761 |
9663-9669 |
NN |
denotes |
screen |
T2762 |
9670-9675 |
MD |
denotes |
would |
T2763 |
9676-9680 |
VB |
denotes |
have |
T2764 |
9840-9851 |
VBD |
denotes |
represented |
T2765 |
9690-9692 |
IN |
denotes |
in |
T2766 |
9693-9698 |
NNS |
denotes |
cDNAs |
T2767 |
9699-9703 |
IN |
denotes |
from |
T2768 |
9704-9714 |
JJ |
denotes |
additional |
T2769 |
9725-9734 |
NNS |
denotes |
receptors |
T2770 |
9715-9724 |
JJ |
denotes |
olfactory |
T2771 |
9734-9736 |
, |
denotes |
, |
T2772 |
9736-9739 |
CC |
denotes |
but |
T2773 |
9740-9742 |
PRP |
denotes |
we |
T2774 |
9743-9750 |
VBD |
denotes |
reached |
T2775 |
9751-9752 |
DT |
denotes |
a |
T2776 |
9753-9758 |
NN |
denotes |
point |
T2777 |
9759-9761 |
IN |
denotes |
of |
T2778 |
9762-9770 |
VBG |
denotes |
limiting |
T2779 |
9771-9778 |
NNS |
denotes |
returns |
T2780 |
9778-9780 |
: |
denotes |
: |
T2781 |
9780-9783 |
PRP$ |
denotes |
our |
T2782 |
9790-9795 |
NN |
denotes |
batch |
T2783 |
9784-9789 |
JJ |
denotes |
final |
T2784 |
9796-9798 |
IN |
denotes |
of |
T2785 |
9799-9801 |
CD |
denotes |
45 |
T2786 |
9830-9839 |
NNS |
denotes |
sequences |
T2787 |
9802-9811 |
JJ |
denotes |
olfactory |
T2788 |
9812-9820 |
NN |
denotes |
receptor |
T2789 |
9821-9829 |
JJ |
denotes |
positive |
T2790 |
9820-9821 |
HYPH |
denotes |
- |
T2791 |
9852-9854 |
CD |
denotes |
33 |
T2792 |
9875-9884 |
NNS |
denotes |
receptors |
T2793 |
9855-9864 |
JJ |
denotes |
different |
T2794 |
9865-9874 |
JJ |
denotes |
olfactory |
T2795 |
9884-9886 |
, |
denotes |
, |
T2796 |
9886-9888 |
IN |
denotes |
of |
T2797 |
9918-9929 |
VBN |
denotes |
encountered |
T2798 |
9889-9894 |
WDT |
denotes |
which |
T2799 |
9895-9899 |
RB |
denotes |
only |
T2800 |
9900-9904 |
CD |
denotes |
four |
T2801 |
9905-9908 |
VBD |
denotes |
had |
T2802 |
9909-9912 |
RB |
denotes |
not |
T2803 |
9913-9917 |
VBN |
denotes |
been |
T2804 |
9930-9940 |
RB |
denotes |
previously |
T2805 |
9941-9943 |
IN |
denotes |
in |
T2806 |
9944-9947 |
PRP$ |
denotes |
our |
T2807 |
9948-9954 |
NN |
denotes |
screen |
T2808 |
9954-9955 |
. |
denotes |
. |
T2809 |
9955-10019 |
sentence |
denotes |
Sequence analysis shows that the libraries are of high quality. |
T2810 |
9956-9964 |
NN |
denotes |
Sequence |
T2811 |
9965-9973 |
NN |
denotes |
analysis |
T2812 |
9974-9979 |
VBZ |
denotes |
shows |
T2813 |
9980-9984 |
IN |
denotes |
that |
T2814 |
9999-10002 |
VBP |
denotes |
are |
T2815 |
9985-9988 |
DT |
denotes |
the |
T2816 |
9989-9998 |
NNS |
denotes |
libraries |
T2817 |
10003-10005 |
IN |
denotes |
of |
T2818 |
10006-10010 |
JJ |
denotes |
high |
T2819 |
10011-10018 |
NN |
denotes |
quality |
T2820 |
10018-10019 |
. |
denotes |
. |
T2821 |
10019-10173 |
sentence |
denotes |
Firstly, directional cloning was successful: only eight out of 1,430 cDNA sequences with any protein homology matched that protein on the reverse strand. |
T2822 |
10020-10027 |
RB |
denotes |
Firstly |
T2823 |
10130-10137 |
VBD |
denotes |
matched |
T2824 |
10027-10029 |
, |
denotes |
, |
T2825 |
10029-10040 |
JJ |
denotes |
directional |
T2826 |
10041-10048 |
NN |
denotes |
cloning |
T2827 |
10049-10052 |
VBD |
denotes |
was |
T2828 |
10053-10063 |
JJ |
denotes |
successful |
T2829 |
10063-10065 |
: |
denotes |
: |
T2830 |
10065-10069 |
RB |
denotes |
only |
T2831 |
10083-10088 |
CD |
denotes |
1,430 |
T2832 |
10070-10075 |
CD |
denotes |
eight |
T2833 |
10076-10079 |
IN |
denotes |
out |
T2834 |
10080-10082 |
IN |
denotes |
of |
T2835 |
10094-10103 |
NNS |
denotes |
sequences |
T2882 |
10339-10341 |
CD |
denotes |
80 |
T2883 |
10350-10356 |
IN |
denotes |
across |
T2884 |
10357-10359 |
RB |
denotes |
at |
T2885 |
10366-10369 |
CD |
denotes |
one |
T2836 |
10089-10093 |
NN |
denotes |
cDNA |
T2837 |
10104-10108 |
IN |
denotes |
with |
T2838 |
10109-10112 |
DT |
denotes |
any |
T2839 |
10121-10129 |
NN |
denotes |
homology |
T2840 |
10113-10120 |
NN |
denotes |
protein |
T2841 |
10138-10142 |
DT |
denotes |
that |
T2842 |
10143-10150 |
NN |
denotes |
protein |
T2843 |
10151-10153 |
IN |
denotes |
on |
T2844 |
10154-10157 |
DT |
denotes |
the |
T2845 |
10166-10172 |
NN |
denotes |
strand |
T2846 |
10158-10165 |
JJ |
denotes |
reverse |
T2847 |
10172-10173 |
. |
denotes |
. |
T2848 |
10173-10485 |
sentence |
denotes |
Secondly, genomic contamination is rare: when the 83 olfactory receptor-containing sequences that had a 5' UTR of 400 bp or longer were aligned to genomic sequence, 80 spliced across at least one intron, leaving a maximum of three clones (3.6%) that potentially represent genomic contamination of the libraries. |
T2849 |
10174-10182 |
RB |
denotes |
Secondly |
T2850 |
10342-10349 |
VBN |
denotes |
spliced |
T2851 |
10182-10184 |
, |
denotes |
, |
T2852 |
10184-10191 |
JJ |
denotes |
genomic |
T2853 |
10192-10205 |
NN |
denotes |
contamination |
T2854 |
10206-10208 |
VBZ |
denotes |
is |
T2855 |
10209-10213 |
JJ |
denotes |
rare |
T2856 |
10213-10215 |
: |
denotes |
: |
T2857 |
10215-10219 |
WRB |
denotes |
when |
T2858 |
10310-10317 |
VBN |
denotes |
aligned |
T2859 |
10220-10223 |
DT |
denotes |
the |
T2860 |
10257-10266 |
NNS |
denotes |
sequences |
T2861 |
10224-10226 |
CD |
denotes |
83 |
T2862 |
10227-10236 |
JJ |
denotes |
olfactory |
T2863 |
10237-10245 |
NN |
denotes |
receptor |
T2864 |
10246-10256 |
VBG |
denotes |
containing |
T2865 |
10245-10246 |
HYPH |
denotes |
- |
T2866 |
10267-10271 |
WDT |
denotes |
that |
T2867 |
10272-10275 |
VBD |
denotes |
had |
T2868 |
10276-10277 |
DT |
denotes |
a |
T2869 |
10281-10284 |
NN |
denotes |
UTR |
T2870 |
10278-10279 |
CD |
denotes |
5 |
T2871 |
10279-10280 |
SYM |
denotes |
' |
T2872 |
10285-10287 |
IN |
denotes |
of |
T2873 |
10288-10291 |
CD |
denotes |
400 |
T2874 |
10292-10294 |
NNS |
denotes |
bp |
T2875 |
10295-10297 |
CC |
denotes |
or |
T2876 |
10298-10304 |
JJR |
denotes |
longer |
T2877 |
10305-10309 |
VBD |
denotes |
were |
T2878 |
10318-10320 |
IN |
denotes |
to |
T2879 |
10321-10328 |
JJ |
denotes |
genomic |
T2880 |
10329-10337 |
NN |
denotes |
sequence |
T2881 |
10337-10339 |
, |
denotes |
, |
T2886 |
10360-10365 |
RBS |
denotes |
least |
T2887 |
10370-10376 |
NN |
denotes |
intron |
T2888 |
10376-10378 |
, |
denotes |
, |
T2889 |
10378-10385 |
VBG |
denotes |
leaving |
T2890 |
10386-10387 |
DT |
denotes |
a |
T2891 |
10388-10395 |
NN |
denotes |
maximum |
T2892 |
10396-10398 |
IN |
denotes |
of |
T2893 |
10399-10404 |
CD |
denotes |
three |
T2894 |
10405-10411 |
NNS |
denotes |
clones |
T2895 |
10412-10413 |
-LRB- |
denotes |
( |
T2896 |
10416-10417 |
NN |
denotes |
% |
T2897 |
10413-10416 |
CD |
denotes |
3.6 |
T2898 |
10417-10418 |
-RRB- |
denotes |
) |
T2899 |
10419-10423 |
WDT |
denotes |
that |
T2900 |
10436-10445 |
VBP |
denotes |
represent |
T2901 |
10424-10435 |
RB |
denotes |
potentially |
T2902 |
10446-10453 |
JJ |
denotes |
genomic |
T2903 |
10454-10467 |
NN |
denotes |
contamination |
T2904 |
10468-10470 |
IN |
denotes |
of |
T2905 |
10471-10474 |
DT |
denotes |
the |
T2906 |
10475-10484 |
NNS |
denotes |
libraries |
T2907 |
10484-10485 |
. |
denotes |
. |
T2908 |
10485-10706 |
sentence |
denotes |
Thirdly, most clones are of a reasonable length: although we did not determine whether clones are full-length, 881 of 1,264 (70%) olfactory receptor cDNAs contain the gene's start codon and at least some 5' UTR sequence. |
T2909 |
10486-10493 |
RB |
denotes |
Thirdly |
T2910 |
10641-10648 |
VBP |
denotes |
contain |
T2911 |
10493-10495 |
, |
denotes |
, |
T2912 |
10495-10499 |
JJS |
denotes |
most |
T2913 |
10500-10506 |
NNS |
denotes |
clones |
T2914 |
10507-10510 |
VBP |
denotes |
are |
T2915 |
10511-10513 |
IN |
denotes |
of |
T2916 |
10514-10515 |
DT |
denotes |
a |
T2917 |
10527-10533 |
NN |
denotes |
length |
T2918 |
10516-10526 |
JJ |
denotes |
reasonable |
T2919 |
10533-10535 |
: |
denotes |
: |
T2920 |
10535-10543 |
IN |
denotes |
although |
T2921 |
10555-10564 |
VB |
denotes |
determine |
T2922 |
10544-10546 |
PRP |
denotes |
we |
T2923 |
10547-10550 |
VBD |
denotes |
did |
T2924 |
10551-10554 |
RB |
denotes |
not |
T2925 |
10565-10572 |
IN |
denotes |
whether |
T2926 |
10580-10583 |
VBP |
denotes |
are |
T2927 |
10573-10579 |
NNS |
denotes |
clones |
T2928 |
10584-10588 |
JJ |
denotes |
full |
T2929 |
10589-10595 |
NN |
denotes |
length |
T2930 |
10588-10589 |
HYPH |
denotes |
- |
T2931 |
10595-10597 |
, |
denotes |
, |
T2932 |
10597-10600 |
CD |
denotes |
881 |
T2933 |
10604-10609 |
CD |
denotes |
1,264 |
T2934 |
10601-10603 |
IN |
denotes |
of |
T2935 |
10635-10640 |
NNS |
denotes |
cDNAs |
T2936 |
10610-10611 |
-LRB- |
denotes |
( |
T2937 |
10613-10614 |
NN |
denotes |
% |
T2938 |
10611-10613 |
CD |
denotes |
70 |
T2939 |
10614-10615 |
-RRB- |
denotes |
) |
T2940 |
10616-10625 |
JJ |
denotes |
olfactory |
T2941 |
10626-10634 |
NN |
denotes |
receptor |
T2942 |
10649-10652 |
DT |
denotes |
the |
T2943 |
10653-10657 |
NN |
denotes |
gene |
T2944 |
10666-10671 |
NN |
denotes |
codon |
T2945 |
10657-10659 |
POS |
denotes |
's |
T2946 |
10660-10665 |
NN |
denotes |
start |
T2947 |
10672-10675 |
CC |
denotes |
and |
T2948 |
10676-10678 |
RB |
denotes |
at |
T2949 |
10679-10684 |
RBS |
denotes |
least |
T2950 |
10697-10705 |
NN |
denotes |
sequence |
T2951 |
10685-10689 |
DT |
denotes |
some |
T2952 |
10690-10691 |
CD |
denotes |
5 |
T2953 |
10693-10696 |
NN |
denotes |
UTR |
T2954 |
10691-10692 |
SYM |
denotes |
' |
T2955 |
10705-10706 |
. |
denotes |
. |
T2956 |
10706-10893 |
sentence |
denotes |
In order to match cDNAs to their genomic counterparts, first we updated our catalog of mouse olfactory receptor genes [1] based on Celera's most recent genome assembly (Release 13) [29]. |
T2957 |
10707-10709 |
IN |
denotes |
In |
T2958 |
10771-10778 |
VBD |
denotes |
updated |
T2959 |
10710-10715 |
NN |
denotes |
order |
T2960 |
10716-10718 |
TO |
denotes |
to |
T2961 |
10719-10724 |
VB |
denotes |
match |
T2962 |
10725-10730 |
NNS |
denotes |
cDNAs |
T2963 |
10731-10733 |
IN |
denotes |
to |
T2964 |
10734-10739 |
PRP$ |
denotes |
their |
T2965 |
10748-10760 |
NNS |
denotes |
counterparts |
T2966 |
10740-10747 |
JJ |
denotes |
genomic |
T2967 |
10760-10762 |
, |
denotes |
, |
T2968 |
10762-10767 |
RB |
denotes |
first |
T2969 |
10768-10770 |
PRP |
denotes |
we |
T2970 |
10779-10782 |
PRP$ |
denotes |
our |
T2971 |
10783-10790 |
NN |
denotes |
catalog |
T2972 |
10791-10793 |
IN |
denotes |
of |
T2973 |
10794-10799 |
NN |
denotes |
mouse |
T2974 |
10819-10824 |
NNS |
denotes |
genes |
T2975 |
10800-10809 |
JJ |
denotes |
olfactory |
T2976 |
10810-10818 |
NN |
denotes |
receptor |
T2977 |
10825-10826 |
-LRB- |
denotes |
[ |
T2978 |
10826-10827 |
CD |
denotes |
1 |
T2979 |
10827-10828 |
-RRB- |
denotes |
] |
T2980 |
10829-10834 |
VBN |
denotes |
based |
T2981 |
10835-10837 |
IN |
denotes |
on |
T2982 |
10838-10844 |
NNP |
denotes |
Celera |
T2983 |
10866-10874 |
NN |
denotes |
assembly |
T2984 |
10844-10846 |
POS |
denotes |
's |
T2985 |
10847-10851 |
RBS |
denotes |
most |
T2986 |
10852-10858 |
JJ |
denotes |
recent |
T2987 |
10859-10865 |
NN |
denotes |
genome |
T2988 |
10875-10876 |
-LRB- |
denotes |
( |
T2989 |
10876-10883 |
NN |
denotes |
Release |
T2990 |
10884-10886 |
CD |
denotes |
13 |
T2991 |
10886-10887 |
-RRB- |
denotes |
) |
T2992 |
10888-10889 |
-LRB- |
denotes |
[ |
T2993 |
10889-10891 |
CD |
denotes |
29 |
T2994 |
10891-10892 |
-RRB- |
denotes |
] |
T2995 |
10892-10893 |
. |
denotes |
. |
T2996 |
10893-10998 |
sentence |
denotes |
Previous reports of the mouse olfactory receptor repertoire [1,2] were based on the Release 12 assembly. |
T2997 |
10894-10902 |
JJ |
denotes |
Previous |
T2998 |
10903-10910 |
NNS |
denotes |
reports |
T2999 |
10965-10970 |
VBN |
denotes |
based |
T3000 |
10911-10913 |
IN |
denotes |
of |
T3001 |
10914-10917 |
DT |
denotes |
the |
T3002 |
10943-10953 |
NN |
denotes |
repertoire |
T3003 |
10918-10923 |
NN |
denotes |
mouse |
T3004 |
10934-10942 |
NN |
denotes |
receptor |
T3005 |
10924-10933 |
JJ |
denotes |
olfactory |
T3006 |
10954-10955 |
-LRB- |
denotes |
[ |
T3007 |
10957-10958 |
CD |
denotes |
2 |
T3008 |
10955-10956 |
CD |
denotes |
1 |
T3009 |
10956-10957 |
, |
denotes |
, |
T3010 |
10958-10959 |
-RRB- |
denotes |
] |
T3011 |
10960-10964 |
VBD |
denotes |
were |
T3012 |
10971-10973 |
IN |
denotes |
on |
T3013 |
10974-10977 |
DT |
denotes |
the |
T3014 |
10989-10997 |
NN |
denotes |
assembly |
T3015 |
10978-10985 |
NN |
denotes |
Release |
T3016 |
10986-10988 |
CD |
denotes |
12 |
T3017 |
10997-10998 |
. |
denotes |
. |
T3018 |
10998-11102 |
sentence |
denotes |
Release 13 consists of fewer, longer scaffold sequences containing fewer, smaller gaps than Release 12. |
T3019 |
10999-11006 |
NN |
denotes |
Release |
T3020 |
11010-11018 |
VBZ |
denotes |
consists |
T3021 |
11007-11009 |
CD |
denotes |
13 |
T3022 |
11019-11021 |
IN |
denotes |
of |
T3023 |
11022-11027 |
JJR |
denotes |
fewer |
T3024 |
11029-11035 |
JJR |
denotes |
longer |
T3025 |
11027-11029 |
, |
denotes |
, |
T3026 |
11045-11054 |
NNS |
denotes |
sequences |
T3027 |
11036-11044 |
NN |
denotes |
scaffold |
T3028 |
11055-11065 |
VBG |
denotes |
containing |
T3029 |
11066-11071 |
JJR |
denotes |
fewer |
T3030 |
11073-11080 |
JJR |
denotes |
smaller |
T3031 |
11071-11073 |
, |
denotes |
, |
T3032 |
11081-11085 |
NNS |
denotes |
gaps |
T3033 |
11086-11090 |
IN |
denotes |
than |
T3034 |
11091-11098 |
NN |
denotes |
Release |
T3035 |
11099-11101 |
CD |
denotes |
12 |
T3036 |
11101-11102 |
. |
denotes |
. |
T3037 |
11102-11437 |
sentence |
denotes |
Using the BLAST-based methods detailed previously [1], we identified 1,490 olfactory receptor sequences in the new assembly, including 1,107 intact olfactory receptor genes (compared to 866 intact olfactory receptors in the old assembly) reflecting the reduced sequence error rate and increased coverage of the new assembly (Table 1). |
T3038 |
11103-11108 |
VBG |
denotes |
Using |
T3039 |
11161-11171 |
VBD |
denotes |
identified |
T3040 |
11109-11112 |
DT |
denotes |
the |
T3041 |
11125-11132 |
NNS |
denotes |
methods |
T3042 |
11113-11118 |
NN |
denotes |
BLAST |
T3043 |
11119-11124 |
VBN |
denotes |
based |
T3044 |
11118-11119 |
HYPH |
denotes |
- |
T3045 |
11133-11141 |
VBN |
denotes |
detailed |
T3046 |
11142-11152 |
RB |
denotes |
previously |
T3047 |
11153-11154 |
-LRB- |
denotes |
[ |
T3048 |
11154-11155 |
CD |
denotes |
1 |
T3049 |
11155-11156 |
-RRB- |
denotes |
] |
T3050 |
11156-11158 |
, |
denotes |
, |
T3051 |
11158-11160 |
PRP |
denotes |
we |
T3052 |
11172-11177 |
CD |
denotes |
1,490 |
T3053 |
11197-11206 |
NNS |
denotes |
sequences |
T3054 |
11178-11187 |
JJ |
denotes |
olfactory |
T3055 |
11188-11196 |
NN |
denotes |
receptor |
T3056 |
11207-11209 |
IN |
denotes |
in |
T3057 |
11210-11213 |
DT |
denotes |
the |
T3058 |
11218-11226 |
NN |
denotes |
assembly |
T3059 |
11214-11217 |
JJ |
denotes |
new |
T3060 |
11226-11228 |
, |
denotes |
, |
T3061 |
11228-11237 |
VBG |
denotes |
including |
T3062 |
11238-11243 |
CD |
denotes |
1,107 |
T3063 |
11270-11275 |
NNS |
denotes |
genes |
T3064 |
11244-11250 |
JJ |
denotes |
intact |
T3065 |
11251-11260 |
JJ |
denotes |
olfactory |
T3066 |
11261-11269 |
NN |
denotes |
receptor |
T3067 |
11276-11277 |
-LRB- |
denotes |
( |
T3068 |
11277-11285 |
VBN |
denotes |
compared |
T3069 |
11286-11288 |
IN |
denotes |
to |
T3070 |
11289-11292 |
CD |
denotes |
866 |
T3071 |
11310-11319 |
NNS |
denotes |
receptors |
T3072 |
11293-11299 |
JJ |
denotes |
intact |
T3073 |
11300-11309 |
JJ |
denotes |
olfactory |
T3074 |
11320-11322 |
IN |
denotes |
in |
T3075 |
11323-11326 |
DT |
denotes |
the |
T3076 |
11331-11339 |
NN |
denotes |
assembly |
T3077 |
11327-11330 |
JJ |
denotes |
old |
T3078 |
11339-11340 |
-RRB- |
denotes |
) |
T3079 |
11341-11351 |
VBG |
denotes |
reflecting |
T3080 |
11352-11355 |
DT |
denotes |
the |
T3081 |
11379-11383 |
NN |
denotes |
rate |
T3082 |
11356-11363 |
VBN |
denotes |
reduced |
T3083 |
11364-11372 |
NN |
denotes |
sequence |
T3084 |
11373-11378 |
NN |
denotes |
error |
T3085 |
11384-11387 |
CC |
denotes |
and |
T3086 |
11388-11397 |
VBN |
denotes |
increased |
T3087 |
11398-11406 |
NN |
denotes |
coverage |
T3088 |
11407-11409 |
IN |
denotes |
of |
T3089 |
11410-11413 |
DT |
denotes |
the |
T3090 |
11418-11426 |
NN |
denotes |
assembly |
T3091 |
11414-11417 |
JJ |
denotes |
new |
T3092 |
11427-11428 |
-LRB- |
denotes |
( |
T3093 |
11428-11433 |
NN |
denotes |
Table |
T3094 |
11434-11435 |
CD |
denotes |
1 |
T3095 |
11435-11436 |
-RRB- |
denotes |
) |
T3096 |
11436-11437 |
. |
denotes |
. |
T3142 |
11678-11680 |
IN |
denotes |
to |
T3143 |
11681-11691 |
JJ |
denotes |
individual |
T3097 |
11437-11657 |
sentence |
denotes |
We created a local database of genomic sequences including all olfactory receptor loci and 0.5 Mb flanking sequences (if available) and compared each cDNA sequence to this 'olfactory subgenome' database using sim4 [30]. |
T3098 |
11438-11440 |
PRP |
denotes |
We |
T3099 |
11441-11448 |
VBD |
denotes |
created |
T3100 |
11449-11450 |
DT |
denotes |
a |
T3101 |
11457-11465 |
NN |
denotes |
database |
T3102 |
11451-11456 |
JJ |
denotes |
local |
T3103 |
11466-11468 |
IN |
denotes |
of |
T3104 |
11469-11476 |
JJ |
denotes |
genomic |
T3105 |
11477-11486 |
NNS |
denotes |
sequences |
T3106 |
11487-11496 |
VBG |
denotes |
including |
T3107 |
11497-11500 |
DT |
denotes |
all |
T3108 |
11520-11524 |
NNS |
denotes |
loci |
T3109 |
11501-11510 |
JJ |
denotes |
olfactory |
T3110 |
11511-11519 |
NN |
denotes |
receptor |
T3111 |
11525-11528 |
CC |
denotes |
and |
T3112 |
11529-11532 |
CD |
denotes |
0.5 |
T3113 |
11533-11535 |
NN |
denotes |
Mb |
T3114 |
11545-11554 |
NNS |
denotes |
sequences |
T3115 |
11536-11544 |
NN |
denotes |
flanking |
T3116 |
11555-11556 |
-LRB- |
denotes |
( |
T3117 |
11559-11568 |
JJ |
denotes |
available |
T3118 |
11556-11558 |
IN |
denotes |
if |
T3119 |
11568-11569 |
-RRB- |
denotes |
) |
T3120 |
11570-11573 |
CC |
denotes |
and |
T3121 |
11574-11582 |
VBN |
denotes |
compared |
T3122 |
11583-11587 |
DT |
denotes |
each |
T3123 |
11593-11601 |
NN |
denotes |
sequence |
T3124 |
11588-11592 |
NN |
denotes |
cDNA |
T3125 |
11602-11604 |
IN |
denotes |
to |
T3126 |
11605-11609 |
DT |
denotes |
this |
T3127 |
11632-11640 |
NN |
denotes |
database |
T3128 |
11610-11611 |
`` |
denotes |
' |
T3129 |
11611-11620 |
JJ |
denotes |
olfactory |
T3130 |
11621-11630 |
NN |
denotes |
subgenome |
T3131 |
11630-11631 |
'' |
denotes |
' |
T3132 |
11641-11646 |
VBG |
denotes |
using |
T3133 |
11647-11651 |
NN |
denotes |
sim4 |
T3134 |
11652-11653 |
-LRB- |
denotes |
[ |
T3135 |
11653-11655 |
CD |
denotes |
30 |
T3136 |
11655-11656 |
-RRB- |
denotes |
] |
T3137 |
11656-11657 |
. |
denotes |
. |
T3138 |
11657-11814 |
sentence |
denotes |
cDNAs were assigned to individual genes based on their best match to an olfactory receptor coding region or its upstream region (see Materials and methods). |
T3139 |
11658-11663 |
NNS |
denotes |
cDNAs |
T3140 |
11669-11677 |
VBN |
denotes |
assigned |
T3141 |
11664-11668 |
VBD |
denotes |
were |
T3144 |
11692-11697 |
NNS |
denotes |
genes |
T3145 |
11698-11703 |
VBN |
denotes |
based |
T3146 |
11704-11706 |
IN |
denotes |
on |
T3147 |
11707-11712 |
PRP$ |
denotes |
their |
T3148 |
11718-11723 |
NN |
denotes |
match |
T3149 |
11713-11717 |
JJS |
denotes |
best |
T3150 |
11724-11726 |
IN |
denotes |
to |
T3151 |
11727-11729 |
DT |
denotes |
an |
T3152 |
11756-11762 |
NN |
denotes |
region |
T3153 |
11730-11739 |
JJ |
denotes |
olfactory |
T3154 |
11740-11748 |
NN |
denotes |
receptor |
T3155 |
11749-11755 |
NN |
denotes |
coding |
T3156 |
11763-11765 |
CC |
denotes |
or |
T3157 |
11766-11769 |
PRP$ |
denotes |
its |
T3158 |
11779-11785 |
NN |
denotes |
region |
T3159 |
11770-11778 |
JJ |
denotes |
upstream |
T3160 |
11786-11787 |
-LRB- |
denotes |
( |
T3161 |
11787-11790 |
VB |
denotes |
see |
T3162 |
11791-11800 |
NNS |
denotes |
Materials |
T3163 |
11801-11804 |
CC |
denotes |
and |
T3164 |
11805-11812 |
NNS |
denotes |
methods |
T3165 |
11812-11813 |
-RRB- |
denotes |
) |
T3166 |
11813-11814 |
. |
denotes |
. |
T3167 |
11814-12105 |
sentence |
denotes |
Of the 1,264 olfactory receptor cDNAs, 1,176 matched a total of 419 olfactory receptor genes; the remaining cDNAs either matched an olfactory receptor below our 96% nucleotide identity threshold or had ambiguous matches encompassing more than one olfactory receptor gene region (see below). |
T3168 |
11815-11817 |
IN |
denotes |
Of |
T3169 |
11860-11867 |
VBD |
denotes |
matched |
T3170 |
11818-11821 |
DT |
denotes |
the |
T3171 |
11847-11852 |
NNS |
denotes |
cDNAs |
T3172 |
11822-11827 |
CD |
denotes |
1,264 |
T3173 |
11828-11837 |
JJ |
denotes |
olfactory |
T3174 |
11838-11846 |
NN |
denotes |
receptor |
T3175 |
11852-11854 |
, |
denotes |
, |
T3176 |
11854-11859 |
CD |
denotes |
1,176 |
T3177 |
11936-11943 |
VBD |
denotes |
matched |
T3178 |
11868-11869 |
DT |
denotes |
a |
T3179 |
11870-11875 |
NN |
denotes |
total |
T3180 |
11876-11878 |
IN |
denotes |
of |
T3181 |
11879-11882 |
CD |
denotes |
419 |
T3182 |
11902-11907 |
NNS |
denotes |
genes |
T3183 |
11883-11892 |
JJ |
denotes |
olfactory |
T3184 |
11893-11901 |
NN |
denotes |
receptor |
T3185 |
11907-11908 |
: |
denotes |
; |
T3186 |
11909-11912 |
DT |
denotes |
the |
T3187 |
11923-11928 |
NNS |
denotes |
cDNAs |
T3188 |
11913-11922 |
VBG |
denotes |
remaining |
T3189 |
11929-11935 |
CC |
denotes |
either |
T3190 |
11944-11946 |
DT |
denotes |
an |
T3191 |
11957-11965 |
NN |
denotes |
receptor |
T3192 |
11947-11956 |
JJ |
denotes |
olfactory |
T3193 |
11966-11971 |
IN |
denotes |
below |
T3194 |
11972-11975 |
PRP$ |
denotes |
our |
T3195 |
12000-12009 |
NN |
denotes |
threshold |
T3196 |
11976-11978 |
CD |
denotes |
96 |
T3197 |
11978-11979 |
NN |
denotes |
% |
T3198 |
11991-11999 |
NN |
denotes |
identity |
T3199 |
11980-11990 |
NN |
denotes |
nucleotide |
T3200 |
12010-12012 |
CC |
denotes |
or |
T3201 |
12013-12016 |
VBD |
denotes |
had |
T3202 |
12017-12026 |
JJ |
denotes |
ambiguous |
T3203 |
12027-12034 |
NNS |
denotes |
matches |
T3204 |
12035-12047 |
VBG |
denotes |
encompassing |
T3205 |
12048-12052 |
JJR |
denotes |
more |
T3206 |
12058-12061 |
CD |
denotes |
one |
T3207 |
12053-12057 |
IN |
denotes |
than |
T3208 |
12086-12092 |
NN |
denotes |
region |
T3209 |
12062-12071 |
JJ |
denotes |
olfactory |
T3210 |
12072-12080 |
NN |
denotes |
receptor |
T3211 |
12081-12085 |
NN |
denotes |
gene |
T3212 |
12093-12094 |
-LRB- |
denotes |
( |
T3213 |
12094-12097 |
VB |
denotes |
see |
T3214 |
12098-12103 |
RB |
denotes |
below |
T3215 |
12103-12104 |
-RRB- |
denotes |
) |
T3216 |
12104-12105 |
. |
denotes |
. |
T3520 |
12107-12108 |
DT |
denotes |
A |
T3521 |
12147-12153 |
NN |
denotes |
primer |
T3522 |
12109-12114 |
NN |
denotes |
class |
T3523 |
12115-12116 |
CD |
denotes |
I |
T3524 |
12117-12126 |
JJ |
denotes |
olfactory |
T3525 |
12127-12135 |
NN |
denotes |
receptor |
T3526 |
12136-12146 |
JJ |
denotes |
degenerate |
T3527 |
12154-12162 |
VBZ |
denotes |
broadens |
T3528 |
12163-12175 |
JJ |
denotes |
phylogenetic |
T3529 |
12176-12188 |
NN |
denotes |
distribution |
T3530 |
12189-12191 |
IN |
denotes |
of |
T3531 |
12192-12201 |
VBN |
denotes |
confirmed |
T3532 |
12221-12226 |
NNS |
denotes |
genes |
T3533 |
12202-12211 |
JJ |
denotes |
olfactory |
T3534 |
12212-12220 |
NN |
denotes |
receptor |
T3535 |
12226-12490 |
sentence |
denotes |
Previous analyses of the mammalian olfactory receptor family define two major phylogenetic clades, referred to as class I and II olfactory receptors, and suggest that class I olfactory receptors are more similar to fish olfactory receptors than are class IIs [5]. |
T3536 |
12227-12235 |
JJ |
denotes |
Previous |
T3537 |
12236-12244 |
NNS |
denotes |
analyses |
T3538 |
12288-12294 |
VBZ |
denotes |
define |
T3539 |
12245-12247 |
IN |
denotes |
of |
T3540 |
12248-12251 |
DT |
denotes |
the |
T3541 |
12281-12287 |
NN |
denotes |
family |
T3542 |
12252-12261 |
JJ |
denotes |
mammalian |
T3543 |
12262-12271 |
JJ |
denotes |
olfactory |
T3544 |
12272-12280 |
NN |
denotes |
receptor |
T3545 |
12295-12298 |
CD |
denotes |
two |
T3546 |
12318-12324 |
NNS |
denotes |
clades |
T3547 |
12299-12304 |
JJ |
denotes |
major |
T3548 |
12305-12317 |
JJ |
denotes |
phylogenetic |
T3549 |
12324-12326 |
, |
denotes |
, |
T3550 |
12326-12334 |
VBN |
denotes |
referred |
T3551 |
12335-12337 |
IN |
denotes |
to |
T3552 |
12338-12340 |
IN |
denotes |
as |
T3553 |
12341-12346 |
NN |
denotes |
class |
T3554 |
12347-12348 |
CD |
denotes |
I |
T3555 |
12366-12375 |
NNS |
denotes |
receptors |
T3556 |
12349-12352 |
CC |
denotes |
and |
T3557 |
12353-12355 |
CD |
denotes |
II |
T3558 |
12356-12365 |
JJ |
denotes |
olfactory |
T3559 |
12375-12377 |
, |
denotes |
, |
T3560 |
12377-12380 |
CC |
denotes |
and |
T3561 |
12381-12388 |
VBP |
denotes |
suggest |
T3562 |
12389-12393 |
IN |
denotes |
that |
T3563 |
12422-12425 |
VBP |
denotes |
are |
T3564 |
12394-12399 |
NN |
denotes |
class |
T3565 |
12412-12421 |
NNS |
denotes |
receptors |
T3566 |
12400-12401 |
CD |
denotes |
I |
T3567 |
12402-12411 |
JJ |
denotes |
olfactory |
T3568 |
12426-12430 |
RBR |
denotes |
more |
T3569 |
12431-12438 |
JJ |
denotes |
similar |
T3570 |
12439-12441 |
IN |
denotes |
to |
T3571 |
12442-12446 |
NN |
denotes |
fish |
T3572 |
12457-12466 |
NNS |
denotes |
receptors |
T3573 |
12447-12456 |
JJ |
denotes |
olfactory |
T3574 |
12467-12471 |
IN |
denotes |
than |
T3575 |
12472-12475 |
VBP |
denotes |
are |
T3576 |
12476-12481 |
NN |
denotes |
class |
T3577 |
12482-12485 |
NNS |
denotes |
IIs |
T3578 |
12486-12487 |
-LRB- |
denotes |
[ |
T3579 |
12487-12488 |
CD |
denotes |
5 |
T3580 |
12488-12489 |
-RRB- |
denotes |
] |
T3581 |
12489-12490 |
. |
denotes |
. |
T3582 |
12490-12849 |
sentence |
denotes |
Figure 1 illustrates the phylogenetic diversity of our cDNA collection, showing that we have confirmed expression of at least one olfactory receptor gene in each major clade of the class II olfactory receptor genes, or 391 out of 983 (40%) of all intact class II olfactory receptor genes where full-length genomic sequence data are available (blue branches). |
T3583 |
12491-12497 |
NN |
denotes |
Figure |
T3584 |
12500-12511 |
VBZ |
denotes |
illustrates |
T3585 |
12498-12499 |
CD |
denotes |
1 |
T3586 |
12512-12515 |
DT |
denotes |
the |
T3587 |
12529-12538 |
NN |
denotes |
diversity |
T3588 |
12516-12528 |
JJ |
denotes |
phylogenetic |
T3589 |
12539-12541 |
IN |
denotes |
of |
T3590 |
12542-12545 |
PRP$ |
denotes |
our |
T3591 |
12551-12561 |
NN |
denotes |
collection |
T3592 |
12546-12550 |
NN |
denotes |
cDNA |
T3593 |
12561-12563 |
, |
denotes |
, |
T3594 |
12563-12570 |
VBG |
denotes |
showing |
T3595 |
12571-12575 |
IN |
denotes |
that |
T3596 |
12584-12593 |
VBN |
denotes |
confirmed |
T3597 |
12576-12578 |
PRP |
denotes |
we |
T3598 |
12579-12583 |
VBP |
denotes |
have |
T3599 |
12594-12604 |
NN |
denotes |
expression |
T3600 |
12605-12607 |
IN |
denotes |
of |
T3601 |
12608-12610 |
RB |
denotes |
at |
T3602 |
12617-12620 |
CD |
denotes |
one |
T3603 |
12611-12616 |
RBS |
denotes |
least |
T3604 |
12640-12644 |
NN |
denotes |
gene |
T3605 |
12621-12630 |
JJ |
denotes |
olfactory |
T3606 |
12631-12639 |
NN |
denotes |
receptor |
T3607 |
12645-12647 |
IN |
denotes |
in |
T3608 |
12648-12652 |
DT |
denotes |
each |
T3609 |
12659-12664 |
NN |
denotes |
clade |
T3610 |
12653-12658 |
JJ |
denotes |
major |
T3611 |
12665-12667 |
IN |
denotes |
of |
T3612 |
12668-12671 |
DT |
denotes |
the |
T3613 |
12700-12705 |
NNS |
denotes |
genes |
T3614 |
12672-12677 |
NN |
denotes |
class |
T3615 |
12678-12680 |
CD |
denotes |
II |
T3616 |
12681-12690 |
JJ |
denotes |
olfactory |
T3617 |
12691-12699 |
NN |
denotes |
receptor |
T3618 |
12705-12707 |
, |
denotes |
, |
T3619 |
12707-12709 |
CC |
denotes |
or |
T3620 |
12710-12713 |
CD |
denotes |
391 |
T3621 |
12721-12724 |
CD |
denotes |
983 |
T3622 |
12714-12717 |
IN |
denotes |
out |
T3623 |
12718-12720 |
IN |
denotes |
of |
T3624 |
12725-12726 |
-LRB- |
denotes |
( |
T3625 |
12728-12729 |
NN |
denotes |
% |
T3626 |
12726-12728 |
CD |
denotes |
40 |
T3627 |
12729-12730 |
-RRB- |
denotes |
) |
T3628 |
12731-12733 |
IN |
denotes |
of |
T3629 |
12734-12737 |
DT |
denotes |
all |
T3630 |
12773-12778 |
NNS |
denotes |
genes |
T3631 |
12738-12744 |
JJ |
denotes |
intact |
T3632 |
12745-12750 |
NN |
denotes |
class |
T3633 |
12751-12753 |
CD |
denotes |
II |
T3634 |
12754-12763 |
JJ |
denotes |
olfactory |
T3635 |
12764-12772 |
NN |
denotes |
receptor |
T3636 |
12779-12784 |
WRB |
denotes |
where |
T3637 |
12819-12822 |
VBP |
denotes |
are |
T3638 |
12785-12789 |
JJ |
denotes |
full |
T3639 |
12790-12796 |
NN |
denotes |
length |
T3640 |
12789-12790 |
HYPH |
denotes |
- |
T3641 |
12814-12818 |
NNS |
denotes |
data |
T3642 |
12797-12804 |
JJ |
denotes |
genomic |
T3643 |
12805-12813 |
NN |
denotes |
sequence |
T3644 |
12823-12832 |
JJ |
denotes |
available |
T3645 |
12833-12834 |
-LRB- |
denotes |
( |
T3646 |
12839-12847 |
NNS |
denotes |
branches |
T3647 |
12834-12838 |
JJ |
denotes |
blue |
T3648 |
12847-12848 |
-RRB- |
denotes |
) |
T3649 |
12848-12849 |
. |
denotes |
. |
T3650 |
12849-12942 |
sentence |
denotes |
The screen thus appears relatively unbiased in its coverage of class II olfactory receptors. |
T3651 |
12850-12853 |
DT |
denotes |
The |
T3652 |
12854-12860 |
NN |
denotes |
screen |
T3653 |
12866-12873 |
VBZ |
denotes |
appears |
T3654 |
12861-12865 |
RB |
denotes |
thus |
T3655 |
12874-12884 |
RB |
denotes |
relatively |
T3656 |
12885-12893 |
JJ |
denotes |
unbiased |
T3657 |
12894-12896 |
IN |
denotes |
in |
T3658 |
12897-12900 |
PRP$ |
denotes |
its |
T3659 |
12901-12909 |
NN |
denotes |
coverage |
T3660 |
12910-12912 |
IN |
denotes |
of |
T3661 |
12913-12918 |
NN |
denotes |
class |
T3662 |
12932-12941 |
NNS |
denotes |
receptors |
T3663 |
12919-12921 |
CD |
denotes |
II |
T3664 |
12922-12931 |
JJ |
denotes |
olfactory |
T3665 |
12941-12942 |
. |
denotes |
. |
T3666 |
12942-13057 |
sentence |
denotes |
However, our random screen provided cDNAs for only two out of 124 intact, full-length class I olfactory receptors. |
T3667 |
12943-12950 |
RB |
denotes |
However |
T3668 |
12970-12978 |
VBD |
denotes |
provided |
T3669 |
12950-12952 |
, |
denotes |
, |
T3670 |
12952-12955 |
PRP$ |
denotes |
our |
T3671 |
12963-12969 |
NN |
denotes |
screen |
T3672 |
12956-12962 |
JJ |
denotes |
random |
T3673 |
12979-12984 |
NNS |
denotes |
cDNAs |
T3674 |
12985-12988 |
IN |
denotes |
for |
T3675 |
12989-12993 |
RB |
denotes |
only |
T3676 |
13005-13008 |
CD |
denotes |
124 |
T3677 |
12994-12997 |
CD |
denotes |
two |
T3678 |
12998-13001 |
IN |
denotes |
out |
T3679 |
13002-13004 |
IN |
denotes |
of |
T3680 |
13047-13056 |
NNS |
denotes |
receptors |
T3681 |
13009-13015 |
JJ |
denotes |
intact |
T3682 |
13015-13017 |
, |
denotes |
, |
T3683 |
13017-13021 |
JJ |
denotes |
full |
T3684 |
13022-13028 |
NN |
denotes |
length |
T3685 |
13021-13022 |
HYPH |
denotes |
- |
T3686 |
13029-13034 |
NN |
denotes |
class |
T3687 |
13035-13036 |
CD |
denotes |
I |
T3688 |
13037-13046 |
JJ |
denotes |
olfactory |
T3689 |
13056-13057 |
. |
denotes |
. |
T3690 |
13057-13240 |
sentence |
denotes |
In an attempt to broaden the phylogenetic coverage of our hybridization screen, we used additional degenerate probes on the adult library and screened an embryonic library (Table 2). |
T3691 |
13058-13060 |
IN |
denotes |
In |
T3692 |
13141-13145 |
VBD |
denotes |
used |
T3693 |
13061-13063 |
DT |
denotes |
an |
T3694 |
13064-13071 |
NN |
denotes |
attempt |
T3695 |
13072-13074 |
TO |
denotes |
to |
T3696 |
13075-13082 |
VB |
denotes |
broaden |
T3697 |
13083-13086 |
DT |
denotes |
the |
T3698 |
13100-13108 |
NN |
denotes |
coverage |
T3699 |
13087-13099 |
JJ |
denotes |
phylogenetic |
T3700 |
13109-13111 |
IN |
denotes |
of |
T3701 |
13112-13115 |
PRP$ |
denotes |
our |
T3702 |
13130-13136 |
NN |
denotes |
screen |
T3703 |
13116-13129 |
NN |
denotes |
hybridization |
T3704 |
13136-13138 |
, |
denotes |
, |
T3705 |
13138-13140 |
PRP |
denotes |
we |
T3706 |
13146-13156 |
JJ |
denotes |
additional |
T3707 |
13168-13174 |
NNS |
denotes |
probes |
T3708 |
13157-13167 |
JJ |
denotes |
degenerate |
T3709 |
13175-13177 |
IN |
denotes |
on |
T3710 |
13178-13181 |
DT |
denotes |
the |
T3711 |
13188-13195 |
NN |
denotes |
library |
T3712 |
13182-13187 |
JJ |
denotes |
adult |
T3713 |
13196-13199 |
CC |
denotes |
and |
T3714 |
13200-13208 |
VBD |
denotes |
screened |
T3715 |
13209-13211 |
DT |
denotes |
an |
T3716 |
13222-13229 |
NN |
denotes |
library |
T3717 |
13212-13221 |
JJ |
denotes |
embryonic |
T3718 |
13230-13231 |
-LRB- |
denotes |
( |
T3719 |
13231-13236 |
NN |
denotes |
Table |
T3720 |
13237-13238 |
CD |
denotes |
2 |
T3721 |
13238-13239 |
-RRB- |
denotes |
) |
T3722 |
13239-13240 |
. |
denotes |
. |
T3723 |
13240-13323 |
sentence |
denotes |
These experiments did not increase the diversity of clones identified (not shown). |
T3724 |
13241-13246 |
DT |
denotes |
These |
T3725 |
13247-13258 |
NNS |
denotes |
experiments |
T3726 |
13267-13275 |
VB |
denotes |
increase |
T3727 |
13259-13262 |
VBD |
denotes |
did |
T3728 |
13263-13266 |
RB |
denotes |
not |
T3729 |
13276-13279 |
DT |
denotes |
the |
T3730 |
13280-13289 |
NN |
denotes |
diversity |
T3731 |
13290-13292 |
IN |
denotes |
of |
T3732 |
13293-13299 |
NNS |
denotes |
clones |
T3733 |
13300-13310 |
VBN |
denotes |
identified |
T3734 |
13311-13312 |
-LRB- |
denotes |
( |
T3735 |
13316-13321 |
VBN |
denotes |
shown |
T3736 |
13312-13315 |
RB |
denotes |
not |
T3737 |
13321-13322 |
-RRB- |
denotes |
) |
T3738 |
13322-13323 |
. |
denotes |
. |
T3739 |
13323-13476 |
sentence |
denotes |
This severe class I underrepresentation could be due to experimental bias - a consequence of using degenerate primers to create our hybridization probe. |
T3740 |
13324-13328 |
DT |
denotes |
This |
T3741 |
13344-13363 |
NN |
denotes |
underrepresentation |
T3742 |
13329-13335 |
JJ |
denotes |
severe |
T3743 |
13336-13341 |
NN |
denotes |
class |
T3744 |
13342-13343 |
CD |
denotes |
I |
T3745 |
13370-13372 |
VB |
denotes |
be |
T3746 |
13364-13369 |
MD |
denotes |
could |
T3747 |
13373-13376 |
IN |
denotes |
due |
T3748 |
13377-13379 |
IN |
denotes |
to |
T3749 |
13380-13392 |
JJ |
denotes |
experimental |
T3750 |
13393-13397 |
NN |
denotes |
bias |
T3751 |
13398-13399 |
: |
denotes |
- |
T3752 |
13400-13401 |
DT |
denotes |
a |
T3753 |
13402-13413 |
NN |
denotes |
consequence |
T3754 |
13414-13416 |
IN |
denotes |
of |
T3755 |
13417-13422 |
VBG |
denotes |
using |
T3756 |
13423-13433 |
JJ |
denotes |
degenerate |
T3757 |
13434-13441 |
NNS |
denotes |
primers |
T3758 |
13442-13444 |
TO |
denotes |
to |
T3759 |
13445-13451 |
VB |
denotes |
create |
T3760 |
13452-13455 |
PRP$ |
denotes |
our |
T3761 |
13470-13475 |
NN |
denotes |
probe |
T3762 |
13456-13469 |
NN |
denotes |
hybridization |
T3763 |
13475-13476 |
. |
denotes |
. |
T3764 |
13476-13577 |
sentence |
denotes |
Alternatively, class I genes might be expressed at extremely low levels in the olfactory epithelium. |
T3765 |
13477-13490 |
RB |
denotes |
Alternatively |
T3766 |
13515-13524 |
VBN |
denotes |
expressed |
T3767 |
13490-13492 |
, |
denotes |
, |
T3768 |
13492-13497 |
NN |
denotes |
class |
T3769 |
13500-13505 |
NNS |
denotes |
genes |
T3770 |
13498-13499 |
CD |
denotes |
I |
T3771 |
13506-13511 |
MD |
denotes |
might |
T3772 |
13512-13514 |
VB |
denotes |
be |
T3773 |
13525-13527 |
IN |
denotes |
at |
T3774 |
13528-13537 |
RB |
denotes |
extremely |
T3775 |
13538-13541 |
JJ |
denotes |
low |
T3776 |
13542-13548 |
NNS |
denotes |
levels |
T3777 |
13549-13551 |
IN |
denotes |
in |
T3778 |
13552-13555 |
DT |
denotes |
the |
T3779 |
13566-13576 |
NN |
denotes |
epithelium |
T3780 |
13556-13565 |
JJ |
denotes |
olfactory |
T3781 |
13576-13577 |
. |
denotes |
. |
T3782 |
13577-13850 |
sentence |
denotes |
In order to determine whether class I olfactory receptors are expressed in the olfactory epithelium, we designed a reverse-strand degenerate primer to recognize a motif in transmembrane domain 7 (PP{V/M/A/T}{F/L/I/M}NP) enriched among class I olfactory receptor sequences. |
T3783 |
13578-13580 |
IN |
denotes |
In |
T3784 |
13682-13690 |
VBD |
denotes |
designed |
T3785 |
13581-13586 |
NN |
denotes |
order |
T3786 |
13587-13589 |
TO |
denotes |
to |
T3787 |
13590-13599 |
VB |
denotes |
determine |
T3788 |
13600-13607 |
IN |
denotes |
whether |
T3789 |
13640-13649 |
VBN |
denotes |
expressed |
T3790 |
13608-13613 |
NN |
denotes |
class |
T3791 |
13626-13635 |
NNS |
denotes |
receptors |
T3792 |
13614-13615 |
CD |
denotes |
I |
T3793 |
13616-13625 |
JJ |
denotes |
olfactory |
T3794 |
13636-13639 |
VBP |
denotes |
are |
T3795 |
13650-13652 |
IN |
denotes |
in |
T3796 |
13653-13656 |
DT |
denotes |
the |
T3797 |
13667-13677 |
NN |
denotes |
epithelium |
T3798 |
13657-13666 |
JJ |
denotes |
olfactory |
T3799 |
13677-13679 |
, |
denotes |
, |
T3800 |
13679-13681 |
PRP |
denotes |
we |
T3801 |
13691-13692 |
DT |
denotes |
a |
T3802 |
13719-13725 |
NN |
denotes |
primer |
T3803 |
13693-13700 |
JJ |
denotes |
reverse |
T3804 |
13701-13707 |
NN |
denotes |
strand |
T3805 |
13700-13701 |
HYPH |
denotes |
- |
T3806 |
13708-13718 |
JJ |
denotes |
degenerate |
T3807 |
13726-13728 |
TO |
denotes |
to |
T3808 |
13729-13738 |
VB |
denotes |
recognize |
T3809 |
13739-13740 |
DT |
denotes |
a |
T3810 |
13741-13746 |
NN |
denotes |
motif |
T3811 |
13747-13749 |
IN |
denotes |
in |
T3812 |
13750-13763 |
NN |
denotes |
transmembrane |
T3813 |
13764-13770 |
NN |
denotes |
domain |
T3814 |
13771-13772 |
CD |
denotes |
7 |
T3815 |
13773-13774 |
-LRB- |
denotes |
( |
T3816 |
13794-13796 |
NN |
denotes |
NP |
T3817 |
13774-13776 |
NN |
denotes |
PP |
T3818 |
13776-13777 |
-LRB- |
denotes |
{ |
T3819 |
13777-13778 |
NN |
denotes |
V |
T3820 |
13783-13784 |
NN |
denotes |
T |
T3821 |
13778-13779 |
HYPH |
denotes |
/ |
T3822 |
13779-13780 |
NN |
denotes |
M |
T3823 |
13780-13781 |
HYPH |
denotes |
/ |
T3824 |
13781-13782 |
NN |
denotes |
A |
T3825 |
13782-13783 |
HYPH |
denotes |
/ |
T3826 |
13784-13785 |
RBR |
denotes |
} |
T3827 |
13785-13786 |
-LRB- |
denotes |
{ |
T3828 |
13786-13787 |
NN |
denotes |
F |
T3829 |
13792-13793 |
NN |
denotes |
M |
T3830 |
13787-13788 |
HYPH |
denotes |
/ |
T3831 |
13788-13789 |
NN |
denotes |
L |
T3832 |
13789-13790 |
HYPH |
denotes |
/ |
T3833 |
13790-13791 |
NN |
denotes |
I |
T3834 |
13791-13792 |
HYPH |
denotes |
/ |
T3835 |
13793-13794 |
RBR |
denotes |
} |
T3836 |
13796-13797 |
-RRB- |
denotes |
) |
T3837 |
13798-13806 |
VBN |
denotes |
enriched |
T3838 |
13807-13812 |
IN |
denotes |
among |
T3839 |
13813-13818 |
NN |
denotes |
class |
T3840 |
13840-13849 |
NNS |
denotes |
sequences |
T3841 |
13819-13820 |
CD |
denotes |
I |
T3842 |
13821-13830 |
JJ |
denotes |
olfactory |
T3843 |
13831-13839 |
NN |
denotes |
receptor |
T3844 |
13849-13850 |
. |
denotes |
. |
T3845 |
13850-14077 |
sentence |
denotes |
Most of the motif is shared among all olfactory receptors, but the first proline residue (at the primer's 3' end) is found in 121 out of 124 (98%) intact class I genes compared to only 37 out of 983 (4%) intact class II genes. |
T3846 |
13851-13855 |
JJS |
denotes |
Most |
T3847 |
13872-13878 |
VBN |
denotes |
shared |
T3848 |
13856-13858 |
IN |
denotes |
of |
T3849 |
13859-13862 |
DT |
denotes |
the |
T3850 |
13863-13868 |
NN |
denotes |
motif |
T3851 |
13869-13871 |
VBZ |
denotes |
is |
T3852 |
13879-13884 |
IN |
denotes |
among |
T3853 |
13885-13888 |
DT |
denotes |
all |
T3854 |
13899-13908 |
NNS |
denotes |
receptors |
T3855 |
13889-13898 |
JJ |
denotes |
olfactory |
T3856 |
13908-13910 |
, |
denotes |
, |
T3857 |
13910-13913 |
CC |
denotes |
but |
T3858 |
13914-13917 |
DT |
denotes |
the |
T3859 |
13932-13939 |
NN |
denotes |
residue |
T3860 |
13918-13923 |
JJ |
denotes |
first |
T3861 |
13924-13931 |
NN |
denotes |
proline |
T3862 |
13968-13973 |
VBN |
denotes |
found |
T3863 |
13940-13941 |
-LRB- |
denotes |
( |
T3864 |
13941-13943 |
IN |
denotes |
at |
T3865 |
13944-13947 |
DT |
denotes |
the |
T3866 |
13948-13954 |
NN |
denotes |
primer |
T3867 |
13960-13963 |
NN |
denotes |
end |
T3868 |
13954-13956 |
POS |
denotes |
's |
T3869 |
13957-13958 |
CD |
denotes |
3 |
T3870 |
13958-13959 |
SYM |
denotes |
' |
T3871 |
13963-13964 |
-RRB- |
denotes |
) |
T3872 |
13965-13967 |
VBZ |
denotes |
is |
T3873 |
13974-13976 |
IN |
denotes |
in |
T3874 |
13977-13980 |
CD |
denotes |
121 |
T3875 |
13988-13991 |
CD |
denotes |
124 |
T3876 |
13981-13984 |
IN |
denotes |
out |
T3877 |
13985-13987 |
IN |
denotes |
of |
T3878 |
14013-14018 |
NNS |
denotes |
genes |
T3879 |
13992-13993 |
-LRB- |
denotes |
( |
T3880 |
13995-13996 |
NN |
denotes |
% |
T3881 |
13993-13995 |
CD |
denotes |
98 |
T3882 |
13996-13997 |
-RRB- |
denotes |
) |
T3883 |
13998-14004 |
JJ |
denotes |
intact |
T3884 |
14005-14010 |
NN |
denotes |
class |
T3885 |
14011-14012 |
CD |
denotes |
I |
T3886 |
14019-14027 |
VBN |
denotes |
compared |
T3887 |
14028-14030 |
IN |
denotes |
to |
T3888 |
14031-14035 |
RB |
denotes |
only |
T3889 |
14046-14049 |
CD |
denotes |
983 |
T3890 |
14036-14038 |
CD |
denotes |
37 |
T3891 |
14039-14042 |
IN |
denotes |
out |
T3892 |
14043-14045 |
IN |
denotes |
of |
T3893 |
14071-14076 |
NNS |
denotes |
genes |
T3894 |
14050-14051 |
-LRB- |
denotes |
( |
T3895 |
14052-14053 |
NN |
denotes |
% |
T3896 |
14051-14052 |
CD |
denotes |
4 |
T3897 |
14053-14054 |
-RRB- |
denotes |
) |
T3898 |
14055-14061 |
JJ |
denotes |
intact |
T3899 |
14062-14067 |
NN |
denotes |
class |
T3900 |
14068-14070 |
CD |
denotes |
II |
T3901 |
14076-14077 |
. |
denotes |
. |
T3902 |
14077-14473 |
sentence |
denotes |
When combined with another olfactory receptor degenerate primer, P26 [17], this primer preferentially amplifies class I olfactory receptors from mouse genomic DNA: of 33 sequenced, cloned PCR products, 17 represented seven different class I olfactory receptors, six represented three different class II olfactory receptors, and ten represented five different non-olfactory receptor contaminants. |
T3903 |
14078-14082 |
WRB |
denotes |
When |
T3904 |
14083-14091 |
VBN |
denotes |
combined |
T3905 |
14180-14189 |
VBZ |
denotes |
amplifies |
T3906 |
14092-14096 |
IN |
denotes |
with |
T3907 |
14097-14104 |
DT |
denotes |
another |
T3908 |
14135-14141 |
NN |
denotes |
primer |
T3909 |
14105-14114 |
JJ |
denotes |
olfactory |
T3910 |
14115-14123 |
NN |
denotes |
receptor |
T3911 |
14124-14134 |
JJ |
denotes |
degenerate |
T3912 |
14141-14143 |
, |
denotes |
, |
T3913 |
14143-14146 |
NN |
denotes |
P26 |
T3914 |
14147-14148 |
-LRB- |
denotes |
[ |
T3915 |
14148-14150 |
CD |
denotes |
17 |
T3916 |
14150-14151 |
-RRB- |
denotes |
] |
T3917 |
14151-14153 |
, |
denotes |
, |
T3918 |
14153-14157 |
DT |
denotes |
this |
T3919 |
14158-14164 |
NN |
denotes |
primer |
T3920 |
14165-14179 |
RB |
denotes |
preferentially |
T3921 |
14283-14294 |
VBD |
denotes |
represented |
T3922 |
14190-14195 |
NN |
denotes |
class |
T3923 |
14208-14217 |
NNS |
denotes |
receptors |
T3924 |
14196-14197 |
CD |
denotes |
I |
T3925 |
14198-14207 |
JJ |
denotes |
olfactory |
T3926 |
14218-14222 |
IN |
denotes |
from |
T3927 |
14223-14228 |
NN |
denotes |
mouse |
T3928 |
14237-14240 |
NN |
denotes |
DNA |
T3929 |
14229-14236 |
JJ |
denotes |
genomic |
T3930 |
14240-14242 |
: |
denotes |
: |
T3931 |
14242-14244 |
IN |
denotes |
of |
T3932 |
14245-14247 |
CD |
denotes |
33 |
T3933 |
14270-14278 |
NNS |
denotes |
products |
T3934 |
14248-14257 |
JJ |
denotes |
sequenced |
T3935 |
14257-14259 |
, |
denotes |
, |
T3936 |
14259-14265 |
JJ |
denotes |
cloned |
T3937 |
14266-14269 |
NN |
denotes |
PCR |
T3938 |
14278-14280 |
, |
denotes |
, |
T3939 |
14280-14282 |
CD |
denotes |
17 |
T3940 |
14295-14300 |
CD |
denotes |
seven |
T3941 |
14329-14338 |
NNS |
denotes |
receptors |
T3942 |
14301-14310 |
JJ |
denotes |
different |
T3943 |
14311-14316 |
NN |
denotes |
class |
T3944 |
14317-14318 |
CD |
denotes |
I |
T3945 |
14319-14328 |
JJ |
denotes |
olfactory |
T3946 |
14338-14340 |
, |
denotes |
, |
T3947 |
14340-14343 |
CD |
denotes |
six |
T3948 |
14344-14355 |
VBD |
denotes |
represented |
T3949 |
14356-14361 |
CD |
denotes |
three |
T3950 |
14391-14400 |
NNS |
denotes |
receptors |
T3951 |
14362-14371 |
JJ |
denotes |
different |
T3952 |
14372-14377 |
NN |
denotes |
class |
T3953 |
14378-14380 |
CD |
denotes |
II |
T3954 |
14381-14390 |
JJ |
denotes |
olfactory |
T3955 |
14400-14402 |
, |
denotes |
, |
T3956 |
14402-14405 |
CC |
denotes |
and |
T3957 |
14406-14409 |
CD |
denotes |
ten |
T3958 |
14410-14421 |
VBD |
denotes |
represented |
T3959 |
14422-14426 |
CD |
denotes |
five |
T3960 |
14460-14472 |
NNS |
denotes |
contaminants |
T3961 |
14427-14436 |
JJ |
denotes |
different |
T3962 |
14437-14450 |
JJ |
denotes |
non-olfactory |
T3963 |
14451-14459 |
NN |
denotes |
receptor |
T3964 |
14472-14473 |
. |
denotes |
. |
T3965 |
14473-14700 |
sentence |
denotes |
Degenerate PCR, cloning, and sequencing from reverse-transcribed olfactory epithelium RNA showed that at least seven class I olfactory receptors are expressed, as well as one additional class II gene (colored red in Figure 1). |
T3966 |
14474-14484 |
JJ |
denotes |
Degenerate |
T3967 |
14485-14488 |
NN |
denotes |
PCR |
T3968 |
14564-14570 |
VBD |
denotes |
showed |
T3969 |
14488-14490 |
, |
denotes |
, |
T3970 |
14490-14497 |
NN |
denotes |
cloning |
T3971 |
14497-14499 |
, |
denotes |
, |
T3972 |
14499-14502 |
CC |
denotes |
and |
T3973 |
14503-14513 |
NN |
denotes |
sequencing |
T3974 |
14514-14518 |
IN |
denotes |
from |
T3975 |
14519-14526 |
JJ |
denotes |
reverse |
T3976 |
14527-14538 |
VBN |
denotes |
transcribed |
T3977 |
14526-14527 |
HYPH |
denotes |
- |
T3978 |
14560-14563 |
NN |
denotes |
RNA |
T3979 |
14539-14548 |
JJ |
denotes |
olfactory |
T3980 |
14549-14559 |
NN |
denotes |
epithelium |
T3981 |
14571-14575 |
IN |
denotes |
that |
T3982 |
14623-14632 |
VBN |
denotes |
expressed |
T3983 |
14576-14578 |
RB |
denotes |
at |
T3984 |
14585-14590 |
CD |
denotes |
seven |
T3985 |
14579-14584 |
RBS |
denotes |
least |
T3986 |
14609-14618 |
NNS |
denotes |
receptors |
T3987 |
14591-14596 |
NN |
denotes |
class |
T3988 |
14597-14598 |
CD |
denotes |
I |
T3989 |
14599-14608 |
JJ |
denotes |
olfactory |
T3990 |
14619-14622 |
VBP |
denotes |
are |
T3991 |
14632-14634 |
, |
denotes |
, |
T3992 |
14634-14636 |
RB |
denotes |
as |
T3993 |
14642-14644 |
IN |
denotes |
as |
T3994 |
14637-14641 |
RB |
denotes |
well |
T3995 |
14669-14673 |
NN |
denotes |
gene |
T3996 |
14645-14648 |
CD |
denotes |
one |
T3997 |
14649-14659 |
JJ |
denotes |
additional |
T3998 |
14660-14665 |
NN |
denotes |
class |
T3999 |
14666-14668 |
CD |
denotes |
II |
T4000 |
14674-14675 |
-LRB- |
denotes |
( |
T4001 |
14675-14682 |
VBN |
denotes |
colored |
T4002 |
14683-14686 |
JJ |
denotes |
red |
T4003 |
14687-14689 |
IN |
denotes |
in |
T4004 |
14690-14696 |
NN |
denotes |
Figure |
T4005 |
14697-14698 |
CD |
denotes |
1 |
T4006 |
14698-14699 |
-RRB- |
denotes |
) |
T4007 |
14699-14700 |
. |
denotes |
. |
T4008 |
14700-14915 |
sentence |
denotes |
However, no products could be obtained from the adult or the fetal olfactory epithelium cDNA libraries using the class I primer, suggesting that the libraries contain very low levels of class I olfactory receptors. |
T4009 |
14701-14708 |
RB |
denotes |
However |
T4010 |
14731-14739 |
VBN |
denotes |
obtained |
T4011 |
14708-14710 |
, |
denotes |
, |
T4012 |
14710-14712 |
DT |
denotes |
no |
T4013 |
14713-14721 |
NNS |
denotes |
products |
T4014 |
14722-14727 |
MD |
denotes |
could |
T4015 |
14728-14730 |
VB |
denotes |
be |
T4016 |
14740-14744 |
IN |
denotes |
from |
T4017 |
14745-14748 |
DT |
denotes |
the |
T4018 |
14749-14754 |
JJ |
denotes |
adult |
T4019 |
14755-14757 |
CC |
denotes |
or |
T4020 |
14758-14761 |
DT |
denotes |
the |
T4021 |
14762-14767 |
JJ |
denotes |
fetal |
T4022 |
14794-14803 |
NNS |
denotes |
libraries |
T4023 |
14768-14777 |
JJ |
denotes |
olfactory |
T4024 |
14778-14788 |
NN |
denotes |
epithelium |
T4025 |
14789-14793 |
NN |
denotes |
cDNA |
T4026 |
14804-14809 |
VBG |
denotes |
using |
T4027 |
14810-14813 |
DT |
denotes |
the |
T4028 |
14822-14828 |
NN |
denotes |
primer |
T4029 |
14814-14819 |
NN |
denotes |
class |
T4030 |
14820-14821 |
CD |
denotes |
I |
T4031 |
14828-14830 |
, |
denotes |
, |
T4032 |
14830-14840 |
VBG |
denotes |
suggesting |
T4033 |
14841-14845 |
IN |
denotes |
that |
T4034 |
14860-14867 |
VBP |
denotes |
contain |
T4035 |
14846-14849 |
DT |
denotes |
the |
T4036 |
14850-14859 |
NNS |
denotes |
libraries |
T4037 |
14868-14872 |
RB |
denotes |
very |
T4038 |
14873-14876 |
JJ |
denotes |
low |
T4039 |
14877-14883 |
NNS |
denotes |
levels |
T4040 |
14884-14886 |
IN |
denotes |
of |
T4041 |
14887-14892 |
NN |
denotes |
class |
T4042 |
14905-14914 |
NNS |
denotes |
receptors |
T4043 |
14893-14894 |
CD |
denotes |
I |
T4044 |
14895-14904 |
JJ |
denotes |
olfactory |
T4045 |
14914-14915 |
. |
denotes |
. |
T4046 |
14915-15199 |
sentence |
denotes |
We also confirmed expression of nine additional olfactory receptors (three class I and six class II, colored red in Figure 1) from subclades that were poorly represented in our cDNA screen using gene-specific primer pairs to amplify cDNA library or reverse-transcribed RNA templates. |
T4047 |
14916-14918 |
PRP |
denotes |
We |
T4048 |
14924-14933 |
VBD |
denotes |
confirmed |
T4049 |
14919-14923 |
RB |
denotes |
also |
T4050 |
14934-14944 |
NN |
denotes |
expression |
T4051 |
14945-14947 |
IN |
denotes |
of |
T4052 |
14948-14952 |
CD |
denotes |
nine |
T4053 |
14974-14983 |
NNS |
denotes |
receptors |
T4054 |
14953-14963 |
JJ |
denotes |
additional |
T4055 |
14964-14973 |
JJ |
denotes |
olfactory |
T4056 |
14984-14985 |
-LRB- |
denotes |
( |
T4057 |
14985-14990 |
CD |
denotes |
three |
T4058 |
14991-14996 |
NN |
denotes |
class |
T4059 |
14997-14998 |
CD |
denotes |
I |
T4060 |
14999-15002 |
CC |
denotes |
and |
T4061 |
15003-15006 |
CD |
denotes |
six |
T4062 |
15007-15012 |
NN |
denotes |
class |
T4063 |
15013-15015 |
CD |
denotes |
II |
T4064 |
15015-15017 |
, |
denotes |
, |
T4065 |
15017-15024 |
VBN |
denotes |
colored |
T4066 |
15025-15028 |
JJ |
denotes |
red |
T4067 |
15029-15031 |
IN |
denotes |
in |
T4068 |
15032-15038 |
NN |
denotes |
Figure |
T4069 |
15039-15040 |
CD |
denotes |
1 |
T4070 |
15040-15041 |
-RRB- |
denotes |
) |
T4071 |
15042-15046 |
IN |
denotes |
from |
T4072 |
15047-15056 |
NNS |
denotes |
subclades |
T4073 |
15057-15061 |
WDT |
denotes |
that |
T4074 |
15074-15085 |
VBN |
denotes |
represented |
T4075 |
15062-15066 |
VBD |
denotes |
were |
T4076 |
15067-15073 |
RB |
denotes |
poorly |
T4077 |
15086-15088 |
IN |
denotes |
in |
T4078 |
15089-15092 |
PRP$ |
denotes |
our |
T4079 |
15098-15104 |
NN |
denotes |
screen |
T4080 |
15093-15097 |
NN |
denotes |
cDNA |
T4081 |
15105-15110 |
VBG |
denotes |
using |
T4082 |
15111-15115 |
NN |
denotes |
gene |
T4083 |
15116-15124 |
JJ |
denotes |
specific |
T4084 |
15115-15116 |
HYPH |
denotes |
- |
T4085 |
15132-15137 |
NNS |
denotes |
pairs |
T4086 |
15125-15131 |
NN |
denotes |
primer |
T4087 |
15138-15140 |
TO |
denotes |
to |
T4088 |
15141-15148 |
VB |
denotes |
amplify |
T4089 |
15149-15153 |
NN |
denotes |
cDNA |
T4090 |
15154-15161 |
NN |
denotes |
library |
T4091 |
15162-15164 |
CC |
denotes |
or |
T4092 |
15165-15172 |
JJ |
denotes |
reverse |
T4093 |
15173-15184 |
VBN |
denotes |
transcribed |
T4094 |
15172-15173 |
HYPH |
denotes |
- |
T4095 |
15189-15198 |
NNS |
denotes |
templates |
T4096 |
15185-15188 |
NN |
denotes |
RNA |
T4097 |
15198-15199 |
. |
denotes |
. |
T4098 |
15199-15338 |
sentence |
denotes |
For two of the class I genes we had shown to be expressed, we determined relative transcript levels using quantitative RT-PCR (see below). |
T4099 |
15200-15203 |
IN |
denotes |
For |
T4100 |
15262-15272 |
VBD |
denotes |
determined |
T4101 |
15204-15207 |
CD |
denotes |
two |
T4102 |
15208-15210 |
IN |
denotes |
of |
T4103 |
15211-15214 |
DT |
denotes |
the |
T4104 |
15223-15228 |
NNS |
denotes |
genes |
T4105 |
15215-15220 |
NN |
denotes |
class |
T4106 |
15221-15222 |
CD |
denotes |
I |
T4107 |
15229-15231 |
PRP |
denotes |
we |
T4108 |
15236-15241 |
VBN |
denotes |
shown |
T4109 |
15232-15235 |
VBD |
denotes |
had |
T4110 |
15242-15244 |
TO |
denotes |
to |
T4111 |
15248-15257 |
VBN |
denotes |
expressed |
T4112 |
15245-15247 |
VB |
denotes |
be |
T4113 |
15257-15259 |
, |
denotes |
, |
T4114 |
15259-15261 |
PRP |
denotes |
we |
T4115 |
15273-15281 |
JJ |
denotes |
relative |
T4116 |
15293-15299 |
NNS |
denotes |
levels |
T4117 |
15282-15292 |
NN |
denotes |
transcript |
T4118 |
15300-15305 |
VBG |
denotes |
using |
T4119 |
15306-15318 |
JJ |
denotes |
quantitative |
T4120 |
15322-15325 |
NN |
denotes |
PCR |
T4121 |
15319-15321 |
NN |
denotes |
RT |
T4122 |
15321-15322 |
HYPH |
denotes |
- |
T4123 |
15326-15327 |
-LRB- |
denotes |
( |
T4124 |
15327-15330 |
VB |
denotes |
see |
T4125 |
15331-15336 |
RB |
denotes |
below |
T4126 |
15336-15337 |
-RRB- |
denotes |
) |
T4127 |
15337-15338 |
. |
denotes |
. |
T4128 |
15338-15667 |
sentence |
denotes |
Expression levels were similar to those observed for genes that were represented in our cDNA collection, suggesting that class I olfactory receptors are not under-represented in the olfactory epithelium, and that the dearth of class I cDNAs in our screen is likely to be due to bias in the libraries and/or hybridization probes. |
T4129 |
15339-15349 |
NN |
denotes |
Expression |
T4130 |
15350-15356 |
NNS |
denotes |
levels |
T4131 |
15357-15361 |
VBD |
denotes |
were |
T4132 |
15362-15369 |
JJ |
denotes |
similar |
T4133 |
15370-15372 |
IN |
denotes |
to |
T4134 |
15373-15378 |
DT |
denotes |
those |
T4135 |
15379-15387 |
VBN |
denotes |
observed |
T4136 |
15388-15391 |
IN |
denotes |
for |
T4137 |
15392-15397 |
NNS |
denotes |
genes |
T4138 |
15398-15402 |
WDT |
denotes |
that |
T4139 |
15408-15419 |
VBN |
denotes |
represented |
T4140 |
15403-15407 |
VBD |
denotes |
were |
T4141 |
15420-15422 |
IN |
denotes |
in |
T4142 |
15423-15426 |
PRP$ |
denotes |
our |
T4143 |
15432-15442 |
NN |
denotes |
collection |
T4144 |
15427-15431 |
NN |
denotes |
cDNA |
T4145 |
15442-15444 |
, |
denotes |
, |
T4146 |
15444-15454 |
VBG |
denotes |
suggesting |
T4147 |
15455-15459 |
IN |
denotes |
that |
T4148 |
15502-15513 |
VBN |
denotes |
represented |
T4149 |
15460-15465 |
NN |
denotes |
class |
T4150 |
15478-15487 |
NNS |
denotes |
receptors |
T4151 |
15466-15467 |
CD |
denotes |
I |
T4152 |
15468-15477 |
JJ |
denotes |
olfactory |
T4153 |
15488-15491 |
VBP |
denotes |
are |
T4154 |
15492-15495 |
RB |
denotes |
not |
T4155 |
15496-15501 |
RB |
denotes |
under |
T4156 |
15501-15502 |
HYPH |
denotes |
- |
T4157 |
15514-15516 |
IN |
denotes |
in |
T4158 |
15517-15520 |
DT |
denotes |
the |
T4159 |
15531-15541 |
NN |
denotes |
epithelium |
T4160 |
15521-15530 |
JJ |
denotes |
olfactory |
T4161 |
15541-15543 |
, |
denotes |
, |
T4162 |
15543-15546 |
CC |
denotes |
and |
T4163 |
15547-15551 |
IN |
denotes |
that |
T4164 |
15594-15596 |
VBZ |
denotes |
is |
T4165 |
15552-15555 |
DT |
denotes |
the |
T4166 |
15556-15562 |
NN |
denotes |
dearth |
T4167 |
15563-15565 |
IN |
denotes |
of |
T4168 |
15566-15571 |
NN |
denotes |
class |
T4169 |
15574-15579 |
NNS |
denotes |
cDNAs |
T4170 |
15572-15573 |
CD |
denotes |
I |
T4171 |
15580-15582 |
IN |
denotes |
in |
T4172 |
15583-15586 |
PRP$ |
denotes |
our |
T4173 |
15587-15593 |
NN |
denotes |
screen |
T4174 |
15597-15603 |
JJ |
denotes |
likely |
T4175 |
15604-15606 |
TO |
denotes |
to |
T4176 |
15607-15609 |
VB |
denotes |
be |
T4177 |
15610-15613 |
IN |
denotes |
due |
T4178 |
15614-15616 |
IN |
denotes |
to |
T4179 |
15617-15621 |
NN |
denotes |
bias |
T4180 |
15622-15624 |
IN |
denotes |
in |
T4181 |
15625-15628 |
DT |
denotes |
the |
T4182 |
15629-15638 |
NNS |
denotes |
libraries |
T4183 |
15639-15642 |
CC |
denotes |
and |
T4184 |
15642-15643 |
HYPH |
denotes |
/ |
T4185 |
15643-15645 |
CC |
denotes |
or |
T4186 |
15646-15659 |
NN |
denotes |
hybridization |
T4187 |
15660-15666 |
NNS |
denotes |
probes |
T4188 |
15666-15667 |
. |
denotes |
. |
T4620 |
15669-15673 |
DT |
denotes |
Some |
T4621 |
15693-15698 |
NNS |
denotes |
genes |
T4622 |
15674-15683 |
JJ |
denotes |
olfactory |
T4623 |
15684-15692 |
NN |
denotes |
receptor |
T4624 |
15703-15712 |
VBN |
denotes |
expressed |
T4625 |
15699-15702 |
VBP |
denotes |
are |
T4626 |
15713-15715 |
IN |
denotes |
at |
T4627 |
15716-15722 |
JJR |
denotes |
higher |
T4628 |
15723-15729 |
NNS |
denotes |
levels |
T4629 |
15730-15734 |
IN |
denotes |
than |
T4630 |
15735-15741 |
NNS |
denotes |
others |
T4631 |
15741-15845 |
sentence |
denotes |
Our cDNA screen suggests that some olfactory receptor genes are expressed at higher levels than others. |
T4632 |
15742-15745 |
PRP$ |
denotes |
Our |
T4633 |
15751-15757 |
NN |
denotes |
screen |
T4634 |
15746-15750 |
NN |
denotes |
cDNA |
T4635 |
15758-15766 |
VBZ |
denotes |
suggests |
T4636 |
15767-15771 |
IN |
denotes |
that |
T4637 |
15806-15815 |
VBN |
denotes |
expressed |
T4638 |
15772-15776 |
DT |
denotes |
some |
T4639 |
15796-15801 |
NNS |
denotes |
genes |
T4640 |
15777-15786 |
JJ |
denotes |
olfactory |
T4641 |
15787-15795 |
NN |
denotes |
receptor |
T4642 |
15802-15805 |
VBP |
denotes |
are |
T4643 |
15816-15818 |
IN |
denotes |
at |
T4644 |
15819-15825 |
JJR |
denotes |
higher |
T4645 |
15826-15832 |
NNS |
denotes |
levels |
T4646 |
15833-15837 |
IN |
denotes |
than |
T4647 |
15838-15844 |
NNS |
denotes |
others |
T4648 |
15844-15845 |
. |
denotes |
. |
T4649 |
15845-16326 |
sentence |
denotes |
If all olfactory receptor genes were expressed at equal levels, and our screen and library were unbiased in their coverage of the class II olfactory receptors, the number of cDNAs detected per class II olfactory receptor should follow a Poisson distribution, calculated based on the assumption that all 983 intact class II olfactory receptors have an equal chance of being represented in the screen, but that class I olfactory receptors and pseudogenes cannot be found (Figure 2). |
T4650 |
15846-15848 |
IN |
denotes |
If |
T4651 |
15883-15892 |
VBN |
denotes |
expressed |
T4652 |
15849-15852 |
DT |
denotes |
all |
T4653 |
15872-15877 |
NNS |
denotes |
genes |
T4654 |
15853-15862 |
JJ |
denotes |
olfactory |
T4655 |
15863-15871 |
NN |
denotes |
receptor |
T4656 |
15878-15882 |
VBD |
denotes |
were |
T4657 |
16074-16080 |
VB |
denotes |
follow |
T4658 |
15893-15895 |
IN |
denotes |
at |
T4659 |
15896-15901 |
JJ |
denotes |
equal |
T4660 |
15902-15908 |
NNS |
denotes |
levels |
T4661 |
15908-15910 |
, |
denotes |
, |
T4662 |
15910-15913 |
CC |
denotes |
and |
T4663 |
15914-15917 |
PRP$ |
denotes |
our |
T4664 |
15918-15924 |
NN |
denotes |
screen |
T4665 |
15937-15941 |
VBD |
denotes |
were |
T4666 |
15925-15928 |
CC |
denotes |
and |
T4667 |
15929-15936 |
NN |
denotes |
library |
T4668 |
15942-15950 |
JJ |
denotes |
unbiased |
T4669 |
15951-15953 |
IN |
denotes |
in |
T4670 |
15954-15959 |
PRP$ |
denotes |
their |
T4671 |
15960-15968 |
NN |
denotes |
coverage |
T4672 |
15969-15971 |
IN |
denotes |
of |
T4673 |
15972-15975 |
DT |
denotes |
the |
T4674 |
15995-16004 |
NNS |
denotes |
receptors |
T4675 |
15976-15981 |
NN |
denotes |
class |
T4676 |
15982-15984 |
CD |
denotes |
II |
T4677 |
15985-15994 |
JJ |
denotes |
olfactory |
T4678 |
16004-16006 |
, |
denotes |
, |
T4679 |
16006-16009 |
DT |
denotes |
the |
T4680 |
16010-16016 |
NN |
denotes |
number |
T4681 |
16017-16019 |
IN |
denotes |
of |
T4682 |
16020-16025 |
NNS |
denotes |
cDNAs |
T4683 |
16026-16034 |
VBN |
denotes |
detected |
T4684 |
16035-16038 |
IN |
denotes |
per |
T4685 |
16039-16044 |
NN |
denotes |
class |
T4686 |
16058-16066 |
NN |
denotes |
receptor |
T4687 |
16045-16047 |
CD |
denotes |
II |
T4688 |
16048-16057 |
JJ |
denotes |
olfactory |
T4689 |
16067-16073 |
MD |
denotes |
should |
T4690 |
16081-16082 |
DT |
denotes |
a |
T4691 |
16091-16103 |
NN |
denotes |
distribution |
T4692 |
16083-16090 |
NNP |
denotes |
Poisson |
T4693 |
16103-16105 |
, |
denotes |
, |
T4694 |
16105-16115 |
VBN |
denotes |
calculated |
T4695 |
16116-16121 |
VBN |
denotes |
based |
T4696 |
16122-16124 |
IN |
denotes |
on |
T4697 |
16125-16128 |
DT |
denotes |
the |
T4698 |
16129-16139 |
NN |
denotes |
assumption |
T4699 |
16140-16144 |
IN |
denotes |
that |
T4700 |
16189-16193 |
VBP |
denotes |
have |
T4701 |
16145-16148 |
DT |
denotes |
all |
T4702 |
16179-16188 |
NNS |
denotes |
receptors |
T4703 |
16149-16152 |
CD |
denotes |
983 |
T4704 |
16153-16159 |
JJ |
denotes |
intact |
T4705 |
16160-16165 |
NN |
denotes |
class |
T4706 |
16166-16168 |
CD |
denotes |
II |
T4707 |
16169-16178 |
JJ |
denotes |
olfactory |
T4708 |
16194-16196 |
DT |
denotes |
an |
T4709 |
16203-16209 |
NN |
denotes |
chance |
T4710 |
16197-16202 |
JJ |
denotes |
equal |
T4711 |
16210-16212 |
IN |
denotes |
of |
T4712 |
16213-16218 |
VBG |
denotes |
being |
T4713 |
16219-16230 |
VBN |
denotes |
represented |
T4714 |
16231-16233 |
IN |
denotes |
in |
T4715 |
16234-16237 |
DT |
denotes |
the |
T4716 |
16238-16244 |
NN |
denotes |
screen |
T4717 |
16244-16246 |
, |
denotes |
, |
T4718 |
16246-16249 |
CC |
denotes |
but |
T4719 |
16250-16254 |
IN |
denotes |
that |
T4720 |
16309-16314 |
VBN |
denotes |
found |
T4721 |
16255-16260 |
NN |
denotes |
class |
T4722 |
16273-16282 |
NNS |
denotes |
receptors |
T4723 |
16261-16262 |
CD |
denotes |
I |
T4724 |
16263-16272 |
JJ |
denotes |
olfactory |
T4725 |
16283-16286 |
CC |
denotes |
and |
T4726 |
16287-16298 |
NNS |
denotes |
pseudogenes |
T4727 |
16299-16302 |
MD |
denotes |
can |
T4728 |
16302-16305 |
RB |
denotes |
not |
T4729 |
16306-16308 |
VB |
denotes |
be |
T4730 |
16315-16316 |
-LRB- |
denotes |
( |
T4731 |
16316-16322 |
NN |
denotes |
Figure |
T4732 |
16323-16324 |
CD |
denotes |
2 |
T4733 |
16324-16325 |
-RRB- |
denotes |
) |
T4734 |
16325-16326 |
. |
denotes |
. |
T4735 |
16326-16527 |
sentence |
denotes |
We calculate a low probability (approximately one in 28) that we would observe any gene with at least eight matching cDNAs in the set of 1,176 cDNAs we assigned to single olfactory receptor sequences. |
T4736 |
16327-16329 |
PRP |
denotes |
We |
T4737 |
16330-16339 |
VBP |
denotes |
calculate |
T4738 |
16340-16341 |
DT |
denotes |
a |
T4739 |
16346-16357 |
NN |
denotes |
probability |
T4740 |
16342-16345 |
JJ |
denotes |
low |
T4741 |
16358-16359 |
-LRB- |
denotes |
( |
T4742 |
16373-16376 |
CD |
denotes |
one |
T4743 |
16359-16372 |
RB |
denotes |
approximately |
T4744 |
16377-16379 |
IN |
denotes |
in |
T4745 |
16380-16382 |
CD |
denotes |
28 |
T4746 |
16382-16383 |
-RRB- |
denotes |
) |
T4747 |
16384-16388 |
IN |
denotes |
that |
T4748 |
16398-16405 |
VB |
denotes |
observe |
T4749 |
16389-16391 |
PRP |
denotes |
we |
T4750 |
16392-16397 |
MD |
denotes |
would |
T4751 |
16406-16409 |
DT |
denotes |
any |
T4752 |
16410-16414 |
NN |
denotes |
gene |
T4753 |
16415-16419 |
IN |
denotes |
with |
T4754 |
16420-16422 |
RB |
denotes |
at |
T4755 |
16429-16434 |
CD |
denotes |
eight |
T4756 |
16423-16428 |
RBS |
denotes |
least |
T4757 |
16444-16449 |
NNS |
denotes |
cDNAs |
T4758 |
16435-16443 |
VBG |
denotes |
matching |
T4759 |
16450-16452 |
IN |
denotes |
in |
T4760 |
16453-16456 |
DT |
denotes |
the |
T4761 |
16457-16460 |
NN |
denotes |
set |
T4762 |
16461-16463 |
IN |
denotes |
of |
T4763 |
16464-16469 |
CD |
denotes |
1,176 |
T4764 |
16470-16475 |
NNS |
denotes |
cDNAs |
T4765 |
16476-16478 |
PRP |
denotes |
we |
T4766 |
16479-16487 |
VBD |
denotes |
assigned |
T4767 |
16488-16490 |
IN |
denotes |
to |
T4768 |
16491-16497 |
JJ |
denotes |
single |
T4769 |
16517-16526 |
NNS |
denotes |
sequences |
T4770 |
16498-16507 |
JJ |
denotes |
olfactory |
T4771 |
16508-16516 |
NN |
denotes |
receptor |
T4772 |
16526-16527 |
. |
denotes |
. |
T4773 |
16527-16706 |
sentence |
denotes |
However, for 17 olfactory receptors, we found ten or more matching cDNAs, suggesting that they might be expressed at higher levels than other olfactory receptor genes (Figure 2). |
T4774 |
16528-16535 |
RB |
denotes |
However |
T4775 |
16568-16573 |
VBD |
denotes |
found |
T4776 |
16535-16537 |
, |
denotes |
, |
T4777 |
16537-16540 |
IN |
denotes |
for |
T4778 |
16541-16543 |
CD |
denotes |
17 |
T4779 |
16554-16563 |
NNS |
denotes |
receptors |
T4780 |
16544-16553 |
JJ |
denotes |
olfactory |
T4781 |
16563-16565 |
, |
denotes |
, |
T4782 |
16565-16567 |
PRP |
denotes |
we |
T4783 |
16574-16577 |
CD |
denotes |
ten |
T4784 |
16595-16600 |
NNS |
denotes |
cDNAs |
T4785 |
16578-16580 |
CC |
denotes |
or |
T4786 |
16581-16585 |
JJR |
denotes |
more |
T4787 |
16586-16594 |
NN |
denotes |
matching |
T4788 |
16600-16602 |
, |
denotes |
, |
T4789 |
16602-16612 |
VBG |
denotes |
suggesting |
T4790 |
16613-16617 |
IN |
denotes |
that |
T4791 |
16632-16641 |
VBN |
denotes |
expressed |
T4792 |
16618-16622 |
PRP |
denotes |
they |
T4793 |
16623-16628 |
MD |
denotes |
might |
T4794 |
16629-16631 |
VB |
denotes |
be |
T4795 |
16642-16644 |
IN |
denotes |
at |
T4796 |
16645-16651 |
JJR |
denotes |
higher |
T4797 |
16652-16658 |
NNS |
denotes |
levels |
T4798 |
16659-16663 |
IN |
denotes |
than |
T4799 |
16664-16669 |
JJ |
denotes |
other |
T4800 |
16689-16694 |
NNS |
denotes |
genes |
T4801 |
16670-16679 |
JJ |
denotes |
olfactory |
T4802 |
16680-16688 |
NN |
denotes |
receptor |
T4803 |
16695-16696 |
-LRB- |
denotes |
( |
T4804 |
16696-16702 |
NN |
denotes |
Figure |
T4805 |
16703-16704 |
CD |
denotes |
2 |
T4806 |
16704-16705 |
-RRB- |
denotes |
) |
T4807 |
16705-16706 |
. |
denotes |
. |
T4808 |
16706-16909 |
sentence |
denotes |
The two genes for which we found most cDNAs (AY318726/MOR28 and AY318727/MOR10) are genomically adjacent and in the well-studied olfactory receptor cluster next to the T-cell receptor α/δ locus [18,31]. |
T4809 |
16707-16710 |
DT |
denotes |
The |
T4810 |
16715-16720 |
NNS |
denotes |
genes |
T4811 |
16711-16714 |
CD |
denotes |
two |
T4812 |
16787-16790 |
VBP |
denotes |
are |
T4813 |
16721-16724 |
IN |
denotes |
for |
T4814 |
16734-16739 |
VBD |
denotes |
found |
T4815 |
16725-16730 |
WDT |
denotes |
which |
T4816 |
16731-16733 |
PRP |
denotes |
we |
T4817 |
16740-16744 |
JJS |
denotes |
most |
T4818 |
16745-16750 |
NNS |
denotes |
cDNAs |
T4819 |
16751-16752 |
-LRB- |
denotes |
( |
T4820 |
16752-16760 |
NN |
denotes |
AY318726 |
T4821 |
16761-16766 |
NN |
denotes |
MOR28 |
T4822 |
16760-16761 |
HYPH |
denotes |
/ |
T4823 |
16767-16770 |
CC |
denotes |
and |
T4824 |
16771-16779 |
NN |
denotes |
AY318727 |
T4825 |
16780-16785 |
NN |
denotes |
MOR10 |
T4826 |
16779-16780 |
HYPH |
denotes |
/ |
T4827 |
16785-16786 |
-RRB- |
denotes |
) |
T4828 |
16791-16802 |
RB |
denotes |
genomically |
T4829 |
16803-16811 |
JJ |
denotes |
adjacent |
T4830 |
16812-16815 |
CC |
denotes |
and |
T4831 |
16816-16818 |
IN |
denotes |
in |
T4832 |
16819-16822 |
DT |
denotes |
the |
T4833 |
16855-16862 |
NN |
denotes |
cluster |
T4834 |
16823-16827 |
RB |
denotes |
well |
T4835 |
16828-16835 |
VBN |
denotes |
studied |
T4836 |
16827-16828 |
HYPH |
denotes |
- |
T4837 |
16836-16845 |
JJ |
denotes |
olfactory |
T4838 |
16846-16854 |
NN |
denotes |
receptor |
T4839 |
16863-16867 |
JJ |
denotes |
next |
T4840 |
16868-16870 |
IN |
denotes |
to |
T4841 |
16871-16874 |
DT |
denotes |
the |
T4842 |
16895-16900 |
NN |
denotes |
locus |
T4843 |
16875-16876 |
NN |
denotes |
T |
T4844 |
16877-16881 |
NN |
denotes |
cell |
T4845 |
16876-16877 |
HYPH |
denotes |
- |
T4846 |
16882-16890 |
NN |
denotes |
receptor |
T4847 |
16891-16892 |
NN |
denotes |
α |
T4848 |
16893-16894 |
NN |
denotes |
δ |
T4849 |
16892-16893 |
HYPH |
denotes |
/ |
T4850 |
16901-16902 |
-LRB- |
denotes |
[ |
T4851 |
16905-16907 |
CD |
denotes |
31 |
T4852 |
16902-16904 |
CD |
denotes |
18 |
T4853 |
16904-16905 |
, |
denotes |
, |
T4854 |
16907-16908 |
-RRB- |
denotes |
] |
T4855 |
16908-16909 |
. |
denotes |
. |
T4856 |
16909-17031 |
sentence |
denotes |
Quantitative RT-PCR of six olfactory receptors confirms that expression levels do indeed vary considerably between genes. |
T4857 |
16910-16922 |
JJ |
denotes |
Quantitative |
T4858 |
16926-16929 |
NN |
denotes |
PCR |
T4859 |
16923-16925 |
NN |
denotes |
RT |
T4860 |
16925-16926 |
HYPH |
denotes |
- |
T4861 |
16957-16965 |
VBZ |
denotes |
confirms |
T4862 |
16930-16932 |
IN |
denotes |
of |
T4863 |
16933-16936 |
CD |
denotes |
six |
T4864 |
16947-16956 |
NNS |
denotes |
receptors |
T4865 |
16937-16946 |
JJ |
denotes |
olfactory |
T4866 |
16966-16970 |
IN |
denotes |
that |
T4867 |
16999-17003 |
VB |
denotes |
vary |
T4868 |
16971-16981 |
NN |
denotes |
expression |
T4869 |
16982-16988 |
NNS |
denotes |
levels |
T4870 |
16989-16991 |
VBP |
denotes |
do |
T4871 |
16992-16998 |
RB |
denotes |
indeed |
T4872 |
17004-17016 |
RB |
denotes |
considerably |
T4873 |
17017-17024 |
IN |
denotes |
between |
T4874 |
17025-17030 |
NNS |
denotes |
genes |
T4875 |
17030-17031 |
. |
denotes |
. |
T4876 |
17031-17229 |
sentence |
denotes |
We used quantitative (real-time) PCR to measure olfactory epithelium transcript levels of six olfactory receptor genes and the ribosomal S16 gene in three mice of the same inbred strain (Figure 3). |
T4877 |
17032-17034 |
PRP |
denotes |
We |
T4878 |
17035-17039 |
VBD |
denotes |
used |
T4879 |
17040-17052 |
JJ |
denotes |
quantitative |
T4880 |
17065-17068 |
NN |
denotes |
PCR |
T4881 |
17053-17054 |
-LRB- |
denotes |
( |
T4882 |
17054-17058 |
JJ |
denotes |
real |
T4883 |
17059-17063 |
NN |
denotes |
time |
T4884 |
17058-17059 |
HYPH |
denotes |
- |
T4885 |
17063-17064 |
-RRB- |
denotes |
) |
T4886 |
17069-17071 |
TO |
denotes |
to |
T4887 |
17072-17079 |
VB |
denotes |
measure |
T4888 |
17080-17089 |
JJ |
denotes |
olfactory |
T4889 |
17090-17100 |
NN |
denotes |
epithelium |
T4890 |
17112-17118 |
NNS |
denotes |
levels |
T4891 |
17101-17111 |
NN |
denotes |
transcript |
T4892 |
17119-17121 |
IN |
denotes |
of |
T4893 |
17122-17125 |
CD |
denotes |
six |
T4894 |
17145-17150 |
NNS |
denotes |
genes |
T4895 |
17126-17135 |
JJ |
denotes |
olfactory |
T4896 |
17136-17144 |
NN |
denotes |
receptor |
T4897 |
17151-17154 |
CC |
denotes |
and |
T4898 |
17155-17158 |
DT |
denotes |
the |
T4899 |
17173-17177 |
NN |
denotes |
gene |
T4900 |
17159-17168 |
JJ |
denotes |
ribosomal |
T4901 |
17169-17172 |
NN |
denotes |
S16 |
T4902 |
17178-17180 |
IN |
denotes |
in |
T4903 |
17181-17186 |
CD |
denotes |
three |
T4904 |
17187-17191 |
NNS |
denotes |
mice |
T4905 |
17192-17194 |
IN |
denotes |
of |
T4906 |
17195-17198 |
DT |
denotes |
the |
T4907 |
17211-17217 |
NN |
denotes |
strain |
T4908 |
17199-17203 |
JJ |
denotes |
same |
T4909 |
17204-17210 |
JJ |
denotes |
inbred |
T4910 |
17218-17219 |
-LRB- |
denotes |
( |
T4911 |
17219-17225 |
NN |
denotes |
Figure |
T4912 |
17226-17227 |
CD |
denotes |
3 |
T4913 |
17227-17228 |
-RRB- |
denotes |
) |
T4914 |
17228-17229 |
. |
denotes |
. |
T4915 |
17229-17402 |
sentence |
denotes |
These genes include two olfactory receptors with more than 20 matching cDNAs, two with one or two matching cDNAs and two class I olfactory receptors with no matching cDNAs. |
T4916 |
17230-17235 |
DT |
denotes |
These |
T4917 |
17236-17241 |
NNS |
denotes |
genes |
T4918 |
17242-17249 |
VBP |
denotes |
include |
T4919 |
17250-17253 |
CD |
denotes |
two |
T4920 |
17264-17273 |
NNS |
denotes |
receptors |
T4921 |
17254-17263 |
JJ |
denotes |
olfactory |
T4922 |
17274-17278 |
IN |
denotes |
with |
T4923 |
17279-17283 |
JJR |
denotes |
more |
T4924 |
17289-17291 |
CD |
denotes |
20 |
T4925 |
17284-17288 |
IN |
denotes |
than |
T4926 |
17301-17306 |
NNS |
denotes |
cDNAs |
T4927 |
17292-17300 |
JJ |
denotes |
matching |
T4928 |
17306-17308 |
, |
denotes |
, |
T4929 |
17308-17311 |
CD |
denotes |
two |
T4930 |
17312-17316 |
IN |
denotes |
with |
T4931 |
17317-17320 |
CD |
denotes |
one |
T4932 |
17337-17342 |
NNS |
denotes |
cDNAs |
T4933 |
17321-17323 |
CC |
denotes |
or |
T4934 |
17324-17327 |
CD |
denotes |
two |
T4935 |
17328-17336 |
JJ |
denotes |
matching |
T4936 |
17343-17346 |
CC |
denotes |
and |
T4937 |
17347-17350 |
CD |
denotes |
two |
T4938 |
17369-17378 |
NNS |
denotes |
receptors |
T4939 |
17351-17356 |
NN |
denotes |
class |
T4940 |
17357-17358 |
CD |
denotes |
I |
T4941 |
17359-17368 |
JJ |
denotes |
olfactory |
T4942 |
17379-17383 |
IN |
denotes |
with |
T4943 |
17384-17386 |
DT |
denotes |
no |
T4944 |
17396-17401 |
NNS |
denotes |
cDNAs |
T4945 |
17387-17395 |
JJ |
denotes |
matching |
T4946 |
17401-17402 |
. |
denotes |
. |
T4947 |
17402-17629 |
sentence |
denotes |
In these assays, we measure transcript level per genomic copy of the gene by comparing how well a gene-specific primer pair amplifies reverse-transcribed RNA, relative to a standard curve of amplification of mouse genomic DNA. |
T4948 |
17403-17405 |
IN |
denotes |
In |
T4949 |
17423-17430 |
VBP |
denotes |
measure |
T4950 |
17406-17411 |
DT |
denotes |
these |
T4951 |
17412-17418 |
NNS |
denotes |
assays |
T4952 |
17418-17420 |
, |
denotes |
, |
T4953 |
17420-17422 |
PRP |
denotes |
we |
T4954 |
17431-17441 |
NN |
denotes |
transcript |
T4955 |
17442-17447 |
NN |
denotes |
level |
T4956 |
17448-17451 |
IN |
denotes |
per |
T4957 |
17452-17459 |
JJ |
denotes |
genomic |
T4958 |
17460-17464 |
NN |
denotes |
copy |
T4959 |
17465-17467 |
IN |
denotes |
of |
T4960 |
17468-17471 |
DT |
denotes |
the |
T4961 |
17472-17476 |
NN |
denotes |
gene |
T4962 |
17477-17479 |
IN |
denotes |
by |
T4963 |
17480-17489 |
VBG |
denotes |
comparing |
T4964 |
17490-17493 |
WRB |
denotes |
how |
T4965 |
17494-17498 |
RB |
denotes |
well |
T4966 |
17527-17536 |
VBZ |
denotes |
amplifies |
T4967 |
17499-17500 |
DT |
denotes |
a |
T4968 |
17522-17526 |
NN |
denotes |
pair |
T4969 |
17501-17505 |
NN |
denotes |
gene |
T4970 |
17506-17514 |
JJ |
denotes |
specific |
T4971 |
17505-17506 |
HYPH |
denotes |
- |
T4972 |
17515-17521 |
NN |
denotes |
primer |
T4973 |
17537-17544 |
JJ |
denotes |
reverse |
T4974 |
17545-17556 |
VBN |
denotes |
transcribed |
T4975 |
17544-17545 |
HYPH |
denotes |
- |
T4976 |
17557-17560 |
NN |
denotes |
RNA |
T4977 |
17560-17562 |
, |
denotes |
, |
T4978 |
17562-17570 |
JJ |
denotes |
relative |
T4979 |
17571-17573 |
IN |
denotes |
to |
T4980 |
17574-17575 |
DT |
denotes |
a |
T4981 |
17585-17590 |
NN |
denotes |
curve |
T4982 |
17576-17584 |
JJ |
denotes |
standard |
T4983 |
17591-17593 |
IN |
denotes |
of |
T4984 |
17594-17607 |
NN |
denotes |
amplification |
T4985 |
17608-17610 |
IN |
denotes |
of |
T4986 |
17611-17616 |
NN |
denotes |
mouse |
T4987 |
17625-17628 |
NN |
denotes |
DNA |
T4988 |
17617-17624 |
JJ |
denotes |
genomic |
T4989 |
17628-17629 |
. |
denotes |
. |
T4990 |
17629-17742 |
sentence |
denotes |
We find that expression levels can vary by almost 300-fold between genes (for example, genes A and D, Figure 3). |
T4991 |
17630-17632 |
PRP |
denotes |
We |
T4992 |
17633-17637 |
VBP |
denotes |
find |
T4993 |
17638-17642 |
IN |
denotes |
that |
T4994 |
17665-17669 |
VB |
denotes |
vary |
T4995 |
17643-17653 |
NN |
denotes |
expression |
T4996 |
17654-17660 |
NNS |
denotes |
levels |
T4997 |
17661-17664 |
MD |
denotes |
can |
T4998 |
17670-17672 |
IN |
denotes |
by |
T4999 |
17673-17679 |
RB |
denotes |
almost |
T5000 |
17680-17688 |
JJ |
denotes |
300-fold |
T5001 |
17689-17696 |
IN |
denotes |
between |
T5002 |
17697-17702 |
NNS |
denotes |
genes |
T5003 |
17703-17704 |
-LRB- |
denotes |
( |
T5004 |
17732-17738 |
NN |
denotes |
Figure |
T5005 |
17704-17707 |
IN |
denotes |
for |
T5006 |
17708-17715 |
NN |
denotes |
example |
T5007 |
17715-17717 |
, |
denotes |
, |
T5008 |
17717-17722 |
NNS |
denotes |
genes |
T5009 |
17723-17724 |
NN |
denotes |
A |
T5010 |
17725-17728 |
CC |
denotes |
and |
T5011 |
17729-17730 |
NN |
denotes |
D |
T5012 |
17730-17732 |
, |
denotes |
, |
T5013 |
17739-17740 |
CD |
denotes |
3 |
T5014 |
17740-17741 |
-RRB- |
denotes |
) |
T5015 |
17741-17742 |
. |
denotes |
. |
T5016 |
17742-18039 |
sentence |
denotes |
However, cDNA numbers are not a good indicator of expression level, a discrepancy that is likely to be due to bias in the screen (we used degenerate primers to make the probes, which will favor some genes over others) and in the libraries (oligo-dT priming will favor genes with shorter 3' UTRs). |
T5017 |
17743-17750 |
RB |
denotes |
However |
T5018 |
17765-17768 |
VBP |
denotes |
are |
T5019 |
17750-17752 |
, |
denotes |
, |
T5020 |
17752-17756 |
NN |
denotes |
cDNA |
T5021 |
17757-17764 |
NNS |
denotes |
numbers |
T5022 |
17769-17772 |
RB |
denotes |
not |
T5023 |
17773-17774 |
DT |
denotes |
a |
T5024 |
17780-17789 |
NN |
denotes |
indicator |
T5025 |
17775-17779 |
JJ |
denotes |
good |
T5026 |
17790-17792 |
IN |
denotes |
of |
T5027 |
17793-17803 |
NN |
denotes |
expression |
T5028 |
17804-17809 |
NN |
denotes |
level |
T5029 |
17809-17811 |
, |
denotes |
, |
T5030 |
17811-17812 |
DT |
denotes |
a |
T5031 |
17813-17824 |
NN |
denotes |
discrepancy |
T5032 |
17825-17829 |
WDT |
denotes |
that |
T5033 |
17830-17832 |
VBZ |
denotes |
is |
T5034 |
17833-17839 |
JJ |
denotes |
likely |
T5035 |
17840-17842 |
TO |
denotes |
to |
T5036 |
17843-17845 |
VB |
denotes |
be |
T5037 |
17846-17849 |
IN |
denotes |
due |
T5038 |
17850-17852 |
IN |
denotes |
to |
T5039 |
17853-17857 |
NN |
denotes |
bias |
T5040 |
17858-17860 |
IN |
denotes |
in |
T5041 |
17861-17864 |
DT |
denotes |
the |
T5042 |
17865-17871 |
NN |
denotes |
screen |
T5043 |
17872-17873 |
-LRB- |
denotes |
( |
T5044 |
17876-17880 |
VBD |
denotes |
used |
T5045 |
17873-17875 |
PRP |
denotes |
we |
T5046 |
17881-17891 |
JJ |
denotes |
degenerate |
T5047 |
17892-17899 |
NNS |
denotes |
primers |
T5048 |
17900-17902 |
TO |
denotes |
to |
T5049 |
17903-17907 |
VB |
denotes |
make |
T5050 |
17908-17911 |
DT |
denotes |
the |
T5051 |
17912-17918 |
NNS |
denotes |
probes |
T5052 |
17918-17920 |
, |
denotes |
, |
T5053 |
17920-17925 |
WDT |
denotes |
which |
T5054 |
17931-17936 |
VB |
denotes |
favor |
T5055 |
17926-17930 |
MD |
denotes |
will |
T5056 |
17937-17941 |
DT |
denotes |
some |
T5057 |
17942-17947 |
NNS |
denotes |
genes |
T5058 |
17948-17952 |
IN |
denotes |
over |
T5059 |
17953-17959 |
NNS |
denotes |
others |
T5060 |
17959-17960 |
-RRB- |
denotes |
) |
T5061 |
17961-17964 |
CC |
denotes |
and |
T5062 |
17965-17967 |
IN |
denotes |
in |
T5063 |
17968-17971 |
DT |
denotes |
the |
T5064 |
17972-17981 |
NNS |
denotes |
libraries |
T5065 |
17982-17983 |
-LRB- |
denotes |
( |
T5066 |
18005-18010 |
VB |
denotes |
favor |
T5067 |
17983-17988 |
NN |
denotes |
oligo |
T5068 |
17989-17991 |
NN |
denotes |
dT |
T5069 |
17988-17989 |
HYPH |
denotes |
- |
T5070 |
17992-17999 |
NN |
denotes |
priming |
T5071 |
18000-18004 |
MD |
denotes |
will |
T5072 |
18011-18016 |
NNS |
denotes |
genes |
T5073 |
18017-18021 |
IN |
denotes |
with |
T5074 |
18022-18029 |
JJR |
denotes |
shorter |
T5075 |
18033-18037 |
NNS |
denotes |
UTRs |
T5076 |
18030-18031 |
CD |
denotes |
3 |
T5077 |
18031-18032 |
SYM |
denotes |
' |
T5078 |
18037-18038 |
-RRB- |
denotes |
) |
T5079 |
18038-18039 |
. |
denotes |
. |
T5080 |
18039-18340 |
sentence |
denotes |
For example, we observe large expression differences in all three mice between two genes for which similar numbers of cDNAs were found (genes A and B, Figure 3), and conversely, similar expression levels between two genes with a ten-fold difference in number of cDNAs found (genes B and C, Figure 3). |
T5081 |
18040-18043 |
IN |
denotes |
For |
T5082 |
18056-18063 |
VBP |
denotes |
observe |
T5083 |
18044-18051 |
NN |
denotes |
example |
T5084 |
18051-18053 |
, |
denotes |
, |
T5085 |
18053-18055 |
PRP |
denotes |
we |
T5086 |
18064-18069 |
JJ |
denotes |
large |
T5087 |
18081-18092 |
NNS |
denotes |
differences |
T5088 |
18070-18080 |
NN |
denotes |
expression |
T5089 |
18093-18095 |
IN |
denotes |
in |
T5090 |
18096-18099 |
PDT |
denotes |
all |
T5091 |
18106-18110 |
NNS |
denotes |
mice |
T5092 |
18100-18105 |
CD |
denotes |
three |
T5093 |
18111-18118 |
IN |
denotes |
between |
T5094 |
18119-18122 |
CD |
denotes |
two |
T5095 |
18123-18128 |
NNS |
denotes |
genes |
T5096 |
18129-18132 |
IN |
denotes |
for |
T5097 |
18169-18174 |
VBN |
denotes |
found |
T5098 |
18133-18138 |
WDT |
denotes |
which |
T5099 |
18139-18146 |
JJ |
denotes |
similar |
T5100 |
18147-18154 |
NNS |
denotes |
numbers |
T5101 |
18155-18157 |
IN |
denotes |
of |
T5102 |
18158-18163 |
NNS |
denotes |
cDNAs |
T5103 |
18164-18168 |
VBD |
denotes |
were |
T5104 |
18175-18176 |
-LRB- |
denotes |
( |
T5105 |
18176-18181 |
NNS |
denotes |
genes |
T5106 |
18182-18183 |
NN |
denotes |
A |
T5107 |
18184-18187 |
CC |
denotes |
and |
T5108 |
18188-18189 |
NN |
denotes |
B |
T5109 |
18189-18191 |
, |
denotes |
, |
T5110 |
18191-18197 |
NN |
denotes |
Figure |
T5111 |
18198-18199 |
CD |
denotes |
3 |
T5112 |
18199-18200 |
-RRB- |
denotes |
) |
T5113 |
18200-18202 |
, |
denotes |
, |
T5114 |
18202-18205 |
CC |
denotes |
and |
T5115 |
18206-18216 |
RB |
denotes |
conversely |
T5116 |
18237-18243 |
NNS |
denotes |
levels |
T5117 |
18216-18218 |
, |
denotes |
, |
T5118 |
18218-18225 |
JJ |
denotes |
similar |
T5119 |
18226-18236 |
NN |
denotes |
expression |
T5120 |
18244-18251 |
IN |
denotes |
between |
T5121 |
18252-18255 |
CD |
denotes |
two |
T5122 |
18256-18261 |
NNS |
denotes |
genes |
T5123 |
18262-18266 |
IN |
denotes |
with |
T5124 |
18267-18268 |
DT |
denotes |
a |
T5125 |
18278-18288 |
NN |
denotes |
difference |
T5126 |
18269-18277 |
JJ |
denotes |
ten-fold |
T5127 |
18289-18291 |
IN |
denotes |
in |
T5128 |
18292-18298 |
NN |
denotes |
number |
T5129 |
18299-18301 |
IN |
denotes |
of |
T5130 |
18302-18307 |
NNS |
denotes |
cDNAs |
T5131 |
18308-18313 |
VBN |
denotes |
found |
T5132 |
18314-18315 |
-LRB- |
denotes |
( |
T5133 |
18315-18320 |
NNS |
denotes |
genes |
T5134 |
18321-18322 |
NN |
denotes |
B |
T5135 |
18323-18326 |
CC |
denotes |
and |
T5136 |
18327-18328 |
NN |
denotes |
C |
T5137 |
18328-18330 |
, |
denotes |
, |
T5138 |
18330-18336 |
NN |
denotes |
Figure |
T5139 |
18337-18338 |
CD |
denotes |
3 |
T5140 |
18338-18339 |
-RRB- |
denotes |
) |
T5141 |
18339-18340 |
. |
denotes |
. |
T5142 |
18340-18693 |
sentence |
denotes |
Expression levels are mostly consistent between different mice: we find similar expression-level differences between olfactory receptor genes in all three mice examined (that is, the rank order of the six genes is similar among the three mice), although there is variation in expression level of some genes between mice (for example, gene E, Figure 3). |
T5143 |
18341-18351 |
NN |
denotes |
Expression |
T5144 |
18352-18358 |
NNS |
denotes |
levels |
T5145 |
18359-18362 |
VBP |
denotes |
are |
T5146 |
18408-18412 |
VBP |
denotes |
find |
T5147 |
18363-18369 |
RB |
denotes |
mostly |
T5148 |
18370-18380 |
JJ |
denotes |
consistent |
T5149 |
18381-18388 |
IN |
denotes |
between |
T5150 |
18389-18398 |
JJ |
denotes |
different |
T5151 |
18399-18403 |
NNS |
denotes |
mice |
T5152 |
18403-18405 |
: |
denotes |
: |
T5153 |
18405-18407 |
PRP |
denotes |
we |
T5154 |
18413-18420 |
JJ |
denotes |
similar |
T5155 |
18438-18449 |
NNS |
denotes |
differences |
T5156 |
18421-18431 |
NN |
denotes |
expression |
T5157 |
18432-18437 |
NN |
denotes |
level |
T5158 |
18431-18432 |
HYPH |
denotes |
- |
T5159 |
18450-18457 |
IN |
denotes |
between |
T5160 |
18458-18467 |
JJ |
denotes |
olfactory |
T5161 |
18468-18476 |
NN |
denotes |
receptor |
T5162 |
18477-18482 |
NNS |
denotes |
genes |
T5163 |
18483-18485 |
IN |
denotes |
in |
T5164 |
18486-18489 |
DT |
denotes |
all |
T5165 |
18496-18500 |
NNS |
denotes |
mice |
T5166 |
18490-18495 |
CD |
denotes |
three |
T5167 |
18501-18509 |
VBN |
denotes |
examined |
T5168 |
18510-18511 |
-LRB- |
denotes |
( |
T5169 |
18552-18554 |
VBZ |
denotes |
is |
T5170 |
18511-18515 |
RB |
denotes |
that |
T5171 |
18516-18518 |
RB |
denotes |
is |
T5172 |
18518-18520 |
, |
denotes |
, |
T5173 |
18520-18523 |
DT |
denotes |
the |
T5174 |
18529-18534 |
NN |
denotes |
order |
T5175 |
18524-18528 |
NN |
denotes |
rank |
T5176 |
18535-18537 |
IN |
denotes |
of |
T5177 |
18538-18541 |
DT |
denotes |
the |
T5178 |
18546-18551 |
NNS |
denotes |
genes |
T5179 |
18542-18545 |
CD |
denotes |
six |
T5180 |
18555-18562 |
JJ |
denotes |
similar |
T5181 |
18563-18568 |
IN |
denotes |
among |
T5182 |
18569-18572 |
DT |
denotes |
the |
T5183 |
18579-18583 |
NNS |
denotes |
mice |
T5184 |
18573-18578 |
CD |
denotes |
three |
T5185 |
18583-18584 |
-RRB- |
denotes |
) |
T5186 |
18584-18586 |
, |
denotes |
, |
T5187 |
18586-18594 |
IN |
denotes |
although |
T5188 |
18601-18603 |
VBZ |
denotes |
is |
T5189 |
18595-18600 |
EX |
denotes |
there |
T5190 |
18604-18613 |
NN |
denotes |
variation |
T5191 |
18614-18616 |
IN |
denotes |
in |
T5192 |
18617-18627 |
NN |
denotes |
expression |
T5193 |
18628-18633 |
NN |
denotes |
level |
T5194 |
18634-18636 |
IN |
denotes |
of |
T5195 |
18637-18641 |
DT |
denotes |
some |
T5196 |
18642-18647 |
NNS |
denotes |
genes |
T5197 |
18648-18655 |
IN |
denotes |
between |
T5198 |
18656-18660 |
NNS |
denotes |
mice |
T5199 |
18661-18662 |
-LRB- |
denotes |
( |
T5200 |
18683-18689 |
NN |
denotes |
Figure |
T5201 |
18662-18665 |
IN |
denotes |
for |
T5202 |
18666-18673 |
NN |
denotes |
example |
T5203 |
18673-18675 |
, |
denotes |
, |
T5204 |
18675-18679 |
NN |
denotes |
gene |
T5205 |
18680-18681 |
NN |
denotes |
E |
T5206 |
18681-18683 |
, |
denotes |
, |
T5207 |
18690-18691 |
CD |
denotes |
3 |
T5208 |
18691-18692 |
-RRB- |
denotes |
) |
T5209 |
18692-18693 |
. |
denotes |
. |
T5210 |
18693-18923 |
sentence |
denotes |
In situ hybridization (Figure 4) shows that increased numbers of expressing cells account for some, but not all, of the difference in transcript levels between two of the genes tested by real-time PCR (genes A and D in Figure 3). |
T5211 |
18694-18696 |
FW |
denotes |
In |
T5212 |
18697-18701 |
FW |
denotes |
situ |
T5213 |
18702-18715 |
NN |
denotes |
hybridization |
T5214 |
18727-18732 |
VBZ |
denotes |
shows |
T5215 |
18716-18717 |
-LRB- |
denotes |
( |
T5216 |
18717-18723 |
NN |
denotes |
Figure |
T5217 |
18724-18725 |
CD |
denotes |
4 |
T5218 |
18725-18726 |
-RRB- |
denotes |
) |
T5219 |
18733-18737 |
IN |
denotes |
that |
T5220 |
18776-18783 |
VBP |
denotes |
account |
T5221 |
18738-18747 |
VBN |
denotes |
increased |
T5222 |
18748-18755 |
NNS |
denotes |
numbers |
T5223 |
18756-18758 |
IN |
denotes |
of |
T5224 |
18759-18769 |
VBG |
denotes |
expressing |
T5225 |
18770-18775 |
NNS |
denotes |
cells |
T5226 |
18784-18787 |
IN |
denotes |
for |
T5227 |
18788-18792 |
DT |
denotes |
some |
T5228 |
18792-18794 |
, |
denotes |
, |
T5229 |
18794-18797 |
CC |
denotes |
but |
T5230 |
18798-18801 |
RB |
denotes |
not |
T5231 |
18802-18805 |
DT |
denotes |
all |
T5232 |
18805-18807 |
, |
denotes |
, |
T5233 |
18807-18809 |
IN |
denotes |
of |
T5234 |
18810-18813 |
DT |
denotes |
the |
T5235 |
18814-18824 |
NN |
denotes |
difference |
T5236 |
18825-18827 |
IN |
denotes |
in |
T5237 |
18828-18838 |
NN |
denotes |
transcript |
T5238 |
18839-18845 |
NNS |
denotes |
levels |
T5239 |
18846-18853 |
IN |
denotes |
between |
T5240 |
18854-18857 |
CD |
denotes |
two |
T5241 |
18858-18860 |
IN |
denotes |
of |
T5242 |
18861-18864 |
DT |
denotes |
the |
T5243 |
18865-18870 |
NNS |
denotes |
genes |
T5244 |
18871-18877 |
VBN |
denotes |
tested |
T5245 |
18878-18880 |
IN |
denotes |
by |
T5246 |
18881-18885 |
JJ |
denotes |
real |
T5247 |
18886-18890 |
NN |
denotes |
time |
T5248 |
18885-18886 |
HYPH |
denotes |
- |
T5249 |
18891-18894 |
NN |
denotes |
PCR |
T5250 |
18895-18896 |
-LRB- |
denotes |
( |
T5251 |
18896-18901 |
NNS |
denotes |
genes |
T5252 |
18902-18903 |
NN |
denotes |
A |
T5253 |
18904-18907 |
CC |
denotes |
and |
T5254 |
18908-18909 |
NN |
denotes |
D |
T5255 |
18910-18912 |
IN |
denotes |
in |
T5256 |
18913-18919 |
NN |
denotes |
Figure |
T5257 |
18920-18921 |
CD |
denotes |
3 |
T5258 |
18921-18922 |
-RRB- |
denotes |
) |
T5259 |
18922-18923 |
. |
denotes |
. |
T5260 |
18923-19068 |
sentence |
denotes |
We hybridized alternate coronal serial sections spanning an entire olfactory epithelium of a young mouse (P6) with probes for gene A and gene D. |
T5261 |
18924-18926 |
PRP |
denotes |
We |
T5262 |
18927-18937 |
VBD |
denotes |
hybridized |
T5263 |
18938-18947 |
JJ |
denotes |
alternate |
T5264 |
18963-18971 |
NNS |
denotes |
sections |
T5265 |
18948-18955 |
JJ |
denotes |
coronal |
T5266 |
18956-18962 |
JJ |
denotes |
serial |
T5267 |
18972-18980 |
VBG |
denotes |
spanning |
T5268 |
18981-18983 |
DT |
denotes |
an |
T5269 |
19001-19011 |
NN |
denotes |
epithelium |
T5270 |
18984-18990 |
JJ |
denotes |
entire |
T5271 |
18991-19000 |
JJ |
denotes |
olfactory |
T5272 |
19012-19014 |
IN |
denotes |
of |
T5273 |
19015-19016 |
DT |
denotes |
a |
T5274 |
19023-19028 |
NN |
denotes |
mouse |
T5275 |
19017-19022 |
JJ |
denotes |
young |
T5276 |
19029-19030 |
-LRB- |
denotes |
( |
T5277 |
19030-19032 |
NN |
denotes |
P6 |
T5278 |
19032-19033 |
-RRB- |
denotes |
) |
T5279 |
19034-19038 |
IN |
denotes |
with |
T5280 |
19039-19045 |
NNS |
denotes |
probes |
T5281 |
19046-19049 |
IN |
denotes |
for |
T5282 |
19050-19054 |
NN |
denotes |
gene |
T5283 |
19055-19056 |
NN |
denotes |
A |
T5284 |
19057-19060 |
CC |
denotes |
and |
T5285 |
19061-19065 |
NN |
denotes |
gene |
T5286 |
19066-19067 |
NN |
denotes |
D |
T5287 |
19067-19068 |
. |
denotes |
. |
T5288 |
19068-19205 |
sentence |
denotes |
Southern blot and BLAST analyses show that both probes are likely to hybridize to their intended target genes and no others (not shown). |
T5289 |
19069-19077 |
NNP |
denotes |
Southern |
T5290 |
19078-19082 |
NN |
denotes |
blot |
T5291 |
19093-19101 |
NNS |
denotes |
analyses |
T5292 |
19083-19086 |
CC |
denotes |
and |
T5293 |
19087-19092 |
NN |
denotes |
BLAST |
T5294 |
19102-19106 |
VBP |
denotes |
show |
T5295 |
19107-19111 |
IN |
denotes |
that |
T5296 |
19124-19127 |
VBP |
denotes |
are |
T5297 |
19112-19116 |
DT |
denotes |
both |
T5298 |
19117-19123 |
NNS |
denotes |
probes |
T5299 |
19128-19134 |
JJ |
denotes |
likely |
T5300 |
19135-19137 |
TO |
denotes |
to |
T5301 |
19138-19147 |
VB |
denotes |
hybridize |
T5302 |
19148-19150 |
IN |
denotes |
to |
T5303 |
19151-19156 |
PRP$ |
denotes |
their |
T5304 |
19173-19178 |
NNS |
denotes |
genes |
T5305 |
19157-19165 |
VBN |
denotes |
intended |
T5306 |
19166-19172 |
NN |
denotes |
target |
T5307 |
19179-19182 |
CC |
denotes |
and |
T5308 |
19183-19185 |
DT |
denotes |
no |
T5309 |
19186-19192 |
NNS |
denotes |
others |
T5310 |
19193-19194 |
-LRB- |
denotes |
( |
T5311 |
19198-19203 |
VBN |
denotes |
shown |
T5312 |
19194-19197 |
RB |
denotes |
not |
T5313 |
19203-19204 |
-RRB- |
denotes |
) |
T5314 |
19204-19205 |
. |
denotes |
. |
T5315 |
19205-19320 |
sentence |
denotes |
Gene A is expressed in zone 4 of the epithelium according to the nomenclature of Sullivan et al. [32] (Figure 4a). |
T5316 |
19206-19210 |
NN |
denotes |
Gene |
T5317 |
19211-19212 |
NN |
denotes |
A |
T5318 |
19216-19225 |
VBN |
denotes |
expressed |
T5319 |
19213-19215 |
VBZ |
denotes |
is |
T5320 |
19226-19228 |
IN |
denotes |
in |
T5321 |
19229-19233 |
NN |
denotes |
zone |
T5322 |
19234-19235 |
CD |
denotes |
4 |
T5323 |
19236-19238 |
IN |
denotes |
of |
T5324 |
19239-19242 |
DT |
denotes |
the |
T5325 |
19243-19253 |
NN |
denotes |
epithelium |
T5326 |
19254-19263 |
VBG |
denotes |
according |
T5327 |
19264-19266 |
IN |
denotes |
to |
T5328 |
19267-19270 |
DT |
denotes |
the |
T5329 |
19271-19283 |
NN |
denotes |
nomenclature |
T5330 |
19284-19286 |
IN |
denotes |
of |
T5331 |
19287-19295 |
NNP |
denotes |
Sullivan |
T5332 |
19296-19298 |
FW |
denotes |
et |
T5333 |
19299-19302 |
FW |
denotes |
al. |
T5334 |
19303-19304 |
-LRB- |
denotes |
[ |
T5335 |
19304-19306 |
CD |
denotes |
32 |
T5336 |
19306-19307 |
-RRB- |
denotes |
] |
T5337 |
19308-19309 |
-LRB- |
denotes |
( |
T5338 |
19309-19315 |
NN |
denotes |
Figure |
T5339 |
19316-19318 |
CD |
denotes |
4a |
T5340 |
19318-19319 |
-RRB- |
denotes |
) |
T5341 |
19319-19320 |
. |
denotes |
. |
T5342 |
19320-19652 |
sentence |
denotes |
The expression pattern of gene D does not correspond to any of the four 'classical' olfactory epithelial zones [14,15,32]: positive cells are found in regions of endoturbinates II and III and ectoturbinate 3, resembling the expression pattern seen previously for the OR37 subfamily and ORZ6 olfactory receptors [33,34] (Figure 4b). |
T5343 |
19321-19324 |
DT |
denotes |
The |
T5344 |
19336-19343 |
NN |
denotes |
pattern |
T5345 |
19325-19335 |
NN |
denotes |
expression |
T5346 |
19363-19373 |
VB |
denotes |
correspond |
T5347 |
19344-19346 |
IN |
denotes |
of |
T5348 |
19347-19351 |
NN |
denotes |
gene |
T5349 |
19352-19353 |
NN |
denotes |
D |
T5350 |
19354-19358 |
VBZ |
denotes |
does |
T5351 |
19359-19362 |
RB |
denotes |
not |
T5352 |
19463-19468 |
VBN |
denotes |
found |
T5353 |
19374-19376 |
IN |
denotes |
to |
T5354 |
19377-19380 |
DT |
denotes |
any |
T5355 |
19381-19383 |
IN |
denotes |
of |
T5356 |
19384-19387 |
DT |
denotes |
the |
T5357 |
19426-19431 |
NNS |
denotes |
zones |
T5358 |
19388-19392 |
CD |
denotes |
four |
T5359 |
19393-19394 |
`` |
denotes |
' |
T5360 |
19394-19403 |
JJ |
denotes |
classical |
T5361 |
19403-19404 |
'' |
denotes |
' |
T5362 |
19405-19414 |
JJ |
denotes |
olfactory |
T5363 |
19415-19425 |
JJ |
denotes |
epithelial |
T5364 |
19432-19433 |
-LRB- |
denotes |
[ |
T5365 |
19439-19441 |
CD |
denotes |
32 |
T5366 |
19433-19435 |
CD |
denotes |
14 |
T5367 |
19435-19436 |
, |
denotes |
, |
T5368 |
19436-19438 |
CD |
denotes |
15 |
T5369 |
19438-19439 |
, |
denotes |
, |
T5370 |
19441-19442 |
-RRB- |
denotes |
] |
T5371 |
19442-19444 |
: |
denotes |
: |
T5372 |
19444-19452 |
JJ |
denotes |
positive |
T5373 |
19453-19458 |
NNS |
denotes |
cells |
T5374 |
19459-19462 |
VBP |
denotes |
are |
T5375 |
19469-19471 |
IN |
denotes |
in |
T5376 |
19472-19479 |
NNS |
denotes |
regions |
T5377 |
19480-19482 |
IN |
denotes |
of |
T5378 |
19483-19497 |
NNS |
denotes |
endoturbinates |
T5379 |
19498-19500 |
CD |
denotes |
II |
T5380 |
19501-19504 |
CC |
denotes |
and |
T5381 |
19505-19508 |
CD |
denotes |
III |
T5382 |
19509-19512 |
CC |
denotes |
and |
T5383 |
19513-19526 |
NN |
denotes |
ectoturbinate |
T5384 |
19527-19528 |
CD |
denotes |
3 |
T5385 |
19528-19530 |
, |
denotes |
, |
T5386 |
19530-19540 |
VBG |
denotes |
resembling |
T5387 |
19541-19544 |
DT |
denotes |
the |
T5388 |
19556-19563 |
NN |
denotes |
pattern |
T5389 |
19545-19555 |
NN |
denotes |
expression |
T5390 |
19564-19568 |
VBN |
denotes |
seen |
T5391 |
19569-19579 |
RB |
denotes |
previously |
T5392 |
19580-19583 |
IN |
denotes |
for |
T5393 |
19584-19587 |
DT |
denotes |
the |
T5394 |
19593-19602 |
NN |
denotes |
subfamily |
T5395 |
19588-19592 |
NN |
denotes |
OR37 |
T5396 |
19603-19606 |
CC |
denotes |
and |
T5397 |
19607-19611 |
NN |
denotes |
ORZ6 |
T5398 |
19622-19631 |
NNS |
denotes |
receptors |
T5399 |
19612-19621 |
JJ |
denotes |
olfactory |
T5400 |
19632-19633 |
-LRB- |
denotes |
[ |
T5401 |
19636-19638 |
CD |
denotes |
34 |
T5402 |
19633-19635 |
CD |
denotes |
33 |
T5403 |
19635-19636 |
, |
denotes |
, |
T5404 |
19638-19639 |
-RRB- |
denotes |
] |
T5405 |
19640-19641 |
-LRB- |
denotes |
( |
T5406 |
19641-19647 |
NN |
denotes |
Figure |
T5407 |
19648-19650 |
CD |
denotes |
4b |
T5408 |
19650-19651 |
-RRB- |
denotes |
) |
T5409 |
19651-19652 |
. |
denotes |
. |
T5410 |
19652-19880 |
sentence |
denotes |
Counting the total number of positive cells in alternate sections across the entire epithelium, we find that gene A is expressed in 2,905 cells, about 12 times more cells than gene D, which is expressed in a total of 249 cells. |
T5411 |
19653-19661 |
VBG |
denotes |
Counting |
T5412 |
19752-19756 |
VBP |
denotes |
find |
T5413 |
19662-19665 |
DT |
denotes |
the |
T5414 |
19672-19678 |
NN |
denotes |
number |
T5415 |
19666-19671 |
JJ |
denotes |
total |
T5416 |
19679-19681 |
IN |
denotes |
of |
T5417 |
19682-19690 |
JJ |
denotes |
positive |
T5418 |
19691-19696 |
NNS |
denotes |
cells |
T5419 |
19697-19699 |
IN |
denotes |
in |
T5420 |
19700-19709 |
JJ |
denotes |
alternate |
T5421 |
19710-19718 |
NNS |
denotes |
sections |
T5422 |
19719-19725 |
IN |
denotes |
across |
T5423 |
19726-19729 |
DT |
denotes |
the |
T5424 |
19737-19747 |
NN |
denotes |
epithelium |
T5425 |
19730-19736 |
JJ |
denotes |
entire |
T5426 |
19747-19749 |
, |
denotes |
, |
T5427 |
19749-19751 |
PRP |
denotes |
we |
T5428 |
19757-19761 |
IN |
denotes |
that |
T5429 |
19772-19781 |
VBN |
denotes |
expressed |
T5430 |
19762-19766 |
NN |
denotes |
gene |
T5431 |
19767-19768 |
NN |
denotes |
A |
T5432 |
19769-19771 |
VBZ |
denotes |
is |
T5433 |
19782-19784 |
IN |
denotes |
in |
T5434 |
19785-19790 |
CD |
denotes |
2,905 |
T5435 |
19791-19796 |
NNS |
denotes |
cells |
T5436 |
19796-19798 |
, |
denotes |
, |
T5437 |
19798-19803 |
RB |
denotes |
about |
T5438 |
19804-19806 |
CD |
denotes |
12 |
T5439 |
19818-19823 |
NNS |
denotes |
cells |
T5440 |
19807-19812 |
NNS |
denotes |
times |
T5441 |
19813-19817 |
JJR |
denotes |
more |
T5442 |
19824-19828 |
IN |
denotes |
than |
T5443 |
19829-19833 |
NN |
denotes |
gene |
T5444 |
19834-19835 |
NN |
denotes |
D |
T5445 |
19835-19837 |
, |
denotes |
, |
T5446 |
19837-19842 |
WDT |
denotes |
which |
T5447 |
19846-19855 |
VBN |
denotes |
expressed |
T5448 |
19843-19845 |
VBZ |
denotes |
is |
T5449 |
19856-19858 |
IN |
denotes |
in |
T5450 |
19859-19860 |
DT |
denotes |
a |
T5451 |
19861-19866 |
NN |
denotes |
total |
T5452 |
19867-19869 |
IN |
denotes |
of |
T5453 |
19870-19873 |
CD |
denotes |
249 |
T5454 |
19874-19879 |
NNS |
denotes |
cells |
T5455 |
19879-19880 |
. |
denotes |
. |
T5456 |
19880-20177 |
sentence |
denotes |
This 12-fold difference in numbers of expressing cells does not account for the almost 300-fold difference in RNA levels observed by real-time PCR, implying that the transcript level per expressing cell for gene A is about 25 times higher than transcript level in each expressing cell for gene D. |
T5457 |
19881-19885 |
DT |
denotes |
This |
T5458 |
19894-19904 |
NN |
denotes |
difference |
T5459 |
19886-19893 |
JJ |
denotes |
12-fold |
T5460 |
19945-19952 |
VB |
denotes |
account |
T5461 |
19905-19907 |
IN |
denotes |
in |
T5462 |
19908-19915 |
NNS |
denotes |
numbers |
T5463 |
19916-19918 |
IN |
denotes |
of |
T5464 |
19919-19929 |
VBG |
denotes |
expressing |
T5465 |
19930-19935 |
NNS |
denotes |
cells |
T5466 |
19936-19940 |
VBZ |
denotes |
does |
T5467 |
19941-19944 |
RB |
denotes |
not |
T5468 |
19953-19956 |
IN |
denotes |
for |
T5469 |
19957-19960 |
DT |
denotes |
the |
T5470 |
19977-19987 |
NN |
denotes |
difference |
T5471 |
19961-19967 |
RB |
denotes |
almost |
T5472 |
19968-19976 |
JJ |
denotes |
300-fold |
T5473 |
19988-19990 |
IN |
denotes |
in |
T5474 |
19991-19994 |
NN |
denotes |
RNA |
T5475 |
19995-20001 |
NNS |
denotes |
levels |
T5476 |
20002-20010 |
VBN |
denotes |
observed |
T5477 |
20011-20013 |
IN |
denotes |
by |
T5478 |
20014-20018 |
JJ |
denotes |
real |
T5479 |
20019-20023 |
NN |
denotes |
time |
T5480 |
20018-20019 |
HYPH |
denotes |
- |
T5481 |
20024-20027 |
NN |
denotes |
PCR |
T5482 |
20027-20029 |
, |
denotes |
, |
T5483 |
20029-20037 |
VBG |
denotes |
implying |
T5484 |
20038-20042 |
IN |
denotes |
that |
T5485 |
20095-20097 |
VBZ |
denotes |
is |
T5486 |
20043-20046 |
DT |
denotes |
the |
T5487 |
20058-20063 |
NN |
denotes |
level |
T5488 |
20047-20057 |
NN |
denotes |
transcript |
T5489 |
20064-20067 |
IN |
denotes |
per |
T5490 |
20068-20078 |
VBG |
denotes |
expressing |
T5491 |
20079-20083 |
NN |
denotes |
cell |
T5492 |
20084-20087 |
IN |
denotes |
for |
T5493 |
20088-20092 |
NN |
denotes |
gene |
T5494 |
20093-20094 |
NN |
denotes |
A |
T5495 |
20098-20103 |
IN |
denotes |
about |
T5496 |
20104-20106 |
CD |
denotes |
25 |
T5497 |
20113-20119 |
JJR |
denotes |
higher |
T5498 |
20107-20112 |
NNS |
denotes |
times |
T5553 |
20414-20416 |
IN |
denotes |
in |
T5554 |
20417-20421 |
JJR |
denotes |
more |
T5555 |
20422-20427 |
NNS |
denotes |
cells |
T5499 |
20120-20124 |
IN |
denotes |
than |
T5500 |
20125-20135 |
NN |
denotes |
transcript |
T5501 |
20136-20141 |
NN |
denotes |
level |
T5502 |
20142-20144 |
IN |
denotes |
in |
T5503 |
20145-20149 |
DT |
denotes |
each |
T5504 |
20161-20165 |
NN |
denotes |
cell |
T5505 |
20150-20160 |
VBG |
denotes |
expressing |
T5506 |
20166-20169 |
IN |
denotes |
for |
T5507 |
20170-20174 |
NN |
denotes |
gene |
T5508 |
20175-20176 |
NN |
denotes |
D |
T5509 |
20176-20177 |
. |
denotes |
. |
T5510 |
20177-20380 |
sentence |
denotes |
We note that hybridization intensities per positive neuron appear stronger for gene A than gene D after comparable exposure times, in accordance with the idea that transcript levels are higher per cell. |
T5511 |
20178-20180 |
PRP |
denotes |
We |
T5512 |
20181-20185 |
VBP |
denotes |
note |
T5513 |
20186-20190 |
IN |
denotes |
that |
T5514 |
20237-20243 |
VBP |
denotes |
appear |
T5515 |
20191-20204 |
NN |
denotes |
hybridization |
T5516 |
20205-20216 |
NNS |
denotes |
intensities |
T5517 |
20217-20220 |
IN |
denotes |
per |
T5518 |
20221-20229 |
JJ |
denotes |
positive |
T5519 |
20230-20236 |
NN |
denotes |
neuron |
T5520 |
20244-20252 |
JJR |
denotes |
stronger |
T5521 |
20253-20256 |
IN |
denotes |
for |
T5522 |
20257-20261 |
NN |
denotes |
gene |
T5523 |
20262-20263 |
NN |
denotes |
A |
T5524 |
20264-20268 |
IN |
denotes |
than |
T5525 |
20269-20273 |
NN |
denotes |
gene |
T5526 |
20274-20275 |
NN |
denotes |
D |
T5527 |
20276-20281 |
IN |
denotes |
after |
T5528 |
20282-20292 |
JJ |
denotes |
comparable |
T5529 |
20302-20307 |
NNS |
denotes |
times |
T5530 |
20293-20301 |
NN |
denotes |
exposure |
T5531 |
20307-20309 |
, |
denotes |
, |
T5532 |
20309-20311 |
IN |
denotes |
in |
T5533 |
20312-20322 |
NN |
denotes |
accordance |
T5534 |
20323-20327 |
IN |
denotes |
with |
T5535 |
20328-20331 |
DT |
denotes |
the |
T5536 |
20332-20336 |
NN |
denotes |
idea |
T5537 |
20337-20341 |
IN |
denotes |
that |
T5538 |
20360-20363 |
VBP |
denotes |
are |
T5539 |
20342-20352 |
NN |
denotes |
transcript |
T5540 |
20353-20359 |
NNS |
denotes |
levels |
T5541 |
20364-20370 |
JJR |
denotes |
higher |
T5542 |
20371-20374 |
IN |
denotes |
per |
T5543 |
20375-20379 |
NN |
denotes |
cell |
T5544 |
20379-20380 |
. |
denotes |
. |
T5545 |
20380-20578 |
sentence |
denotes |
Thus, we suggest that expression in more cells and in higher levels per cell together account for the almost 300-fold higher olfactory epithelial RNA levels of gene A relative to gene D (Figure 3). |
T5546 |
20381-20385 |
RB |
denotes |
Thus |
T5547 |
20390-20397 |
VBP |
denotes |
suggest |
T5548 |
20385-20387 |
, |
denotes |
, |
T5549 |
20387-20389 |
PRP |
denotes |
we |
T5550 |
20398-20402 |
IN |
denotes |
that |
T5551 |
20467-20474 |
VBP |
denotes |
account |
T5552 |
20403-20413 |
NN |
denotes |
expression |
T5556 |
20428-20431 |
CC |
denotes |
and |
T5557 |
20432-20434 |
IN |
denotes |
in |
T5558 |
20435-20441 |
JJR |
denotes |
higher |
T5559 |
20442-20448 |
NNS |
denotes |
levels |
T5560 |
20449-20452 |
IN |
denotes |
per |
T5561 |
20453-20457 |
NN |
denotes |
cell |
T5562 |
20458-20466 |
RB |
denotes |
together |
T5563 |
20475-20478 |
IN |
denotes |
for |
T5564 |
20479-20482 |
DT |
denotes |
the |
T5565 |
20531-20537 |
NNS |
denotes |
levels |
T5566 |
20483-20489 |
RB |
denotes |
almost |
T5567 |
20490-20498 |
JJ |
denotes |
300-fold |
T5568 |
20499-20505 |
JJR |
denotes |
higher |
T5569 |
20506-20515 |
JJ |
denotes |
olfactory |
T5570 |
20527-20530 |
NN |
denotes |
RNA |
T5571 |
20516-20526 |
JJ |
denotes |
epithelial |
T5572 |
20538-20540 |
IN |
denotes |
of |
T5573 |
20541-20545 |
NN |
denotes |
gene |
T5574 |
20546-20547 |
NN |
denotes |
A |
T5575 |
20548-20556 |
JJ |
denotes |
relative |
T5576 |
20557-20559 |
IN |
denotes |
to |
T5577 |
20560-20564 |
NN |
denotes |
gene |
T5578 |
20565-20566 |
NN |
denotes |
D |
T5579 |
20567-20568 |
-LRB- |
denotes |
( |
T5580 |
20568-20574 |
NN |
denotes |
Figure |
T5581 |
20575-20576 |
CD |
denotes |
3 |
T5582 |
20576-20577 |
-RRB- |
denotes |
) |
T5583 |
20577-20578 |
. |
denotes |
. |
T5714 |
20580-20584 |
RBS |
denotes |
Most |
T5715 |
20604-20609 |
NNS |
denotes |
genes |
T5716 |
20585-20594 |
JJ |
denotes |
olfactory |
T5717 |
20595-20603 |
NN |
denotes |
receptor |
T5718 |
20610-20614 |
VBP |
denotes |
have |
T5719 |
20615-20622 |
JJ |
denotes |
several |
T5720 |
20639-20647 |
NNS |
denotes |
isoforms |
T5721 |
20623-20638 |
JJ |
denotes |
transcriptional |
T5722 |
20647-20793 |
sentence |
denotes |
Our cDNA collection reveals that at least two thirds of the olfactory receptors sampled show alternative splicing of their 5' untranslated exons. |
T5723 |
20648-20651 |
PRP$ |
denotes |
Our |
T5724 |
20657-20667 |
NN |
denotes |
collection |
T5725 |
20652-20656 |
NN |
denotes |
cDNA |
T5726 |
20668-20675 |
VBZ |
denotes |
reveals |
T5727 |
20676-20680 |
IN |
denotes |
that |
T5728 |
20736-20740 |
VBP |
denotes |
show |
T5729 |
20681-20683 |
RB |
denotes |
at |
T5730 |
20690-20693 |
CD |
denotes |
two |
T5731 |
20684-20689 |
RBS |
denotes |
least |
T5732 |
20694-20700 |
NNS |
denotes |
thirds |
T5733 |
20701-20703 |
IN |
denotes |
of |
T5734 |
20704-20707 |
DT |
denotes |
the |
T5735 |
20718-20727 |
NNS |
denotes |
receptors |
T5736 |
20708-20717 |
JJ |
denotes |
olfactory |
T5737 |
20728-20735 |
VBN |
denotes |
sampled |
T5738 |
20741-20752 |
JJ |
denotes |
alternative |
T5739 |
20753-20761 |
NN |
denotes |
splicing |
T5740 |
20762-20764 |
IN |
denotes |
of |
T5741 |
20765-20770 |
PRP$ |
denotes |
their |
T5742 |
20787-20792 |
NNS |
denotes |
exons |
T5743 |
20771-20772 |
CD |
denotes |
5 |
T5744 |
20772-20773 |
SYM |
denotes |
' |
T5745 |
20774-20786 |
JJ |
denotes |
untranslated |
T5746 |
20792-20793 |
. |
denotes |
. |
T5747 |
20793-21226 |
sentence |
denotes |
Using a custom script to process sim4 alignments of cDNA and genomic sequences, we find two to eight different splice forms for 85 (45%) of the 191 genes for which we have had some opportunity to observe alternate splicing (that is, a minimum of two cDNAs, at least one of which is spliced), and 55 (67%) of the 82 genes for which we have four or more cDNAs (and thus a higher chance of observing any alternate splicing) (Figure 5). |
T5748 |
20794-20799 |
VBG |
denotes |
Using |
T5749 |
20877-20881 |
VBP |
denotes |
find |
T5750 |
20800-20801 |
DT |
denotes |
a |
T5751 |
20809-20815 |
NN |
denotes |
script |
T5752 |
20802-20808 |
NN |
denotes |
custom |
T5753 |
20816-20818 |
TO |
denotes |
to |
T5754 |
20819-20826 |
VB |
denotes |
process |
T5755 |
20827-20831 |
NN |
denotes |
sim4 |
T5756 |
20832-20842 |
NNS |
denotes |
alignments |
T5757 |
20843-20845 |
IN |
denotes |
of |
T5758 |
20846-20850 |
NN |
denotes |
cDNA |
T5759 |
20863-20872 |
NNS |
denotes |
sequences |
T5760 |
20851-20854 |
CC |
denotes |
and |
T5761 |
20855-20862 |
JJ |
denotes |
genomic |
T5762 |
20872-20874 |
, |
denotes |
, |
T5763 |
20874-20876 |
PRP |
denotes |
we |
T5764 |
20882-20885 |
CD |
denotes |
two |
T5765 |
20889-20894 |
CD |
denotes |
eight |
T5766 |
20886-20888 |
IN |
denotes |
to |
T5767 |
20912-20917 |
NNS |
denotes |
forms |
T5768 |
20895-20904 |
JJ |
denotes |
different |
T5769 |
20905-20911 |
NN |
denotes |
splice |
T5770 |
20918-20921 |
IN |
denotes |
for |
T5771 |
20922-20924 |
CD |
denotes |
85 |
T5772 |
20925-20926 |
-LRB- |
denotes |
( |
T5773 |
20926-20928 |
CD |
denotes |
45 |
T5774 |
20928-20929 |
NN |
denotes |
% |
T5775 |
20929-20930 |
-RRB- |
denotes |
) |
T5776 |
20931-20933 |
IN |
denotes |
of |
T5777 |
20934-20937 |
DT |
denotes |
the |
T5778 |
20942-20947 |
NNS |
denotes |
genes |
T5779 |
20938-20941 |
CD |
denotes |
191 |
T5780 |
20948-20951 |
IN |
denotes |
for |
T5781 |
20966-20969 |
VBN |
denotes |
had |
T5782 |
20952-20957 |
WDT |
denotes |
which |
T5783 |
20958-20960 |
PRP |
denotes |
we |
T5784 |
20961-20965 |
VBP |
denotes |
have |
T5785 |
20970-20974 |
DT |
denotes |
some |
T5786 |
20975-20986 |
NN |
denotes |
opportunity |
T5787 |
20987-20989 |
TO |
denotes |
to |
T5788 |
20990-20997 |
VB |
denotes |
observe |
T5789 |
20998-21007 |
JJ |
denotes |
alternate |
T5790 |
21008-21016 |
NN |
denotes |
splicing |
T5791 |
21017-21018 |
-LRB- |
denotes |
( |
T5792 |
21029-21036 |
NN |
denotes |
minimum |
T5793 |
21018-21022 |
RB |
denotes |
that |
T5794 |
21023-21025 |
RB |
denotes |
is |
T5795 |
21025-21027 |
, |
denotes |
, |
T5796 |
21027-21028 |
DT |
denotes |
a |
T5797 |
21037-21039 |
IN |
denotes |
of |
T5798 |
21040-21043 |
CD |
denotes |
two |
T5799 |
21044-21049 |
NNS |
denotes |
cDNAs |
T5800 |
21049-21051 |
, |
denotes |
, |
T5801 |
21051-21053 |
RB |
denotes |
at |
T5802 |
21054-21059 |
RBS |
denotes |
least |
T5803 |
21060-21063 |
CD |
denotes |
one |
T5804 |
21076-21083 |
VBN |
denotes |
spliced |
T5805 |
21064-21066 |
IN |
denotes |
of |
T5806 |
21067-21072 |
WDT |
denotes |
which |
T5807 |
21073-21075 |
VBZ |
denotes |
is |
T5808 |
21083-21084 |
-RRB- |
denotes |
) |
T5809 |
21084-21086 |
, |
denotes |
, |
T5810 |
21086-21089 |
CC |
denotes |
and |
T5811 |
21090-21092 |
CD |
denotes |
55 |
T5812 |
21093-21094 |
-LRB- |
denotes |
( |
T5813 |
21096-21097 |
NN |
denotes |
% |
T5814 |
21094-21096 |
CD |
denotes |
67 |
T5815 |
21097-21098 |
-RRB- |
denotes |
) |
T5816 |
21099-21101 |
IN |
denotes |
of |
T5817 |
21102-21105 |
DT |
denotes |
the |
T5818 |
21109-21114 |
NNS |
denotes |
genes |
T5819 |
21106-21108 |
CD |
denotes |
82 |
T5820 |
21115-21118 |
IN |
denotes |
for |
T5821 |
21128-21132 |
VBP |
denotes |
have |
T5822 |
21119-21124 |
WDT |
denotes |
which |
T5823 |
21125-21127 |
PRP |
denotes |
we |
T5824 |
21133-21137 |
CD |
denotes |
four |
T5825 |
21146-21151 |
NNS |
denotes |
cDNAs |
T5826 |
21138-21140 |
CC |
denotes |
or |
T5827 |
21141-21145 |
JJR |
denotes |
more |
T5828 |
21152-21153 |
-LRB- |
denotes |
( |
T5829 |
21153-21156 |
CC |
denotes |
and |
T5830 |
21157-21161 |
RB |
denotes |
thus |
T5831 |
21171-21177 |
NN |
denotes |
chance |
T5832 |
21162-21163 |
DT |
denotes |
a |
T5833 |
21164-21170 |
JJR |
denotes |
higher |
T5834 |
21178-21180 |
IN |
denotes |
of |
T5835 |
21181-21190 |
VBG |
denotes |
observing |
T5836 |
21191-21194 |
DT |
denotes |
any |
T5837 |
21205-21213 |
NN |
denotes |
splicing |
T5838 |
21195-21204 |
JJ |
denotes |
alternate |
T5839 |
21213-21214 |
-RRB- |
denotes |
) |
T5840 |
21215-21216 |
-LRB- |
denotes |
( |
T5841 |
21216-21222 |
NN |
denotes |
Figure |
T5842 |
21223-21224 |
CD |
denotes |
5 |
T5843 |
21224-21225 |
-RRB- |
denotes |
) |
T5844 |
21225-21226 |
. |
denotes |
. |
T5845 |
21226-21370 |
sentence |
denotes |
These alternative splice events are almost all restricted to the 5' UTR and include exon skipping and alternate splice-donor and -acceptor use. |
T5846 |
21227-21232 |
DT |
denotes |
These |
T5847 |
21252-21258 |
NNS |
denotes |
events |
T5848 |
21233-21244 |
JJ |
denotes |
alternative |
T5849 |
21245-21251 |
NN |
denotes |
splice |
T5850 |
21274-21284 |
VBN |
denotes |
restricted |
T5851 |
21259-21262 |
VBP |
denotes |
are |
T5852 |
21263-21269 |
RB |
denotes |
almost |
T5853 |
21270-21273 |
RB |
denotes |
all |
T5854 |
21285-21287 |
IN |
denotes |
to |
T5855 |
21288-21291 |
DT |
denotes |
the |
T5856 |
21295-21298 |
NN |
denotes |
UTR |
T5857 |
21292-21293 |
CD |
denotes |
5 |
T5858 |
21293-21294 |
SYM |
denotes |
' |
T5859 |
21299-21302 |
CC |
denotes |
and |
T5860 |
21303-21310 |
VBP |
denotes |
include |
T5861 |
21311-21315 |
NN |
denotes |
exon |
T5862 |
21316-21324 |
NN |
denotes |
skipping |
T5863 |
21325-21328 |
CC |
denotes |
and |
T5864 |
21329-21338 |
JJ |
denotes |
alternate |
T5865 |
21339-21345 |
NN |
denotes |
splice |
T5866 |
21366-21369 |
NN |
denotes |
use |
T5867 |
21345-21346 |
HYPH |
denotes |
- |
T5868 |
21346-21351 |
NN |
denotes |
donor |
T5869 |
21352-21355 |
CC |
denotes |
and |
T5870 |
21356-21357 |
HYPH |
denotes |
- |
T5871 |
21357-21365 |
NN |
denotes |
acceptor |
T5872 |
21369-21370 |
. |
denotes |
. |
T5873 |
21370-21532 |
sentence |
denotes |
At least half of the olfactory receptors represented in our cDNA collection utilize more than one polyadenylation site, resulting in alternative 3' UTR isoforms. |
T5874 |
21371-21373 |
RB |
denotes |
At |
T5875 |
21374-21379 |
RBS |
denotes |
least |
T5876 |
21380-21384 |
NN |
denotes |
half |
T5877 |
21447-21454 |
VBP |
denotes |
utilize |
T5878 |
21385-21387 |
IN |
denotes |
of |
T5879 |
21388-21391 |
DT |
denotes |
the |
T5880 |
21402-21411 |
NNS |
denotes |
receptors |
T5881 |
21392-21401 |
JJ |
denotes |
olfactory |
T5882 |
21412-21423 |
VBN |
denotes |
represented |
T5883 |
21424-21426 |
IN |
denotes |
in |
T5884 |
21427-21430 |
PRP$ |
denotes |
our |
T5885 |
21436-21446 |
NN |
denotes |
collection |
T5886 |
21431-21435 |
NN |
denotes |
cDNA |
T5887 |
21455-21459 |
JJR |
denotes |
more |
T5888 |
21465-21468 |
CD |
denotes |
one |
T5889 |
21460-21464 |
IN |
denotes |
than |
T5890 |
21485-21489 |
NN |
denotes |
site |
T5891 |
21469-21484 |
NN |
denotes |
polyadenylation |
T5892 |
21489-21491 |
, |
denotes |
, |
T5893 |
21491-21500 |
VBG |
denotes |
resulting |
T5894 |
21501-21503 |
IN |
denotes |
in |
T5895 |
21504-21515 |
JJ |
denotes |
alternative |
T5896 |
21523-21531 |
NNS |
denotes |
isoforms |
T5897 |
21516-21517 |
CD |
denotes |
3 |
T5898 |
21519-21522 |
NN |
denotes |
UTR |
T5899 |
21517-21518 |
SYM |
denotes |
' |
T5900 |
21531-21532 |
. |
denotes |
. |
T5901 |
21532-21664 |
sentence |
denotes |
We have crudely estimated 3' UTR size for 1,169 cDNA clones by combining approximate insert size information with 5' sequence data. |
T5902 |
21533-21535 |
PRP |
denotes |
We |
T5903 |
21549-21558 |
VBN |
denotes |
estimated |
T5904 |
21536-21540 |
VBP |
denotes |
have |
T5905 |
21541-21548 |
RB |
denotes |
crudely |
T5906 |
21559-21560 |
CD |
denotes |
3 |
T5907 |
21562-21565 |
NN |
denotes |
UTR |
T5908 |
21560-21561 |
SYM |
denotes |
' |
T5909 |
21566-21570 |
NN |
denotes |
size |
T5910 |
21571-21574 |
IN |
denotes |
for |
T5911 |
21575-21580 |
CD |
denotes |
1,169 |
T5912 |
21586-21592 |
NNS |
denotes |
clones |
T5913 |
21581-21585 |
NN |
denotes |
cDNA |
T5914 |
21593-21595 |
IN |
denotes |
by |
T5915 |
21596-21605 |
VBG |
denotes |
combining |
T5916 |
21606-21617 |
JJ |
denotes |
approximate |
T5917 |
21625-21629 |
NN |
denotes |
size |
T5918 |
21618-21624 |
NN |
denotes |
insert |
T5919 |
21630-21641 |
NN |
denotes |
information |
T5920 |
21642-21646 |
IN |
denotes |
with |
T5921 |
21647-21648 |
CD |
denotes |
5 |
T5922 |
21650-21658 |
NN |
denotes |
sequence |
T5923 |
21648-21649 |
SYM |
denotes |
' |
T5924 |
21659-21663 |
NNS |
denotes |
data |
T5925 |
21663-21664 |
. |
denotes |
. |
T5926 |
21664-21805 |
sentence |
denotes |
More than one 3' UTR isoform is predicted for 43 of the 77 (56%) genes for which there are at least four cDNAs with 3' UTR size information. |
T5927 |
21665-21669 |
JJR |
denotes |
More |
T5928 |
21675-21678 |
CD |
denotes |
one |
T5929 |
21670-21674 |
IN |
denotes |
than |
T5930 |
21686-21693 |
NN |
denotes |
isoform |
T5931 |
21679-21680 |
CD |
denotes |
3 |
T5932 |
21682-21685 |
NN |
denotes |
UTR |
T5933 |
21680-21681 |
SYM |
denotes |
' |
T5934 |
21697-21706 |
VBN |
denotes |
predicted |
T5935 |
21694-21696 |
VBZ |
denotes |
is |
T5936 |
21707-21710 |
IN |
denotes |
for |
T5937 |
21711-21713 |
CD |
denotes |
43 |
T5938 |
21721-21723 |
CD |
denotes |
77 |
T5939 |
21714-21716 |
IN |
denotes |
of |
T5940 |
21717-21720 |
DT |
denotes |
the |
T5941 |
21730-21735 |
NNS |
denotes |
genes |
T5942 |
21724-21725 |
-LRB- |
denotes |
( |
T5943 |
21727-21728 |
NN |
denotes |
% |
T5944 |
21725-21727 |
CD |
denotes |
56 |
T5945 |
21728-21729 |
-RRB- |
denotes |
) |
T5946 |
21736-21739 |
IN |
denotes |
for |
T5947 |
21752-21755 |
VBP |
denotes |
are |
T5948 |
21740-21745 |
WDT |
denotes |
which |
T5949 |
21746-21751 |
EX |
denotes |
there |
T5950 |
21756-21758 |
RB |
denotes |
at |
T5951 |
21765-21769 |
CD |
denotes |
four |
T5952 |
21759-21764 |
RBS |
denotes |
least |
T5953 |
21770-21775 |
NNS |
denotes |
cDNAs |
T5954 |
21776-21780 |
IN |
denotes |
with |
T5955 |
21781-21782 |
CD |
denotes |
3 |
T5956 |
21784-21787 |
NN |
denotes |
UTR |
T5957 |
21782-21783 |
SYM |
denotes |
' |
T5958 |
21788-21792 |
NN |
denotes |
size |
T5959 |
21793-21804 |
NN |
denotes |
information |
T5960 |
21804-21805 |
. |
denotes |
. |
T5961 |
21805-21938 |
sentence |
denotes |
We confirmed the alternative polyadenylation isoforms of four out of five selected genes by sequencing the 3' end of 14 cDNA clones. |
T5962 |
21806-21808 |
PRP |
denotes |
We |
T5963 |
21809-21818 |
VBD |
denotes |
confirmed |
T5964 |
21819-21822 |
DT |
denotes |
the |
T5965 |
21851-21859 |
NNS |
denotes |
isoforms |
T5966 |
21823-21834 |
JJ |
denotes |
alternative |
T5967 |
21835-21850 |
NN |
denotes |
polyadenylation |
T5968 |
21860-21862 |
IN |
denotes |
of |
T5969 |
21863-21867 |
CD |
denotes |
four |
T5970 |
21875-21879 |
CD |
denotes |
five |
T5971 |
21868-21871 |
IN |
denotes |
out |
T5972 |
21872-21874 |
IN |
denotes |
of |
T5973 |
21889-21894 |
NNS |
denotes |
genes |
T5974 |
21880-21888 |
VBN |
denotes |
selected |
T5975 |
21895-21897 |
IN |
denotes |
by |
T5976 |
21898-21908 |
VBG |
denotes |
sequencing |
T5977 |
21909-21912 |
DT |
denotes |
the |
T5978 |
21916-21919 |
NN |
denotes |
end |
T5979 |
21913-21914 |
CD |
denotes |
3 |
T5980 |
21914-21915 |
SYM |
denotes |
' |
T5981 |
21920-21922 |
IN |
denotes |
of |
T5982 |
21923-21925 |
CD |
denotes |
14 |
T5983 |
21931-21937 |
NNS |
denotes |
clones |
T5984 |
21926-21930 |
NN |
denotes |
cDNA |
T5985 |
21937-21938 |
. |
denotes |
. |
T5986 |
21938-22179 |
sentence |
denotes |
These 14 sequences also revealed one cDNA where the poly(A) tail was added 27 bp before the stop codon, and another where an intron was spliced out of the 3' UTR, contrary to the conventional stereotype of olfactory receptor gene structure. |
T5987 |
21939-21944 |
DT |
denotes |
These |
T5988 |
21948-21957 |
NNS |
denotes |
sequences |
T5989 |
21945-21947 |
CD |
denotes |
14 |
T5990 |
21963-21971 |
VBD |
denotes |
revealed |
T5991 |
21958-21962 |
RB |
denotes |
also |
T5992 |
21972-21975 |
CD |
denotes |
one |
T5993 |
21976-21980 |
NN |
denotes |
cDNA |
T5994 |
21981-21986 |
WRB |
denotes |
where |
T5995 |
22008-22013 |
VBN |
denotes |
added |
T5996 |
21987-21990 |
DT |
denotes |
the |
T5997 |
21999-22003 |
NN |
denotes |
tail |
T5998 |
21991-21995 |
NN |
denotes |
poly |
T5999 |
21995-21996 |
-LRB- |
denotes |
( |
T6000 |
21996-21997 |
NN |
denotes |
A |
T6001 |
21997-21998 |
-RRB- |
denotes |
) |
T6002 |
22004-22007 |
VBD |
denotes |
was |
T6003 |
22014-22016 |
CD |
denotes |
27 |
T6004 |
22017-22019 |
NN |
denotes |
bp |
T6005 |
22020-22026 |
IN |
denotes |
before |
T6006 |
22027-22030 |
DT |
denotes |
the |
T6007 |
22036-22041 |
NN |
denotes |
codon |
T6008 |
22031-22035 |
NN |
denotes |
stop |
T6009 |
22041-22043 |
, |
denotes |
, |
T6010 |
22043-22046 |
CC |
denotes |
and |
T6011 |
22047-22054 |
DT |
denotes |
another |
T6012 |
22055-22060 |
WRB |
denotes |
where |
T6013 |
22075-22082 |
VBN |
denotes |
spliced |
T6014 |
22061-22063 |
DT |
denotes |
an |
T6015 |
22064-22070 |
NN |
denotes |
intron |
T6016 |
22071-22074 |
VBD |
denotes |
was |
T6017 |
22083-22086 |
IN |
denotes |
out |
T6018 |
22087-22089 |
IN |
denotes |
of |
T6019 |
22090-22093 |
DT |
denotes |
the |
T6020 |
22097-22100 |
NN |
denotes |
UTR |
T6021 |
22094-22095 |
CD |
denotes |
3 |
T6022 |
22095-22096 |
SYM |
denotes |
' |
T6023 |
22100-22102 |
, |
denotes |
, |
T6024 |
22102-22110 |
JJ |
denotes |
contrary |
T6025 |
22111-22113 |
IN |
denotes |
to |
T6026 |
22114-22117 |
DT |
denotes |
the |
T6027 |
22131-22141 |
NN |
denotes |
stereotype |
T6028 |
22118-22130 |
JJ |
denotes |
conventional |
T6029 |
22142-22144 |
IN |
denotes |
of |
T6030 |
22145-22154 |
JJ |
denotes |
olfactory |
T6031 |
22155-22163 |
NN |
denotes |
receptor |
T6032 |
22164-22168 |
NN |
denotes |
gene |
T6033 |
22169-22178 |
NN |
denotes |
structure |
T6034 |
22178-22179 |
. |
denotes |
. |
T6417 |
22181-22182 |
DT |
denotes |
A |
T6418 |
22183-22189 |
NN |
denotes |
subset |
T6419 |
22213-22218 |
VBZ |
denotes |
shows |
T6420 |
22190-22192 |
IN |
denotes |
of |
T6421 |
22193-22202 |
JJ |
denotes |
olfactory |
T6422 |
22203-22212 |
NNS |
denotes |
receptors |
T6423 |
22219-22226 |
JJ |
denotes |
unusual |
T6424 |
22227-22235 |
NN |
denotes |
splicing |
T6425 |
22235-22431 |
sentence |
denotes |
We identified 62 cDNAs (5% of all olfactory receptor clones) from 38 intact olfactory receptors and one olfactory receptor pseudogene where a splice site within the protein-coding region is used. |
T6426 |
22236-22238 |
PRP |
denotes |
We |
T6427 |
22239-22249 |
VBD |
denotes |
identified |
T6428 |
22250-22252 |
CD |
denotes |
62 |
T6429 |
22253-22258 |
NNS |
denotes |
cDNAs |
T6430 |
22259-22260 |
-LRB- |
denotes |
( |
T6431 |
22261-22262 |
NN |
denotes |
% |
T6432 |
22260-22261 |
CD |
denotes |
5 |
T6433 |
22263-22265 |
IN |
denotes |
of |
T6434 |
22266-22269 |
DT |
denotes |
all |
T6435 |
22289-22295 |
NNS |
denotes |
clones |
T6436 |
22270-22279 |
JJ |
denotes |
olfactory |
T6437 |
22280-22288 |
NN |
denotes |
receptor |
T6438 |
22295-22296 |
-RRB- |
denotes |
) |
T6439 |
22297-22301 |
IN |
denotes |
from |
T6440 |
22302-22304 |
CD |
denotes |
38 |
T6441 |
22322-22331 |
NNS |
denotes |
receptors |
T6442 |
22305-22311 |
JJ |
denotes |
intact |
T6443 |
22312-22321 |
JJ |
denotes |
olfactory |
T6444 |
22332-22335 |
CC |
denotes |
and |
T6445 |
22336-22339 |
CD |
denotes |
one |
T6446 |
22359-22369 |
NN |
denotes |
pseudogene |
T6447 |
22340-22349 |
JJ |
denotes |
olfactory |
T6448 |
22350-22358 |
NN |
denotes |
receptor |
T6449 |
22370-22375 |
WRB |
denotes |
where |
T6450 |
22426-22430 |
VBN |
denotes |
used |
T6451 |
22376-22377 |
DT |
denotes |
a |
T6452 |
22385-22389 |
NN |
denotes |
site |
T6453 |
22378-22384 |
NN |
denotes |
splice |
T6454 |
22390-22396 |
IN |
denotes |
within |
T6455 |
22397-22400 |
DT |
denotes |
the |
T6456 |
22416-22422 |
NN |
denotes |
region |
T6457 |
22401-22408 |
NN |
denotes |
protein |
T6458 |
22409-22415 |
VBG |
denotes |
coding |
T6459 |
22408-22409 |
HYPH |
denotes |
- |
T6460 |
22423-22425 |
VBZ |
denotes |
is |
T6461 |
22430-22431 |
. |
denotes |
. |
T6462 |
22431-22638 |
sentence |
denotes |
For two genes (top two cDNAs, Figure 6), the predicted protein appears to be an intact olfactory receptor with three or ten amino acids, including the initiating methionine, contributed by an upstream exon. |
T6463 |
22432-22435 |
IN |
denotes |
For |
T6464 |
22495-22502 |
VBZ |
denotes |
appears |
T6465 |
22436-22439 |
CD |
denotes |
two |
T6466 |
22440-22445 |
NNS |
denotes |
genes |
T6467 |
22446-22447 |
-LRB- |
denotes |
( |
T6468 |
22462-22468 |
NN |
denotes |
Figure |
T6469 |
22447-22450 |
JJ |
denotes |
top |
T6470 |
22455-22460 |
NNS |
denotes |
cDNAs |
T6471 |
22451-22454 |
CD |
denotes |
two |
T6472 |
22460-22462 |
, |
denotes |
, |
T6473 |
22469-22470 |
CD |
denotes |
6 |
T6474 |
22470-22471 |
-RRB- |
denotes |
) |
T6475 |
22471-22473 |
, |
denotes |
, |
T6476 |
22473-22476 |
DT |
denotes |
the |
T6477 |
22487-22494 |
NN |
denotes |
protein |
T6478 |
22477-22486 |
VBN |
denotes |
predicted |
T6479 |
22503-22505 |
TO |
denotes |
to |
T6480 |
22506-22508 |
VB |
denotes |
be |
T6481 |
22509-22511 |
DT |
denotes |
an |
T6482 |
22529-22537 |
NN |
denotes |
receptor |
T6483 |
22512-22518 |
JJ |
denotes |
intact |
T6484 |
22519-22528 |
JJ |
denotes |
olfactory |
T6485 |
22538-22542 |
IN |
denotes |
with |
T6486 |
22543-22548 |
CD |
denotes |
three |
T6487 |
22562-22567 |
NNS |
denotes |
acids |
T6488 |
22549-22551 |
CC |
denotes |
or |
T6489 |
22552-22555 |
CD |
denotes |
ten |
T6490 |
22556-22561 |
NN |
denotes |
amino |
T6491 |
22567-22569 |
, |
denotes |
, |
T6492 |
22569-22578 |
VBG |
denotes |
including |
T6493 |
22579-22582 |
DT |
denotes |
the |
T6494 |
22594-22604 |
NN |
denotes |
methionine |
T6495 |
22583-22593 |
VBG |
denotes |
initiating |
T6496 |
22604-22606 |
, |
denotes |
, |
T6497 |
22606-22617 |
VBN |
denotes |
contributed |
T6498 |
22618-22620 |
IN |
denotes |
by |
T6499 |
22621-22623 |
DT |
denotes |
an |
T6500 |
22633-22637 |
NN |
denotes |
exon |
T6501 |
22624-22632 |
JJ |
denotes |
upstream |
T6502 |
22637-22638 |
. |
denotes |
. |
T6503 |
22638-22725 |
sentence |
denotes |
A similar gene structure was described previously for a human olfactory receptor [25]. |
T6504 |
22639-22640 |
DT |
denotes |
A |
T6505 |
22654-22663 |
NN |
denotes |
structure |
T6506 |
22641-22648 |
JJ |
denotes |
similar |
T6507 |
22649-22653 |
NN |
denotes |
gene |
T6508 |
22668-22677 |
VBN |
denotes |
described |
T6509 |
22664-22667 |
VBD |
denotes |
was |
T6510 |
22678-22688 |
RB |
denotes |
previously |
T6511 |
22689-22692 |
IN |
denotes |
for |
T6512 |
22693-22694 |
DT |
denotes |
a |
T6513 |
22711-22719 |
NN |
denotes |
receptor |
T6514 |
22695-22700 |
JJ |
denotes |
human |
T6515 |
22701-22710 |
JJ |
denotes |
olfactory |
T6516 |
22720-22721 |
-LRB- |
denotes |
[ |
T6517 |
22721-22723 |
CD |
denotes |
25 |
T6518 |
22723-22724 |
-RRB- |
denotes |
] |
T6519 |
22724-22725 |
. |
denotes |
. |
T6520 |
22725-22815 |
sentence |
denotes |
One of these two mouse genes has no start codon in its otherwise intact main coding exon. |
T6521 |
22726-22729 |
CD |
denotes |
One |
T6522 |
22755-22758 |
VBZ |
denotes |
has |
T6523 |
22730-22732 |
IN |
denotes |
of |
T6524 |
22733-22738 |
DT |
denotes |
these |
T6525 |
22749-22754 |
NNS |
denotes |
genes |
T6526 |
22739-22742 |
CD |
denotes |
two |
T6527 |
22743-22748 |
NN |
denotes |
mouse |
T6528 |
22759-22761 |
DT |
denotes |
no |
T6529 |
22768-22773 |
NN |
denotes |
codon |
T6530 |
22762-22767 |
NN |
denotes |
start |
T6531 |
22774-22776 |
IN |
denotes |
in |
T6532 |
22777-22780 |
PRP$ |
denotes |
its |
T6533 |
22810-22814 |
NN |
denotes |
exon |
T6534 |
22781-22790 |
RB |
denotes |
otherwise |
T6535 |
22791-22797 |
JJ |
denotes |
intact |
T6536 |
22798-22802 |
JJ |
denotes |
main |
T6537 |
22803-22809 |
VBG |
denotes |
coding |
T6538 |
22814-22815 |
. |
denotes |
. |
T6539 |
22815-22895 |
sentence |
denotes |
The unusual splicing thus rescues what would otherwise be a dysfunctional gene. |
T6540 |
22816-22819 |
DT |
denotes |
The |
T6541 |
22828-22836 |
NN |
denotes |
splicing |
T6542 |
22820-22827 |
JJ |
denotes |
unusual |
T6543 |
22842-22849 |
VBZ |
denotes |
rescues |
T6544 |
22837-22841 |
RB |
denotes |
thus |
T6545 |
22850-22854 |
WP |
denotes |
what |
T6546 |
22871-22873 |
VB |
denotes |
be |
T6547 |
22855-22860 |
MD |
denotes |
would |
T6548 |
22861-22870 |
RB |
denotes |
otherwise |
T6549 |
22874-22875 |
DT |
denotes |
a |
T6550 |
22890-22894 |
NN |
denotes |
gene |
T6551 |
22876-22889 |
JJ |
denotes |
dysfunctional |
T6552 |
22894-22895 |
. |
denotes |
. |
T6553 |
22895-23152 |
sentence |
denotes |
In most cases (60 out of 62 cDNAs), the unusual transcript appears to be an aberrant splice form - the transcript would probably not encode a functional protein because the splice introduces a frameshift or removes conserved functional residues (Figure 6). |
T6554 |
22896-22898 |
IN |
denotes |
In |
T6555 |
23029-23035 |
VB |
denotes |
encode |
T6556 |
22899-22903 |
JJS |
denotes |
most |
T6557 |
22904-22909 |
NNS |
denotes |
cases |
T6558 |
22910-22911 |
-LRB- |
denotes |
( |
T6559 |
22911-22913 |
CD |
denotes |
60 |
T6560 |
22921-22923 |
CD |
denotes |
62 |
T6561 |
22914-22917 |
IN |
denotes |
out |
T6562 |
22918-22920 |
IN |
denotes |
of |
T6563 |
22924-22929 |
NNS |
denotes |
cDNAs |
T6564 |
22929-22930 |
-RRB- |
denotes |
) |
T6565 |
22930-22932 |
, |
denotes |
, |
T6566 |
22932-22935 |
DT |
denotes |
the |
T6567 |
22944-22954 |
NN |
denotes |
transcript |
T6568 |
22936-22943 |
JJ |
denotes |
unusual |
T6569 |
22955-22962 |
VBZ |
denotes |
appears |
T6570 |
22963-22965 |
TO |
denotes |
to |
T6571 |
22966-22968 |
VB |
denotes |
be |
T6572 |
22969-22971 |
DT |
denotes |
an |
T6573 |
22988-22992 |
NN |
denotes |
form |
T6574 |
22972-22980 |
JJ |
denotes |
aberrant |
T6575 |
22981-22987 |
NN |
denotes |
splice |
T6576 |
22993-22994 |
: |
denotes |
- |
T6577 |
22995-22998 |
DT |
denotes |
the |
T6578 |
22999-23009 |
NN |
denotes |
transcript |
T6579 |
23010-23015 |
MD |
denotes |
would |
T6580 |
23016-23024 |
RB |
denotes |
probably |
T6581 |
23025-23028 |
RB |
denotes |
not |
T6582 |
23036-23037 |
DT |
denotes |
a |
T6583 |
23049-23056 |
NN |
denotes |
protein |
T6584 |
23038-23048 |
JJ |
denotes |
functional |
T6585 |
23057-23064 |
IN |
denotes |
because |
T6586 |
23076-23086 |
VBZ |
denotes |
introduces |
T6587 |
23065-23068 |
DT |
denotes |
the |
T6588 |
23069-23075 |
NN |
denotes |
splice |
T6589 |
23087-23088 |
DT |
denotes |
a |
T6590 |
23089-23099 |
NN |
denotes |
frameshift |
T6591 |
23100-23102 |
CC |
denotes |
or |
T6592 |
23103-23110 |
VBZ |
denotes |
removes |
T6593 |
23111-23120 |
VBN |
denotes |
conserved |
T6594 |
23132-23140 |
NNS |
denotes |
residues |
T6595 |
23121-23131 |
JJ |
denotes |
functional |
T6596 |
23141-23142 |
-LRB- |
denotes |
( |
T6597 |
23142-23148 |
NN |
denotes |
Figure |
T6598 |
23149-23150 |
CD |
denotes |
6 |
T6599 |
23150-23151 |
-RRB- |
denotes |
) |
T6600 |
23151-23152 |
. |
denotes |
. |
T6601 |
23152-23283 |
sentence |
denotes |
For two clones (bottom two cDNAs, Figure 6), exon order in the cDNA clone is inconsistent with the corresponding genomic sequence. |
T6602 |
23153-23156 |
IN |
denotes |
For |
T6603 |
23227-23229 |
VBZ |
denotes |
is |
T6604 |
23157-23160 |
CD |
denotes |
two |
T6605 |
23161-23167 |
NNS |
denotes |
clones |
T6606 |
23168-23169 |
-LRB- |
denotes |
( |
T6607 |
23187-23193 |
NN |
denotes |
Figure |
T6608 |
23169-23175 |
JJ |
denotes |
bottom |
T6609 |
23180-23185 |
NNS |
denotes |
cDNAs |
T6610 |
23176-23179 |
CD |
denotes |
two |
T6611 |
23185-23187 |
, |
denotes |
, |
T6612 |
23194-23195 |
CD |
denotes |
6 |
T6613 |
23195-23196 |
-RRB- |
denotes |
) |
T6614 |
23196-23198 |
, |
denotes |
, |
T6615 |
23198-23202 |
NN |
denotes |
exon |
T6616 |
23203-23208 |
NN |
denotes |
order |
T6617 |
23209-23211 |
IN |
denotes |
in |
T6618 |
23212-23215 |
DT |
denotes |
the |
T6619 |
23221-23226 |
NN |
denotes |
clone |
T6620 |
23216-23220 |
NN |
denotes |
cDNA |
T6621 |
23230-23242 |
JJ |
denotes |
inconsistent |
T6622 |
23243-23247 |
IN |
denotes |
with |
T6623 |
23248-23251 |
DT |
denotes |
the |
T6624 |
23274-23282 |
NN |
denotes |
sequence |
T6625 |
23252-23265 |
JJ |
denotes |
corresponding |
T6626 |
23266-23273 |
JJ |
denotes |
genomic |
T6627 |
23282-23283 |
. |
denotes |
. |
T6628 |
23283-23444 |
sentence |
denotes |
It is difficult to imagine what kind of cloning artefact resulted in these severely scrambled cDNAs: we suggest that they derive from real but rare transcripts. |
T6629 |
23284-23286 |
PRP |
denotes |
It |
T6630 |
23287-23289 |
VBZ |
denotes |
is |
T6631 |
23388-23395 |
VBP |
denotes |
suggest |
T6632 |
23290-23299 |
JJ |
denotes |
difficult |
T6633 |
23300-23302 |
TO |
denotes |
to |
T6634 |
23303-23310 |
VB |
denotes |
imagine |
T6635 |
23311-23315 |
WDT |
denotes |
what |
T6636 |
23316-23320 |
NN |
denotes |
kind |
T6637 |
23341-23349 |
VBD |
denotes |
resulted |
T6638 |
23321-23323 |
IN |
denotes |
of |
T6639 |
23324-23331 |
VBG |
denotes |
cloning |
T6640 |
23332-23340 |
NN |
denotes |
artefact |
T6641 |
23350-23352 |
IN |
denotes |
in |
T6642 |
23353-23358 |
DT |
denotes |
these |
T6643 |
23378-23383 |
NNS |
denotes |
cDNAs |
T6644 |
23359-23367 |
RB |
denotes |
severely |
T6645 |
23368-23377 |
VBN |
denotes |
scrambled |
T6646 |
23383-23385 |
: |
denotes |
: |
T6647 |
23385-23387 |
PRP |
denotes |
we |
T6648 |
23396-23400 |
IN |
denotes |
that |
T6649 |
23406-23412 |
VBP |
denotes |
derive |
T6650 |
23401-23405 |
PRP |
denotes |
they |
T6651 |
23413-23417 |
IN |
denotes |
from |
T6652 |
23418-23422 |
JJ |
denotes |
real |
T6653 |
23432-23443 |
NNS |
denotes |
transcripts |
T6654 |
23423-23426 |
CC |
denotes |
but |
T6655 |
23427-23431 |
JJ |
denotes |
rare |
T6656 |
23443-23444 |
. |
denotes |
. |
T6657 |
23444-23635 |
sentence |
denotes |
However, their low frequency in our cDNA collection suggests that splicing contrary to genomic organization does not contribute significantly to the olfactory receptor transcript repertoire. |
T6658 |
23445-23452 |
RB |
denotes |
However |
T6659 |
23497-23505 |
VBZ |
denotes |
suggests |
T6660 |
23452-23454 |
, |
denotes |
, |
T6661 |
23454-23459 |
PRP$ |
denotes |
their |
T6662 |
23464-23473 |
NN |
denotes |
frequency |
T6663 |
23460-23463 |
JJ |
denotes |
low |
T6664 |
23474-23476 |
IN |
denotes |
in |
T6665 |
23477-23480 |
PRP$ |
denotes |
our |
T6666 |
23486-23496 |
NN |
denotes |
collection |
T6667 |
23481-23485 |
NN |
denotes |
cDNA |
T6668 |
23506-23510 |
IN |
denotes |
that |
T6669 |
23562-23572 |
VB |
denotes |
contribute |
T6670 |
23511-23519 |
NN |
denotes |
splicing |
T6671 |
23520-23528 |
JJ |
denotes |
contrary |
T6672 |
23529-23531 |
IN |
denotes |
to |
T6673 |
23532-23539 |
JJ |
denotes |
genomic |
T6674 |
23540-23552 |
NN |
denotes |
organization |
T6675 |
23553-23557 |
VBZ |
denotes |
does |
T6676 |
23558-23561 |
RB |
denotes |
not |
T6677 |
23573-23586 |
RB |
denotes |
significantly |
T6678 |
23587-23589 |
IN |
denotes |
to |
T6679 |
23590-23593 |
DT |
denotes |
the |
T6680 |
23624-23634 |
NN |
denotes |
repertoire |
T6681 |
23594-23603 |
JJ |
denotes |
olfactory |
T6682 |
23604-23612 |
NN |
denotes |
receptor |
T6683 |
23613-23623 |
NN |
denotes |
transcript |
T6684 |
23634-23635 |
. |
denotes |
. |
T6685 |
23635-23811 |
sentence |
denotes |
For 21 of the 26 genes for which unusually spliced cDNAs were found, we also observe an alternative ('normal') isoform that does not use splice sites within the coding region. |
T6686 |
23636-23639 |
IN |
denotes |
For |
T6687 |
23713-23720 |
VBP |
denotes |
observe |
T6688 |
23640-23642 |
CD |
denotes |
21 |
T6689 |
23650-23652 |
CD |
denotes |
26 |
T6690 |
23643-23645 |
IN |
denotes |
of |
T6691 |
23646-23649 |
DT |
denotes |
the |
T6692 |
23653-23658 |
NNS |
denotes |
genes |
T6693 |
23659-23662 |
IN |
denotes |
for |
T6694 |
23698-23703 |
VBN |
denotes |
found |
T6695 |
23663-23668 |
WDT |
denotes |
which |
T6696 |
23669-23678 |
RB |
denotes |
unusually |
T6697 |
23679-23686 |
VBN |
denotes |
spliced |
T6698 |
23687-23692 |
NNS |
denotes |
cDNAs |
T6699 |
23693-23697 |
VBD |
denotes |
were |
T6700 |
23703-23705 |
, |
denotes |
, |
T6701 |
23705-23707 |
PRP |
denotes |
we |
T6702 |
23708-23712 |
RB |
denotes |
also |
T6703 |
23721-23723 |
DT |
denotes |
an |
T6704 |
23747-23754 |
NN |
denotes |
isoform |
T6705 |
23724-23735 |
JJ |
denotes |
alternative |
T6706 |
23736-23737 |
-LRB- |
denotes |
( |
T6707 |
23737-23738 |
`` |
denotes |
' |
T6708 |
23738-23744 |
JJ |
denotes |
normal |
T6709 |
23744-23745 |
'' |
denotes |
' |
T6710 |
23745-23746 |
-RRB- |
denotes |
) |
T6711 |
23755-23759 |
WDT |
denotes |
that |
T6712 |
23769-23772 |
VB |
denotes |
use |
T6713 |
23760-23764 |
VBZ |
denotes |
does |
T6714 |
23765-23768 |
RB |
denotes |
not |
T6715 |
23773-23779 |
NN |
denotes |
splice |
T6716 |
23780-23785 |
NNS |
denotes |
sites |
T6717 |
23786-23792 |
IN |
denotes |
within |
T6718 |
23793-23796 |
DT |
denotes |
the |
T6719 |
23804-23810 |
NN |
denotes |
region |
T6720 |
23797-23803 |
VBG |
denotes |
coding |
T6721 |
23810-23811 |
. |
denotes |
. |
T6722 |
23811-23965 |
sentence |
denotes |
(For the remaining 13 of the 3' genes showing odd splicing, we have identified only one cDNA so have not determined whether normal isoforms are present.) |
T6723 |
23812-23813 |
-LRB- |
denotes |
( |
T6724 |
23880-23890 |
VBN |
denotes |
identified |
T6725 |
23813-23816 |
IN |
denotes |
For |
T6726 |
23817-23820 |
DT |
denotes |
the |
T6727 |
23831-23833 |
CD |
denotes |
13 |
T6728 |
23821-23830 |
VBG |
denotes |
remaining |
T6729 |
23834-23836 |
IN |
denotes |
of |
T6730 |
23837-23840 |
DT |
denotes |
the |
T6731 |
23844-23849 |
NNS |
denotes |
genes |
T6732 |
23841-23842 |
CD |
denotes |
3 |
T6733 |
23842-23843 |
SYM |
denotes |
' |
T6734 |
23850-23857 |
VBG |
denotes |
showing |
T6735 |
23858-23861 |
JJ |
denotes |
odd |
T6736 |
23862-23870 |
NN |
denotes |
splicing |
T6737 |
23870-23872 |
, |
denotes |
, |
T6738 |
23872-23874 |
PRP |
denotes |
we |
T6739 |
23875-23879 |
VBP |
denotes |
have |
T6740 |
23891-23895 |
RB |
denotes |
only |
T6741 |
23900-23904 |
NN |
denotes |
cDNA |
T6742 |
23896-23899 |
CD |
denotes |
one |
T6743 |
23905-23907 |
CC |
denotes |
so |
T6744 |
23908-23912 |
VBP |
denotes |
have |
T6745 |
23917-23927 |
VBN |
denotes |
determined |
T6746 |
23913-23916 |
RB |
denotes |
not |
T6747 |
23928-23935 |
IN |
denotes |
whether |
T6748 |
23952-23955 |
VBP |
denotes |
are |
T6749 |
23936-23942 |
JJ |
denotes |
normal |
T6750 |
23943-23951 |
NNS |
denotes |
isoforms |
T6751 |
23956-23963 |
JJ |
denotes |
present |
T6752 |
23963-23964 |
. |
denotes |
. |
T6753 |
23964-23965 |
-RRB- |
denotes |
) |
T6754 |
23965-24391 |
sentence |
denotes |
We were intrigued both by previous reports of splicing of human olfactory receptors near the major histocompatibility complex (MHC) cluster, where several genes splice over long distances to a common upstream exon [26,27] and by the idea that olfactory receptor transcriptional control could be achieved by DNA recombination mechanisms, perhaps with the result that transcripts would contain some sequence from another locus. |
T6755 |
23966-23968 |
PRP |
denotes |
We |
T6756 |
23974-23983 |
VBN |
denotes |
intrigued |
T6757 |
23969-23973 |
VBD |
denotes |
were |
T6758 |
23984-23988 |
CC |
denotes |
both |
T6759 |
23989-23991 |
IN |
denotes |
by |
T6760 |
23992-24000 |
JJ |
denotes |
previous |
T6761 |
24001-24008 |
NNS |
denotes |
reports |
T6762 |
24009-24011 |
IN |
denotes |
of |
T6763 |
24012-24020 |
NN |
denotes |
splicing |
T6764 |
24021-24023 |
IN |
denotes |
of |
T6765 |
24024-24029 |
JJ |
denotes |
human |
T6766 |
24040-24049 |
NNS |
denotes |
receptors |
T6767 |
24030-24039 |
JJ |
denotes |
olfactory |
T6768 |
24050-24054 |
IN |
denotes |
near |
T6769 |
24055-24058 |
DT |
denotes |
the |
T6770 |
24084-24091 |
NN |
denotes |
complex |
T6771 |
24059-24064 |
JJ |
denotes |
major |
T6772 |
24065-24083 |
NN |
denotes |
histocompatibility |
T6773 |
24098-24105 |
NN |
denotes |
cluster |
T6774 |
24092-24093 |
-LRB- |
denotes |
( |
T6775 |
24093-24096 |
NN |
denotes |
MHC |
T6776 |
24096-24097 |
-RRB- |
denotes |
) |
T6777 |
24105-24107 |
, |
denotes |
, |
T6778 |
24107-24112 |
WRB |
denotes |
where |
T6779 |
24127-24133 |
VBP |
denotes |
splice |
T6780 |
24113-24120 |
JJ |
denotes |
several |
T6781 |
24121-24126 |
NNS |
denotes |
genes |
T6782 |
24134-24138 |
IN |
denotes |
over |
T6783 |
24139-24143 |
JJ |
denotes |
long |
T6784 |
24144-24153 |
NNS |
denotes |
distances |
T6785 |
24154-24156 |
IN |
denotes |
to |
T6786 |
24157-24158 |
DT |
denotes |
a |
T6787 |
24175-24179 |
NN |
denotes |
exon |
T6788 |
24159-24165 |
JJ |
denotes |
common |
T6789 |
24166-24174 |
JJ |
denotes |
upstream |
T6790 |
24180-24181 |
-LRB- |
denotes |
[ |
T6791 |
24184-24186 |
CD |
denotes |
27 |
T6792 |
24181-24183 |
CD |
denotes |
26 |
T6793 |
24183-24184 |
, |
denotes |
, |
T6794 |
24186-24187 |
-RRB- |
denotes |
] |
T6795 |
24188-24191 |
CC |
denotes |
and |
T6796 |
24192-24194 |
IN |
denotes |
by |
T6797 |
24195-24198 |
DT |
denotes |
the |
T6798 |
24199-24203 |
NN |
denotes |
idea |
T6799 |
24204-24208 |
IN |
denotes |
that |
T6800 |
24261-24269 |
VBN |
denotes |
achieved |
T6801 |
24209-24218 |
JJ |
denotes |
olfactory |
T6802 |
24219-24227 |
NN |
denotes |
receptor |
T6803 |
24244-24251 |
NN |
denotes |
control |
T6804 |
24228-24243 |
JJ |
denotes |
transcriptional |
T6805 |
24252-24257 |
MD |
denotes |
could |
T6806 |
24258-24260 |
VB |
denotes |
be |
T6807 |
24270-24272 |
IN |
denotes |
by |
T6808 |
24273-24276 |
NN |
denotes |
DNA |
T6809 |
24291-24301 |
NNS |
denotes |
mechanisms |
T6810 |
24277-24290 |
NN |
denotes |
recombination |
T6811 |
24301-24303 |
, |
denotes |
, |
T6812 |
24303-24310 |
RB |
denotes |
perhaps |
T6813 |
24311-24315 |
IN |
denotes |
with |
T6814 |
24316-24319 |
DT |
denotes |
the |
T6815 |
24320-24326 |
NN |
denotes |
result |
T6816 |
24327-24331 |
IN |
denotes |
that |
T6817 |
24350-24357 |
VB |
denotes |
contain |
T6818 |
24332-24343 |
NNS |
denotes |
transcripts |
T6819 |
24344-24349 |
MD |
denotes |
would |
T6820 |
24358-24362 |
DT |
denotes |
some |
T6821 |
24363-24371 |
NN |
denotes |
sequence |
T6822 |
24372-24376 |
IN |
denotes |
from |
T6823 |
24377-24384 |
DT |
denotes |
another |
T6824 |
24385-24390 |
NN |
denotes |
locus |
T6825 |
24390-24391 |
. |
denotes |
. |
T6826 |
24391-24624 |
sentence |
denotes |
We therefore verified that the entire sequence of each olfactory receptor EST matches the corresponding gene's genomic 'territory' (defined for this purpose as from 1 kb after the preceding gene to 1 kb after the gene's stop codon). |
T6827 |
24392-24394 |
PRP |
denotes |
We |
T6828 |
24405-24413 |
VBD |
denotes |
verified |
T6829 |
24395-24404 |
RB |
denotes |
therefore |
T6830 |
24414-24418 |
IN |
denotes |
that |
T6831 |
24470-24477 |
VBZ |
denotes |
matches |
T6832 |
24419-24422 |
DT |
denotes |
the |
T6833 |
24430-24438 |
NN |
denotes |
sequence |
T6834 |
24423-24429 |
JJ |
denotes |
entire |
T6835 |
24439-24441 |
IN |
denotes |
of |
T6836 |
24442-24446 |
DT |
denotes |
each |
T6837 |
24466-24469 |
NN |
denotes |
EST |
T6838 |
24447-24456 |
JJ |
denotes |
olfactory |
T6839 |
24457-24465 |
NN |
denotes |
receptor |
T6840 |
24478-24481 |
DT |
denotes |
the |
T6841 |
24496-24500 |
NN |
denotes |
gene |
T6842 |
24482-24495 |
VBG |
denotes |
corresponding |
T6843 |
24512-24521 |
NN |
denotes |
territory |
T6844 |
24500-24502 |
POS |
denotes |
's |
T6845 |
24503-24510 |
JJ |
denotes |
genomic |
T6846 |
24511-24512 |
`` |
denotes |
' |
T6847 |
24521-24522 |
'' |
denotes |
' |
T6848 |
24523-24524 |
-LRB- |
denotes |
( |
T6849 |
24524-24531 |
VBN |
denotes |
defined |
T6850 |
24532-24535 |
IN |
denotes |
for |
T6851 |
24536-24540 |
DT |
denotes |
this |
T6852 |
24541-24548 |
NN |
denotes |
purpose |
T6853 |
24549-24551 |
IN |
denotes |
as |
T6854 |
24552-24556 |
IN |
denotes |
from |
T6855 |
24557-24558 |
CD |
denotes |
1 |
T6856 |
24559-24561 |
NN |
denotes |
kb |
T6857 |
24562-24567 |
IN |
denotes |
after |
T6858 |
24568-24571 |
DT |
denotes |
the |
T6859 |
24582-24586 |
NN |
denotes |
gene |
T6860 |
24572-24581 |
VBG |
denotes |
preceding |
T6861 |
24587-24589 |
IN |
denotes |
to |
T6862 |
24590-24591 |
CD |
denotes |
1 |
T6863 |
24592-24594 |
NN |
denotes |
kb |
T6864 |
24595-24600 |
IN |
denotes |
after |
T6865 |
24601-24604 |
DT |
denotes |
the |
T6866 |
24605-24609 |
NN |
denotes |
gene |
T6867 |
24617-24622 |
NN |
denotes |
codon |
T6868 |
24609-24611 |
POS |
denotes |
's |
T6869 |
24612-24616 |
NN |
denotes |
stop |
T6870 |
24622-24623 |
-RRB- |
denotes |
) |
T6871 |
24623-24624 |
. |
denotes |
. |
T6872 |
24624-24769 |
sentence |
denotes |
We found no cDNAs where introns encompassed other olfactory receptor genes, as reported for olfactory receptors in the human MHC region [26,27]. |
T6873 |
24625-24627 |
PRP |
denotes |
We |
T6874 |
24628-24633 |
VBD |
denotes |
found |
T6875 |
24634-24636 |
DT |
denotes |
no |
T6876 |
24637-24642 |
NNS |
denotes |
cDNAs |
T6877 |
24643-24648 |
WRB |
denotes |
where |
T6878 |
24657-24668 |
VBD |
denotes |
encompassed |
T6879 |
24649-24656 |
NNS |
denotes |
introns |
T6880 |
24669-24674 |
JJ |
denotes |
other |
T6881 |
24694-24699 |
NNS |
denotes |
genes |
T6882 |
24675-24684 |
JJ |
denotes |
olfactory |
T6883 |
24685-24693 |
NN |
denotes |
receptor |
T6884 |
24699-24701 |
, |
denotes |
, |
T6885 |
24701-24703 |
IN |
denotes |
as |
T6886 |
24704-24712 |
VBN |
denotes |
reported |
T6887 |
24713-24716 |
IN |
denotes |
for |
T6888 |
24717-24726 |
JJ |
denotes |
olfactory |
T6889 |
24727-24736 |
NNS |
denotes |
receptors |
T6890 |
24737-24739 |
IN |
denotes |
in |
T6891 |
24740-24743 |
DT |
denotes |
the |
T6892 |
24754-24760 |
NN |
denotes |
region |
T6893 |
24744-24749 |
JJ |
denotes |
human |
T6894 |
24750-24753 |
NN |
denotes |
MHC |
T6895 |
24761-24762 |
-LRB- |
denotes |
[ |
T6896 |
24765-24767 |
CD |
denotes |
27 |
T6897 |
24762-24764 |
CD |
denotes |
26 |
T6898 |
24764-24765 |
, |
denotes |
, |
T6899 |
24767-24768 |
-RRB- |
denotes |
] |
T6900 |
24768-24769 |
. |
denotes |
. |
T6901 |
24769-24900 |
sentence |
denotes |
Six cDNAs do extend further than a single gene's 'territory' and appear not to be artifacts of the sequencing or analysis process. |
T6902 |
24770-24773 |
CD |
denotes |
Six |
T6903 |
24774-24779 |
NNS |
denotes |
cDNAs |
T6904 |
24783-24789 |
VB |
denotes |
extend |
T6905 |
24780-24782 |
VBP |
denotes |
do |
T6906 |
24790-24797 |
RBR |
denotes |
further |
T6907 |
24798-24802 |
IN |
denotes |
than |
T6908 |
24803-24804 |
DT |
denotes |
a |
T6909 |
24812-24816 |
NN |
denotes |
gene |
T6910 |
24805-24811 |
JJ |
denotes |
single |
T6911 |
24820-24829 |
NN |
denotes |
territory |
T6912 |
24816-24818 |
POS |
denotes |
's |
T6913 |
24819-24820 |
`` |
denotes |
' |
T6914 |
24829-24830 |
'' |
denotes |
' |
T6915 |
24831-24834 |
CC |
denotes |
and |
T6916 |
24835-24841 |
VBP |
denotes |
appear |
T6917 |
24842-24845 |
RB |
denotes |
not |
T6918 |
24849-24851 |
VB |
denotes |
be |
T6919 |
24846-24848 |
TO |
denotes |
to |
T6920 |
24852-24861 |
NNS |
denotes |
artifacts |
T6921 |
24862-24864 |
IN |
denotes |
of |
T6922 |
24865-24868 |
DT |
denotes |
the |
T6923 |
24892-24899 |
NN |
denotes |
process |
T6924 |
24869-24879 |
NN |
denotes |
sequencing |
T6925 |
24880-24882 |
CC |
denotes |
or |
T6926 |
24883-24891 |
NN |
denotes |
analysis |
T6927 |
24899-24900 |
. |
denotes |
. |
T6928 |
24900-25048 |
sentence |
denotes |
In each of these cases, the clones use splice sites within the 3' UTR and thus extend further than the arbitrary 1 kb downstream of the stop codon. |
T6929 |
24901-24903 |
IN |
denotes |
In |
T6930 |
24936-24939 |
VBP |
denotes |
use |
T6931 |
24904-24908 |
DT |
denotes |
each |
T6932 |
24909-24911 |
IN |
denotes |
of |
T6933 |
24912-24917 |
DT |
denotes |
these |
T6934 |
24918-24923 |
NNS |
denotes |
cases |
T6935 |
24923-24925 |
, |
denotes |
, |
T6936 |
24925-24928 |
DT |
denotes |
the |
T6937 |
24929-24935 |
NNS |
denotes |
clones |
T6938 |
24940-24946 |
NN |
denotes |
splice |
T6939 |
24947-24952 |
NNS |
denotes |
sites |
T6940 |
24953-24959 |
IN |
denotes |
within |
T6941 |
24960-24963 |
DT |
denotes |
the |
T6942 |
24967-24970 |
NN |
denotes |
UTR |
T6943 |
24964-24965 |
CD |
denotes |
3 |
T6944 |
24965-24966 |
SYM |
denotes |
' |
T6945 |
24971-24974 |
CC |
denotes |
and |
T6946 |
24975-24979 |
RB |
denotes |
thus |
T6947 |
24980-24986 |
VBP |
denotes |
extend |
T6948 |
24987-24994 |
RBR |
denotes |
further |
T6949 |
25019-25029 |
JJ |
denotes |
downstream |
T6950 |
24995-24999 |
IN |
denotes |
than |
T6951 |
25000-25003 |
DT |
denotes |
the |
T6952 |
25016-25018 |
NN |
denotes |
kb |
T6953 |
25004-25013 |
JJ |
denotes |
arbitrary |
T6954 |
25014-25015 |
CD |
denotes |
1 |
T6955 |
25030-25032 |
IN |
denotes |
of |
T6956 |
25033-25036 |
DT |
denotes |
the |
T6957 |
25042-25047 |
NN |
denotes |
codon |
T6958 |
25037-25041 |
NN |
denotes |
stop |
T6959 |
25047-25048 |
. |
denotes |
. |
T6960 |
25048-25178 |
sentence |
denotes |
Five of these six cDNAs also use splice-donor sites within the coding region and encode disrupted olfactory receptors (Figure 6). |
T6961 |
25049-25053 |
CD |
denotes |
Five |
T6962 |
25078-25081 |
VBP |
denotes |
use |
T6963 |
25054-25056 |
IN |
denotes |
of |
T6964 |
25057-25062 |
DT |
denotes |
these |
T6965 |
25067-25072 |
NNS |
denotes |
cDNAs |
T6966 |
25063-25066 |
CD |
denotes |
six |
T6967 |
25073-25077 |
RB |
denotes |
also |
T6968 |
25082-25088 |
NN |
denotes |
splice |
T6969 |
25089-25094 |
NN |
denotes |
donor |
T6970 |
25088-25089 |
HYPH |
denotes |
- |
T6971 |
25095-25100 |
NNS |
denotes |
sites |
T6972 |
25101-25107 |
IN |
denotes |
within |
T6973 |
25108-25111 |
DT |
denotes |
the |
T6974 |
25119-25125 |
NN |
denotes |
region |
T6975 |
25112-25118 |
VBG |
denotes |
coding |
T6976 |
25126-25129 |
CC |
denotes |
and |
T6977 |
25130-25136 |
VBP |
denotes |
encode |
T6978 |
25137-25146 |
VBN |
denotes |
disrupted |
T6979 |
25157-25166 |
NNS |
denotes |
receptors |
T6980 |
25147-25156 |
JJ |
denotes |
olfactory |
T6981 |
25167-25168 |
-LRB- |
denotes |
( |
T6982 |
25168-25174 |
NN |
denotes |
Figure |
T6983 |
25175-25176 |
CD |
denotes |
6 |
T6984 |
25176-25177 |
-RRB- |
denotes |
) |
T6985 |
25177-25178 |
. |
denotes |
. |
T6986 |
25178-25277 |
sentence |
denotes |
In the sixth cDNA, a 2.6-kb intron is spliced out of the 3' UTR, leaving the coding region intact. |
T6987 |
25179-25181 |
IN |
denotes |
In |
T6988 |
25217-25224 |
VBN |
denotes |
spliced |
T6989 |
25182-25185 |
DT |
denotes |
the |
T6990 |
25192-25196 |
NN |
denotes |
cDNA |
T6991 |
25186-25191 |
JJ |
denotes |
sixth |
T6992 |
25196-25198 |
, |
denotes |
, |
T6993 |
25198-25199 |
DT |
denotes |
a |
T6994 |
25207-25213 |
NN |
denotes |
intron |
T6995 |
25200-25203 |
CD |
denotes |
2.6 |
T6996 |
25204-25206 |
NN |
denotes |
kb |
T6997 |
25203-25204 |
HYPH |
denotes |
- |
T6999 |
25225-25228 |
IN |
denotes |
out |
T7000 |
25229-25231 |
IN |
denotes |
of |
T7001 |
25232-25235 |
DT |
denotes |
the |
T7002 |
25239-25242 |
NN |
denotes |
UTR |
T7003 |
25236-25237 |
CD |
denotes |
3 |
T7004 |
25237-25238 |
SYM |
denotes |
' |
T7005 |
25242-25244 |
, |
denotes |
, |
T7006 |
25244-25251 |
VBG |
denotes |
leaving |
T7007 |
25252-25255 |
DT |
denotes |
the |
T7008 |
25263-25269 |
NN |
denotes |
region |
T7009 |
25256-25262 |
VBG |
denotes |
coding |
T7010 |
25270-25276 |
JJ |
denotes |
intact |
T7011 |
25276-25277 |
. |
denotes |
. |
T7012 |
25277-25512 |
sentence |
denotes |
If olfactory receptor transcriptional control is achieved by DNA recombination, the beginning of each transcript might derive from a donated promoter region, with the rest of the transcript coming from the native ORF-containing locus. |
T7013 |
25278-25280 |
IN |
denotes |
If |
T7014 |
25327-25335 |
VBN |
denotes |
achieved |
T7015 |
25281-25290 |
JJ |
denotes |
olfactory |
T7016 |
25291-25299 |
NN |
denotes |
receptor |
T7017 |
25316-25323 |
NN |
denotes |
control |
T7018 |
25300-25315 |
JJ |
denotes |
transcriptional |
T7019 |
25324-25326 |
VBZ |
denotes |
is |
T7020 |
25397-25403 |
VB |
denotes |
derive |
T7021 |
25336-25338 |
IN |
denotes |
by |
T7022 |
25339-25342 |
NN |
denotes |
DNA |
T7023 |
25343-25356 |
NN |
denotes |
recombination |
T7024 |
25356-25358 |
, |
denotes |
, |
T7025 |
25358-25361 |
DT |
denotes |
the |
T7026 |
25362-25371 |
NN |
denotes |
beginning |
T7027 |
25372-25374 |
IN |
denotes |
of |
T7028 |
25375-25379 |
DT |
denotes |
each |
T7029 |
25380-25390 |
NN |
denotes |
transcript |
T7030 |
25391-25396 |
MD |
denotes |
might |
T7031 |
25404-25408 |
IN |
denotes |
from |
T7032 |
25409-25410 |
DT |
denotes |
a |
T7033 |
25428-25434 |
NN |
denotes |
region |
T7034 |
25411-25418 |
VBN |
denotes |
donated |
T7035 |
25419-25427 |
NN |
denotes |
promoter |
T7036 |
25434-25436 |
, |
denotes |
, |
T7037 |
25436-25440 |
IN |
denotes |
with |
T7038 |
25441-25444 |
DT |
denotes |
the |
T7039 |
25445-25449 |
NN |
denotes |
rest |
T7040 |
25468-25474 |
VBG |
denotes |
coming |
T7041 |
25450-25452 |
IN |
denotes |
of |
T7042 |
25453-25456 |
DT |
denotes |
the |
T7043 |
25457-25467 |
NN |
denotes |
transcript |
T7044 |
25475-25479 |
IN |
denotes |
from |
T7045 |
25480-25483 |
DT |
denotes |
the |
T7046 |
25506-25511 |
NN |
denotes |
locus |
T7047 |
25484-25490 |
JJ |
denotes |
native |
T7048 |
25491-25494 |
NN |
denotes |
ORF |
T7049 |
25495-25505 |
VBG |
denotes |
containing |
T7050 |
25494-25495 |
HYPH |
denotes |
- |
T7051 |
25511-25512 |
. |
denotes |
. |
T7052 |
25512-25671 |
sentence |
denotes |
In order to examine the recombination hypothesis, we analyzed 115 cDNA clones for which sim4 failed to align 20 bp or more to the corresponding genomic locus. |
T7053 |
25513-25515 |
IN |
denotes |
In |
T7054 |
25566-25574 |
VBD |
denotes |
analyzed |
T7055 |
25516-25521 |
NN |
denotes |
order |
T7056 |
25522-25524 |
TO |
denotes |
to |
T7057 |
25525-25532 |
VB |
denotes |
examine |
T7058 |
25533-25536 |
DT |
denotes |
the |
T7059 |
25551-25561 |
NN |
denotes |
hypothesis |
T7060 |
25537-25550 |
NN |
denotes |
recombination |
T7061 |
25561-25563 |
, |
denotes |
, |
T7062 |
25563-25565 |
PRP |
denotes |
we |
T7063 |
25575-25578 |
CD |
denotes |
115 |
T7064 |
25584-25590 |
NNS |
denotes |
clones |
T7065 |
25579-25583 |
NN |
denotes |
cDNA |
T7066 |
25591-25594 |
IN |
denotes |
for |
T7067 |
25606-25612 |
VBD |
denotes |
failed |
T7068 |
25595-25600 |
WDT |
denotes |
which |
T7069 |
25601-25605 |
NN |
denotes |
sim4 |
T7070 |
25613-25615 |
TO |
denotes |
to |
T7071 |
25616-25621 |
VB |
denotes |
align |
T7072 |
25622-25624 |
CD |
denotes |
20 |
T7073 |
25625-25627 |
NNS |
denotes |
bp |
T7074 |
25628-25630 |
CC |
denotes |
or |
T7075 |
25631-25635 |
JJR |
denotes |
more |
T7076 |
25636-25638 |
IN |
denotes |
to |
T7077 |
25639-25642 |
DT |
denotes |
the |
T7078 |
25665-25670 |
NN |
denotes |
locus |
T7079 |
25643-25656 |
VBG |
denotes |
corresponding |
T7080 |
25657-25664 |
JJ |
denotes |
genomic |
T7081 |
25670-25671 |
. |
denotes |
. |
T7082 |
25671-25840 |
sentence |
denotes |
In most cases, the missing sequence was explained by gaps in the genomic sequence or by matches that fell below our percent identity-based cutoff for reporting matches. |
T7083 |
25672-25674 |
IN |
denotes |
In |
T7084 |
25712-25721 |
VBN |
denotes |
explained |
T7085 |
25675-25679 |
JJS |
denotes |
most |
T7086 |
25680-25685 |
NNS |
denotes |
cases |
T7087 |
25685-25687 |
, |
denotes |
, |
T7088 |
25687-25690 |
DT |
denotes |
the |
T7089 |
25699-25707 |
NN |
denotes |
sequence |
T7090 |
25691-25698 |
JJ |
denotes |
missing |
T7091 |
25708-25711 |
VBD |
denotes |
was |
T7092 |
25722-25724 |
IN |
denotes |
by |
T7093 |
25725-25729 |
NNS |
denotes |
gaps |
T7094 |
25730-25732 |
IN |
denotes |
in |
T7095 |
25733-25736 |
DT |
denotes |
the |
T7096 |
25745-25753 |
NN |
denotes |
sequence |
T7097 |
25737-25744 |
JJ |
denotes |
genomic |
T7098 |
25754-25756 |
CC |
denotes |
or |
T7099 |
25757-25759 |
IN |
denotes |
by |
T7100 |
25760-25767 |
NNS |
denotes |
matches |
T7101 |
25768-25772 |
WDT |
denotes |
that |
T7102 |
25773-25777 |
VBD |
denotes |
fell |
T7103 |
25778-25783 |
IN |
denotes |
below |
T7104 |
25784-25787 |
PRP$ |
denotes |
our |
T7105 |
25811-25817 |
NN |
denotes |
cutoff |
T7106 |
25788-25795 |
NN |
denotes |
percent |
T7107 |
25796-25804 |
NN |
denotes |
identity |
T7108 |
25805-25810 |
VBN |
denotes |
based |
T7109 |
25804-25805 |
HYPH |
denotes |
- |
T7110 |
25818-25821 |
IN |
denotes |
for |
T7111 |
25822-25831 |
VBG |
denotes |
reporting |
T7112 |
25832-25839 |
NNS |
denotes |
matches |
T7113 |
25839-25840 |
. |
denotes |
. |
T7114 |
25840-25977 |
sentence |
denotes |
For three cDNAs (from three different olfactory receptors), we found that the missing piece of sequence matched elsewhere in the genome. |
T7115 |
25841-25844 |
IN |
denotes |
For |
T7116 |
25904-25909 |
VBD |
denotes |
found |
T7117 |
25845-25850 |
CD |
denotes |
three |
T7118 |
25851-25856 |
NNS |
denotes |
cDNAs |
T7119 |
25857-25858 |
-LRB- |
denotes |
( |
T7120 |
25858-25862 |
IN |
denotes |
from |
T7121 |
25863-25868 |
CD |
denotes |
three |
T7122 |
25889-25898 |
NNS |
denotes |
receptors |
T7123 |
25869-25878 |
JJ |
denotes |
different |
T7124 |
25879-25888 |
JJ |
denotes |
olfactory |
T7125 |
25898-25899 |
-RRB- |
denotes |
) |
T7126 |
25899-25901 |
, |
denotes |
, |
T7127 |
25901-25903 |
PRP |
denotes |
we |
T7128 |
25910-25914 |
IN |
denotes |
that |
T7129 |
25945-25952 |
VBN |
denotes |
matched |
T7130 |
25915-25918 |
DT |
denotes |
the |
T7131 |
25927-25932 |
NN |
denotes |
piece |
T7132 |
25919-25926 |
JJ |
denotes |
missing |
T7133 |
25933-25935 |
IN |
denotes |
of |
T7134 |
25936-25944 |
NN |
denotes |
sequence |
T7135 |
25953-25962 |
RB |
denotes |
elsewhere |
T7136 |
25963-25965 |
IN |
denotes |
in |
T7137 |
25966-25969 |
DT |
denotes |
the |
T7138 |
25970-25976 |
NN |
denotes |
genome |
T7139 |
25976-25977 |
. |
denotes |
. |
T7140 |
25977-26057 |
sentence |
denotes |
Comparison with the public mouse genome assembly confirmed the distant matches. |
T7141 |
25978-25988 |
NN |
denotes |
Comparison |
T7142 |
26027-26036 |
VBD |
denotes |
confirmed |
T7143 |
25989-25993 |
IN |
denotes |
with |
T7144 |
25994-25997 |
DT |
denotes |
the |
T7145 |
26018-26026 |
NN |
denotes |
assembly |
T7146 |
25998-26004 |
JJ |
denotes |
public |
T7147 |
26005-26010 |
NN |
denotes |
mouse |
T7148 |
26011-26017 |
NN |
denotes |
genome |
T7149 |
26037-26040 |
DT |
denotes |
the |
T7150 |
26049-26056 |
NNS |
denotes |
matches |
T7151 |
26041-26048 |
JJ |
denotes |
distant |
T7152 |
26056-26057 |
. |
denotes |
. |
T7153 |
26057-26262 |
sentence |
denotes |
With such a small number of cDNAs exhibiting a possible sign of DNA recombination (a sign that could also be interpreted as chimeric cDNA clones), we conclude that such rearrangement is unlikely to occur. |
T7154 |
26058-26062 |
IN |
denotes |
With |
T7155 |
26208-26216 |
VBP |
denotes |
conclude |
T7156 |
26063-26067 |
PDT |
denotes |
such |
T7157 |
26076-26082 |
NN |
denotes |
number |
T7158 |
26068-26069 |
DT |
denotes |
a |
T7159 |
26070-26075 |
JJ |
denotes |
small |
T7160 |
26092-26102 |
VBG |
denotes |
exhibiting |
T7161 |
26083-26085 |
IN |
denotes |
of |
T7162 |
26086-26091 |
NNS |
denotes |
cDNAs |
T7163 |
26103-26104 |
DT |
denotes |
a |
T7164 |
26114-26118 |
NN |
denotes |
sign |
T7165 |
26105-26113 |
JJ |
denotes |
possible |
T7166 |
26119-26121 |
IN |
denotes |
of |
T7167 |
26122-26125 |
NN |
denotes |
DNA |
T7168 |
26126-26139 |
NN |
denotes |
recombination |
T7169 |
26140-26141 |
-LRB- |
denotes |
( |
T7170 |
26141-26142 |
DT |
denotes |
a |
T7171 |
26143-26147 |
NN |
denotes |
sign |
T7172 |
26148-26152 |
WDT |
denotes |
that |
T7173 |
26167-26178 |
VBN |
denotes |
interpreted |
T7174 |
26153-26158 |
MD |
denotes |
could |
T7175 |
26159-26163 |
RB |
denotes |
also |
T7176 |
26164-26166 |
VB |
denotes |
be |
T7177 |
26179-26181 |
IN |
denotes |
as |
T7178 |
26182-26190 |
JJ |
denotes |
chimeric |
T7179 |
26196-26202 |
NNS |
denotes |
clones |
T7180 |
26191-26195 |
NN |
denotes |
cDNA |
T7181 |
26202-26203 |
-RRB- |
denotes |
) |
T7182 |
26203-26205 |
, |
denotes |
, |
T7183 |
26205-26207 |
PRP |
denotes |
we |
T7184 |
26217-26221 |
IN |
denotes |
that |
T7185 |
26241-26243 |
VBZ |
denotes |
is |
T7186 |
26222-26226 |
JJ |
denotes |
such |
T7187 |
26227-26240 |
NN |
denotes |
rearrangement |
T7188 |
26244-26252 |
JJ |
denotes |
unlikely |
T7189 |
26253-26255 |
TO |
denotes |
to |
T7190 |
26256-26261 |
VB |
denotes |
occur |
T7191 |
26261-26262 |
. |
denotes |
. |
T7192 |
26262-26476 |
sentence |
denotes |
However, the possibility remains that DNA recombination is responsible for olfactory receptor transcriptional regulation, with the donated region contributing only promoter sequences but no part of the transcript. |
T7193 |
26263-26270 |
RB |
denotes |
However |
T7194 |
26288-26295 |
VBZ |
denotes |
remains |
T7195 |
26270-26272 |
, |
denotes |
, |
T7196 |
26272-26275 |
DT |
denotes |
the |
T7197 |
26276-26287 |
NN |
denotes |
possibility |
T7198 |
26296-26300 |
IN |
denotes |
that |
T7199 |
26319-26321 |
VBZ |
denotes |
is |
T7200 |
26301-26304 |
NN |
denotes |
DNA |
T7201 |
26305-26318 |
NN |
denotes |
recombination |
T7202 |
26322-26333 |
JJ |
denotes |
responsible |
T7203 |
26334-26337 |
IN |
denotes |
for |
T7204 |
26338-26347 |
JJ |
denotes |
olfactory |
T7205 |
26348-26356 |
NN |
denotes |
receptor |
T7206 |
26373-26383 |
NN |
denotes |
regulation |
T7207 |
26357-26372 |
JJ |
denotes |
transcriptional |
T7208 |
26383-26385 |
, |
denotes |
, |
T7209 |
26385-26389 |
IN |
denotes |
with |
T7210 |
26390-26393 |
DT |
denotes |
the |
T7211 |
26402-26408 |
NN |
denotes |
region |
T7212 |
26394-26401 |
VBN |
denotes |
donated |
T7213 |
26409-26421 |
VBG |
denotes |
contributing |
T7214 |
26422-26426 |
RB |
denotes |
only |
T7215 |
26436-26445 |
NNS |
denotes |
sequences |
T7216 |
26427-26435 |
NN |
denotes |
promoter |
T7217 |
26446-26449 |
CC |
denotes |
but |
T7218 |
26450-26452 |
DT |
denotes |
no |
T7219 |
26453-26457 |
NN |
denotes |
part |
T7220 |
26458-26460 |
IN |
denotes |
of |
T7221 |
26461-26464 |
DT |
denotes |
the |
T7222 |
26465-26475 |
NN |
denotes |
transcript |
T7223 |
26475-26476 |
. |
denotes |
. |
T7399 |
26478-26482 |
CC |
denotes |
Both |
T7400 |
26505-26514 |
NNS |
denotes |
receptors |
T7401 |
26483-26494 |
JJ |
denotes |
unclustered |
T7402 |
26495-26504 |
JJ |
denotes |
olfactory |
T7403 |
26557-26566 |
VBN |
denotes |
expressed |
T7404 |
26515-26518 |
CC |
denotes |
and |
T7405 |
26519-26528 |
JJ |
denotes |
olfactory |
T7406 |
26529-26537 |
NN |
denotes |
receptor |
T7407 |
26538-26549 |
NNS |
denotes |
pseudogenes |
T7408 |
26550-26553 |
MD |
denotes |
can |
T7409 |
26554-26556 |
VB |
denotes |
be |
T7410 |
26566-26868 |
sentence |
denotes |
We were interested in whether olfactory receptors need to be part of a cluster in the genome in order to be transcribed, or if the clustered genomic organization of olfactory receptors is simply a consequence of the fact that local duplication is the major mechanism for expanding the gene family [1]. |
T7411 |
26567-26569 |
PRP |
denotes |
We |
T7412 |
26570-26574 |
VBD |
denotes |
were |
T7413 |
26575-26585 |
JJ |
denotes |
interested |
T7414 |
26586-26588 |
IN |
denotes |
in |
T7415 |
26589-26596 |
IN |
denotes |
whether |
T7416 |
26617-26621 |
VBP |
denotes |
need |
T7417 |
26597-26606 |
JJ |
denotes |
olfactory |
T7418 |
26607-26616 |
NNS |
denotes |
receptors |
T7419 |
26622-26624 |
TO |
denotes |
to |
T7420 |
26625-26627 |
VB |
denotes |
be |
T7421 |
26628-26632 |
NN |
denotes |
part |
T7422 |
26633-26635 |
IN |
denotes |
of |
T7423 |
26636-26637 |
DT |
denotes |
a |
T7424 |
26638-26645 |
NN |
denotes |
cluster |
T7425 |
26646-26648 |
IN |
denotes |
in |
T7426 |
26649-26652 |
DT |
denotes |
the |
T7427 |
26653-26659 |
NN |
denotes |
genome |
T7428 |
26660-26662 |
IN |
denotes |
in |
T7429 |
26663-26668 |
NN |
denotes |
order |
T7430 |
26669-26671 |
TO |
denotes |
to |
T7431 |
26675-26686 |
VBN |
denotes |
transcribed |
T7432 |
26672-26674 |
VB |
denotes |
be |
T7433 |
26686-26688 |
, |
denotes |
, |
T7434 |
26688-26690 |
CC |
denotes |
or |
T7435 |
26691-26693 |
IN |
denotes |
if |
T7436 |
26752-26754 |
VBZ |
denotes |
is |
T7437 |
26694-26697 |
DT |
denotes |
the |
T7438 |
26716-26728 |
NN |
denotes |
organization |
T7439 |
26698-26707 |
JJ |
denotes |
clustered |
T7440 |
26708-26715 |
JJ |
denotes |
genomic |
T7441 |
26729-26731 |
IN |
denotes |
of |
T7442 |
26732-26741 |
JJ |
denotes |
olfactory |
T7443 |
26742-26751 |
NNS |
denotes |
receptors |
T7444 |
26755-26761 |
RB |
denotes |
simply |
T7445 |
26762-26763 |
DT |
denotes |
a |
T7446 |
26764-26775 |
NN |
denotes |
consequence |
T7447 |
26776-26778 |
IN |
denotes |
of |
T7448 |
26779-26782 |
DT |
denotes |
the |
T7449 |
26783-26787 |
NN |
denotes |
fact |
T7450 |
26788-26792 |
IN |
denotes |
that |
T7451 |
26811-26813 |
VBZ |
denotes |
is |
T7452 |
26793-26798 |
JJ |
denotes |
local |
T7453 |
26799-26810 |
NN |
denotes |
duplication |
T7454 |
26814-26817 |
DT |
denotes |
the |
T7455 |
26824-26833 |
NN |
denotes |
mechanism |
T7456 |
26818-26823 |
JJ |
denotes |
major |
T7457 |
26834-26837 |
IN |
denotes |
for |
T7458 |
26838-26847 |
VBG |
denotes |
expanding |
T7459 |
26848-26851 |
DT |
denotes |
the |
T7460 |
26857-26863 |
NN |
denotes |
family |
T7461 |
26852-26856 |
NN |
denotes |
gene |
T7462 |
26864-26865 |
-LRB- |
denotes |
[ |
T7463 |
26865-26866 |
CD |
denotes |
1 |
T7464 |
26866-26867 |
-RRB- |
denotes |
] |
T7465 |
26867-26868 |
. |
denotes |
. |
T7466 |
26868-27122 |
sentence |
denotes |
'Singleton' olfactory receptors (defined as full-length olfactory receptors without another olfactory receptor within 0.5 Mb) are more often pseudogenes than are olfactory receptors in clusters (8 out of 16 versus 271 out of 1,358; χ2 = 8.8, P < 0.005). |
T7467 |
26869-26870 |
`` |
denotes |
' |
T7468 |
26995-26998 |
VBP |
denotes |
are |
T7469 |
26870-26879 |
NN |
denotes |
Singleton |
T7470 |
26891-26900 |
NNS |
denotes |
receptors |
T7471 |
26879-26880 |
'' |
denotes |
' |
T7472 |
26881-26890 |
JJ |
denotes |
olfactory |
T7473 |
26901-26902 |
-LRB- |
denotes |
( |
T7474 |
26902-26909 |
VBN |
denotes |
defined |
T7475 |
26910-26912 |
IN |
denotes |
as |
T7476 |
26913-26917 |
JJ |
denotes |
full |
T7477 |
26918-26924 |
NN |
denotes |
length |
T7478 |
26917-26918 |
HYPH |
denotes |
- |
T7479 |
26935-26944 |
NNS |
denotes |
receptors |
T7480 |
26925-26934 |
JJ |
denotes |
olfactory |
T7481 |
26945-26952 |
IN |
denotes |
without |
T7482 |
26953-26960 |
DT |
denotes |
another |
T7483 |
26971-26979 |
NN |
denotes |
receptor |
T7484 |
26961-26970 |
JJ |
denotes |
olfactory |
T7485 |
26980-26986 |
IN |
denotes |
within |
T7486 |
26987-26990 |
CD |
denotes |
0.5 |
T7487 |
26991-26993 |
NNS |
denotes |
Mb |
T7488 |
26993-26994 |
-RRB- |
denotes |
) |
T7489 |
26999-27003 |
RBR |
denotes |
more |
T7490 |
27004-27009 |
RB |
denotes |
often |
T7491 |
27010-27021 |
NNS |
denotes |
pseudogenes |
T7492 |
27022-27026 |
IN |
denotes |
than |
T7493 |
27027-27030 |
VBP |
denotes |
are |
T7494 |
27031-27040 |
JJ |
denotes |
olfactory |
T7495 |
27041-27050 |
NNS |
denotes |
receptors |
T7496 |
27051-27053 |
IN |
denotes |
in |
T7497 |
27054-27062 |
NNS |
denotes |
clusters |
T7498 |
27063-27064 |
-LRB- |
denotes |
( |
T7499 |
27073-27075 |
CD |
denotes |
16 |
T7500 |
27064-27065 |
CD |
denotes |
8 |
T7501 |
27066-27069 |
IN |
denotes |
out |
T7502 |
27070-27072 |
IN |
denotes |
of |
T7503 |
27076-27082 |
CC |
denotes |
versus |
T7504 |
27083-27086 |
CD |
denotes |
271 |
T7505 |
27094-27099 |
CD |
denotes |
1,358 |
T7506 |
27087-27090 |
IN |
denotes |
out |
T7507 |
27091-27093 |
IN |
denotes |
of |
T7508 |
27099-27100 |
: |
denotes |
; |
T7509 |
27101-27103 |
NN |
denotes |
χ2 |
T7510 |
27106-27109 |
CD |
denotes |
8.8 |
T7511 |
27104-27105 |
SYM |
denotes |
= |
T7512 |
27109-27111 |
, |
denotes |
, |
T7513 |
27111-27112 |
NN |
denotes |
P |
T7514 |
27115-27120 |
CD |
denotes |
0.005 |
T7515 |
27113-27114 |
SYM |
denotes |
< |
T7516 |
27120-27121 |
-RRB- |
denotes |
) |
T7517 |
27121-27122 |
. |
denotes |
. |
T7518 |
27122-27373 |
sentence |
denotes |
Of the eight intact singleton olfactory receptors, two have matching cDNAs in our collection, a similar proportion as found for olfactory receptors in clusters, showing that clustering is not an absolute requirement for olfactory receptor expression. |
T7519 |
27123-27125 |
IN |
denotes |
Of |
T7520 |
27178-27182 |
VBP |
denotes |
have |
T7521 |
27126-27129 |
DT |
denotes |
the |
T7522 |
27163-27172 |
NNS |
denotes |
receptors |
T7523 |
27130-27135 |
CD |
denotes |
eight |
T7524 |
27136-27142 |
JJ |
denotes |
intact |
T7525 |
27143-27152 |
NN |
denotes |
singleton |
T7526 |
27153-27162 |
JJ |
denotes |
olfactory |
T7527 |
27172-27174 |
, |
denotes |
, |
T7528 |
27174-27177 |
CD |
denotes |
two |
T7529 |
27183-27191 |
VBG |
denotes |
matching |
T7530 |
27192-27197 |
NNS |
denotes |
cDNAs |
T7531 |
27198-27200 |
IN |
denotes |
in |
T7532 |
27201-27204 |
PRP$ |
denotes |
our |
T7533 |
27205-27215 |
NN |
denotes |
collection |
T7534 |
27215-27217 |
, |
denotes |
, |
T7535 |
27217-27218 |
DT |
denotes |
a |
T7536 |
27227-27237 |
NN |
denotes |
proportion |
T7537 |
27219-27226 |
JJ |
denotes |
similar |
T7538 |
27238-27240 |
IN |
denotes |
as |
T7539 |
27241-27246 |
VBN |
denotes |
found |
T7540 |
27247-27250 |
IN |
denotes |
for |
T7541 |
27251-27260 |
JJ |
denotes |
olfactory |
T7542 |
27261-27270 |
NNS |
denotes |
receptors |
T7543 |
27271-27273 |
IN |
denotes |
in |
T7544 |
27274-27282 |
NNS |
denotes |
clusters |
T7545 |
27282-27284 |
, |
denotes |
, |
T7546 |
27284-27291 |
VBG |
denotes |
showing |
T7547 |
27292-27296 |
IN |
denotes |
that |
T7548 |
27308-27310 |
VBZ |
denotes |
is |
T7549 |
27297-27307 |
VBG |
denotes |
clustering |
T7550 |
27311-27314 |
RB |
denotes |
not |
T7551 |
27315-27317 |
DT |
denotes |
an |
T7552 |
27327-27338 |
NN |
denotes |
requirement |
T7553 |
27318-27326 |
JJ |
denotes |
absolute |
T7554 |
27339-27342 |
IN |
denotes |
for |
T7555 |
27343-27352 |
JJ |
denotes |
olfactory |
T7556 |
27353-27361 |
NN |
denotes |
receptor |
T7557 |
27362-27372 |
NN |
denotes |
expression |
T7558 |
27372-27373 |
. |
denotes |
. |
T7559 |
27373-27571 |
sentence |
denotes |
However, it is possible these two expressed singleton genes are part of 'extended' olfactory receptor clusters - their nearest olfactory receptor neighbors are 1.7 Mb and 2.6 Mb away, respectively. |
T7560 |
27374-27381 |
RB |
denotes |
However |
T7561 |
27530-27533 |
VBP |
denotes |
are |
T7562 |
27381-27383 |
, |
denotes |
, |
T7563 |
27383-27385 |
PRP |
denotes |
it |
T7564 |
27386-27388 |
VBZ |
denotes |
is |
T7565 |
27389-27397 |
JJ |
denotes |
possible |
T7566 |
27398-27403 |
DT |
denotes |
these |
T7567 |
27428-27433 |
NNS |
denotes |
genes |
T7568 |
27404-27407 |
CD |
denotes |
two |
T7569 |
27408-27417 |
VBN |
denotes |
expressed |
T7570 |
27418-27427 |
NN |
denotes |
singleton |
T7571 |
27434-27437 |
VBP |
denotes |
are |
T7572 |
27438-27442 |
NN |
denotes |
part |
T7573 |
27443-27445 |
IN |
denotes |
of |
T7574 |
27446-27447 |
`` |
denotes |
' |
T7575 |
27447-27455 |
VBN |
denotes |
extended |
T7576 |
27476-27484 |
NNS |
denotes |
clusters |
T7577 |
27455-27456 |
'' |
denotes |
' |
T7578 |
27457-27466 |
JJ |
denotes |
olfactory |
T7579 |
27467-27475 |
NN |
denotes |
receptor |
T7580 |
27485-27486 |
: |
denotes |
- |
T7581 |
27487-27492 |
PRP$ |
denotes |
their |
T7582 |
27520-27529 |
NNS |
denotes |
neighbors |
T7583 |
27493-27500 |
JJS |
denotes |
nearest |
T7584 |
27501-27510 |
JJ |
denotes |
olfactory |
T7585 |
27511-27519 |
NN |
denotes |
receptor |
T7586 |
27534-27537 |
CD |
denotes |
1.7 |
T7587 |
27538-27540 |
NNS |
denotes |
Mb |
T7588 |
27552-27556 |
RB |
denotes |
away |
T7589 |
27541-27544 |
CC |
denotes |
and |
T7590 |
27545-27548 |
CD |
denotes |
2.6 |
T7591 |
27549-27551 |
NNS |
denotes |
Mb |
T7592 |
27556-27558 |
, |
denotes |
, |
T7593 |
27558-27570 |
RB |
denotes |
respectively |
T7594 |
27570-27571 |
. |
denotes |
. |
T7595 |
27571-27705 |
sentence |
denotes |
We also find that some olfactory receptor pseudogenes are expressed, albeit with a lower probability than intact olfactory receptors. |
T7596 |
27572-27574 |
PRP |
denotes |
We |
T7597 |
27580-27584 |
VBP |
denotes |
find |
T7598 |
27575-27579 |
RB |
denotes |
also |
T7599 |
27585-27589 |
IN |
denotes |
that |
T7600 |
27630-27639 |
VBN |
denotes |
expressed |
T7601 |
27590-27594 |
DT |
denotes |
some |
T7602 |
27614-27625 |
NNS |
denotes |
pseudogenes |
T7603 |
27595-27604 |
JJ |
denotes |
olfactory |
T7604 |
27605-27613 |
NN |
denotes |
receptor |
T7605 |
27626-27629 |
VBP |
denotes |
are |
T7606 |
27639-27641 |
, |
denotes |
, |
T7607 |
27641-27647 |
IN |
denotes |
albeit |
T7608 |
27648-27652 |
IN |
denotes |
with |
T7609 |
27653-27654 |
DT |
denotes |
a |
T7610 |
27661-27672 |
NN |
denotes |
probability |
T7611 |
27655-27660 |
JJR |
denotes |
lower |
T7612 |
27673-27677 |
IN |
denotes |
than |
T7613 |
27678-27684 |
JJ |
denotes |
intact |
T7614 |
27695-27704 |
NNS |
denotes |
receptors |
T7615 |
27685-27694 |
JJ |
denotes |
olfactory |
T7616 |
27704-27705 |
. |
denotes |
. |
T7617 |
27705-27955 |
sentence |
denotes |
Considering the 1,392 olfactory receptor gene sequences for which reliable full-length data are available, 15 out of 285 (5%) apparent pseudogenes are represented in our cDNA collection, compared to 393 out of 1,107 (36%) intact olfactory receptors. |
T7618 |
27706-27717 |
VBG |
denotes |
Considering |
T7619 |
27857-27868 |
VBN |
denotes |
represented |
T7620 |
27718-27721 |
DT |
denotes |
the |
T7621 |
27752-27761 |
NNS |
denotes |
sequences |
T7622 |
27722-27727 |
CD |
denotes |
1,392 |
T7623 |
27728-27737 |
JJ |
denotes |
olfactory |
T7624 |
27738-27746 |
NN |
denotes |
receptor |
T7625 |
27747-27751 |
NN |
denotes |
gene |
T7626 |
27762-27765 |
IN |
denotes |
for |
T7627 |
27798-27801 |
VBP |
denotes |
are |
T7628 |
27766-27771 |
WDT |
denotes |
which |
T7629 |
27772-27780 |
JJ |
denotes |
reliable |
T7630 |
27793-27797 |
NNS |
denotes |
data |
T7631 |
27781-27785 |
JJ |
denotes |
full |
T7632 |
27786-27792 |
NN |
denotes |
length |
T7633 |
27785-27786 |
HYPH |
denotes |
- |
T7634 |
27802-27811 |
JJ |
denotes |
available |
T7635 |
27811-27813 |
, |
denotes |
, |
T7636 |
27813-27815 |
CD |
denotes |
15 |
T7637 |
27823-27826 |
CD |
denotes |
285 |
T7638 |
27816-27819 |
IN |
denotes |
out |
T7639 |
27820-27822 |
IN |
denotes |
of |
T7640 |
27841-27852 |
NNS |
denotes |
pseudogenes |
T7641 |
27827-27828 |
-LRB- |
denotes |
( |
T7642 |
27829-27830 |
NN |
denotes |
% |
T7643 |
27828-27829 |
CD |
denotes |
5 |
T7644 |
27830-27831 |
-RRB- |
denotes |
) |
T7645 |
27832-27840 |
JJ |
denotes |
apparent |
T7646 |
27853-27856 |
VBP |
denotes |
are |
T7647 |
27869-27871 |
IN |
denotes |
in |
T7648 |
27872-27875 |
PRP$ |
denotes |
our |
T7649 |
27881-27891 |
NN |
denotes |
collection |
T7650 |
27876-27880 |
NN |
denotes |
cDNA |
T7651 |
27891-27893 |
, |
denotes |
, |
T7652 |
27893-27901 |
VBN |
denotes |
compared |
T7653 |
27902-27904 |
IN |
denotes |
to |
T7654 |
27905-27908 |
CD |
denotes |
393 |
T7655 |
27916-27921 |
CD |
denotes |
1,107 |
T7656 |
27909-27912 |
IN |
denotes |
out |
T7657 |
27913-27915 |
IN |
denotes |
of |
T7658 |
27945-27954 |
NNS |
denotes |
receptors |
T7659 |
27922-27923 |
-LRB- |
denotes |
( |
T7660 |
27925-27926 |
NN |
denotes |
% |
T7661 |
27923-27925 |
CD |
denotes |
36 |
T7662 |
27926-27927 |
-RRB- |
denotes |
) |
T7663 |
27928-27934 |
JJ |
denotes |
intact |
T7664 |
27935-27944 |
JJ |
denotes |
olfactory |
T7665 |
27954-27955 |
. |
denotes |
. |
T7666 |
27955-28060 |
sentence |
denotes |
However, three of these 15 'expressed pseudogenes' are intact genes in the public mouse genome sequence. |
T7667 |
27956-27963 |
RB |
denotes |
However |
T7668 |
28007-28010 |
VBP |
denotes |
are |
T7669 |
27963-27965 |
, |
denotes |
, |
T7670 |
27965-27970 |
CD |
denotes |
three |
T7671 |
27980-27982 |
CD |
denotes |
15 |
T7672 |
27971-27973 |
IN |
denotes |
of |
T7673 |
27974-27979 |
DT |
denotes |
these |
T7674 |
27994-28005 |
NNS |
denotes |
pseudogenes |
T7675 |
27983-27984 |
`` |
denotes |
' |
T7676 |
27984-27993 |
JJ |
denotes |
expressed |
T7677 |
28005-28006 |
'' |
denotes |
' |
T7678 |
28011-28017 |
JJ |
denotes |
intact |
T7679 |
28018-28023 |
NNS |
denotes |
genes |
T7680 |
28024-28026 |
IN |
denotes |
in |
T7681 |
28027-28030 |
DT |
denotes |
the |
T7682 |
28051-28059 |
NN |
denotes |
sequence |
T7683 |
28031-28037 |
JJ |
denotes |
public |
T7684 |
28038-28043 |
NN |
denotes |
mouse |
T7685 |
28044-28050 |
NN |
denotes |
genome |
T7686 |
28059-28060 |
. |
denotes |
. |
T7687 |
28060-28161 |
sentence |
denotes |
The defects in Celera's version of these genes may be due to sequencing errors or true polymorphism. |
T7688 |
28061-28064 |
DT |
denotes |
The |
T7689 |
28065-28072 |
NNS |
denotes |
defects |
T7690 |
28112-28114 |
VB |
denotes |
be |
T7691 |
28073-28075 |
IN |
denotes |
in |
T7692 |
28076-28082 |
NNP |
denotes |
Celera |
T7693 |
28085-28092 |
NN |
denotes |
version |
T7694 |
28082-28084 |
POS |
denotes |
's |
T7695 |
28093-28095 |
IN |
denotes |
of |
T7696 |
28096-28101 |
DT |
denotes |
these |
T7697 |
28102-28107 |
NNS |
denotes |
genes |
T7698 |
28108-28111 |
MD |
denotes |
may |
T7699 |
28115-28118 |
IN |
denotes |
due |
T7700 |
28119-28121 |
IN |
denotes |
to |
T7701 |
28122-28132 |
VBG |
denotes |
sequencing |
T7702 |
28133-28139 |
NNS |
denotes |
errors |
T7703 |
28140-28142 |
CC |
denotes |
or |
T7704 |
28143-28147 |
JJ |
denotes |
true |
T7705 |
28148-28160 |
NN |
denotes |
polymorphism |
T7706 |
28160-28161 |
. |
denotes |
. |
T7707 |
28161-28278 |
sentence |
denotes |
Publicly available mouse sequence confirms that 11 of the 12 remaining expressed pseudogenes are indeed pseudogenes. |
T7708 |
28162-28170 |
RB |
denotes |
Publicly |
T7709 |
28171-28180 |
JJ |
denotes |
available |
T7710 |
28187-28195 |
NN |
denotes |
sequence |
T7711 |
28181-28186 |
NN |
denotes |
mouse |
T7712 |
28196-28204 |
VBZ |
denotes |
confirms |
T7713 |
28205-28209 |
IN |
denotes |
that |
T7714 |
28255-28258 |
VBP |
denotes |
are |
T7715 |
28210-28212 |
CD |
denotes |
11 |
T7716 |
28220-28222 |
CD |
denotes |
12 |
T7717 |
28213-28215 |
IN |
denotes |
of |
T7718 |
28216-28219 |
DT |
denotes |
the |
T7719 |
28243-28254 |
NNS |
denotes |
pseudogenes |
T7720 |
28223-28232 |
VBG |
denotes |
remaining |
T7721 |
28233-28242 |
JJ |
denotes |
expressed |
T7722 |
28259-28265 |
RB |
denotes |
indeed |
T7723 |
28266-28277 |
NNS |
denotes |
pseudogenes |
T7724 |
28277-28278 |
. |
denotes |
. |
T7725 |
28278-28364 |
sentence |
denotes |
No public sequence matches the 12th 'expressed pseudogene' with 99% identity or more. |
T7726 |
28279-28281 |
DT |
denotes |
No |
T7727 |
28289-28297 |
NN |
denotes |
sequence |
T7728 |
28282-28288 |
JJ |
denotes |
public |
T7729 |
28298-28305 |
VBZ |
denotes |
matches |
T7730 |
28306-28309 |
DT |
denotes |
the |
T7731 |
28326-28336 |
NN |
denotes |
pseudogene |
T7732 |
28310-28314 |
JJ |
denotes |
12th |
T7733 |
28315-28316 |
`` |
denotes |
' |
T7734 |
28316-28325 |
JJ |
denotes |
expressed |
T7735 |
28336-28337 |
'' |
denotes |
' |
T7736 |
28338-28342 |
IN |
denotes |
with |
T7737 |
28343-28345 |
CD |
denotes |
99 |
T7738 |
28345-28346 |
NN |
denotes |
% |
T7739 |
28347-28355 |
NN |
denotes |
identity |
T7740 |
28356-28358 |
CC |
denotes |
or |
T7741 |
28359-28363 |
JJR |
denotes |
more |
T7742 |
28363-28364 |
. |
denotes |
. |
T8686 |
28377-28379 |
PRP |
denotes |
We |
T8687 |
28385-28395 |
VBN |
denotes |
identified |
T8688 |
28380-28384 |
VBP |
denotes |
have |
T8689 |
28396-28399 |
CC |
denotes |
and |
T8690 |
28400-28409 |
VBN |
denotes |
sequenced |
T8691 |
28410-28415 |
CD |
denotes |
1,264 |
T8692 |
28433-28438 |
NNS |
denotes |
cDNAs |
T8693 |
28416-28423 |
JJ |
denotes |
odorant |
T8694 |
28424-28432 |
NN |
denotes |
receptor |
T8695 |
28439-28443 |
IN |
denotes |
from |
T8696 |
28444-28447 |
CD |
denotes |
419 |
T8697 |
28467-28472 |
NNS |
denotes |
genes |
T8698 |
28448-28457 |
JJ |
denotes |
olfactory |
T8699 |
28458-28466 |
NN |
denotes |
receptor |
T8700 |
28472-28474 |
, |
denotes |
, |
T8701 |
28474-28484 |
VBG |
denotes |
confirming |
T8702 |
28485-28490 |
PRP$ |
denotes |
their |
T8703 |
28491-28501 |
NN |
denotes |
expression |
T8704 |
28502-28504 |
IN |
denotes |
in |
T8705 |
28505-28508 |
DT |
denotes |
the |
T8706 |
28519-28529 |
NN |
denotes |
epithelium |
T8707 |
28509-28518 |
JJ |
denotes |
olfactory |
T8708 |
28529-28530 |
. |
denotes |
. |
T8709 |
28530-28802 |
sentence |
denotes |
We have thus validated the similarity-based prediction of over one-third of the intact olfactory receptor genes annotated in the mouse genome [1,2], thereby vastly increasing the proportion of the family for which experimental evidence of olfactory function is available. |
T8710 |
28531-28533 |
PRP |
denotes |
We |
T8711 |
28544-28553 |
VBN |
denotes |
validated |
T8712 |
28534-28538 |
VBP |
denotes |
have |
T8713 |
28539-28543 |
RB |
denotes |
thus |
T8714 |
28554-28557 |
DT |
denotes |
the |
T8715 |
28575-28585 |
NN |
denotes |
prediction |
T8716 |
28558-28568 |
NN |
denotes |
similarity |
T8717 |
28569-28574 |
VBN |
denotes |
based |
T8718 |
28568-28569 |
HYPH |
denotes |
- |
T8719 |
28586-28588 |
IN |
denotes |
of |
T8720 |
28589-28593 |
IN |
denotes |
over |
T8721 |
28594-28597 |
CD |
denotes |
one |
T8722 |
28597-28598 |
HYPH |
denotes |
- |
T8723 |
28598-28603 |
JJ |
denotes |
third |
T8724 |
28604-28606 |
IN |
denotes |
of |
T8725 |
28607-28610 |
DT |
denotes |
the |
T8726 |
28637-28642 |
NNS |
denotes |
genes |
T8727 |
28611-28617 |
JJ |
denotes |
intact |
T8728 |
28618-28627 |
JJ |
denotes |
olfactory |
T8729 |
28628-28636 |
NN |
denotes |
receptor |
T8730 |
28643-28652 |
VBN |
denotes |
annotated |
T8731 |
28653-28655 |
IN |
denotes |
in |
T8732 |
28656-28659 |
DT |
denotes |
the |
T8733 |
28666-28672 |
NN |
denotes |
genome |
T8734 |
28660-28665 |
NN |
denotes |
mouse |
T8735 |
28673-28674 |
-LRB- |
denotes |
[ |
T8736 |
28676-28677 |
CD |
denotes |
2 |
T8737 |
28674-28675 |
CD |
denotes |
1 |
T8738 |
28675-28676 |
, |
denotes |
, |
T8739 |
28677-28678 |
-RRB- |
denotes |
] |
T8740 |
28678-28680 |
, |
denotes |
, |
T8741 |
28680-28687 |
RB |
denotes |
thereby |
T8742 |
28695-28705 |
VBG |
denotes |
increasing |
T8743 |
28688-28694 |
RB |
denotes |
vastly |
T8744 |
28706-28709 |
DT |
denotes |
the |
T8745 |
28710-28720 |
NN |
denotes |
proportion |
T8746 |
28721-28723 |
IN |
denotes |
of |
T8747 |
28724-28727 |
DT |
denotes |
the |
T8748 |
28728-28734 |
NN |
denotes |
family |
T8749 |
28735-28738 |
IN |
denotes |
for |
T8750 |
28789-28791 |
VBZ |
denotes |
is |
T8751 |
28739-28744 |
WDT |
denotes |
which |
T8752 |
28745-28757 |
JJ |
denotes |
experimental |
T8753 |
28758-28766 |
NN |
denotes |
evidence |
T8754 |
28767-28769 |
IN |
denotes |
of |
T8755 |
28770-28779 |
JJ |
denotes |
olfactory |
T8756 |
28780-28788 |
NN |
denotes |
function |
T8757 |
28792-28801 |
JJ |
denotes |
available |
T8758 |
28801-28802 |
. |
denotes |
. |
T8759 |
28802-29013 |
sentence |
denotes |
We have not found cDNAs for all olfactory receptor genes or an even phylogenetic distribution of cDNAs, probably because the libraries and/or our screen are biased toward certain olfactory receptor subfamilies. |
T8760 |
28803-28805 |
PRP |
denotes |
We |
T8761 |
28815-28820 |
VBN |
denotes |
found |
T8762 |
28806-28810 |
VBP |
denotes |
have |
T8763 |
28811-28814 |
RB |
denotes |
not |
T8764 |
28821-28826 |
NNS |
denotes |
cDNAs |
T8765 |
28827-28830 |
IN |
denotes |
for |
T8766 |
28831-28834 |
DT |
denotes |
all |
T8767 |
28854-28859 |
NNS |
denotes |
genes |
T8768 |
28835-28844 |
JJ |
denotes |
olfactory |
T8769 |
28845-28853 |
NN |
denotes |
receptor |
T8770 |
28860-28862 |
CC |
denotes |
or |
T8771 |
28863-28865 |
DT |
denotes |
an |
T8772 |
28884-28896 |
NN |
denotes |
distribution |
T8773 |
28866-28870 |
RB |
denotes |
even |
T8774 |
28871-28883 |
JJ |
denotes |
phylogenetic |
T8775 |
28897-28899 |
IN |
denotes |
of |
T8776 |
28900-28905 |
NNS |
denotes |
cDNAs |
T8777 |
28905-28907 |
, |
denotes |
, |
T8778 |
28907-28915 |
RB |
denotes |
probably |
T8779 |
28956-28959 |
VBP |
denotes |
are |
T8780 |
28916-28923 |
IN |
denotes |
because |
T8781 |
28924-28927 |
DT |
denotes |
the |
T8782 |
28928-28937 |
NNS |
denotes |
libraries |
T8783 |
28938-28941 |
CC |
denotes |
and |
T8784 |
28941-28942 |
HYPH |
denotes |
/ |
T8785 |
28942-28944 |
CC |
denotes |
or |
T8786 |
28945-28948 |
PRP$ |
denotes |
our |
T8787 |
28949-28955 |
NN |
denotes |
screen |
T8788 |
28960-28966 |
JJ |
denotes |
biased |
T8789 |
28967-28973 |
IN |
denotes |
toward |
T8790 |
28974-28981 |
JJ |
denotes |
certain |
T8791 |
29001-29012 |
NNS |
denotes |
subfamilies |
T8792 |
28982-28991 |
JJ |
denotes |
olfactory |
T8793 |
28992-29000 |
NN |
denotes |
receptor |
T8794 |
29012-29013 |
. |
denotes |
. |
T8795 |
29013-29359 |
sentence |
denotes |
Using RT-PCR with both degenerate and specific primers, we have confirmed olfactory expression of a number of additional olfactory receptors, bringing the total number of olfactory receptor genes verified in this study to 436, and ensuring that almost all phylogenetic clades have at least one representative with evidence of olfactory function. |
T8796 |
29014-29019 |
VBG |
denotes |
Using |
T8797 |
29078-29087 |
VBN |
denotes |
confirmed |
T8798 |
29020-29022 |
NN |
denotes |
RT |
T8799 |
29023-29026 |
NN |
denotes |
PCR |
T8800 |
29022-29023 |
HYPH |
denotes |
- |
T8801 |
29027-29031 |
IN |
denotes |
with |
T8802 |
29032-29036 |
CC |
denotes |
both |
T8803 |
29037-29047 |
JJ |
denotes |
degenerate |
T8804 |
29061-29068 |
NNS |
denotes |
primers |
T8805 |
29048-29051 |
CC |
denotes |
and |
T8806 |
29052-29060 |
JJ |
denotes |
specific |
T8807 |
29068-29070 |
, |
denotes |
, |
T8808 |
29070-29072 |
PRP |
denotes |
we |
T8809 |
29073-29077 |
VBP |
denotes |
have |
T8810 |
29088-29097 |
JJ |
denotes |
olfactory |
T8811 |
29098-29108 |
NN |
denotes |
expression |
T8812 |
29109-29111 |
IN |
denotes |
of |
T8813 |
29112-29113 |
DT |
denotes |
a |
T8814 |
29114-29120 |
NN |
denotes |
number |
T8815 |
29121-29123 |
IN |
denotes |
of |
T8816 |
29124-29134 |
JJ |
denotes |
additional |
T8817 |
29145-29154 |
NNS |
denotes |
receptors |
T8818 |
29135-29144 |
JJ |
denotes |
olfactory |
T8819 |
29154-29156 |
, |
denotes |
, |
T8820 |
29156-29164 |
VBG |
denotes |
bringing |
T8821 |
29165-29168 |
DT |
denotes |
the |
T8822 |
29175-29181 |
NN |
denotes |
number |
T8823 |
29169-29174 |
JJ |
denotes |
total |
T8824 |
29182-29184 |
IN |
denotes |
of |
T8825 |
29185-29194 |
JJ |
denotes |
olfactory |
T8826 |
29195-29203 |
NN |
denotes |
receptor |
T8827 |
29204-29209 |
NNS |
denotes |
genes |
T8828 |
29210-29218 |
VBN |
denotes |
verified |
T8829 |
29219-29221 |
IN |
denotes |
in |
T8830 |
29222-29226 |
DT |
denotes |
this |
T8831 |
29227-29232 |
NN |
denotes |
study |
T8832 |
29233-29235 |
IN |
denotes |
to |
T8833 |
29236-29239 |
CD |
denotes |
436 |
T8834 |
29239-29241 |
, |
denotes |
, |
T8835 |
29241-29244 |
CC |
denotes |
and |
T8836 |
29245-29253 |
VBG |
denotes |
ensuring |
T8837 |
29254-29258 |
IN |
denotes |
that |
T8838 |
29290-29294 |
VBP |
denotes |
have |
T8839 |
29259-29265 |
RB |
denotes |
almost |
T8840 |
29283-29289 |
NNS |
denotes |
clades |
T8841 |
29266-29269 |
DT |
denotes |
all |
T8842 |
29270-29282 |
JJ |
denotes |
phylogenetic |
T8843 |
29295-29297 |
RB |
denotes |
at |
T8844 |
29304-29307 |
CD |
denotes |
one |
T8845 |
29298-29303 |
RBS |
denotes |
least |
T8846 |
29308-29322 |
NN |
denotes |
representative |
T8847 |
29323-29327 |
IN |
denotes |
with |
T8848 |
29328-29336 |
NN |
denotes |
evidence |
T8849 |
29337-29339 |
IN |
denotes |
of |
T8850 |
29340-29349 |
JJ |
denotes |
olfactory |
T8851 |
29350-29358 |
NN |
denotes |
function |
T8852 |
29358-29359 |
. |
denotes |
. |
T8853 |
29359-29492 |
sentence |
denotes |
Results of our cDNA library screen suggested that some olfactory receptors are expressed at significantly higher levels than others. |
T8854 |
29360-29367 |
NNS |
denotes |
Results |
T8855 |
29395-29404 |
VBD |
denotes |
suggested |
T8856 |
29368-29370 |
IN |
denotes |
of |
T8857 |
29371-29374 |
PRP$ |
denotes |
our |
T8858 |
29388-29394 |
NN |
denotes |
screen |
T8859 |
29375-29379 |
NN |
denotes |
cDNA |
T8860 |
29380-29387 |
NN |
denotes |
library |
T8861 |
29405-29409 |
IN |
denotes |
that |
T8862 |
29439-29448 |
VBN |
denotes |
expressed |
T8863 |
29410-29414 |
DT |
denotes |
some |
T8864 |
29425-29434 |
NNS |
denotes |
receptors |
T8865 |
29415-29424 |
JJ |
denotes |
olfactory |
T8866 |
29435-29438 |
VBP |
denotes |
are |
T8867 |
29449-29451 |
IN |
denotes |
at |
T8868 |
29452-29465 |
RB |
denotes |
significantly |
T8869 |
29466-29472 |
JJR |
denotes |
higher |
T8870 |
29473-29479 |
NNS |
denotes |
levels |
T8871 |
29480-29484 |
IN |
denotes |
than |
T8872 |
29485-29491 |
NNS |
denotes |
others |
T8873 |
29491-29492 |
. |
denotes |
. |
T8874 |
29492-29656 |
sentence |
denotes |
We used quantitative PCR to show that expression levels are indeed highly variable, with one olfactory receptor expressed at almost 300 times the level of another. |
T8875 |
29493-29495 |
PRP |
denotes |
We |
T8876 |
29496-29500 |
VBD |
denotes |
used |
T8877 |
29501-29513 |
JJ |
denotes |
quantitative |
T8878 |
29514-29517 |
NN |
denotes |
PCR |
T8879 |
29518-29520 |
TO |
denotes |
to |
T8880 |
29521-29525 |
VB |
denotes |
show |
T8881 |
29526-29530 |
IN |
denotes |
that |
T8882 |
29549-29552 |
VBP |
denotes |
are |
T8883 |
29531-29541 |
NN |
denotes |
expression |
T8884 |
29542-29548 |
NNS |
denotes |
levels |
T8885 |
29553-29559 |
RB |
denotes |
indeed |
T8886 |
29560-29566 |
RB |
denotes |
highly |
T8887 |
29567-29575 |
JJ |
denotes |
variable |
T8888 |
29575-29577 |
, |
denotes |
, |
T8889 |
29577-29581 |
IN |
denotes |
with |
T8890 |
29605-29614 |
VBN |
denotes |
expressed |
T8891 |
29582-29585 |
CD |
denotes |
one |
T8892 |
29596-29604 |
NN |
denotes |
receptor |
T8893 |
29586-29595 |
JJ |
denotes |
olfactory |
T8894 |
29615-29617 |
IN |
denotes |
at |
T8895 |
29618-29624 |
RB |
denotes |
almost |
T8896 |
29625-29628 |
CD |
denotes |
300 |
T8897 |
29639-29644 |
NN |
denotes |
level |
T8898 |
29629-29634 |
NNS |
denotes |
times |
T8899 |
29635-29638 |
DT |
denotes |
the |
T8900 |
29645-29647 |
IN |
denotes |
of |
T8901 |
29648-29655 |
DT |
denotes |
another |
T8902 |
29655-29656 |
. |
denotes |
. |
T8903 |
29656-29803 |
sentence |
denotes |
Higher expression levels could be due to increased transcript number per cell and/or a greater number of olfactory neurons 'choosing' those genes. |
T8904 |
29657-29663 |
JJR |
denotes |
Higher |
T8905 |
29675-29681 |
NNS |
denotes |
levels |
T8906 |
29664-29674 |
NN |
denotes |
expression |
T8907 |
29688-29690 |
VB |
denotes |
be |
T8908 |
29682-29687 |
MD |
denotes |
could |
T8909 |
29691-29694 |
IN |
denotes |
due |
T8910 |
29695-29697 |
IN |
denotes |
to |
T8911 |
29698-29707 |
VBN |
denotes |
increased |
T8912 |
29719-29725 |
NN |
denotes |
number |
T8913 |
29708-29718 |
NN |
denotes |
transcript |
T8914 |
29726-29729 |
IN |
denotes |
per |
T8915 |
29730-29734 |
NN |
denotes |
cell |
T8916 |
29735-29738 |
CC |
denotes |
and |
T8917 |
29738-29739 |
HYPH |
denotes |
/ |
T8918 |
29739-29741 |
CC |
denotes |
or |
T8919 |
29742-29743 |
DT |
denotes |
a |
T8920 |
29752-29758 |
NN |
denotes |
number |
T8921 |
29744-29751 |
JJR |
denotes |
greater |
T8922 |
29781-29789 |
VBG |
denotes |
choosing |
T8923 |
29759-29761 |
IN |
denotes |
of |
T8924 |
29762-29771 |
JJ |
denotes |
olfactory |
T8925 |
29772-29779 |
NNS |
denotes |
neurons |
T8926 |
29780-29781 |
`` |
denotes |
' |
T8927 |
29789-29790 |
'' |
denotes |
' |
T8928 |
29791-29796 |
DT |
denotes |
those |
T8929 |
29797-29802 |
NNS |
denotes |
genes |
T8930 |
29802-29803 |
. |
denotes |
. |
T8931 |
29803-29899 |
sentence |
denotes |
For one pair of genes we tested, expression level differences appear to be due to both factors. |
T8932 |
29804-29807 |
IN |
denotes |
For |
T8933 |
29866-29872 |
VBP |
denotes |
appear |
T8934 |
29808-29811 |
CD |
denotes |
one |
T8935 |
29812-29816 |
NN |
denotes |
pair |
T8936 |
29817-29819 |
IN |
denotes |
of |
T8937 |
29820-29825 |
NNS |
denotes |
genes |
T8938 |
29826-29828 |
PRP |
denotes |
we |
T8939 |
29829-29835 |
VBD |
denotes |
tested |
T8940 |
29835-29837 |
, |
denotes |
, |
T8941 |
29837-29847 |
NN |
denotes |
expression |
T8942 |
29848-29853 |
NN |
denotes |
level |
T8943 |
29854-29865 |
NNS |
denotes |
differences |
T8944 |
29873-29875 |
TO |
denotes |
to |
T8945 |
29876-29878 |
VB |
denotes |
be |
T8946 |
29879-29882 |
IN |
denotes |
due |
T8947 |
29883-29885 |
IN |
denotes |
to |
T8948 |
29886-29890 |
DT |
denotes |
both |
T8949 |
29891-29898 |
NNS |
denotes |
factors |
T8950 |
29898-29899 |
. |
denotes |
. |
T8951 |
29899-30083 |
sentence |
denotes |
It would be interesting to collect data for additional genes to determine how the numbers of expressing cells and transcript levels per cell vary across the olfactory receptor family. |
T8952 |
29900-29902 |
PRP |
denotes |
It |
T8953 |
29909-29911 |
VB |
denotes |
be |
T8954 |
29903-29908 |
MD |
denotes |
would |
T8955 |
29912-29923 |
JJ |
denotes |
interesting |
T8956 |
29924-29926 |
TO |
denotes |
to |
T8957 |
29927-29934 |
VB |
denotes |
collect |
T8958 |
29935-29939 |
NNS |
denotes |
data |
T8959 |
29940-29943 |
IN |
denotes |
for |
T8960 |
29944-29954 |
JJ |
denotes |
additional |
T8961 |
29955-29960 |
NNS |
denotes |
genes |
T8962 |
29961-29963 |
TO |
denotes |
to |
T8963 |
29964-29973 |
VB |
denotes |
determine |
T8964 |
29974-29977 |
WRB |
denotes |
how |
T8965 |
30041-30045 |
VBP |
denotes |
vary |
T8966 |
29978-29981 |
DT |
denotes |
the |
T8967 |
29982-29989 |
NNS |
denotes |
numbers |
T8968 |
29990-29992 |
IN |
denotes |
of |
T8969 |
29993-30003 |
VBG |
denotes |
expressing |
T8970 |
30004-30009 |
NNS |
denotes |
cells |
T8971 |
30010-30013 |
CC |
denotes |
and |
T8972 |
30014-30024 |
NN |
denotes |
transcript |
T8973 |
30025-30031 |
NNS |
denotes |
levels |
T8974 |
30032-30035 |
IN |
denotes |
per |
T8975 |
30036-30040 |
NN |
denotes |
cell |
T8976 |
30046-30052 |
IN |
denotes |
across |
T8977 |
30053-30056 |
DT |
denotes |
the |
T8978 |
30076-30082 |
NN |
denotes |
family |
T8979 |
30057-30066 |
JJ |
denotes |
olfactory |
T8980 |
30067-30075 |
NN |
denotes |
receptor |
T8981 |
30082-30083 |
. |
denotes |
. |
T8982 |
30083-30375 |
sentence |
denotes |
Data from a number of previous studies also show that different olfactory receptor genes, or even copies of the same olfactory receptor transgene in different genomic locations are expressed in different numbers of cells [14,18,35], but do not address the issue of transcript level per cell. |
T8983 |
30084-30088 |
NNS |
denotes |
Data |
T8984 |
30128-30132 |
VBP |
denotes |
show |
T8985 |
30089-30093 |
IN |
denotes |
from |
T8986 |
30094-30095 |
DT |
denotes |
a |
T8987 |
30096-30102 |
NN |
denotes |
number |
T8988 |
30103-30105 |
IN |
denotes |
of |
T8989 |
30106-30114 |
JJ |
denotes |
previous |
T8990 |
30115-30122 |
NNS |
denotes |
studies |
T8991 |
30123-30127 |
RB |
denotes |
also |
T8992 |
30133-30137 |
IN |
denotes |
that |
T8993 |
30265-30274 |
VBN |
denotes |
expressed |
T8994 |
30138-30147 |
JJ |
denotes |
different |
T8995 |
30167-30172 |
NNS |
denotes |
genes |
T8996 |
30148-30157 |
JJ |
denotes |
olfactory |
T8997 |
30158-30166 |
NN |
denotes |
receptor |
T8998 |
30172-30174 |
, |
denotes |
, |
T8999 |
30174-30176 |
CC |
denotes |
or |
T9000 |
30177-30181 |
RB |
denotes |
even |
T9001 |
30182-30188 |
NNS |
denotes |
copies |
T9002 |
30189-30191 |
IN |
denotes |
of |
T9003 |
30192-30195 |
DT |
denotes |
the |
T9004 |
30220-30229 |
NN |
denotes |
transgene |
T9005 |
30196-30200 |
JJ |
denotes |
same |
T9006 |
30201-30210 |
JJ |
denotes |
olfactory |
T9007 |
30211-30219 |
NN |
denotes |
receptor |
T9008 |
30230-30232 |
IN |
denotes |
in |
T9009 |
30233-30242 |
JJ |
denotes |
different |
T9010 |
30251-30260 |
NNS |
denotes |
locations |
T9011 |
30243-30250 |
JJ |
denotes |
genomic |
T9012 |
30261-30264 |
VBP |
denotes |
are |
T9013 |
30275-30277 |
IN |
denotes |
in |
T9014 |
30278-30287 |
JJ |
denotes |
different |
T9015 |
30288-30295 |
NNS |
denotes |
numbers |
T9016 |
30296-30298 |
IN |
denotes |
of |
T9017 |
30299-30304 |
NNS |
denotes |
cells |
T9018 |
30305-30306 |
-LRB- |
denotes |
[ |
T9019 |
30312-30314 |
CD |
denotes |
35 |
T9020 |
30306-30308 |
CD |
denotes |
14 |
T9021 |
30308-30309 |
, |
denotes |
, |
T9022 |
30309-30311 |
CD |
denotes |
18 |
T9023 |
30311-30312 |
, |
denotes |
, |
T9024 |
30314-30315 |
-RRB- |
denotes |
] |
T9025 |
30315-30317 |
, |
denotes |
, |
T9026 |
30317-30320 |
CC |
denotes |
but |
T9027 |
30321-30323 |
VBP |
denotes |
do |
T9028 |
30328-30335 |
VB |
denotes |
address |
T9029 |
30324-30327 |
RB |
denotes |
not |
T9030 |
30336-30339 |
DT |
denotes |
the |
T9031 |
30340-30345 |
NN |
denotes |
issue |
T9032 |
30346-30348 |
IN |
denotes |
of |
T9033 |
30349-30359 |
NN |
denotes |
transcript |
T9034 |
30360-30365 |
NN |
denotes |
level |
T9035 |
30366-30369 |
IN |
denotes |
per |
T9036 |
30370-30374 |
NN |
denotes |
cell |
T9037 |
30374-30375 |
. |
denotes |
. |
T9038 |
30375-30565 |
sentence |
denotes |
The fact that some genes are chosen more frequently, and when chosen may be expressed at higher levels per cell, is intriguing given each olfactory neuron's single-allele expression regime. |
T9039 |
30376-30379 |
DT |
denotes |
The |
T9040 |
30380-30384 |
NN |
denotes |
fact |
T9041 |
30489-30491 |
VBZ |
denotes |
is |
T9042 |
30385-30389 |
IN |
denotes |
that |
T9043 |
30405-30411 |
VBN |
denotes |
chosen |
T9044 |
30390-30394 |
DT |
denotes |
some |
T9045 |
30395-30400 |
NNS |
denotes |
genes |
T9046 |
30401-30404 |
VBP |
denotes |
are |
T9047 |
30412-30416 |
RBR |
denotes |
more |
T9048 |
30417-30427 |
RB |
denotes |
frequently |
T9049 |
30427-30429 |
, |
denotes |
, |
T9050 |
30429-30432 |
CC |
denotes |
and |
T9051 |
30433-30437 |
WRB |
denotes |
when |
T9052 |
30438-30444 |
VBN |
denotes |
chosen |
T9053 |
30452-30461 |
VBN |
denotes |
expressed |
T9054 |
30445-30448 |
MD |
denotes |
may |
T9055 |
30449-30451 |
VB |
denotes |
be |
T9056 |
30462-30464 |
IN |
denotes |
at |
T9057 |
30465-30471 |
JJR |
denotes |
higher |
T9058 |
30472-30478 |
NNS |
denotes |
levels |
T9059 |
30479-30482 |
IN |
denotes |
per |
T9060 |
30483-30487 |
NN |
denotes |
cell |
T9061 |
30487-30489 |
, |
denotes |
, |
T9062 |
30492-30502 |
JJ |
denotes |
intriguing |
T9063 |
30503-30508 |
VBN |
denotes |
given |
T9064 |
30509-30513 |
DT |
denotes |
each |
T9065 |
30524-30530 |
NN |
denotes |
neuron |
T9066 |
30514-30523 |
JJ |
denotes |
olfactory |
T9067 |
30558-30564 |
NN |
denotes |
regime |
T9068 |
30530-30532 |
POS |
denotes |
's |
T9069 |
30533-30539 |
JJ |
denotes |
single |
T9070 |
30540-30546 |
NN |
denotes |
allele |
T9071 |
30539-30540 |
HYPH |
denotes |
- |
T9072 |
30547-30557 |
NN |
denotes |
expression |
T9073 |
30564-30565 |
. |
denotes |
. |
T9074 |
30565-30635 |
sentence |
denotes |
The observation of unequal expression leads to a number of questions. |
T9075 |
30566-30569 |
DT |
denotes |
The |
T9076 |
30570-30581 |
NN |
denotes |
observation |
T9077 |
30604-30609 |
VBZ |
denotes |
leads |
T9078 |
30582-30584 |
IN |
denotes |
of |
T9079 |
30585-30592 |
JJ |
denotes |
unequal |
T9080 |
30593-30603 |
NN |
denotes |
expression |
T9081 |
30610-30612 |
IN |
denotes |
to |
T9082 |
30613-30614 |
DT |
denotes |
a |
T9083 |
30615-30621 |
NN |
denotes |
number |
T9084 |
30622-30624 |
IN |
denotes |
of |
T9085 |
30625-30634 |
NNS |
denotes |
questions |
T9086 |
30634-30635 |
. |
denotes |
. |
T9087 |
30635-30887 |
sentence |
denotes |
It is known that each olfactory receptor is expressed in one of four zones of the olfactory epithelium [14,15]; do some zones choose from a smaller olfactory receptor sub-repertoire and thus express each olfactory receptor in a larger number of cells? |
T9088 |
30636-30638 |
PRP |
denotes |
It |
T9089 |
30642-30647 |
VBN |
denotes |
known |
T9090 |
30639-30641 |
VBZ |
denotes |
is |
T9091 |
30762-30768 |
VBP |
denotes |
choose |
T9092 |
30648-30652 |
IN |
denotes |
that |
T9093 |
30680-30689 |
VBN |
denotes |
expressed |
T9094 |
30653-30657 |
DT |
denotes |
each |
T9095 |
30668-30676 |
NN |
denotes |
receptor |
T9096 |
30658-30667 |
JJ |
denotes |
olfactory |
T9097 |
30677-30679 |
VBZ |
denotes |
is |
T9098 |
30690-30692 |
IN |
denotes |
in |
T9099 |
30693-30696 |
CD |
denotes |
one |
T9100 |
30697-30699 |
IN |
denotes |
of |
T9101 |
30700-30704 |
CD |
denotes |
four |
T9102 |
30705-30710 |
NNS |
denotes |
zones |
T9103 |
30711-30713 |
IN |
denotes |
of |
T9104 |
30714-30717 |
DT |
denotes |
the |
T9105 |
30728-30738 |
NN |
denotes |
epithelium |
T9106 |
30718-30727 |
JJ |
denotes |
olfactory |
T9107 |
30739-30740 |
-LRB- |
denotes |
[ |
T9108 |
30743-30745 |
CD |
denotes |
15 |
T9109 |
30740-30742 |
CD |
denotes |
14 |
T9110 |
30742-30743 |
, |
denotes |
, |
T9111 |
30745-30746 |
-RRB- |
denotes |
] |
T9112 |
30746-30747 |
: |
denotes |
; |
T9113 |
30748-30750 |
VB |
denotes |
do |
T9114 |
30751-30755 |
DT |
denotes |
some |
T9115 |
30756-30761 |
NNS |
denotes |
zones |
T9116 |
30769-30773 |
IN |
denotes |
from |
T9117 |
30774-30775 |
DT |
denotes |
a |
T9118 |
30803-30817 |
NN |
denotes |
sub-repertoire |
T9119 |
30776-30783 |
JJR |
denotes |
smaller |
T9120 |
30784-30793 |
JJ |
denotes |
olfactory |
T9121 |
30794-30802 |
NN |
denotes |
receptor |
T9122 |
30818-30821 |
CC |
denotes |
and |
T9123 |
30822-30826 |
RB |
denotes |
thus |
T9124 |
30827-30834 |
VB |
denotes |
express |
T9125 |
30835-30839 |
DT |
denotes |
each |
T9126 |
30850-30858 |
NN |
denotes |
receptor |
T9127 |
30840-30849 |
JJ |
denotes |
olfactory |
T9128 |
30859-30861 |
IN |
denotes |
in |
T9129 |
30862-30863 |
DT |
denotes |
a |
T9130 |
30871-30877 |
NN |
denotes |
number |
T9131 |
30864-30870 |
JJR |
denotes |
larger |
T9132 |
30878-30880 |
IN |
denotes |
of |
T9133 |
30881-30886 |
NNS |
denotes |
cells |
T9134 |
30886-30887 |
. |
denotes |
? |
T9135 |
30887-31056 |
sentence |
denotes |
We note that several apparently highly expressed olfactory receptors (gene A, this study, and MOR10 and MOR28 [36]) are expressed in zone 4 of the olfactory epithelium. |
T9136 |
30888-30890 |
PRP |
denotes |
We |
T9137 |
30891-30895 |
VBP |
denotes |
note |
T9138 |
30896-30900 |
IN |
denotes |
that |
T9139 |
31008-31017 |
VBN |
denotes |
expressed |
T9140 |
30901-30908 |
JJ |
denotes |
several |
T9141 |
30947-30956 |
NNS |
denotes |
receptors |
T9142 |
30909-30919 |
RB |
denotes |
apparently |
T9143 |
30927-30936 |
VBN |
denotes |
expressed |
T9144 |
30920-30926 |
RB |
denotes |
highly |
T9145 |
30937-30946 |
JJ |
denotes |
olfactory |
T9146 |
30957-30958 |
-LRB- |
denotes |
( |
T9147 |
30958-30962 |
NN |
denotes |
gene |
T9148 |
30963-30964 |
NN |
denotes |
A |
T9149 |
30964-30966 |
, |
denotes |
, |
T9150 |
30971-30976 |
NN |
denotes |
study |
T9151 |
30966-30970 |
DT |
denotes |
this |
T9152 |
30976-30978 |
, |
denotes |
, |
T9153 |
30978-30981 |
CC |
denotes |
and |
T9154 |
30982-30987 |
NN |
denotes |
MOR10 |
T9155 |
30988-30991 |
CC |
denotes |
and |
T9156 |
30992-30997 |
NN |
denotes |
MOR28 |
T9157 |
30998-30999 |
-LRB- |
denotes |
[ |
T9158 |
30999-31001 |
CD |
denotes |
36 |
T9159 |
31001-31002 |
-RRB- |
denotes |
] |
T9160 |
31002-31003 |
-RRB- |
denotes |
) |
T9161 |
31004-31007 |
VBP |
denotes |
are |
T9162 |
31018-31020 |
IN |
denotes |
in |
T9163 |
31021-31025 |
NN |
denotes |
zone |
T9164 |
31026-31027 |
CD |
denotes |
4 |
T9165 |
31028-31030 |
IN |
denotes |
of |
T9166 |
31031-31034 |
DT |
denotes |
the |
T9167 |
31045-31055 |
NN |
denotes |
epithelium |
T9168 |
31035-31044 |
JJ |
denotes |
olfactory |
T9169 |
31055-31056 |
. |
denotes |
. |
T9170 |
31056-31219 |
sentence |
denotes |
Does activity-dependent neuronal competition [37] contribute to increased representation of the olfactory receptors that respond to common environmental odorants? |
T9171 |
31057-31061 |
VBZ |
denotes |
Does |
T9172 |
31107-31117 |
VB |
denotes |
contribute |
T9173 |
31062-31070 |
NN |
denotes |
activity |
T9174 |
31071-31080 |
JJ |
denotes |
dependent |
T9175 |
31070-31071 |
HYPH |
denotes |
- |
T9176 |
31090-31101 |
NN |
denotes |
competition |
T9177 |
31081-31089 |
JJ |
denotes |
neuronal |
T9178 |
31102-31103 |
-LRB- |
denotes |
[ |
T9179 |
31103-31105 |
CD |
denotes |
37 |
T9180 |
31105-31106 |
-RRB- |
denotes |
] |
T9181 |
31118-31120 |
IN |
denotes |
to |
T9182 |
31121-31130 |
VBN |
denotes |
increased |
T9183 |
31131-31145 |
NN |
denotes |
representation |
T9184 |
31146-31148 |
IN |
denotes |
of |
T9185 |
31149-31152 |
DT |
denotes |
the |
T9186 |
31163-31172 |
NNS |
denotes |
receptors |
T9187 |
31153-31162 |
JJ |
denotes |
olfactory |
T9188 |
31173-31177 |
WDT |
denotes |
that |
T9189 |
31178-31185 |
VBP |
denotes |
respond |
T9190 |
31186-31188 |
IN |
denotes |
to |
T9191 |
31189-31195 |
JJ |
denotes |
common |
T9192 |
31210-31218 |
NNS |
denotes |
odorants |
T9193 |
31196-31209 |
JJ |
denotes |
environmental |
T9194 |
31218-31219 |
. |
denotes |
? |
T9195 |
31219-31288 |
sentence |
denotes |
Do the favored olfactory receptors have stronger promoter sequences? |
T9196 |
31220-31222 |
VBP |
denotes |
Do |
T9197 |
31255-31259 |
VB |
denotes |
have |
T9198 |
31223-31226 |
DT |
denotes |
the |
T9199 |
31245-31254 |
NNS |
denotes |
receptors |
T9200 |
31227-31234 |
JJ |
denotes |
favored |
T9201 |
31235-31244 |
JJ |
denotes |
olfactory |
T9202 |
31260-31268 |
JJR |
denotes |
stronger |
T9203 |
31278-31287 |
NNS |
denotes |
sequences |
T9204 |
31269-31277 |
NN |
denotes |
promoter |
T9205 |
31287-31288 |
. |
denotes |
? |
T9206 |
31288-31404 |
sentence |
denotes |
Are some olfactory receptor mRNAs more stable than others, leading to higher transcript levels per expressing cell? |
T9207 |
31289-31292 |
VBP |
denotes |
Are |
T9208 |
31293-31297 |
DT |
denotes |
some |
T9209 |
31317-31322 |
NNS |
denotes |
mRNAs |
T9210 |
31298-31307 |
JJ |
denotes |
olfactory |
T9211 |
31308-31316 |
NN |
denotes |
receptor |
T9212 |
31323-31327 |
RBR |
denotes |
more |
T9213 |
31328-31334 |
JJ |
denotes |
stable |
T9214 |
31335-31339 |
IN |
denotes |
than |
T9215 |
31340-31346 |
NNS |
denotes |
others |
T9216 |
31346-31348 |
, |
denotes |
, |
T9217 |
31348-31355 |
VBG |
denotes |
leading |
T9218 |
31356-31358 |
IN |
denotes |
to |
T9219 |
31359-31365 |
JJR |
denotes |
higher |
T9220 |
31377-31383 |
NNS |
denotes |
levels |
T9221 |
31366-31376 |
NN |
denotes |
transcript |
T9222 |
31384-31387 |
IN |
denotes |
per |
T9223 |
31388-31398 |
VBG |
denotes |
expressing |
T9224 |
31399-31403 |
NN |
denotes |
cell |
T9225 |
31403-31404 |
. |
denotes |
? |
T9226 |
31404-31514 |
sentence |
denotes |
Are the favored olfactory receptors in more open chromatin conformation or more accessible genomic locations? |
T9227 |
31405-31408 |
VBP |
denotes |
Are |
T9228 |
31409-31412 |
DT |
denotes |
the |
T9229 |
31431-31440 |
NNS |
denotes |
receptors |
T9230 |
31413-31420 |
JJ |
denotes |
favored |
T9231 |
31421-31430 |
JJ |
denotes |
olfactory |
T9232 |
31441-31443 |
IN |
denotes |
in |
T9233 |
31444-31448 |
RBR |
denotes |
more |
T9234 |
31449-31453 |
JJ |
denotes |
open |
T9235 |
31464-31476 |
NN |
denotes |
conformation |
T9236 |
31454-31463 |
NN |
denotes |
chromatin |
T9237 |
31477-31479 |
CC |
denotes |
or |
T9238 |
31480-31484 |
RBR |
denotes |
more |
T9239 |
31485-31495 |
JJ |
denotes |
accessible |
T9240 |
31504-31513 |
NNS |
denotes |
locations |
T9241 |
31496-31503 |
JJ |
denotes |
genomic |
T9242 |
31513-31514 |
. |
denotes |
? |
T9243 |
31514-31918 |
sentence |
denotes |
Transcription of apparent 'singleton' olfactory receptor genes (0.5 Mb or more from the nearest other olfactory receptor gene) suggests that there is no absolute requirement for genomic clustering for an olfactory receptor to be transcribed, consistent with observations that small olfactory receptor transgenes can be expressed correctly when integrated outside native olfactory receptor clusters [35]. |
T9244 |
31515-31528 |
NN |
denotes |
Transcription |
T9245 |
31642-31650 |
VBZ |
denotes |
suggests |
T9246 |
31529-31531 |
IN |
denotes |
of |
T9247 |
31532-31540 |
JJ |
denotes |
apparent |
T9248 |
31572-31577 |
NNS |
denotes |
genes |
T9249 |
31541-31542 |
`` |
denotes |
' |
T9250 |
31542-31551 |
NN |
denotes |
singleton |
T9251 |
31551-31552 |
'' |
denotes |
' |
T9252 |
31553-31562 |
JJ |
denotes |
olfactory |
T9253 |
31563-31571 |
NN |
denotes |
receptor |
T9254 |
31578-31579 |
-LRB- |
denotes |
( |
T9255 |
31583-31585 |
NNS |
denotes |
Mb |
T9256 |
31579-31582 |
CD |
denotes |
0.5 |
T9257 |
31586-31588 |
CC |
denotes |
or |
T9258 |
31589-31593 |
JJR |
denotes |
more |
T9259 |
31594-31598 |
IN |
denotes |
from |
T9260 |
31599-31602 |
DT |
denotes |
the |
T9261 |
31636-31640 |
NN |
denotes |
gene |
T9262 |
31603-31610 |
JJS |
denotes |
nearest |
T9263 |
31611-31616 |
JJ |
denotes |
other |
T9264 |
31617-31626 |
JJ |
denotes |
olfactory |
T9265 |
31627-31635 |
NN |
denotes |
receptor |
T9266 |
31640-31641 |
-RRB- |
denotes |
) |
T9267 |
31651-31655 |
IN |
denotes |
that |
T9268 |
31662-31664 |
VBZ |
denotes |
is |
T9269 |
31656-31661 |
EX |
denotes |
there |
T9270 |
31665-31667 |
DT |
denotes |
no |
T9271 |
31677-31688 |
NN |
denotes |
requirement |
T9272 |
31668-31676 |
JJ |
denotes |
absolute |
T9273 |
31689-31692 |
IN |
denotes |
for |
T9274 |
31693-31700 |
JJ |
denotes |
genomic |
T9275 |
31701-31711 |
NN |
denotes |
clustering |
T9276 |
31712-31715 |
IN |
denotes |
for |
T9277 |
31744-31755 |
VBN |
denotes |
transcribed |
T9278 |
31716-31718 |
DT |
denotes |
an |
T9279 |
31729-31737 |
NN |
denotes |
receptor |
T9280 |
31719-31728 |
JJ |
denotes |
olfactory |
T9281 |
31738-31740 |
TO |
denotes |
to |
T9282 |
31741-31743 |
VB |
denotes |
be |
T9283 |
31755-31757 |
, |
denotes |
, |
T9284 |
31757-31767 |
JJ |
denotes |
consistent |
T9285 |
31768-31772 |
IN |
denotes |
with |
T9286 |
31773-31785 |
NNS |
denotes |
observations |
T9287 |
31786-31790 |
IN |
denotes |
that |
T9288 |
31834-31843 |
VBN |
denotes |
expressed |
T9289 |
31791-31796 |
JJ |
denotes |
small |
T9290 |
31816-31826 |
NNS |
denotes |
transgenes |
T9291 |
31797-31806 |
JJ |
denotes |
olfactory |
T9292 |
31807-31815 |
NN |
denotes |
receptor |
T9293 |
31827-31830 |
MD |
denotes |
can |
T9294 |
31831-31833 |
VB |
denotes |
be |
T9295 |
31844-31853 |
RB |
denotes |
correctly |
T9296 |
31854-31858 |
WRB |
denotes |
when |
T9297 |
31859-31869 |
VBN |
denotes |
integrated |
T9298 |
31870-31877 |
IN |
denotes |
outside |
T9299 |
31878-31884 |
JJ |
denotes |
native |
T9300 |
31904-31912 |
NNS |
denotes |
clusters |
T9301 |
31885-31894 |
JJ |
denotes |
olfactory |
T9302 |
31895-31903 |
NN |
denotes |
receptor |
T9303 |
31913-31914 |
-LRB- |
denotes |
[ |
T9304 |
31914-31916 |
CD |
denotes |
35 |
T9305 |
31916-31917 |
-RRB- |
denotes |
] |
T9306 |
31917-31918 |
. |
denotes |
. |
T9307 |
31918-32187 |
sentence |
denotes |
However, the high pseudogene count among singleton olfactory receptor genes (50%, versus 20% for clustered olfactory receptor genes) suggests that not all genomic locations are favorable for olfactory receptor gene survival, perhaps due to transcriptional constraints. |
T9308 |
31919-31926 |
RB |
denotes |
However |
T9309 |
32052-32060 |
VBZ |
denotes |
suggests |
T9310 |
31926-31928 |
, |
denotes |
, |
T9311 |
31928-31931 |
DT |
denotes |
the |
T9312 |
31948-31953 |
NN |
denotes |
count |
T9313 |
31932-31936 |
JJ |
denotes |
high |
T9314 |
31937-31947 |
NN |
denotes |
pseudogene |
T9315 |
31954-31959 |
IN |
denotes |
among |
T9316 |
31960-31969 |
NN |
denotes |
singleton |
T9317 |
31989-31994 |
NNS |
denotes |
genes |
T9318 |
31970-31979 |
JJ |
denotes |
olfactory |
T9319 |
31980-31988 |
NN |
denotes |
receptor |
T9320 |
31995-31996 |
-LRB- |
denotes |
( |
T9321 |
31996-31998 |
CD |
denotes |
50 |
T9322 |
31998-31999 |
NN |
denotes |
% |
T9323 |
31999-32001 |
, |
denotes |
, |
T9324 |
32001-32007 |
CC |
denotes |
versus |
T9325 |
32008-32010 |
CD |
denotes |
20 |
T9326 |
32010-32011 |
NN |
denotes |
% |
T9327 |
32012-32015 |
IN |
denotes |
for |
T9328 |
32016-32025 |
VBN |
denotes |
clustered |
T9329 |
32045-32050 |
NNS |
denotes |
genes |
T9330 |
32026-32035 |
JJ |
denotes |
olfactory |
T9331 |
32036-32044 |
NN |
denotes |
receptor |
T9332 |
32050-32051 |
-RRB- |
denotes |
) |
T9333 |
32061-32065 |
IN |
denotes |
that |
T9334 |
32092-32095 |
VBP |
denotes |
are |
T9335 |
32066-32069 |
RB |
denotes |
not |
T9336 |
32082-32091 |
NNS |
denotes |
locations |
T9337 |
32070-32073 |
DT |
denotes |
all |
T9338 |
32074-32081 |
JJ |
denotes |
genomic |
T9339 |
32096-32105 |
JJ |
denotes |
favorable |
T9340 |
32106-32109 |
IN |
denotes |
for |
T9341 |
32110-32119 |
JJ |
denotes |
olfactory |
T9342 |
32120-32128 |
NN |
denotes |
receptor |
T9343 |
32134-32142 |
NN |
denotes |
survival |
T9344 |
32129-32133 |
NN |
denotes |
gene |
T9345 |
32142-32144 |
, |
denotes |
, |
T9346 |
32144-32151 |
RB |
denotes |
perhaps |
T9347 |
32152-32155 |
IN |
denotes |
due |
T9348 |
32156-32158 |
IN |
denotes |
to |
T9349 |
32159-32174 |
JJ |
denotes |
transcriptional |
T9350 |
32175-32186 |
NNS |
denotes |
constraints |
T9351 |
32186-32187 |
. |
denotes |
. |
T9352 |
32187-32450 |
sentence |
denotes |
It is also possible that evolutionary factors may be responsible for reduced pseudogene content of clustered olfactory receptors - gene conversion between neighboring olfactory receptors could rescue inactivating mutations in clustered genes, but not singletons. |
T9353 |
32188-32190 |
PRP |
denotes |
It |
T9354 |
32191-32193 |
VBZ |
denotes |
is |
T9355 |
32381-32387 |
VB |
denotes |
rescue |
T9356 |
32194-32198 |
RB |
denotes |
also |
T9357 |
32199-32207 |
JJ |
denotes |
possible |
T9358 |
32208-32212 |
IN |
denotes |
that |
T9359 |
32238-32240 |
VB |
denotes |
be |
T9360 |
32213-32225 |
JJ |
denotes |
evolutionary |
T9361 |
32226-32233 |
NNS |
denotes |
factors |
T9362 |
32234-32237 |
MD |
denotes |
may |
T9363 |
32241-32252 |
JJ |
denotes |
responsible |
T9364 |
32253-32256 |
IN |
denotes |
for |
T9365 |
32257-32264 |
JJ |
denotes |
reduced |
T9366 |
32276-32283 |
NN |
denotes |
content |
T9367 |
32265-32275 |
NN |
denotes |
pseudogene |
T9368 |
32284-32286 |
IN |
denotes |
of |
T9369 |
32287-32296 |
JJ |
denotes |
clustered |
T9370 |
32307-32316 |
NNS |
denotes |
receptors |
T9371 |
32297-32306 |
JJ |
denotes |
olfactory |
T9372 |
32317-32318 |
HYPH |
denotes |
- |
T9373 |
32319-32323 |
NN |
denotes |
gene |
T9374 |
32324-32334 |
NN |
denotes |
conversion |
T9375 |
32335-32342 |
IN |
denotes |
between |
T9376 |
32343-32354 |
VBG |
denotes |
neighboring |
T9377 |
32365-32374 |
NNS |
denotes |
receptors |
T9378 |
32355-32364 |
JJ |
denotes |
olfactory |
T9379 |
32375-32380 |
MD |
denotes |
could |
T9380 |
32388-32400 |
VBG |
denotes |
inactivating |
T9381 |
32401-32410 |
NNS |
denotes |
mutations |
T9382 |
32411-32413 |
IN |
denotes |
in |
T9383 |
32414-32423 |
JJ |
denotes |
clustered |
T9384 |
32424-32429 |
NNS |
denotes |
genes |
T9385 |
32429-32431 |
, |
denotes |
, |
T9386 |
32431-32434 |
CC |
denotes |
but |
T9387 |
32435-32438 |
RB |
denotes |
not |
T9388 |
32439-32449 |
NNS |
denotes |
singletons |
T9389 |
32449-32450 |
. |
denotes |
. |
T9390 |
32450-32659 |
sentence |
denotes |
Before these questions about olfactory receptor gene choice can be answered, it will be important to measure expression levels of a larger number of genes, perhaps using an olfactory receptor gene microarray. |
T9391 |
32451-32457 |
IN |
denotes |
Before |
T9392 |
32518-32526 |
VBN |
denotes |
answered |
T9393 |
32458-32463 |
DT |
denotes |
these |
T9394 |
32464-32473 |
NNS |
denotes |
questions |
T9395 |
32474-32479 |
IN |
denotes |
about |
T9396 |
32480-32489 |
JJ |
denotes |
olfactory |
T9397 |
32490-32498 |
NN |
denotes |
receptor |
T9398 |
32499-32503 |
NN |
denotes |
gene |
T9399 |
32504-32510 |
NN |
denotes |
choice |
T9400 |
32511-32514 |
MD |
denotes |
can |
T9401 |
32515-32517 |
VB |
denotes |
be |
T9402 |
32536-32538 |
VB |
denotes |
be |
T9403 |
32526-32528 |
, |
denotes |
, |
T9404 |
32528-32530 |
PRP |
denotes |
it |
T9405 |
32531-32535 |
MD |
denotes |
will |
T9406 |
32539-32548 |
JJ |
denotes |
important |
T9407 |
32549-32551 |
TO |
denotes |
to |
T9408 |
32552-32559 |
VB |
denotes |
measure |
T9409 |
32560-32570 |
NN |
denotes |
expression |
T9410 |
32571-32577 |
NNS |
denotes |
levels |
T9411 |
32578-32580 |
IN |
denotes |
of |
T9412 |
32581-32582 |
DT |
denotes |
a |
T9413 |
32590-32596 |
NN |
denotes |
number |
T9414 |
32583-32589 |
JJR |
denotes |
larger |
T9415 |
32597-32599 |
IN |
denotes |
of |
T9416 |
32600-32605 |
NNS |
denotes |
genes |
T9417 |
32605-32607 |
, |
denotes |
, |
T9418 |
32607-32614 |
RB |
denotes |
perhaps |
T9419 |
32615-32620 |
VBG |
denotes |
using |
T9420 |
32621-32623 |
DT |
denotes |
an |
T9421 |
32648-32658 |
NN |
denotes |
microarray |
T9422 |
32624-32633 |
JJ |
denotes |
olfactory |
T9423 |
32634-32642 |
NN |
denotes |
receptor |
T9424 |
32643-32647 |
NN |
denotes |
gene |
T9425 |
32658-32659 |
. |
denotes |
. |
T9426 |
32659-32779 |
sentence |
denotes |
Our study provides at least partial data about the upstream transcript structures of over 300 olfactory receptor genes. |
T9427 |
32660-32663 |
PRP$ |
denotes |
Our |
T9428 |
32664-32669 |
NN |
denotes |
study |
T9429 |
32670-32678 |
VBZ |
denotes |
provides |
T9430 |
32679-32681 |
RB |
denotes |
at |
T9431 |
32682-32687 |
RBS |
denotes |
least |
T9432 |
32688-32695 |
JJ |
denotes |
partial |
T9433 |
32696-32700 |
NNS |
denotes |
data |
T9434 |
32701-32706 |
IN |
denotes |
about |
T9435 |
32707-32710 |
DT |
denotes |
the |
T9436 |
32731-32741 |
NNS |
denotes |
structures |
T9437 |
32711-32719 |
JJ |
denotes |
upstream |
T9438 |
32720-32730 |
NN |
denotes |
transcript |
T9439 |
32742-32744 |
IN |
denotes |
of |
T9440 |
32745-32749 |
IN |
denotes |
over |
T9441 |
32750-32753 |
CD |
denotes |
300 |
T9442 |
32773-32778 |
NNS |
denotes |
genes |
T9443 |
32754-32763 |
JJ |
denotes |
olfactory |
T9444 |
32764-32772 |
NN |
denotes |
receptor |
T9445 |
32778-32779 |
. |
denotes |
. |
T9446 |
32779-33005 |
sentence |
denotes |
These data provide tentative locations of a large set of promoter regions, allowing computational searches for shared sequence motifs that might be involved in the intriguing transcriptional regulation of olfactory receptors. |
T9447 |
32780-32785 |
DT |
denotes |
These |
T9448 |
32786-32790 |
NNS |
denotes |
data |
T9449 |
32791-32798 |
VBP |
denotes |
provide |
T9450 |
32799-32808 |
JJ |
denotes |
tentative |
T9451 |
32809-32818 |
NNS |
denotes |
locations |
T9452 |
32819-32821 |
IN |
denotes |
of |
T9453 |
32822-32823 |
DT |
denotes |
a |
T9454 |
32830-32833 |
NN |
denotes |
set |
T9455 |
32824-32829 |
JJ |
denotes |
large |
T9456 |
32834-32836 |
IN |
denotes |
of |
T9457 |
32837-32845 |
NN |
denotes |
promoter |
T9458 |
32846-32853 |
NNS |
denotes |
regions |
T9459 |
32853-32855 |
, |
denotes |
, |
T9460 |
32855-32863 |
VBG |
denotes |
allowing |
T9461 |
32864-32877 |
JJ |
denotes |
computational |
T9462 |
32878-32886 |
NNS |
denotes |
searches |
T9463 |
32887-32890 |
IN |
denotes |
for |
T9464 |
32891-32897 |
VBN |
denotes |
shared |
T9465 |
32907-32913 |
NNS |
denotes |
motifs |
T9466 |
32898-32906 |
NN |
denotes |
sequence |
T9467 |
32914-32918 |
WDT |
denotes |
that |
T9468 |
32928-32936 |
VBN |
denotes |
involved |
T9469 |
32919-32924 |
MD |
denotes |
might |
T9470 |
32925-32927 |
VB |
denotes |
be |
T9471 |
32937-32939 |
IN |
denotes |
in |
T9472 |
32940-32943 |
DT |
denotes |
the |
T9473 |
32971-32981 |
NN |
denotes |
regulation |
T9474 |
32944-32954 |
JJ |
denotes |
intriguing |
T9475 |
32955-32970 |
JJ |
denotes |
transcriptional |
T9476 |
32982-32984 |
IN |
denotes |
of |
T9477 |
32985-32994 |
JJ |
denotes |
olfactory |
T9478 |
32995-33004 |
NNS |
denotes |
receptors |
T9479 |
33004-33005 |
. |
denotes |
. |
T9480 |
33005-33123 |
sentence |
denotes |
However, given that not all cDNAs are full-length clones, some of these candidates will not be true promoter regions. |
T9481 |
33006-33013 |
RB |
denotes |
However |
T9482 |
33098-33100 |
VB |
denotes |
be |
T9483 |
33013-33015 |
, |
denotes |
, |
T9484 |
33015-33020 |
VBN |
denotes |
given |
T9485 |
33021-33025 |
IN |
denotes |
that |
T9486 |
33040-33043 |
VBP |
denotes |
are |
T9487 |
33026-33029 |
RB |
denotes |
not |
T9488 |
33034-33039 |
NNS |
denotes |
cDNAs |
T9489 |
33030-33033 |
DT |
denotes |
all |
T9490 |
33044-33048 |
JJ |
denotes |
full |
T9491 |
33049-33055 |
NN |
denotes |
length |
T9492 |
33048-33049 |
HYPH |
denotes |
- |
T9493 |
33056-33062 |
NNS |
denotes |
clones |
T9494 |
33062-33064 |
, |
denotes |
, |
T9495 |
33064-33068 |
DT |
denotes |
some |
T9496 |
33069-33071 |
IN |
denotes |
of |
T9497 |
33072-33077 |
DT |
denotes |
these |
T9498 |
33078-33088 |
NNS |
denotes |
candidates |
T9499 |
33089-33093 |
MD |
denotes |
will |
T9500 |
33094-33097 |
RB |
denotes |
not |
T9501 |
33101-33105 |
JJ |
denotes |
true |
T9502 |
33115-33122 |
NNS |
denotes |
regions |
T9503 |
33106-33114 |
NN |
denotes |
promoter |
T9504 |
33122-33123 |
. |
denotes |
. |
T9505 |
33123-33302 |
sentence |
denotes |
The 5' UTR sequences we obtained will also aid in the design of experimental probes, for example, for in situ hybridizations or to immobilize on an olfactory receptor microarray. |
T9506 |
33124-33127 |
DT |
denotes |
The |
T9507 |
33135-33144 |
NNS |
denotes |
sequences |
T9508 |
33128-33129 |
CD |
denotes |
5 |
T9509 |
33131-33134 |
NN |
denotes |
UTR |
T9510 |
33129-33130 |
SYM |
denotes |
' |
T9511 |
33167-33170 |
VB |
denotes |
aid |
T9512 |
33145-33147 |
PRP |
denotes |
we |
T9513 |
33148-33156 |
VBD |
denotes |
obtained |
T9514 |
33157-33161 |
MD |
denotes |
will |
T9515 |
33162-33166 |
RB |
denotes |
also |
T9516 |
33171-33173 |
IN |
denotes |
in |
T9517 |
33174-33177 |
DT |
denotes |
the |
T9518 |
33178-33184 |
NN |
denotes |
design |
T9519 |
33185-33187 |
IN |
denotes |
of |
T9520 |
33188-33200 |
JJ |
denotes |
experimental |
T9521 |
33201-33207 |
NNS |
denotes |
probes |
T9522 |
33207-33209 |
, |
denotes |
, |
T9523 |
33209-33212 |
IN |
denotes |
for |
T9524 |
33213-33220 |
NN |
denotes |
example |
T9525 |
33220-33222 |
, |
denotes |
, |
T9526 |
33222-33225 |
IN |
denotes |
for |
T9527 |
33226-33228 |
FW |
denotes |
in |
T9528 |
33229-33233 |
FW |
denotes |
situ |
T9529 |
33234-33248 |
NNS |
denotes |
hybridizations |
T9530 |
33249-33251 |
CC |
denotes |
or |
T9531 |
33252-33254 |
TO |
denotes |
to |
T9532 |
33255-33265 |
VB |
denotes |
immobilize |
T9533 |
33266-33268 |
IN |
denotes |
on |
T9534 |
33269-33271 |
DT |
denotes |
an |
T9535 |
33291-33301 |
NN |
denotes |
microarray |
T9536 |
33272-33281 |
JJ |
denotes |
olfactory |
T9537 |
33282-33290 |
NN |
denotes |
receptor |
T9538 |
33301-33302 |
. |
denotes |
. |
T9539 |
33302-33408 |
sentence |
denotes |
One of the challenges of such an array will be to design unique probes with which to represent each gene. |
T9540 |
33303-33306 |
CD |
denotes |
One |
T9541 |
33347-33349 |
VB |
denotes |
be |
T9542 |
33307-33309 |
IN |
denotes |
of |
T9543 |
33310-33313 |
DT |
denotes |
the |
T9544 |
33314-33324 |
NNS |
denotes |
challenges |
T9545 |
33325-33327 |
IN |
denotes |
of |
T9546 |
33328-33332 |
PDT |
denotes |
such |
T9547 |
33336-33341 |
NN |
denotes |
array |
T9548 |
33333-33335 |
DT |
denotes |
an |
T9549 |
33342-33346 |
MD |
denotes |
will |
T9550 |
33350-33352 |
TO |
denotes |
to |
T9551 |
33353-33359 |
VB |
denotes |
design |
T9552 |
33360-33366 |
JJ |
denotes |
unique |
T9553 |
33367-33373 |
NNS |
denotes |
probes |
T9554 |
33374-33378 |
IN |
denotes |
with |
T9555 |
33388-33397 |
VB |
denotes |
represent |
T9556 |
33379-33384 |
WDT |
denotes |
which |
T9557 |
33385-33387 |
TO |
denotes |
to |
T9558 |
33398-33402 |
DT |
denotes |
each |
T9559 |
33403-33407 |
NN |
denotes |
gene |
T9560 |
33407-33408 |
. |
denotes |
. |
T9561 |
33408-33509 |
sentence |
denotes |
Often, the coding region of olfactory receptors is highly similar between recently duplicated genes. |
T9562 |
33409-33414 |
RB |
denotes |
Often |
T9563 |
33457-33459 |
VBZ |
denotes |
is |
T9564 |
33414-33416 |
, |
denotes |
, |
T9565 |
33416-33419 |
DT |
denotes |
the |
T9566 |
33427-33433 |
NN |
denotes |
region |
T9567 |
33420-33426 |
VBG |
denotes |
coding |
T9568 |
33434-33436 |
IN |
denotes |
of |
T9569 |
33437-33446 |
JJ |
denotes |
olfactory |
T9570 |
33447-33456 |
NNS |
denotes |
receptors |
T9571 |
33460-33466 |
RB |
denotes |
highly |
T9572 |
33467-33474 |
JJ |
denotes |
similar |
T9573 |
33475-33482 |
IN |
denotes |
between |
T9574 |
33483-33491 |
RB |
denotes |
recently |
T9575 |
33492-33502 |
VBN |
denotes |
duplicated |
T9576 |
33503-33508 |
NNS |
denotes |
genes |
T9577 |
33508-33509 |
. |
denotes |
. |
T9578 |
33509-33658 |
sentence |
denotes |
Many pairs of similar olfactory receptors show more sequence divergence in the UTRs than the protein-coding region (J.Y., unpublished observations). |
T9579 |
33510-33514 |
JJ |
denotes |
Many |
T9580 |
33515-33520 |
NNS |
denotes |
pairs |
T9581 |
33552-33556 |
VBP |
denotes |
show |
T9582 |
33521-33523 |
IN |
denotes |
of |
T9583 |
33524-33531 |
JJ |
denotes |
similar |
T9584 |
33542-33551 |
NNS |
denotes |
receptors |
T9585 |
33532-33541 |
JJ |
denotes |
olfactory |
T9586 |
33557-33561 |
JJR |
denotes |
more |
T9587 |
33571-33581 |
NN |
denotes |
divergence |
T9588 |
33562-33570 |
NN |
denotes |
sequence |
T9589 |
33582-33584 |
IN |
denotes |
in |
T9590 |
33585-33588 |
DT |
denotes |
the |
T9591 |
33589-33593 |
NNS |
denotes |
UTRs |
T9592 |
33594-33598 |
IN |
denotes |
than |
T9593 |
33599-33602 |
DT |
denotes |
the |
T9594 |
33618-33624 |
NN |
denotes |
region |
T9595 |
33603-33610 |
NN |
denotes |
protein |
T9596 |
33611-33617 |
VBG |
denotes |
coding |
T9597 |
33610-33611 |
HYPH |
denotes |
- |
T9598 |
33625-33626 |
-LRB- |
denotes |
( |
T9599 |
33626-33630 |
NNP |
denotes |
J.Y. |
T9600 |
33630-33632 |
, |
denotes |
, |
T9601 |
33632-33643 |
JJ |
denotes |
unpublished |
T9602 |
33644-33656 |
NNS |
denotes |
observations |
T9603 |
33656-33657 |
-RRB- |
denotes |
) |
T9604 |
33657-33658 |
. |
denotes |
. |
T9605 |
33658-33818 |
sentence |
denotes |
The UTRs would therefore make a better choice of sequence from which to design unique oligonucleotides to distinguish closely related olfactory receptor genes. |
T9606 |
33659-33662 |
DT |
denotes |
The |
T9607 |
33663-33667 |
NNS |
denotes |
UTRs |
T9608 |
33684-33688 |
VB |
denotes |
make |
T9609 |
33668-33673 |
MD |
denotes |
would |
T9610 |
33674-33683 |
RB |
denotes |
therefore |
T9611 |
33689-33690 |
DT |
denotes |
a |
T9612 |
33698-33704 |
NN |
denotes |
choice |
T9613 |
33691-33697 |
JJR |
denotes |
better |
T9614 |
33705-33707 |
IN |
denotes |
of |
T9615 |
33708-33716 |
NN |
denotes |
sequence |
T9616 |
33717-33721 |
IN |
denotes |
from |
T9617 |
33731-33737 |
VB |
denotes |
design |
T9618 |
33722-33727 |
WDT |
denotes |
which |
T9619 |
33728-33730 |
TO |
denotes |
to |
T9620 |
33738-33744 |
JJ |
denotes |
unique |
T9621 |
33745-33761 |
NNS |
denotes |
oligonucleotides |
T9622 |
33762-33764 |
TO |
denotes |
to |
T9623 |
33765-33776 |
VB |
denotes |
distinguish |
T9624 |
33777-33784 |
RB |
denotes |
closely |
T9625 |
33785-33792 |
JJ |
denotes |
related |
T9626 |
33812-33817 |
NNS |
denotes |
genes |
T9627 |
33793-33802 |
JJ |
denotes |
olfactory |
T9628 |
33803-33811 |
NN |
denotes |
receptor |
T9629 |
33817-33818 |
. |
denotes |
. |
T9630 |
33818-34009 |
sentence |
denotes |
Locations of these regions in genomic sequence are difficult to predict - our study provides 5' UTR sequences of 343 genes and the approximate 3' UTR length for 399 olfactory receptor genes. |
T9631 |
33819-33828 |
NNS |
denotes |
Locations |
T9632 |
33866-33869 |
VBP |
denotes |
are |
T9633 |
33829-33831 |
IN |
denotes |
of |
T9634 |
33832-33837 |
DT |
denotes |
these |
T9635 |
33838-33845 |
NNS |
denotes |
regions |
T9636 |
33846-33848 |
IN |
denotes |
in |
T9637 |
33849-33856 |
JJ |
denotes |
genomic |
T9638 |
33857-33865 |
NN |
denotes |
sequence |
T9639 |
33903-33911 |
VBZ |
denotes |
provides |
T9640 |
33870-33879 |
JJ |
denotes |
difficult |
T9641 |
33880-33882 |
TO |
denotes |
to |
T9642 |
33883-33890 |
VB |
denotes |
predict |
T9643 |
33891-33892 |
: |
denotes |
- |
T9644 |
33893-33896 |
PRP$ |
denotes |
our |
T9645 |
33897-33902 |
NN |
denotes |
study |
T9646 |
33912-33913 |
CD |
denotes |
5 |
T9647 |
33915-33918 |
NN |
denotes |
UTR |
T9648 |
33913-33914 |
SYM |
denotes |
' |
T9649 |
33919-33928 |
NNS |
denotes |
sequences |
T9650 |
33929-33931 |
IN |
denotes |
of |
T9651 |
33932-33935 |
CD |
denotes |
343 |
T9652 |
33936-33941 |
NNS |
denotes |
genes |
T9653 |
33942-33945 |
CC |
denotes |
and |
T9654 |
33946-33949 |
DT |
denotes |
the |
T9655 |
33969-33975 |
NN |
denotes |
length |
T9656 |
33950-33961 |
JJ |
denotes |
approximate |
T9657 |
33962-33963 |
CD |
denotes |
3 |
T9658 |
33965-33968 |
NN |
denotes |
UTR |
T9659 |
33963-33964 |
SYM |
denotes |
' |
T9660 |
33976-33979 |
IN |
denotes |
for |
T9661 |
33980-33983 |
CD |
denotes |
399 |
T9662 |
34003-34008 |
NNS |
denotes |
genes |
T9663 |
33984-33993 |
JJ |
denotes |
olfactory |
T9664 |
33994-34002 |
NN |
denotes |
receptor |
T9665 |
34008-34009 |
. |
denotes |
. |
T9666 |
34009-34319 |
sentence |
denotes |
Probe design must also account for the multiple transcriptional isoforms observed for many olfactory receptors - depending on the question being asked, probes could be designed in shared sequence to determine the total level of all isoforms, or in unique exons to measure the level of each isoform separately. |
T9667 |
34010-34015 |
NN |
denotes |
Probe |
T9668 |
34016-34022 |
NN |
denotes |
design |
T9669 |
34033-34040 |
VB |
denotes |
account |
T9670 |
34023-34027 |
MD |
denotes |
must |
T9671 |
34028-34032 |
RB |
denotes |
also |
T9672 |
34178-34186 |
VBN |
denotes |
designed |
T9673 |
34041-34044 |
IN |
denotes |
for |
T9674 |
34045-34048 |
DT |
denotes |
the |
T9675 |
34074-34082 |
NNS |
denotes |
isoforms |
T9676 |
34049-34057 |
JJ |
denotes |
multiple |
T9677 |
34058-34073 |
JJ |
denotes |
transcriptional |
T9678 |
34083-34091 |
VBN |
denotes |
observed |
T9679 |
34092-34095 |
IN |
denotes |
for |
T9680 |
34096-34100 |
JJ |
denotes |
many |
T9681 |
34111-34120 |
NNS |
denotes |
receptors |
T9682 |
34101-34110 |
JJ |
denotes |
olfactory |
T9683 |
34121-34122 |
: |
denotes |
- |
T9684 |
34123-34132 |
VBG |
denotes |
depending |
T9685 |
34133-34135 |
IN |
denotes |
on |
T9686 |
34136-34139 |
DT |
denotes |
the |
T9687 |
34140-34148 |
NN |
denotes |
question |
T9688 |
34149-34154 |
VBG |
denotes |
being |
T9689 |
34155-34160 |
VBD |
denotes |
asked |
T9690 |
34160-34162 |
, |
denotes |
, |
T9691 |
34162-34168 |
NNS |
denotes |
probes |
T9692 |
34169-34174 |
MD |
denotes |
could |
T9693 |
34175-34177 |
VB |
denotes |
be |
T9694 |
34187-34189 |
IN |
denotes |
in |
T9695 |
34190-34196 |
VBN |
denotes |
shared |
T9696 |
34197-34205 |
NN |
denotes |
sequence |
T9697 |
34206-34208 |
TO |
denotes |
to |
T9698 |
34209-34218 |
VB |
denotes |
determine |
T9699 |
34219-34222 |
DT |
denotes |
the |
T9700 |
34229-34234 |
NN |
denotes |
level |
T9701 |
34223-34228 |
JJ |
denotes |
total |
T9702 |
34235-34237 |
IN |
denotes |
of |
T9703 |
34238-34241 |
DT |
denotes |
all |
T9704 |
34242-34250 |
NNS |
denotes |
isoforms |
T9705 |
34250-34252 |
, |
denotes |
, |
T9706 |
34252-34254 |
CC |
denotes |
or |
T9707 |
34255-34257 |
IN |
denotes |
in |
T9708 |
34258-34264 |
JJ |
denotes |
unique |
T9709 |
34265-34270 |
NNS |
denotes |
exons |
T9710 |
34271-34273 |
TO |
denotes |
to |
T9711 |
34274-34281 |
VB |
denotes |
measure |
T9712 |
34282-34285 |
DT |
denotes |
the |
T9713 |
34286-34291 |
NN |
denotes |
level |
T9714 |
34292-34294 |
IN |
denotes |
of |
T9715 |
34295-34299 |
DT |
denotes |
each |
T9716 |
34300-34307 |
NN |
denotes |
isoform |
T9717 |
34308-34318 |
RB |
denotes |
separately |
T9718 |
34318-34319 |
. |
denotes |
. |
T9719 |
34319-34557 |
sentence |
denotes |
We find that the majority of the olfactory receptors, like most non-olfactory receptor genes [38,39], are transcribed as multiple isoforms, involving alternative splicing of 5' untranslated exons and alternate polyadenylation-site usage. |
T9720 |
34320-34322 |
PRP |
denotes |
We |
T9721 |
34323-34327 |
VBP |
denotes |
find |
T9722 |
34328-34332 |
IN |
denotes |
that |
T9723 |
34426-34437 |
VBN |
denotes |
transcribed |
T9724 |
34333-34336 |
DT |
denotes |
the |
T9725 |
34337-34345 |
NN |
denotes |
majority |
T9726 |
34346-34348 |
IN |
denotes |
of |
T9727 |
34349-34352 |
DT |
denotes |
the |
T9728 |
34363-34372 |
NNS |
denotes |
receptors |
T9729 |
34353-34362 |
JJ |
denotes |
olfactory |
T9730 |
34372-34374 |
, |
denotes |
, |
T9731 |
34374-34378 |
IN |
denotes |
like |
T9732 |
34379-34383 |
JJS |
denotes |
most |
T9733 |
34407-34412 |
NNS |
denotes |
genes |
T9734 |
34384-34397 |
JJ |
denotes |
non-olfactory |
T9735 |
34398-34406 |
NN |
denotes |
receptor |
T9736 |
34413-34414 |
-LRB- |
denotes |
[ |
T9737 |
34417-34419 |
CD |
denotes |
39 |
T9738 |
34414-34416 |
CD |
denotes |
38 |
T9739 |
34416-34417 |
, |
denotes |
, |
T9740 |
34419-34420 |
-RRB- |
denotes |
] |
T9741 |
34420-34422 |
, |
denotes |
, |
T9742 |
34422-34425 |
VBP |
denotes |
are |
T9743 |
34438-34440 |
IN |
denotes |
as |
T9744 |
34441-34449 |
JJ |
denotes |
multiple |
T9745 |
34450-34458 |
NNS |
denotes |
isoforms |
T9746 |
34458-34460 |
, |
denotes |
, |
T9747 |
34460-34469 |
VBG |
denotes |
involving |
T9748 |
34470-34481 |
JJ |
denotes |
alternative |
T9749 |
34482-34490 |
NN |
denotes |
splicing |
T9750 |
34491-34493 |
IN |
denotes |
of |
T9751 |
34494-34495 |
CD |
denotes |
5 |
T9752 |
34510-34515 |
NNS |
denotes |
exons |
T9753 |
34495-34496 |
SYM |
denotes |
' |
T9754 |
34497-34509 |
JJ |
denotes |
untranslated |
T9755 |
34516-34519 |
CC |
denotes |
and |
T9756 |
34520-34529 |
JJ |
denotes |
alternate |
T9757 |
34551-34556 |
NN |
denotes |
usage |
T9758 |
34530-34545 |
NN |
denotes |
polyadenylation |
T9759 |
34546-34550 |
NN |
denotes |
site |
T9760 |
34545-34546 |
HYPH |
denotes |
- |
T9761 |
34556-34557 |
. |
denotes |
. |
T9762 |
34557-34732 |
sentence |
denotes |
The act of splicing itself may be important for efficient mRNA export from the nucleus [40] or to couple olfactory receptor coding regions with genomically distant promoters. |
T9763 |
34558-34561 |
DT |
denotes |
The |
T9764 |
34562-34565 |
NN |
denotes |
act |
T9765 |
34589-34591 |
VB |
denotes |
be |
T9766 |
34566-34568 |
IN |
denotes |
of |
T9767 |
34569-34577 |
VBG |
denotes |
splicing |
T9768 |
34578-34584 |
PRP |
denotes |
itself |
T9769 |
34585-34588 |
MD |
denotes |
may |
T9770 |
34592-34601 |
JJ |
denotes |
important |
T9771 |
34602-34605 |
IN |
denotes |
for |
T9772 |
34646-34648 |
CD |
denotes |
40 |
T9773 |
34606-34615 |
JJ |
denotes |
efficient |
T9774 |
34621-34627 |
NN |
denotes |
export |
T9775 |
34616-34620 |
NN |
denotes |
mRNA |
T9776 |
34628-34632 |
IN |
denotes |
from |
T9777 |
34633-34636 |
DT |
denotes |
the |
T9778 |
34637-34644 |
NN |
denotes |
nucleus |
T9779 |
34645-34646 |
-LRB- |
denotes |
[ |
T9780 |
34648-34649 |
-RRB- |
denotes |
] |
T9781 |
34650-34652 |
CC |
denotes |
or |
T9782 |
34653-34655 |
TO |
denotes |
to |
T9783 |
34656-34662 |
VB |
denotes |
couple |
T9784 |
34663-34672 |
JJ |
denotes |
olfactory |
T9785 |
34673-34681 |
NN |
denotes |
receptor |
T9786 |
34689-34696 |
NNS |
denotes |
regions |
T9787 |
34682-34688 |
NN |
denotes |
coding |
T9788 |
34697-34701 |
IN |
denotes |
with |
T9789 |
34702-34713 |
RB |
denotes |
genomically |
T9790 |
34714-34721 |
JJ |
denotes |
distant |
T9791 |
34722-34731 |
NNS |
denotes |
promoters |
T9792 |
34731-34732 |
. |
denotes |
. |
T9793 |
34732-34905 |
sentence |
denotes |
The exact nature of the spliced transcript might be unimportant, such that several isoforms might be produced simply because multiple functional splice sites are available. |
T9794 |
34733-34736 |
DT |
denotes |
The |
T9795 |
34743-34749 |
NN |
denotes |
nature |
T9796 |
34737-34742 |
JJ |
denotes |
exact |
T9797 |
34782-34784 |
VB |
denotes |
be |
T9798 |
34750-34752 |
IN |
denotes |
of |
T9799 |
34753-34756 |
DT |
denotes |
the |
T9800 |
34765-34775 |
NN |
denotes |
transcript |
T9801 |
34757-34764 |
VBN |
denotes |
spliced |
T9802 |
34776-34781 |
MD |
denotes |
might |
T9803 |
34785-34796 |
JJ |
denotes |
unimportant |
T9804 |
34796-34798 |
, |
denotes |
, |
T9805 |
34798-34802 |
JJ |
denotes |
such |
T9806 |
34834-34842 |
VBN |
denotes |
produced |
T9807 |
34803-34807 |
IN |
denotes |
that |
T9808 |
34808-34815 |
JJ |
denotes |
several |
T9809 |
34816-34824 |
NNS |
denotes |
isoforms |
T9810 |
34825-34830 |
MD |
denotes |
might |
T9811 |
34831-34833 |
VB |
denotes |
be |
T9812 |
34843-34849 |
RB |
denotes |
simply |
T9813 |
34891-34894 |
VBP |
denotes |
are |
T9814 |
34850-34857 |
IN |
denotes |
because |
T9815 |
34858-34866 |
JJ |
denotes |
multiple |
T9816 |
34885-34890 |
NNS |
denotes |
sites |
T9817 |
34867-34877 |
JJ |
denotes |
functional |
T9818 |
34878-34884 |
NN |
denotes |
splice |
T9819 |
34895-34904 |
JJ |
denotes |
available |
T9820 |
34904-34905 |
. |
denotes |
. |
T9821 |
34905-35094 |
sentence |
denotes |
Alternatively, the multiplicity of transcriptional isoforms might have functional significance, as UTRs may contain signals controlling mRNA stability, localization or degradation [41,42]. |
T9822 |
34906-34919 |
RB |
denotes |
Alternatively |
T9823 |
34972-34976 |
VB |
denotes |
have |
T9824 |
34919-34921 |
, |
denotes |
, |
T9825 |
34921-34924 |
DT |
denotes |
the |
T9826 |
34925-34937 |
NN |
denotes |
multiplicity |
T9827 |
34938-34940 |
IN |
denotes |
of |
T9828 |
34941-34956 |
JJ |
denotes |
transcriptional |
T9829 |
34957-34965 |
NNS |
denotes |
isoforms |
T9830 |
34966-34971 |
MD |
denotes |
might |
T9831 |
34977-34987 |
JJ |
denotes |
functional |
T9832 |
34988-35000 |
NN |
denotes |
significance |
T9833 |
35000-35002 |
, |
denotes |
, |
T9834 |
35002-35004 |
IN |
denotes |
as |
T9835 |
35014-35021 |
VB |
denotes |
contain |
T9836 |
35005-35009 |
NNS |
denotes |
UTRs |
T9837 |
35010-35013 |
MD |
denotes |
may |
T9838 |
35022-35029 |
NNS |
denotes |
signals |
T9839 |
35030-35041 |
VBG |
denotes |
controlling |
T9840 |
35042-35046 |
NN |
denotes |
mRNA |
T9841 |
35047-35056 |
NN |
denotes |
stability |
T9842 |
35056-35058 |
, |
denotes |
, |
T9843 |
35058-35070 |
NN |
denotes |
localization |
T9844 |
35071-35073 |
CC |
denotes |
or |
T9845 |
35074-35085 |
NN |
denotes |
degradation |
T9846 |
35086-35087 |
-LRB- |
denotes |
[ |
T9847 |
35090-35092 |
CD |
denotes |
42 |
T9848 |
35087-35089 |
CD |
denotes |
41 |
T9849 |
35089-35090 |
, |
denotes |
, |
T9850 |
35092-35093 |
-RRB- |
denotes |
] |
T9851 |
35093-35094 |
. |
denotes |
. |
T9852 |
35094-35226 |
sentence |
denotes |
Our study shows that about 5% of olfactory receptor transcripts do not fit the current notion of olfactory receptor gene structure. |
T9853 |
35095-35098 |
PRP$ |
denotes |
Our |
T9854 |
35099-35104 |
NN |
denotes |
study |
T9855 |
35105-35110 |
VBZ |
denotes |
shows |
T9856 |
35111-35115 |
IN |
denotes |
that |
T9857 |
35166-35169 |
VB |
denotes |
fit |
T9858 |
35116-35121 |
IN |
denotes |
about |
T9859 |
35122-35123 |
CD |
denotes |
5 |
T9860 |
35123-35124 |
NN |
denotes |
% |
T9861 |
35125-35127 |
IN |
denotes |
of |
T9862 |
35128-35137 |
JJ |
denotes |
olfactory |
T9863 |
35138-35146 |
NN |
denotes |
receptor |
T9864 |
35147-35158 |
NNS |
denotes |
transcripts |
T9865 |
35159-35161 |
VBP |
denotes |
do |
T9866 |
35162-35165 |
RB |
denotes |
not |
T9867 |
35170-35173 |
DT |
denotes |
the |
T9868 |
35182-35188 |
NN |
denotes |
notion |
T9869 |
35174-35181 |
JJ |
denotes |
current |
T9870 |
35189-35191 |
IN |
denotes |
of |
T9871 |
35192-35201 |
JJ |
denotes |
olfactory |
T9872 |
35202-35210 |
NN |
denotes |
receptor |
T9873 |
35211-35215 |
NN |
denotes |
gene |
T9874 |
35216-35225 |
NN |
denotes |
structure |
T9875 |
35225-35226 |
. |
denotes |
. |
T9876 |
35226-35296 |
sentence |
denotes |
Occasionally, an intron is spliced out of the 3' untranslated region. |
T9877 |
35227-35239 |
RB |
denotes |
Occasionally |
T9878 |
35254-35261 |
VBN |
denotes |
spliced |
T9879 |
35239-35241 |
, |
denotes |
, |
T9880 |
35241-35243 |
DT |
denotes |
an |
T9881 |
35244-35250 |
NN |
denotes |
intron |
T9882 |
35251-35253 |
VBZ |
denotes |
is |
T9883 |
35262-35265 |
IN |
denotes |
out |
T9884 |
35266-35268 |
IN |
denotes |
of |
T9885 |
35269-35272 |
DT |
denotes |
the |
T9886 |
35289-35295 |
NN |
denotes |
region |
T9887 |
35273-35274 |
CD |
denotes |
3 |
T9888 |
35274-35275 |
SYM |
denotes |
' |
T9889 |
35276-35288 |
JJ |
denotes |
untranslated |
T9890 |
35295-35296 |
. |
denotes |
. |
T9891 |
35296-35476 |
sentence |
denotes |
A number of cDNAs use splice sites within the olfactory receptor's ORF, meaning that their protein product is different from that predicted on the basis of genomic sequence alone. |
T9892 |
35297-35298 |
DT |
denotes |
A |
T9893 |
35299-35305 |
NN |
denotes |
number |
T9894 |
35315-35318 |
VBP |
denotes |
use |
T9895 |
35306-35308 |
IN |
denotes |
of |
T9896 |
35309-35314 |
NNS |
denotes |
cDNAs |
T9897 |
35319-35325 |
NN |
denotes |
splice |
T9898 |
35326-35331 |
NNS |
denotes |
sites |
T9899 |
35332-35338 |
IN |
denotes |
within |
T9900 |
35339-35342 |
DT |
denotes |
the |
T9901 |
35353-35361 |
NN |
denotes |
receptor |
T9902 |
35343-35352 |
JJ |
denotes |
olfactory |
T9903 |
35364-35367 |
NN |
denotes |
ORF |
T9904 |
35361-35363 |
POS |
denotes |
's |
T9905 |
35367-35369 |
, |
denotes |
, |
T9906 |
35369-35376 |
VBG |
denotes |
meaning |
T9907 |
35377-35381 |
IN |
denotes |
that |
T9908 |
35404-35406 |
VBZ |
denotes |
is |
T9909 |
35382-35387 |
PRP$ |
denotes |
their |
T9910 |
35396-35403 |
NN |
denotes |
product |
T9911 |
35388-35395 |
NN |
denotes |
protein |
T9912 |
35407-35416 |
JJ |
denotes |
different |
T9913 |
35417-35421 |
IN |
denotes |
from |
T9914 |
35422-35426 |
DT |
denotes |
that |
T9915 |
35427-35436 |
VBN |
denotes |
predicted |
T9916 |
35437-35439 |
IN |
denotes |
on |
T9917 |
35440-35443 |
DT |
denotes |
the |
T9918 |
35444-35449 |
NN |
denotes |
basis |
T9919 |
35450-35452 |
IN |
denotes |
of |
T9920 |
35453-35460 |
JJ |
denotes |
genomic |
T9921 |
35461-35469 |
NN |
denotes |
sequence |
T9922 |
35470-35475 |
RB |
denotes |
alone |
T9923 |
35475-35476 |
. |
denotes |
. |
T9924 |
35476-35729 |
sentence |
denotes |
In two such cases, the transcript would encode a functional olfactory receptor, with the initiating methionine and first few amino acids encoded by an upstream exon, as has been observed previously for a subtelomeric human olfactory receptor gene [25]. |
T9925 |
35477-35479 |
IN |
denotes |
In |
T9926 |
35517-35523 |
VB |
denotes |
encode |
T9927 |
35480-35483 |
CD |
denotes |
two |
T9928 |
35489-35494 |
NNS |
denotes |
cases |
T9929 |
35484-35488 |
JJ |
denotes |
such |
T9930 |
35494-35496 |
, |
denotes |
, |
T9931 |
35496-35499 |
DT |
denotes |
the |
T9932 |
35500-35510 |
NN |
denotes |
transcript |
T9933 |
35511-35516 |
MD |
denotes |
would |
T9934 |
35524-35525 |
DT |
denotes |
a |
T9935 |
35547-35555 |
NN |
denotes |
receptor |
T9936 |
35526-35536 |
JJ |
denotes |
functional |
T9937 |
35537-35546 |
JJ |
denotes |
olfactory |
T9938 |
35555-35557 |
, |
denotes |
, |
T9939 |
35557-35561 |
IN |
denotes |
with |
T9940 |
35614-35621 |
VBN |
denotes |
encoded |
T9941 |
35562-35565 |
DT |
denotes |
the |
T9942 |
35577-35587 |
NN |
denotes |
methionine |
T9943 |
35566-35576 |
VBG |
denotes |
initiating |
T9944 |
35588-35591 |
CC |
denotes |
and |
T9945 |
35592-35597 |
JJ |
denotes |
first |
T9946 |
35608-35613 |
NNS |
denotes |
acids |
T9947 |
35598-35601 |
JJ |
denotes |
few |
T9948 |
35602-35607 |
NN |
denotes |
amino |
T9949 |
35622-35624 |
IN |
denotes |
by |
T9950 |
35625-35627 |
DT |
denotes |
an |
T9951 |
35637-35641 |
NN |
denotes |
exon |
T9952 |
35628-35636 |
JJ |
denotes |
upstream |
T9953 |
35641-35643 |
, |
denotes |
, |
T9954 |
35643-35645 |
IN |
denotes |
as |
T9955 |
35655-35663 |
VBN |
denotes |
observed |
T9956 |
35646-35649 |
VBZ |
denotes |
has |
T9957 |
35650-35654 |
VBN |
denotes |
been |
T9958 |
35664-35674 |
RB |
denotes |
previously |
T9959 |
35675-35678 |
IN |
denotes |
for |
T9960 |
35679-35680 |
DT |
denotes |
a |
T9961 |
35719-35723 |
NN |
denotes |
gene |
T9962 |
35681-35693 |
JJ |
denotes |
subtelomeric |
T9963 |
35694-35699 |
JJ |
denotes |
human |
T9964 |
35700-35709 |
JJ |
denotes |
olfactory |
T9965 |
35710-35718 |
NN |
denotes |
receptor |
T9966 |
35724-35725 |
-LRB- |
denotes |
[ |
T9967 |
35725-35727 |
CD |
denotes |
25 |
T9968 |
35727-35728 |
-RRB- |
denotes |
] |
T9969 |
35728-35729 |
. |
denotes |
. |
T9970 |
35729-35928 |
sentence |
denotes |
Such within-ORF splicing might increase protein-coding diversity, although, given the small number of genes involved, splicing is unlikely to significantly affect the functional receptor repertoire. |
T9971 |
35730-35734 |
JJ |
denotes |
Such |
T9972 |
35746-35754 |
NN |
denotes |
splicing |
T9973 |
35735-35741 |
IN |
denotes |
within |
T9974 |
35741-35742 |
HYPH |
denotes |
- |
T9975 |
35742-35745 |
NN |
denotes |
ORF |
T9976 |
35761-35769 |
VB |
denotes |
increase |
T9977 |
35755-35760 |
MD |
denotes |
might |
T9978 |
35770-35777 |
NN |
denotes |
protein |
T9979 |
35778-35784 |
VBG |
denotes |
coding |
T9980 |
35777-35778 |
HYPH |
denotes |
- |
T9981 |
35785-35794 |
NN |
denotes |
diversity |
T9982 |
35794-35796 |
, |
denotes |
, |
T9983 |
35796-35804 |
IN |
denotes |
although |
T9984 |
35857-35859 |
VBZ |
denotes |
is |
T9985 |
35804-35806 |
, |
denotes |
, |
T9986 |
35806-35811 |
VBN |
denotes |
given |
T9987 |
35812-35815 |
DT |
denotes |
the |
T9988 |
35822-35828 |
NN |
denotes |
number |
T9989 |
35816-35821 |
JJ |
denotes |
small |
T9990 |
35829-35831 |
IN |
denotes |
of |
T9991 |
35832-35837 |
NNS |
denotes |
genes |
T9992 |
35838-35846 |
VBN |
denotes |
involved |
T9993 |
35846-35848 |
, |
denotes |
, |
T9994 |
35848-35856 |
NN |
denotes |
splicing |
T9995 |
35860-35868 |
JJ |
denotes |
unlikely |
T9996 |
35869-35871 |
TO |
denotes |
to |
T9997 |
35886-35892 |
VB |
denotes |
affect |
T9998 |
35872-35885 |
RB |
denotes |
significantly |
T9999 |
35893-35896 |
DT |
denotes |
the |
T10000 |
35917-35927 |
NN |
denotes |
repertoire |
T10001 |
35897-35907 |
JJ |
denotes |
functional |
T10002 |
35908-35916 |
NN |
denotes |
receptor |
T10003 |
35927-35928 |
. |
denotes |
. |
T10004 |
35928-36147 |
sentence |
denotes |
Most of the atypical splice forms we observe appear to encode non-functional transcripts, containing frameshifts or lacking a start codon or other functional residues conserved throughout the olfactory receptor family. |
T10005 |
35929-35933 |
JJS |
denotes |
Most |
T10006 |
35974-35980 |
VBP |
denotes |
appear |
T10007 |
35934-35936 |
IN |
denotes |
of |
T10008 |
35937-35940 |
DT |
denotes |
the |
T10009 |
35957-35962 |
NNS |
denotes |
forms |
T10010 |
35941-35949 |
JJ |
denotes |
atypical |
T10011 |
35950-35956 |
NN |
denotes |
splice |
T10012 |
35963-35965 |
PRP |
denotes |
we |
T10013 |
35966-35973 |
VBP |
denotes |
observe |
T10014 |
35981-35983 |
TO |
denotes |
to |
T10015 |
35984-35990 |
VB |
denotes |
encode |
T10016 |
35991-36005 |
JJ |
denotes |
non-functional |
T10017 |
36006-36017 |
NNS |
denotes |
transcripts |
T10018 |
36017-36019 |
, |
denotes |
, |
T10019 |
36019-36029 |
VBG |
denotes |
containing |
T10020 |
36030-36041 |
NNS |
denotes |
frameshifts |
T10021 |
36042-36044 |
CC |
denotes |
or |
T10022 |
36045-36052 |
VBG |
denotes |
lacking |
T10023 |
36053-36054 |
DT |
denotes |
a |
T10024 |
36061-36066 |
NN |
denotes |
codon |
T10025 |
36055-36060 |
NN |
denotes |
start |
T10026 |
36067-36069 |
CC |
denotes |
or |
T10027 |
36070-36075 |
JJ |
denotes |
other |
T10028 |
36087-36095 |
NNS |
denotes |
residues |
T10029 |
36076-36086 |
JJ |
denotes |
functional |
T10030 |
36096-36105 |
VBN |
denotes |
conserved |
T10031 |
36106-36116 |
IN |
denotes |
throughout |
T10032 |
36117-36120 |
DT |
denotes |
the |
T10033 |
36140-36146 |
NN |
denotes |
family |
T10034 |
36121-36130 |
JJ |
denotes |
olfactory |
T10035 |
36131-36139 |
NN |
denotes |
receptor |
T10036 |
36146-36147 |
. |
denotes |
. |
T10037 |
36147-36310 |
sentence |
denotes |
These nonfunctional transcripts are probably aberrant by-products of the splicing system [43] that have not yet been degraded by RNA surveillance systems [40,41]. |
T10038 |
36148-36153 |
DT |
denotes |
These |
T10039 |
36168-36179 |
NNS |
denotes |
transcripts |
T10040 |
36154-36167 |
JJ |
denotes |
nonfunctional |
T10041 |
36180-36183 |
VBP |
denotes |
are |
T10042 |
36184-36192 |
RB |
denotes |
probably |
T10043 |
36193-36201 |
JJ |
denotes |
aberrant |
T10044 |
36205-36213 |
NNS |
denotes |
products |
T10045 |
36202-36204 |
NN |
denotes |
by |
T10046 |
36204-36205 |
HYPH |
denotes |
- |
T10047 |
36214-36216 |
IN |
denotes |
of |
T10048 |
36217-36220 |
DT |
denotes |
the |
T10049 |
36230-36236 |
NN |
denotes |
system |
T10050 |
36221-36229 |
NN |
denotes |
splicing |
T10051 |
36237-36238 |
-LRB- |
denotes |
[ |
T10052 |
36238-36240 |
CD |
denotes |
43 |
T10053 |
36240-36241 |
-RRB- |
denotes |
] |
T10054 |
36242-36246 |
WDT |
denotes |
that |
T10055 |
36265-36273 |
VBN |
denotes |
degraded |
T10056 |
36247-36251 |
VBP |
denotes |
have |
T10057 |
36252-36255 |
RB |
denotes |
not |
T10058 |
36256-36259 |
RB |
denotes |
yet |
T10059 |
36260-36264 |
VBN |
denotes |
been |
T10060 |
36274-36276 |
IN |
denotes |
by |
T10061 |
36277-36280 |
NN |
denotes |
RNA |
T10062 |
36294-36301 |
NNS |
denotes |
systems |
T10063 |
36281-36293 |
NN |
denotes |
surveillance |
T10064 |
36302-36303 |
-LRB- |
denotes |
[ |
T10065 |
36306-36308 |
CD |
denotes |
41 |
T10066 |
36303-36305 |
CD |
denotes |
40 |
T10067 |
36305-36306 |
, |
denotes |
, |
T10068 |
36308-36309 |
-RRB- |
denotes |
] |
T10069 |
36309-36310 |
. |
denotes |
. |
T10070 |
36310-36464 |
sentence |
denotes |
The neurons expressing these aberrant transcripts might also make normal transcripts for the same genes and thus produce a functional olfactory receptor. |
T10071 |
36311-36314 |
DT |
denotes |
The |
T10072 |
36315-36322 |
NNS |
denotes |
neurons |
T10073 |
36372-36376 |
VB |
denotes |
make |
T10074 |
36323-36333 |
VBG |
denotes |
expressing |
T10075 |
36334-36339 |
DT |
denotes |
these |
T10076 |
36349-36360 |
NNS |
denotes |
transcripts |
T10077 |
36340-36348 |
JJ |
denotes |
aberrant |
T10078 |
36361-36366 |
MD |
denotes |
might |
T10079 |
36367-36371 |
RB |
denotes |
also |
T10080 |
36377-36383 |
JJ |
denotes |
normal |
T10081 |
36384-36395 |
NNS |
denotes |
transcripts |
T10082 |
36396-36399 |
IN |
denotes |
for |
T10083 |
36400-36403 |
DT |
denotes |
the |
T10084 |
36409-36414 |
NNS |
denotes |
genes |
T10085 |
36404-36408 |
JJ |
denotes |
same |
T10086 |
36415-36418 |
CC |
denotes |
and |
T10087 |
36419-36423 |
RB |
denotes |
thus |
T10088 |
36424-36431 |
VB |
denotes |
produce |
T10089 |
36432-36433 |
DT |
denotes |
a |
T10090 |
36455-36463 |
NN |
denotes |
receptor |
T10091 |
36434-36444 |
JJ |
denotes |
functional |
T10092 |
36445-36454 |
JJ |
denotes |
olfactory |
T10093 |
36463-36464 |
. |
denotes |
. |
T10094 |
36464-36753 |
sentence |
denotes |
Alternatively, the unusual transcriptional regulation of olfactory receptors might ensure that only one splice isoform is expressed per cell (unlikely, but possible if an RNA-based feedback mechanism operates), thus condemning cells expressing these aberrant isoforms to be dysfunctional. |
T10095 |
36465-36478 |
RB |
denotes |
Alternatively |
T10096 |
36548-36554 |
VB |
denotes |
ensure |
T10097 |
36478-36480 |
, |
denotes |
, |
T10098 |
36480-36483 |
DT |
denotes |
the |
T10099 |
36508-36518 |
NN |
denotes |
regulation |
T10100 |
36484-36491 |
JJ |
denotes |
unusual |
T10101 |
36492-36507 |
JJ |
denotes |
transcriptional |
T10102 |
36519-36521 |
IN |
denotes |
of |
T10103 |
36522-36531 |
JJ |
denotes |
olfactory |
T10104 |
36532-36541 |
NNS |
denotes |
receptors |
T10105 |
36542-36547 |
MD |
denotes |
might |
T10106 |
36555-36559 |
IN |
denotes |
that |
T10107 |
36587-36596 |
VBN |
denotes |
expressed |
T10108 |
36560-36564 |
RB |
denotes |
only |
T10109 |
36576-36583 |
NN |
denotes |
isoform |
T10110 |
36565-36568 |
CD |
denotes |
one |
T10187 |
37013-37020 |
NNS |
denotes |
neurons |
T10111 |
36569-36575 |
NN |
denotes |
splice |
T10112 |
36584-36586 |
VBZ |
denotes |
is |
T10113 |
36597-36600 |
IN |
denotes |
per |
T10114 |
36601-36605 |
NN |
denotes |
cell |
T10115 |
36606-36607 |
-LRB- |
denotes |
( |
T10116 |
36607-36615 |
JJ |
denotes |
unlikely |
T10117 |
36615-36617 |
, |
denotes |
, |
T10118 |
36617-36620 |
CC |
denotes |
but |
T10119 |
36621-36629 |
JJ |
denotes |
possible |
T10120 |
36630-36632 |
IN |
denotes |
if |
T10121 |
36665-36673 |
VBZ |
denotes |
operates |
T10122 |
36633-36635 |
DT |
denotes |
an |
T10123 |
36655-36664 |
NN |
denotes |
mechanism |
T10124 |
36636-36639 |
NN |
denotes |
RNA |
T10125 |
36640-36645 |
VBN |
denotes |
based |
T10126 |
36639-36640 |
HYPH |
denotes |
- |
T10127 |
36646-36654 |
NN |
denotes |
feedback |
T10128 |
36673-36674 |
-RRB- |
denotes |
) |
T10129 |
36674-36676 |
, |
denotes |
, |
T10130 |
36676-36680 |
RB |
denotes |
thus |
T10131 |
36681-36691 |
VBG |
denotes |
condemning |
T10132 |
36692-36697 |
NNS |
denotes |
cells |
T10133 |
36736-36738 |
VB |
denotes |
be |
T10134 |
36698-36708 |
VBG |
denotes |
expressing |
T10135 |
36709-36714 |
DT |
denotes |
these |
T10136 |
36724-36732 |
NNS |
denotes |
isoforms |
T10137 |
36715-36723 |
JJ |
denotes |
aberrant |
T10138 |
36733-36735 |
TO |
denotes |
to |
T10139 |
36739-36752 |
JJ |
denotes |
dysfunctional |
T10140 |
36752-36753 |
. |
denotes |
. |
T10141 |
36753-36916 |
sentence |
denotes |
We also observe transcripts from a small number of olfactory receptor pseudogenes, as previously described for three human olfactory receptor pseudogenes [26,44]. |
T10142 |
36754-36756 |
PRP |
denotes |
We |
T10143 |
36762-36769 |
VBP |
denotes |
observe |
T10144 |
36757-36761 |
RB |
denotes |
also |
T10145 |
36770-36781 |
NNS |
denotes |
transcripts |
T10146 |
36782-36786 |
IN |
denotes |
from |
T10147 |
36787-36788 |
DT |
denotes |
a |
T10148 |
36795-36801 |
NN |
denotes |
number |
T10149 |
36789-36794 |
JJ |
denotes |
small |
T10150 |
36802-36804 |
IN |
denotes |
of |
T10151 |
36805-36814 |
JJ |
denotes |
olfactory |
T10152 |
36815-36823 |
NN |
denotes |
receptor |
T10153 |
36824-36835 |
NNS |
denotes |
pseudogenes |
T10154 |
36835-36837 |
, |
denotes |
, |
T10155 |
36837-36839 |
IN |
denotes |
as |
T10156 |
36851-36860 |
VBN |
denotes |
described |
T10157 |
36840-36850 |
RB |
denotes |
previously |
T10158 |
36861-36864 |
IN |
denotes |
for |
T10159 |
36865-36870 |
CD |
denotes |
three |
T10160 |
36896-36907 |
NNS |
denotes |
pseudogenes |
T10161 |
36871-36876 |
JJ |
denotes |
human |
T10162 |
36877-36886 |
JJ |
denotes |
olfactory |
T10163 |
36887-36895 |
NN |
denotes |
receptor |
T10164 |
36908-36909 |
-LRB- |
denotes |
[ |
T10165 |
36912-36914 |
CD |
denotes |
44 |
T10166 |
36909-36911 |
CD |
denotes |
26 |
T10167 |
36911-36912 |
, |
denotes |
, |
T10168 |
36914-36915 |
-RRB- |
denotes |
] |
T10169 |
36915-36916 |
. |
denotes |
. |
T10170 |
36916-37190 |
sentence |
denotes |
Although many fewer pseudogenes than intact genes were represented in our cDNA collection, some neurons in the olfactory epithelium evidently express disrupted olfactory receptors and thus might be unable to respond to odorants or to correctly innervate the olfactory bulb. |
T10171 |
36917-36925 |
IN |
denotes |
Although |
T10172 |
36972-36983 |
VBN |
denotes |
represented |
T10173 |
36926-36930 |
JJ |
denotes |
many |
T10174 |
36931-36936 |
JJR |
denotes |
fewer |
T10175 |
36937-36948 |
NNS |
denotes |
pseudogenes |
T10176 |
36949-36953 |
IN |
denotes |
than |
T10177 |
36954-36960 |
JJ |
denotes |
intact |
T10178 |
36961-36966 |
NNS |
denotes |
genes |
T10179 |
36967-36971 |
VBD |
denotes |
were |
T10180 |
37059-37066 |
VBP |
denotes |
express |
T10181 |
36984-36986 |
IN |
denotes |
in |
T10182 |
36987-36990 |
PRP$ |
denotes |
our |
T10183 |
36996-37006 |
NN |
denotes |
collection |
T10184 |
36991-36995 |
NN |
denotes |
cDNA |
T10185 |
37006-37008 |
, |
denotes |
, |
T10186 |
37008-37012 |
DT |
denotes |
some |
T10188 |
37021-37023 |
IN |
denotes |
in |
T10189 |
37024-37027 |
DT |
denotes |
the |
T10190 |
37038-37048 |
NN |
denotes |
epithelium |
T10191 |
37028-37037 |
JJ |
denotes |
olfactory |
T10192 |
37049-37058 |
RB |
denotes |
evidently |
T10193 |
37067-37076 |
JJ |
denotes |
disrupted |
T10194 |
37087-37096 |
NNS |
denotes |
receptors |
T10195 |
37077-37086 |
JJ |
denotes |
olfactory |
T10196 |
37097-37100 |
CC |
denotes |
and |
T10197 |
37101-37105 |
RB |
denotes |
thus |
T10198 |
37112-37114 |
VB |
denotes |
be |
T10199 |
37106-37111 |
MD |
denotes |
might |
T10200 |
37115-37121 |
JJ |
denotes |
unable |
T10201 |
37122-37124 |
TO |
denotes |
to |
T10202 |
37125-37132 |
VB |
denotes |
respond |
T10203 |
37133-37135 |
IN |
denotes |
to |
T10204 |
37136-37144 |
NNS |
denotes |
odorants |
T10205 |
37145-37147 |
CC |
denotes |
or |
T10206 |
37148-37150 |
TO |
denotes |
to |
T10207 |
37161-37170 |
VB |
denotes |
innervate |
T10208 |
37151-37160 |
RB |
denotes |
correctly |
T10209 |
37171-37174 |
DT |
denotes |
the |
T10210 |
37185-37189 |
NN |
denotes |
bulb |
T10211 |
37175-37184 |
JJ |
denotes |
olfactory |
T10212 |
37189-37190 |
. |
denotes |
. |
T10213 |
37190-37462 |
sentence |
denotes |
Wang, Axel and coworkers have shown that an artificial transgenic olfactory receptor gene containing two nonsense mutations can support development of an olfactory neuron, but that pseudogene-expressing neurons fail to converge on a glomerulus in the olfactory bulb [45]. |
T10214 |
37191-37195 |
NNP |
denotes |
Wang |
T10215 |
37221-37226 |
VBN |
denotes |
shown |
T10216 |
37195-37197 |
, |
denotes |
, |
T10217 |
37197-37201 |
NNP |
denotes |
Axel |
T10218 |
37202-37205 |
CC |
denotes |
and |
T10219 |
37206-37215 |
NNS |
denotes |
coworkers |
T10220 |
37216-37220 |
VBP |
denotes |
have |
T10221 |
37227-37231 |
IN |
denotes |
that |
T10222 |
37319-37326 |
VB |
denotes |
support |
T10223 |
37232-37234 |
DT |
denotes |
an |
T10224 |
37276-37280 |
NN |
denotes |
gene |
T10225 |
37235-37245 |
JJ |
denotes |
artificial |
T10226 |
37246-37256 |
JJ |
denotes |
transgenic |
T10227 |
37257-37266 |
JJ |
denotes |
olfactory |
T10228 |
37267-37275 |
NN |
denotes |
receptor |
T10229 |
37281-37291 |
VBG |
denotes |
containing |
T10230 |
37292-37295 |
CD |
denotes |
two |
T10231 |
37305-37314 |
NNS |
denotes |
mutations |
T10232 |
37296-37304 |
JJ |
denotes |
nonsense |
T10233 |
37315-37318 |
MD |
denotes |
can |
T10234 |
37327-37338 |
NN |
denotes |
development |
T10235 |
37339-37341 |
IN |
denotes |
of |
T10236 |
37342-37344 |
DT |
denotes |
an |
T10237 |
37355-37361 |
NN |
denotes |
neuron |
T10238 |
37345-37354 |
JJ |
denotes |
olfactory |
T10239 |
37361-37363 |
, |
denotes |
, |
T10240 |
37363-37366 |
CC |
denotes |
but |
T10241 |
37367-37371 |
IN |
denotes |
that |
T10242 |
37402-37406 |
VBP |
denotes |
fail |
T10243 |
37372-37382 |
NN |
denotes |
pseudogene |
T10244 |
37383-37393 |
VBG |
denotes |
expressing |
T10245 |
37382-37383 |
HYPH |
denotes |
- |
T10246 |
37394-37401 |
NNS |
denotes |
neurons |
T10247 |
37407-37409 |
TO |
denotes |
to |
T10248 |
37410-37418 |
VB |
denotes |
converge |
T10249 |
37419-37421 |
IN |
denotes |
on |
T10250 |
37422-37423 |
DT |
denotes |
a |
T10251 |
37424-37434 |
NN |
denotes |
glomerulus |
T10252 |
37435-37437 |
IN |
denotes |
in |
T10253 |
37438-37441 |
DT |
denotes |
the |
T10254 |
37452-37456 |
NN |
denotes |
bulb |
T10255 |
37442-37451 |
JJ |
denotes |
olfactory |
T10256 |
37457-37458 |
-LRB- |
denotes |
[ |
T10257 |
37458-37460 |
CD |
denotes |
45 |
T10258 |
37460-37461 |
-RRB- |
denotes |
] |
T10259 |
37461-37462 |
. |
denotes |
. |
T10260 |
37462-37797 |
sentence |
denotes |
By analogy with an olfactory receptor deletion mutant [45], it is likely that most pseudogene-expressing neurons die or switch to express a different olfactory receptor gene, leaving a small number of pseudogene-expressing neurons in adult mice, but at greatly reduced levels compared to neurons expressing intact olfactory receptors. |
T10261 |
37463-37465 |
IN |
denotes |
By |
T10262 |
37526-37528 |
VBZ |
denotes |
is |
T10263 |
37466-37473 |
NN |
denotes |
analogy |
T10264 |
37474-37478 |
IN |
denotes |
with |
T10265 |
37479-37481 |
DT |
denotes |
an |
T10316 |
37787-37796 |
NNS |
denotes |
receptors |
T10317 |
37777-37786 |
JJ |
denotes |
olfactory |
T10318 |
37796-37797 |
. |
denotes |
. |
T10429 |
37936-38035 |
sentence |
denotes |
We have thus established over 400 annotated olfactory receptor genes as having olfactory function. |
T10430 |
37937-37939 |
PRP |
denotes |
We |
T10431 |
37950-37961 |
VBN |
denotes |
established |
T10432 |
37940-37944 |
VBP |
denotes |
have |
T10433 |
37945-37949 |
RB |
denotes |
thus |
T10434 |
37962-37966 |
IN |
denotes |
over |
T10435 |
37967-37970 |
CD |
denotes |
400 |
T10436 |
38000-38005 |
NNS |
denotes |
genes |
T10437 |
37971-37980 |
JJ |
denotes |
annotated |
T10438 |
37981-37990 |
JJ |
denotes |
olfactory |
T10439 |
37991-37999 |
NN |
denotes |
receptor |
T10440 |
38006-38008 |
IN |
denotes |
as |
T10441 |
38009-38015 |
VBG |
denotes |
having |
T10442 |
38016-38025 |
JJ |
denotes |
olfactory |
T10443 |
38026-38034 |
NN |
denotes |
function |
T10444 |
38034-38035 |
. |
denotes |
. |
T10445 |
38035-38169 |
sentence |
denotes |
The sequences we generated demonstrate that the majority of the olfactory receptor gene family has multiple transcriptional isoforms. |
T10446 |
38036-38039 |
DT |
denotes |
The |
T10447 |
38040-38049 |
NNS |
denotes |
sequences |
T10448 |
38063-38074 |
VBP |
denotes |
demonstrate |
T10449 |
38050-38052 |
PRP |
denotes |
we |
T10450 |
38053-38062 |
VBD |
denotes |
generated |
T10451 |
38075-38079 |
IN |
denotes |
that |
T10452 |
38131-38134 |
VBZ |
denotes |
has |
T10453 |
38080-38083 |
DT |
denotes |
the |
T10454 |
38084-38092 |
NN |
denotes |
majority |
T10455 |
38093-38095 |
IN |
denotes |
of |
T10456 |
38096-38099 |
DT |
denotes |
the |
T10457 |
38124-38130 |
NN |
denotes |
family |
T10458 |
38100-38109 |
JJ |
denotes |
olfactory |
T10459 |
38110-38118 |
NN |
denotes |
receptor |
T10460 |
38119-38123 |
NN |
denotes |
gene |
T10461 |
38135-38143 |
JJ |
denotes |
multiple |
T10462 |
38160-38168 |
NNS |
denotes |
isoforms |
T10463 |
38144-38159 |
JJ |
denotes |
transcriptional |
T10464 |
38168-38169 |
. |
denotes |
. |
T10465 |
38169-38264 |
sentence |
denotes |
Most olfactory receptor transcripts encode functional receptor proteins, with rare exceptions. |
T10466 |
38170-38174 |
RBS |
denotes |
Most |
T10467 |
38194-38205 |
NNS |
denotes |
transcripts |
T10468 |
38175-38184 |
JJ |
denotes |
olfactory |
T10469 |
38185-38193 |
NN |
denotes |
receptor |
T10470 |
38206-38212 |
VBP |
denotes |
encode |
T10471 |
38213-38223 |
JJ |
denotes |
functional |
T10472 |
38233-38241 |
NN |
denotes |
proteins |
T10473 |
38224-38232 |
NN |
denotes |
receptor |
T10474 |
38241-38243 |
, |
denotes |
, |
T10475 |
38243-38247 |
IN |
denotes |
with |
T10476 |
38248-38252 |
JJ |
denotes |
rare |
T10477 |
38253-38263 |
NNS |
denotes |
exceptions |
T10478 |
38263-38264 |
. |
denotes |
. |
T10479 |
38264-38476 |
sentence |
denotes |
We show that individual olfactory receptor genes can have vastly different expression levels, an intriguing finding in light of the unusual one-neuron one-gene transcriptional regime of the olfactory epithelium. |
T10480 |
38265-38267 |
PRP |
denotes |
We |
T10481 |
38268-38272 |
VBP |
denotes |
show |
T10482 |
38273-38277 |
IN |
denotes |
that |
T10483 |
38318-38322 |
VB |
denotes |
have |
T10484 |
38278-38288 |
JJ |
denotes |
individual |
T10485 |
38308-38313 |
NNS |
denotes |
genes |
T10486 |
38289-38298 |
JJ |
denotes |
olfactory |
T10487 |
38299-38307 |
NN |
denotes |
receptor |
T10488 |
38314-38317 |
MD |
denotes |
can |
T10489 |
38323-38329 |
RB |
denotes |
vastly |
T10490 |
38330-38339 |
JJ |
denotes |
different |
T10491 |
38351-38357 |
NNS |
denotes |
levels |
T10492 |
38340-38350 |
NN |
denotes |
expression |
T10493 |
38357-38359 |
, |
denotes |
, |
T10494 |
38359-38361 |
DT |
denotes |
an |
T10495 |
38373-38380 |
NN |
denotes |
finding |
T10496 |
38362-38372 |
JJ |
denotes |
intriguing |
T10497 |
38381-38383 |
IN |
denotes |
in |
T10498 |
38384-38389 |
NN |
denotes |
light |
T10499 |
38390-38392 |
IN |
denotes |
of |
T10500 |
38393-38396 |
DT |
denotes |
the |
T10501 |
38441-38447 |
NN |
denotes |
regime |
T10502 |
38397-38404 |
JJ |
denotes |
unusual |
T10503 |
38405-38408 |
CD |
denotes |
one |
T10504 |
38409-38415 |
NN |
denotes |
neuron |
T10505 |
38408-38409 |
HYPH |
denotes |
- |
T10506 |
38416-38419 |
CD |
denotes |
one |
T10507 |
38420-38424 |
NN |
denotes |
gene |
T10508 |
38419-38420 |
HYPH |
denotes |
- |
T10509 |
38425-38440 |
JJ |
denotes |
transcriptional |
T10510 |
38448-38450 |
IN |
denotes |
of |
T10511 |
38451-38454 |
DT |
denotes |
the |
T10512 |
38465-38475 |
NN |
denotes |
epithelium |
T10513 |
38455-38464 |
JJ |
denotes |
olfactory |
T10514 |
38475-38476 |
. |
denotes |
. |
T10515 |
38476-38625 |
sentence |
denotes |
Our results and the sequences we provide will facilitate future global studies of the mechanisms and dynamics of olfactory receptor gene expression. |
T10516 |
38477-38480 |
PRP$ |
denotes |
Our |
T10517 |
38481-38488 |
NNS |
denotes |
results |
T10518 |
38523-38533 |
VB |
denotes |
facilitate |
T10519 |
38489-38492 |
CC |
denotes |
and |
T10520 |
38493-38496 |
DT |
denotes |
the |
T10521 |
38497-38506 |
NNS |
denotes |
sequences |
T10522 |
38507-38509 |
PRP |
denotes |
we |
T10523 |
38510-38517 |
VBP |
denotes |
provide |
T10524 |
38518-38522 |
MD |
denotes |
will |
T10525 |
38534-38540 |
JJ |
denotes |
future |
T10526 |
38548-38555 |
NNS |
denotes |
studies |
T10527 |
38541-38547 |
JJ |
denotes |
global |
T10528 |
38556-38558 |
IN |
denotes |
of |
T10529 |
38559-38562 |
DT |
denotes |
the |
T10530 |
38563-38573 |
NNS |
denotes |
mechanisms |
T10531 |
38574-38577 |
CC |
denotes |
and |
T10532 |
38578-38586 |
NNS |
denotes |
dynamics |
T10533 |
38587-38589 |
IN |
denotes |
of |
T10534 |
38590-38599 |
JJ |
denotes |
olfactory |
T10535 |
38600-38608 |
NN |
denotes |
receptor |
T10536 |
38609-38613 |
NN |
denotes |
gene |
T10537 |
38614-38624 |
NN |
denotes |
expression |
T10538 |
38624-38625 |
. |
denotes |
. |
T10707 |
38935-38942 |
NNS |
denotes |
embryos |
T10708 |
38923-38928 |
NN |
denotes |
E16.5 |
T10657 |
38650-38664 |
NN |
denotes |
Identification |
T10658 |
38665-38667 |
IN |
denotes |
of |
T10659 |
38668-38677 |
JJ |
denotes |
olfactory |
T10660 |
38678-38686 |
NN |
denotes |
receptor |
T10661 |
38687-38692 |
NNS |
denotes |
cDNAs |
T10662 |
38692-39016 |
sentence |
denotes |
An adult mouse cDNA library made from the olfactory epithelium of a single animal was provided by Leslie Vosshall (Rockefeller University, New York, NY, USA), and an embryonic library (made from the olfactory epithelia of several E16.5-E18.5 embryos) was provided by Tyler Cutforth (Columbia University, New York, NY, USA). |
T10663 |
38693-38695 |
DT |
denotes |
An |
T10664 |
38713-38720 |
NN |
denotes |
library |
T10665 |
38696-38701 |
JJ |
denotes |
adult |
T10666 |
38702-38707 |
NN |
denotes |
mouse |
T10667 |
38708-38712 |
NN |
denotes |
cDNA |
T10668 |
38779-38787 |
VBN |
denotes |
provided |
T10669 |
38721-38725 |
VBN |
denotes |
made |
T10670 |
38726-38730 |
IN |
denotes |
from |
T10671 |
38731-38734 |
DT |
denotes |
the |
T10672 |
38745-38755 |
NN |
denotes |
epithelium |
T10673 |
38735-38744 |
JJ |
denotes |
olfactory |
T10674 |
38756-38758 |
IN |
denotes |
of |
T10675 |
38759-38760 |
DT |
denotes |
a |
T10676 |
38768-38774 |
NN |
denotes |
animal |
T10677 |
38761-38767 |
JJ |
denotes |
single |
T10678 |
38775-38778 |
VBD |
denotes |
was |
T10679 |
38788-38790 |
IN |
denotes |
by |
T10680 |
38791-38797 |
NNP |
denotes |
Leslie |
T10681 |
38798-38806 |
NNP |
denotes |
Vosshall |
T10682 |
38807-38808 |
-LRB- |
denotes |
( |
T10683 |
38820-38830 |
NNP |
denotes |
University |
T10684 |
38808-38819 |
NNP |
denotes |
Rockefeller |
T10685 |
38830-38832 |
, |
denotes |
, |
T10686 |
38832-38835 |
NNP |
denotes |
New |
T10687 |
38836-38840 |
NNP |
denotes |
York |
T10688 |
38840-38842 |
, |
denotes |
, |
T10689 |
38842-38844 |
NNP |
denotes |
NY |
T10690 |
38844-38846 |
, |
denotes |
, |
T10691 |
38846-38849 |
NNP |
denotes |
USA |
T10692 |
38849-38850 |
-RRB- |
denotes |
) |
T10693 |
38850-38852 |
, |
denotes |
, |
T10694 |
38852-38855 |
CC |
denotes |
and |
T10695 |
38856-38858 |
DT |
denotes |
an |
T10696 |
38869-38876 |
NN |
denotes |
library |
T10697 |
38859-38868 |
JJ |
denotes |
embryonic |
T10698 |
38948-38956 |
VBN |
denotes |
provided |
T10699 |
38877-38878 |
-LRB- |
denotes |
( |
T10700 |
38878-38882 |
VBN |
denotes |
made |
T10701 |
38883-38887 |
IN |
denotes |
from |
T10702 |
38888-38891 |
DT |
denotes |
the |
T10703 |
38902-38911 |
NNS |
denotes |
epithelia |
T10704 |
38892-38901 |
JJ |
denotes |
olfactory |
T10705 |
38912-38914 |
IN |
denotes |
of |
T10706 |
38915-38922 |
JJ |
denotes |
several |
T10709 |
38929-38934 |
NN |
denotes |
E18.5 |
T10710 |
38928-38929 |
HYPH |
denotes |
- |
T10711 |
38942-38943 |
-RRB- |
denotes |
) |
T10712 |
38944-38947 |
VBD |
denotes |
was |
T10713 |
38957-38959 |
IN |
denotes |
by |
T10714 |
38960-38965 |
NNP |
denotes |
Tyler |
T10715 |
38966-38974 |
NNP |
denotes |
Cutforth |
T10716 |
38975-38976 |
-LRB- |
denotes |
( |
T10717 |
38985-38995 |
NNP |
denotes |
University |
T10718 |
38976-38984 |
NNP |
denotes |
Columbia |
T10719 |
38995-38997 |
, |
denotes |
, |
T10720 |
38997-39000 |
NNP |
denotes |
New |
T10721 |
39001-39005 |
NNP |
denotes |
York |
T10722 |
39005-39007 |
, |
denotes |
, |
T10723 |
39007-39009 |
NNP |
denotes |
NY |
T10724 |
39009-39011 |
, |
denotes |
, |
T10725 |
39011-39014 |
NNP |
denotes |
USA |
T10726 |
39014-39015 |
-RRB- |
denotes |
) |
T10727 |
39015-39016 |
. |
denotes |
. |
T10728 |
39016-39139 |
sentence |
denotes |
Both libraries were oligo-dT primed and directionally cloned into the lambdaZAP-XR vector (Stratagene, La Jolla, CA, USA). |
T10729 |
39017-39021 |
DT |
denotes |
Both |
T10730 |
39022-39031 |
NNS |
denotes |
libraries |
T10731 |
39046-39052 |
VBN |
denotes |
primed |
T10732 |
39032-39036 |
VBD |
denotes |
were |
T10733 |
39037-39042 |
NN |
denotes |
oligo |
T10734 |
39042-39043 |
HYPH |
denotes |
- |
T10735 |
39043-39045 |
NN |
denotes |
dT |
T10736 |
39053-39056 |
CC |
denotes |
and |
T10737 |
39057-39070 |
RB |
denotes |
directionally |
T10738 |
39071-39077 |
VBN |
denotes |
cloned |
T10739 |
39078-39082 |
IN |
denotes |
into |
T10740 |
39083-39086 |
DT |
denotes |
the |
T10741 |
39100-39106 |
NN |
denotes |
vector |
T10742 |
39087-39096 |
NN |
denotes |
lambdaZAP |
T10743 |
39097-39099 |
NN |
denotes |
XR |
T10744 |
39096-39097 |
HYPH |
denotes |
- |
T10745 |
39107-39108 |
-LRB- |
denotes |
( |
T10746 |
39108-39118 |
NNP |
denotes |
Stratagene |
T10747 |
39118-39120 |
, |
denotes |
, |
T10748 |
39120-39122 |
NNP |
denotes |
La |
T10749 |
39123-39128 |
NNP |
denotes |
Jolla |
T10750 |
39128-39130 |
, |
denotes |
, |
T10751 |
39130-39132 |
NNP |
denotes |
CA |
T10752 |
39132-39134 |
, |
denotes |
, |
T10753 |
39134-39137 |
NNP |
denotes |
USA |
T10754 |
39137-39138 |
-RRB- |
denotes |
) |
T10755 |
39138-39139 |
. |
denotes |
. |
T10756 |
39139-39261 |
sentence |
denotes |
The adult library has a complexity of 6.5 × 106 primary clones, and the embryonic library has a complexity of 1.65 × 106. |
T10757 |
39140-39143 |
DT |
denotes |
The |
T10758 |
39150-39157 |
NN |
denotes |
library |
T10759 |
39144-39149 |
JJ |
denotes |
adult |
T10760 |
39158-39161 |
VBZ |
denotes |
has |
T10761 |
39162-39163 |
DT |
denotes |
a |
T10762 |
39164-39174 |
NN |
denotes |
complexity |
T10763 |
39175-39177 |
IN |
denotes |
of |
T10764 |
39178-39181 |
CD |
denotes |
6.5 |
T10765 |
39184-39187 |
CD |
denotes |
106 |
T10766 |
39182-39183 |
SYM |
denotes |
× |
T10767 |
39196-39202 |
NNS |
denotes |
clones |
T10768 |
39188-39195 |
JJ |
denotes |
primary |
T10769 |
39202-39204 |
, |
denotes |
, |
T10770 |
39204-39207 |
CC |
denotes |
and |
T10771 |
39208-39211 |
DT |
denotes |
the |
T10772 |
39222-39229 |
NN |
denotes |
library |
T10773 |
39212-39221 |
JJ |
denotes |
embryonic |
T10774 |
39230-39233 |
VBZ |
denotes |
has |
T10775 |
39234-39235 |
DT |
denotes |
a |
T10776 |
39236-39246 |
NN |
denotes |
complexity |
T10777 |
39247-39249 |
IN |
denotes |
of |
T10778 |
39250-39254 |
CD |
denotes |
1.65 |
T10779 |
39257-39260 |
CD |
denotes |
106 |
T10780 |
39255-39256 |
SYM |
denotes |
× |
T10781 |
39260-39261 |
. |
denotes |
. |
T10782 |
39261-39359 |
sentence |
denotes |
Libraries were amplified to give titers of 5 × 109 pfu/ml (adult) or 2 × 1010 pfu/ml (embryonic). |
T10783 |
39262-39271 |
NNS |
denotes |
Libraries |
T10784 |
39277-39286 |
VBN |
denotes |
amplified |
T10785 |
39272-39276 |
VBD |
denotes |
were |
T10786 |
39287-39289 |
TO |
denotes |
to |
T10787 |
39290-39294 |
VB |
denotes |
give |
T10788 |
39295-39301 |
NNS |
denotes |
titers |
T10789 |
39302-39304 |
IN |
denotes |
of |
T10790 |
39305-39306 |
CD |
denotes |
5 |
T10791 |
39309-39312 |
CD |
denotes |
109 |
T10792 |
39307-39308 |
SYM |
denotes |
× |
T10793 |
39313-39316 |
NNS |
denotes |
pfu |
T10794 |
39316-39317 |
SYM |
denotes |
/ |
T10795 |
39317-39319 |
NN |
denotes |
ml |
T10796 |
39320-39321 |
-LRB- |
denotes |
( |
T10797 |
39321-39326 |
JJ |
denotes |
adult |
T10798 |
39326-39327 |
-RRB- |
denotes |
) |
T10799 |
39328-39330 |
CC |
denotes |
or |
T10800 |
39331-39332 |
CD |
denotes |
2 |
T10801 |
39335-39339 |
CD |
denotes |
1010 |
T10802 |
39333-39334 |
SYM |
denotes |
× |
T10803 |
39340-39343 |
NNS |
denotes |
pfu |
T10804 |
39343-39344 |
SYM |
denotes |
/ |
T10805 |
39344-39346 |
NN |
denotes |
ml |
T10806 |
39347-39348 |
-LRB- |
denotes |
( |
T10807 |
39348-39357 |
JJ |
denotes |
embryonic |
T10808 |
39357-39358 |
-RRB- |
denotes |
) |
T10809 |
39358-39359 |
. |
denotes |
. |
T10810 |
39359-39549 |
sentence |
denotes |
Hybridization probes were made by degenerate PCR of mouse genomic DNA, in a fashion similar to those described previously [1], with primer pairs and annealing temperatures given in Table 2. |
T10811 |
39360-39373 |
NN |
denotes |
Hybridization |
T10812 |
39374-39380 |
NNS |
denotes |
probes |
T10813 |
39386-39390 |
VBN |
denotes |
made |
T10814 |
39381-39385 |
VBD |
denotes |
were |
T10815 |
39391-39393 |
IN |
denotes |
by |
T10816 |
39394-39404 |
JJ |
denotes |
degenerate |
T10817 |
39405-39408 |
NN |
denotes |
PCR |
T10818 |
39409-39411 |
IN |
denotes |
of |
T10819 |
39412-39417 |
NN |
denotes |
mouse |
T10820 |
39426-39429 |
NN |
denotes |
DNA |
T10821 |
39418-39425 |
JJ |
denotes |
genomic |
T10822 |
39429-39431 |
, |
denotes |
, |
T10823 |
39431-39433 |
IN |
denotes |
in |
T10824 |
39434-39435 |
DT |
denotes |
a |
T10825 |
39436-39443 |
NN |
denotes |
fashion |
T10826 |
39444-39451 |
JJ |
denotes |
similar |
T10827 |
39452-39454 |
IN |
denotes |
to |
T10828 |
39455-39460 |
DT |
denotes |
those |
T10829 |
39461-39470 |
VBN |
denotes |
described |
T10830 |
39471-39481 |
RB |
denotes |
previously |
T10831 |
39482-39483 |
-LRB- |
denotes |
[ |
T10832 |
39483-39484 |
CD |
denotes |
1 |
T10833 |
39484-39485 |
-RRB- |
denotes |
] |
T10834 |
39485-39487 |
, |
denotes |
, |
T10835 |
39487-39491 |
IN |
denotes |
with |
T10836 |
39532-39537 |
VBN |
denotes |
given |
T10837 |
39492-39498 |
NN |
denotes |
primer |
T10838 |
39499-39504 |
NNS |
denotes |
pairs |
T10839 |
39505-39508 |
CC |
denotes |
and |
T10840 |
39509-39518 |
VBG |
denotes |
annealing |
T10841 |
39519-39531 |
NNS |
denotes |
temperatures |
T10842 |
39538-39540 |
IN |
denotes |
in |
T10843 |
39541-39546 |
NN |
denotes |
Table |
T10844 |
39547-39548 |
CD |
denotes |
2 |
T10845 |
39548-39549 |
. |
denotes |
. |
T10846 |
39549-39612 |
sentence |
denotes |
Low-stringency hybridization conditions were as described [1]. |
T10847 |
39550-39553 |
JJ |
denotes |
Low |
T10848 |
39554-39564 |
NN |
denotes |
stringency |
T10849 |
39553-39554 |
HYPH |
denotes |
- |
T10850 |
39579-39589 |
NNS |
denotes |
conditions |
T10851 |
39565-39578 |
NN |
denotes |
hybridization |
T10852 |
39590-39594 |
VBD |
denotes |
were |
T10853 |
39595-39597 |
IN |
denotes |
as |
T10854 |
39598-39607 |
VBN |
denotes |
described |
T10855 |
39608-39609 |
-LRB- |
denotes |
[ |
T10856 |
39609-39610 |
CD |
denotes |
1 |
T10857 |
39610-39611 |
-RRB- |
denotes |
] |
T10858 |
39611-39612 |
. |
denotes |
. |
T10859 |
39612-39732 |
sentence |
denotes |
Clonally-pure plaques were obtained through secondary screens using the same probe as the corresponding primary screen. |
T10860 |
39613-39621 |
RB |
denotes |
Clonally |
T10861 |
39622-39626 |
JJ |
denotes |
pure |
T10862 |
39621-39622 |
HYPH |
denotes |
- |
T10863 |
39627-39634 |
NNS |
denotes |
plaques |
T10864 |
39640-39648 |
VBN |
denotes |
obtained |
T10865 |
39635-39639 |
VBD |
denotes |
were |
T10866 |
39649-39656 |
IN |
denotes |
through |
T10867 |
39657-39666 |
JJ |
denotes |
secondary |
T10868 |
39667-39674 |
NNS |
denotes |
screens |
T10869 |
39675-39680 |
VBG |
denotes |
using |
T10870 |
39681-39684 |
DT |
denotes |
the |
T10871 |
39690-39695 |
NN |
denotes |
probe |
T10872 |
39685-39689 |
JJ |
denotes |
same |
T10873 |
39696-39698 |
IN |
denotes |
as |
T10874 |
39699-39702 |
DT |
denotes |
the |
T10875 |
39725-39731 |
NN |
denotes |
screen |
T10876 |
39703-39716 |
VBG |
denotes |
corresponding |
T10877 |
39717-39724 |
JJ |
denotes |
primary |
T10878 |
39731-39732 |
. |
denotes |
. |
T10879 |
39732-39812 |
sentence |
denotes |
PCR with vector primers (M13F/R) was performed to prepare sequencing templates. |
T10880 |
39733-39736 |
NN |
denotes |
PCR |
T10881 |
39770-39779 |
VBN |
denotes |
performed |
T10882 |
39737-39741 |
IN |
denotes |
with |
T10883 |
39742-39748 |
NN |
denotes |
vector |
T10884 |
39749-39756 |
NNS |
denotes |
primers |
T10885 |
39757-39758 |
-LRB- |
denotes |
( |
T10886 |
39763-39764 |
NN |
denotes |
R |
T10887 |
39758-39762 |
NN |
denotes |
M13F |
T10888 |
39762-39763 |
HYPH |
denotes |
/ |
T10889 |
39764-39765 |
-RRB- |
denotes |
) |
T10890 |
39766-39769 |
VBD |
denotes |
was |
T10891 |
39780-39782 |
TO |
denotes |
to |
T10892 |
39783-39790 |
VB |
denotes |
prepare |
T10893 |
39791-39801 |
NN |
denotes |
sequencing |
T10894 |
39802-39811 |
NNS |
denotes |
templates |
T10895 |
39811-39812 |
. |
denotes |
. |
T10896 |
39812-40049 |
sentence |
denotes |
cDNA size estimates were obtained by agarose gel electrophoresis, and inserts were sequenced from the 5' end using the M13R primer and big-dye terminator chemistry according to ABI's protocols (Applied Biosystems, Foster City, CA, USA). |
T10897 |
39813-39817 |
NN |
denotes |
cDNA |
T10898 |
39818-39822 |
NN |
denotes |
size |
T10899 |
39823-39832 |
NNS |
denotes |
estimates |
T10900 |
39838-39846 |
VBN |
denotes |
obtained |
T10901 |
39833-39837 |
VBD |
denotes |
were |
T10902 |
39847-39849 |
IN |
denotes |
by |
T10903 |
39850-39857 |
NN |
denotes |
agarose |
T10904 |
39858-39861 |
NN |
denotes |
gel |
T10905 |
39862-39877 |
NN |
denotes |
electrophoresis |
T10906 |
39877-39879 |
, |
denotes |
, |
T10907 |
39879-39882 |
CC |
denotes |
and |
T10908 |
39883-39890 |
NNS |
denotes |
inserts |
T10909 |
39896-39905 |
VBN |
denotes |
sequenced |
T10910 |
39891-39895 |
VBD |
denotes |
were |
T10911 |
39906-39910 |
IN |
denotes |
from |
T10912 |
39911-39914 |
DT |
denotes |
the |
T10913 |
39918-39921 |
NN |
denotes |
end |
T10914 |
39915-39916 |
CD |
denotes |
5 |
T10915 |
39916-39917 |
SYM |
denotes |
' |
T10916 |
39922-39927 |
VBG |
denotes |
using |
T10917 |
39928-39931 |
DT |
denotes |
the |
T10918 |
39937-39943 |
NN |
denotes |
primer |
T10919 |
39932-39936 |
NN |
denotes |
M13R |
T10920 |
39944-39947 |
CC |
denotes |
and |
T10921 |
39948-39951 |
JJ |
denotes |
big |
T10922 |
39952-39955 |
NN |
denotes |
dye |
T10923 |
39951-39952 |
HYPH |
denotes |
- |
T10924 |
39967-39976 |
NN |
denotes |
chemistry |
T10925 |
39956-39966 |
NN |
denotes |
terminator |
T10926 |
39977-39986 |
VBG |
denotes |
according |
T10927 |
39987-39989 |
IN |
denotes |
to |
T10928 |
39990-39993 |
NNP |
denotes |
ABI |
T10929 |
39996-40005 |
NNS |
denotes |
protocols |
T10930 |
39993-39995 |
POS |
denotes |
's |
T10931 |
40006-40007 |
-LRB- |
denotes |
( |
T10932 |
40015-40025 |
NNP |
denotes |
Biosystems |
T10933 |
40007-40014 |
NNP |
denotes |
Applied |
T10934 |
40025-40027 |
, |
denotes |
, |
T10935 |
40027-40033 |
NNP |
denotes |
Foster |
T10936 |
40034-40038 |
NNP |
denotes |
City |
T10937 |
40038-40040 |
, |
denotes |
, |
T10938 |
40040-40042 |
NNP |
denotes |
CA |
T10939 |
40042-40044 |
, |
denotes |
, |
T10940 |
40044-40047 |
NNP |
denotes |
USA |
T10941 |
40047-40048 |
-RRB- |
denotes |
) |
T10942 |
40048-40049 |
. |
denotes |
. |
T10943 |
40049-40211 |
sentence |
denotes |
In order to obtain 3' sequence, selected phage clones were converted to plasmid stocks following a scaled-down version of Stratagene's in vivo excision protocol. |
T10944 |
40050-40052 |
IN |
denotes |
In |
T10945 |
40109-40118 |
VBN |
denotes |
converted |
T10946 |
40053-40058 |
NN |
denotes |
order |
T10947 |
40059-40061 |
TO |
denotes |
to |
T10948 |
40062-40068 |
VB |
denotes |
obtain |
T10949 |
40069-40070 |
CD |
denotes |
3 |
T10950 |
40072-40080 |
NN |
denotes |
sequence |
T10951 |
40070-40071 |
SYM |
denotes |
' |
T10952 |
40080-40082 |
, |
denotes |
, |
T10953 |
40082-40090 |
VBN |
denotes |
selected |
T10954 |
40097-40103 |
NNS |
denotes |
clones |
T10955 |
40091-40096 |
NN |
denotes |
phage |
T10956 |
40104-40108 |
VBD |
denotes |
were |
T10957 |
40119-40121 |
IN |
denotes |
to |
T10958 |
40122-40129 |
NN |
denotes |
plasmid |
T10959 |
40130-40136 |
NNS |
denotes |
stocks |
T10960 |
40137-40146 |
VBG |
denotes |
following |
T10961 |
40147-40148 |
DT |
denotes |
a |
T10962 |
40161-40168 |
NN |
denotes |
version |
T10963 |
40149-40155 |
VBN |
denotes |
scaled |
T10964 |
40155-40156 |
HYPH |
denotes |
- |
T10965 |
40156-40160 |
RP |
denotes |
down |
T10966 |
40169-40171 |
IN |
denotes |
of |
T10967 |
40172-40182 |
NNP |
denotes |
Stratagene |
T10968 |
40202-40210 |
NN |
denotes |
protocol |
T10969 |
40182-40184 |
POS |
denotes |
's |
T10970 |
40185-40187 |
FW |
denotes |
in |
T10971 |
40188-40192 |
FW |
denotes |
vivo |
T10972 |
40193-40201 |
NN |
denotes |
excision |
T10973 |
40210-40211 |
. |
denotes |
. |
T10974 |
40211-40345 |
sentence |
denotes |
Plasmid DNA gave better 3'-end sequence than PCR products, which often suffered from polymerase stuttering through the poly(A) tract. |
T10975 |
40212-40219 |
NN |
denotes |
Plasmid |
T10976 |
40220-40223 |
NN |
denotes |
DNA |
T10977 |
40224-40228 |
VBD |
denotes |
gave |
T10978 |
40229-40235 |
JJR |
denotes |
better |
T10979 |
40243-40251 |
NN |
denotes |
sequence |
T10980 |
40236-40237 |
CD |
denotes |
3 |
T10981 |
40239-40242 |
NN |
denotes |
end |
T10982 |
40237-40238 |
SYM |
denotes |
' |
T10983 |
40238-40239 |
HYPH |
denotes |
- |
T10984 |
40252-40256 |
IN |
denotes |
than |
T10985 |
40257-40260 |
NN |
denotes |
PCR |
T10986 |
40261-40269 |
NNS |
denotes |
products |
T10987 |
40269-40271 |
, |
denotes |
, |
T10988 |
40271-40276 |
WDT |
denotes |
which |
T10989 |
40283-40291 |
VBD |
denotes |
suffered |
T10990 |
40277-40282 |
RB |
denotes |
often |
T10991 |
40292-40296 |
IN |
denotes |
from |
T10992 |
40297-40307 |
NN |
denotes |
polymerase |
T10993 |
40308-40318 |
VBG |
denotes |
stuttering |
T10994 |
40319-40326 |
IN |
denotes |
through |
T10995 |
40327-40330 |
DT |
denotes |
the |
T10996 |
40339-40344 |
NN |
denotes |
tract |
T10997 |
40331-40335 |
NN |
denotes |
poly |
T10998 |
40335-40336 |
-LRB- |
denotes |
( |
T10999 |
40336-40337 |
NN |
denotes |
A |
T11000 |
40337-40338 |
-RRB- |
denotes |
) |
T11001 |
40344-40345 |
. |
denotes |
. |
T11002 |
40345-40496 |
sentence |
denotes |
cDNA sequences and associated information are available through dbEST (Genbank accessions CB172832-CB174569) and our olfactory receptor database [46]. |
T11003 |
40346-40350 |
NN |
denotes |
cDNA |
T11004 |
40351-40360 |
NNS |
denotes |
sequences |
T11005 |
40388-40391 |
VBP |
denotes |
are |
T11006 |
40361-40364 |
CC |
denotes |
and |
T11007 |
40365-40375 |
VBN |
denotes |
associated |
T11008 |
40376-40387 |
NN |
denotes |
information |
T11018 |
40453-40454 |
-RRB- |
denotes |
) |
T11019 |
40455-40458 |
CC |
denotes |
and |
T11020 |
40459-40462 |
PRP$ |
denotes |
our |
T11021 |
40482-40490 |
NN |
denotes |
database |
T11022 |
40463-40472 |
JJ |
denotes |
olfactory |
T11023 |
40473-40481 |
NN |
denotes |
receptor |
T11024 |
40491-40492 |
-LRB- |
denotes |
[ |
T11025 |
40492-40494 |
CD |
denotes |
46 |
T11026 |
40494-40495 |
-RRB- |
denotes |
] |
T11027 |
40495-40496 |
. |
denotes |
. |
T11028 |
40496-40601 |
sentence |
denotes |
The updated olfactory receptor gene catalog is available through Genbank (accessions AY317244-AY318733). |
T11029 |
40497-40500 |
DT |
denotes |
The |
T11030 |
40533-40540 |
NN |
denotes |
catalog |
T11031 |
40501-40508 |
JJ |
denotes |
updated |
T11032 |
40509-40518 |
JJ |
denotes |
olfactory |
T11033 |
40519-40527 |
NN |
denotes |
receptor |
T11034 |
40528-40532 |
NN |
denotes |
gene |
T11035 |
40541-40543 |
VBZ |
denotes |
is |
T11036 |
40544-40553 |
JJ |
denotes |
available |
T11037 |
40554-40561 |
IN |
denotes |
through |
T11038 |
40562-40569 |
NNP |
denotes |
Genbank |
T11039 |
40570-40571 |
-LRB- |
denotes |
( |
T11040 |
40582-40590 |
NN |
denotes |
AY317244 |
T11041 |
40571-40581 |
NNS |
denotes |
accessions |
T11042 |
40590-40591 |
SYM |
denotes |
- |
T11043 |
40591-40599 |
NN |
denotes |
AY318733 |
T11044 |
40599-40600 |
-RRB- |
denotes |
) |
T11045 |
40600-40601 |
. |
denotes |
. |
T11046 |
40601-40686 |
sentence |
denotes |
Throughout the manuscript, genes are referred to by their Genbank accession numbers. |
T11047 |
40602-40612 |
IN |
denotes |
Throughout |
T11048 |
40639-40647 |
VBN |
denotes |
referred |
T11049 |
40613-40616 |
DT |
denotes |
the |
T11050 |
40617-40627 |
NN |
denotes |
manuscript |
T11051 |
40627-40629 |
, |
denotes |
, |
T11052 |
40629-40634 |
NNS |
denotes |
genes |
T11053 |
40635-40638 |
VBP |
denotes |
are |
T11054 |
40648-40650 |
IN |
denotes |
to |
T11055 |
40651-40653 |
IN |
denotes |
by |
T11056 |
40654-40659 |
PRP$ |
denotes |
their |
T11057 |
40678-40685 |
NNS |
denotes |
numbers |
T11058 |
40660-40667 |
NNP |
denotes |
Genbank |
T11059 |
40668-40677 |
NN |
denotes |
accession |
T11060 |
40685-40686 |
. |
denotes |
. |
T11276 |
40688-40696 |
NN |
denotes |
Sequence |
T11277 |
40697-40705 |
NN |
denotes |
analysis |
T11278 |
40705-40854 |
sentence |
denotes |
cDNA sequences were base-called and quality-trimmed using phred (trim_cutoff = 0.05) [47], and vector sequences were removed using cross_match [48]. |
T11279 |
40706-40710 |
NN |
denotes |
cDNA |
T11280 |
40711-40720 |
NNS |
denotes |
sequences |
T11281 |
40731-40737 |
VBN |
denotes |
called |
T11282 |
40721-40725 |
VBD |
denotes |
were |
T11283 |
40726-40730 |
NN |
denotes |
base |
T11284 |
40730-40731 |
HYPH |
denotes |
- |
T11285 |
40738-40741 |
CC |
denotes |
and |
T11286 |
40742-40749 |
NN |
denotes |
quality |
T11287 |
40750-40757 |
VBN |
denotes |
trimmed |
T11288 |
40749-40750 |
HYPH |
denotes |
- |
T11289 |
40758-40763 |
VBG |
denotes |
using |
T11290 |
40764-40769 |
NN |
denotes |
phred |
T11291 |
40770-40771 |
-LRB- |
denotes |
( |
T11292 |
40785-40789 |
CD |
denotes |
0.05 |
T11293 |
40771-40782 |
NN |
denotes |
trim_cutoff |
T11294 |
40783-40784 |
SYM |
denotes |
= |
T11295 |
40789-40790 |
-RRB- |
denotes |
) |
T11296 |
40791-40792 |
-LRB- |
denotes |
[ |
T11297 |
40792-40794 |
CD |
denotes |
47 |
T11298 |
40794-40795 |
-RRB- |
denotes |
] |
T11299 |
40795-40797 |
, |
denotes |
, |
T11300 |
40797-40800 |
CC |
denotes |
and |
T11301 |
40801-40807 |
NN |
denotes |
vector |
T11302 |
40808-40817 |
NNS |
denotes |
sequences |
T11303 |
40823-40830 |
VBN |
denotes |
removed |
T11304 |
40818-40822 |
VBD |
denotes |
were |
T11305 |
40831-40836 |
VBG |
denotes |
using |
T11306 |
40837-40848 |
NN |
denotes |
cross_match |
T11307 |
40849-40850 |
-LRB- |
denotes |
[ |
T11308 |
40850-40852 |
CD |
denotes |
48 |
T11309 |
40852-40853 |
-RRB- |
denotes |
] |
T11310 |
40853-40854 |
. |
denotes |
. |
T11311 |
40854-40918 |
sentence |
denotes |
Any sequences of less than 50 bp after trimming were discarded. |
T11312 |
40855-40858 |
DT |
denotes |
Any |
T11313 |
40859-40868 |
NNS |
denotes |
sequences |
T11314 |
40908-40917 |
VBN |
denotes |
discarded |
T11315 |
40869-40871 |
IN |
denotes |
of |
T11316 |
40872-40876 |
JJR |
denotes |
less |
T11317 |
40882-40884 |
CD |
denotes |
50 |
T11318 |
40877-40881 |
IN |
denotes |
than |
T11319 |
40885-40887 |
NNS |
denotes |
bp |
T11320 |
40888-40893 |
IN |
denotes |
after |
T11321 |
40894-40902 |
NN |
denotes |
trimming |
T11322 |
40903-40907 |
VBD |
denotes |
were |
T11323 |
40917-40918 |
. |
denotes |
. |
T11324 |
40918-41135 |
sentence |
denotes |
3' UTR lengths were estimated by combining approximate insert sizes determined by PCR with 5' sequence data where possible (if the 5' sequence did not extend into the coding region we could not estimate 3' UTR size). |
T11325 |
40919-40920 |
CD |
denotes |
3 |
T11326 |
40922-40925 |
NN |
denotes |
UTR |
T11327 |
40920-40921 |
SYM |
denotes |
' |
T11328 |
40926-40933 |
NNS |
denotes |
lengths |
T11329 |
40939-40948 |
VBN |
denotes |
estimated |
T11330 |
40934-40938 |
VBD |
denotes |
were |
T11331 |
40949-40951 |
IN |
denotes |
by |
T11332 |
40952-40961 |
VBG |
denotes |
combining |
T11333 |
40962-40973 |
JJ |
denotes |
approximate |
T11334 |
40974-40980 |
NN |
denotes |
insert |
T11335 |
40981-40986 |
VBZ |
denotes |
sizes |
T11336 |
40987-40997 |
VBN |
denotes |
determined |
T11337 |
40998-41000 |
IN |
denotes |
by |
T11338 |
41001-41004 |
NN |
denotes |
PCR |
T11339 |
41005-41009 |
IN |
denotes |
with |
T11340 |
41010-41011 |
CD |
denotes |
5 |
T11341 |
41013-41021 |
NN |
denotes |
sequence |
T11342 |
41011-41012 |
SYM |
denotes |
' |
T11343 |
41022-41026 |
NNS |
denotes |
data |
T11344 |
41027-41032 |
WRB |
denotes |
where |
T11345 |
41033-41041 |
JJ |
denotes |
possible |
T11346 |
41042-41043 |
-LRB- |
denotes |
( |
T11347 |
41113-41121 |
VB |
denotes |
estimate |
T11348 |
41043-41045 |
IN |
denotes |
if |
T11349 |
41070-41076 |
VB |
denotes |
extend |
T11350 |
41046-41049 |
DT |
denotes |
the |
T11351 |
41053-41061 |
NN |
denotes |
sequence |
T11352 |
41050-41051 |
CD |
denotes |
5 |
T11353 |
41051-41052 |
SYM |
denotes |
' |
T11354 |
41062-41065 |
VBD |
denotes |
did |
T11355 |
41066-41069 |
RB |
denotes |
not |
T11356 |
41077-41081 |
IN |
denotes |
into |
T11357 |
41082-41085 |
DT |
denotes |
the |
T11358 |
41093-41099 |
NN |
denotes |
region |
T11359 |
41086-41092 |
VBG |
denotes |
coding |
T11360 |
41100-41102 |
PRP |
denotes |
we |
T11361 |
41103-41108 |
MD |
denotes |
could |
T11362 |
41109-41112 |
RB |
denotes |
not |
T11363 |
41122-41123 |
CD |
denotes |
3 |
T11364 |
41125-41128 |
NN |
denotes |
UTR |
T11365 |
41123-41124 |
SYM |
denotes |
' |
T11366 |
41129-41133 |
NN |
denotes |
size |
T11367 |
41133-41134 |
-RRB- |
denotes |
) |
T11368 |
41134-41135 |
. |
denotes |
. |
T11369 |
41135-41373 |
sentence |
denotes |
We counted cDNAs from a given gene as showing alternative polyadenylation site usage if 3' UTR length estimates varied by at least 400 bp - smaller variation could be real, but may not be distinguishable from error in our size estimates. |
T11370 |
41136-41138 |
PRP |
denotes |
We |
T11371 |
41139-41146 |
VBD |
denotes |
counted |
T11372 |
41300-41302 |
VB |
denotes |
be |
T11373 |
41147-41152 |
NNS |
denotes |
cDNAs |
T11374 |
41153-41157 |
IN |
denotes |
from |
T11375 |
41158-41159 |
DT |
denotes |
a |
T11376 |
41166-41170 |
NN |
denotes |
gene |
T11377 |
41160-41165 |
VBN |
denotes |
given |
T11378 |
41171-41173 |
IN |
denotes |
as |
T11379 |
41174-41181 |
VBG |
denotes |
showing |
T11380 |
41182-41193 |
JJ |
denotes |
alternative |
T11381 |
41210-41214 |
NN |
denotes |
site |
T11382 |
41194-41209 |
NN |
denotes |
polyadenylation |
T11383 |
41215-41220 |
NN |
denotes |
usage |
T11384 |
41221-41223 |
IN |
denotes |
if |
T11385 |
41248-41254 |
VBD |
denotes |
varied |
T11386 |
41224-41225 |
CD |
denotes |
3 |
T11387 |
41227-41230 |
NN |
denotes |
UTR |
T11388 |
41225-41226 |
SYM |
denotes |
' |
T11389 |
41231-41237 |
NN |
denotes |
length |
T11390 |
41238-41247 |
NNS |
denotes |
estimates |
T11391 |
41255-41257 |
IN |
denotes |
by |
T11392 |
41258-41260 |
RB |
denotes |
at |
T11393 |
41267-41270 |
CD |
denotes |
400 |
T11394 |
41261-41266 |
RBS |
denotes |
least |
T11395 |
41271-41273 |
NNS |
denotes |
bp |
T11396 |
41274-41275 |
: |
denotes |
- |
T11397 |
41276-41283 |
JJR |
denotes |
smaller |
T11398 |
41284-41293 |
NN |
denotes |
variation |
T11399 |
41294-41299 |
MD |
denotes |
could |
T11400 |
41303-41307 |
JJ |
denotes |
real |
T11401 |
41307-41309 |
, |
denotes |
, |
T11402 |
41309-41312 |
CC |
denotes |
but |
T11403 |
41313-41316 |
MD |
denotes |
may |
T11404 |
41321-41323 |
VB |
denotes |
be |
T11405 |
41317-41320 |
RB |
denotes |
not |
T11406 |
41324-41339 |
JJ |
denotes |
distinguishable |
T11407 |
41340-41344 |
IN |
denotes |
from |
T11408 |
41345-41350 |
NN |
denotes |
error |
T11409 |
41351-41353 |
IN |
denotes |
in |
T11410 |
41354-41357 |
PRP$ |
denotes |
our |
T11411 |
41363-41372 |
NNS |
denotes |
estimates |
T11412 |
41358-41362 |
NN |
denotes |
size |
T11413 |
41372-41373 |
. |
denotes |
. |
T11414 |
41373-41718 |
sentence |
denotes |
To assign cDNAs to their corresponding olfactory receptor genes, we first defined a genomic 'territory' for each gene, with the following attributes: strand, start position (100 kb upstream of the start codon or 1 kb after the previous gene upstream on the same strand, whichever is closer) and end position (1 kb downstream of the stop codon). |
T11415 |
41374-41376 |
TO |
denotes |
To |
T11416 |
41377-41383 |
VB |
denotes |
assign |
T11417 |
41448-41455 |
VBD |
denotes |
defined |
T11418 |
41384-41389 |
NNS |
denotes |
cDNAs |
T11419 |
41390-41392 |
IN |
denotes |
to |
T11420 |
41393-41398 |
PRP$ |
denotes |
their |
T11421 |
41432-41437 |
NNS |
denotes |
genes |
T11422 |
41399-41412 |
VBG |
denotes |
corresponding |
T11423 |
41413-41422 |
JJ |
denotes |
olfactory |
T11424 |
41423-41431 |
NN |
denotes |
receptor |
T11425 |
41437-41439 |
, |
denotes |
, |
T11426 |
41439-41441 |
PRP |
denotes |
we |
T11427 |
41442-41447 |
RB |
denotes |
first |
T11428 |
41456-41457 |
DT |
denotes |
a |
T11429 |
41467-41476 |
NN |
denotes |
territory |
T11430 |
41458-41465 |
JJ |
denotes |
genomic |
T11431 |
41466-41467 |
`` |
denotes |
' |
T11432 |
41476-41477 |
'' |
denotes |
' |
T11433 |
41478-41481 |
IN |
denotes |
for |
T11434 |
41482-41486 |
DT |
denotes |
each |
T11435 |
41487-41491 |
NN |
denotes |
gene |
T11436 |
41491-41493 |
, |
denotes |
, |
T11437 |
41493-41497 |
IN |
denotes |
with |
T11438 |
41498-41501 |
DT |
denotes |
the |
T11439 |
41512-41522 |
NNS |
denotes |
attributes |
T11440 |
41502-41511 |
VBG |
denotes |
following |
T11441 |
41522-41524 |
: |
denotes |
: |
T11442 |
41524-41530 |
NN |
denotes |
strand |
T11443 |
41530-41532 |
, |
denotes |
, |
T11444 |
41532-41537 |
NN |
denotes |
start |
T11445 |
41538-41546 |
NN |
denotes |
position |
T11446 |
41547-41548 |
-LRB- |
denotes |
( |
T11447 |
41654-41656 |
VBZ |
denotes |
is |
T11448 |
41548-41551 |
CD |
denotes |
100 |
T11449 |
41552-41554 |
NNS |
denotes |
kb |
T11450 |
41555-41563 |
RB |
denotes |
upstream |
T11451 |
41564-41566 |
IN |
denotes |
of |
T11452 |
41567-41570 |
DT |
denotes |
the |
T11453 |
41577-41582 |
NN |
denotes |
codon |
T11454 |
41571-41576 |
NN |
denotes |
start |
T11455 |
41583-41585 |
CC |
denotes |
or |
T11456 |
41586-41587 |
CD |
denotes |
1 |
T11457 |
41588-41590 |
NN |
denotes |
kb |
T11458 |
41591-41596 |
IN |
denotes |
after |
T11459 |
41615-41623 |
RB |
denotes |
upstream |
T11460 |
41597-41600 |
DT |
denotes |
the |
T11461 |
41610-41614 |
NN |
denotes |
gene |
T11462 |
41601-41609 |
JJ |
denotes |
previous |
T11463 |
41624-41626 |
IN |
denotes |
on |
T11464 |
41627-41630 |
DT |
denotes |
the |
T11465 |
41636-41642 |
NN |
denotes |
strand |
T11466 |
41631-41635 |
JJ |
denotes |
same |
T11467 |
41642-41644 |
, |
denotes |
, |
T11468 |
41644-41653 |
WDT |
denotes |
whichever |
T11469 |
41657-41663 |
JJR |
denotes |
closer |
T11470 |
41663-41664 |
-RRB- |
denotes |
) |
T11471 |
41665-41668 |
CC |
denotes |
and |
T11472 |
41669-41672 |
NN |
denotes |
end |
T11473 |
41673-41681 |
NN |
denotes |
position |
T11474 |
41682-41683 |
-LRB- |
denotes |
( |
T11475 |
41688-41698 |
RB |
denotes |
downstream |
T11476 |
41683-41684 |
CD |
denotes |
1 |
T11477 |
41685-41687 |
NN |
denotes |
kb |
T11478 |
41699-41701 |
IN |
denotes |
of |
T11479 |
41702-41705 |
DT |
denotes |
the |
T11480 |
41711-41716 |
NN |
denotes |
codon |
T11481 |
41706-41710 |
NN |
denotes |
stop |
T11482 |
41716-41717 |
-RRB- |
denotes |
) |
T11483 |
41717-41718 |
. |
denotes |
. |
T11484 |
41718-41886 |
sentence |
denotes |
Trimmed sequences were compared with genomic sequences using sim4 [30] (settings P = 1 to remove polyA tails and N = 1 to perform an intensive search for small exons). |
T11485 |
41719-41726 |
JJ |
denotes |
Trimmed |
T11486 |
41727-41736 |
NNS |
denotes |
sequences |
T11487 |
41742-41750 |
VBN |
denotes |
compared |
T11488 |
41737-41741 |
VBD |
denotes |
were |
T11489 |
41751-41755 |
IN |
denotes |
with |
T11490 |
41756-41763 |
JJ |
denotes |
genomic |
T11491 |
41764-41773 |
NNS |
denotes |
sequences |
T11492 |
41774-41779 |
VBG |
denotes |
using |
T11493 |
41780-41784 |
NN |
denotes |
sim4 |
T11494 |
41785-41786 |
-LRB- |
denotes |
[ |
T11495 |
41786-41788 |
CD |
denotes |
30 |
T11496 |
41788-41789 |
-RRB- |
denotes |
] |
T11497 |
41790-41791 |
-LRB- |
denotes |
( |
T11498 |
41791-41799 |
NNS |
denotes |
settings |
T11499 |
41800-41801 |
NN |
denotes |
P |
T11500 |
41804-41805 |
CD |
denotes |
1 |
T11501 |
41802-41803 |
SYM |
denotes |
= |
T11502 |
41806-41808 |
TO |
denotes |
to |
T11503 |
41809-41815 |
VB |
denotes |
remove |
T11504 |
41816-41821 |
NN |
denotes |
polyA |
T11505 |
41822-41827 |
NNS |
denotes |
tails |
T11506 |
41828-41831 |
CC |
denotes |
and |
T11507 |
41832-41833 |
NN |
denotes |
N |
T11508 |
41836-41837 |
CD |
denotes |
1 |
T11509 |
41834-41835 |
SYM |
denotes |
= |
T11510 |
41841-41848 |
VB |
denotes |
perform |
T11511 |
41838-41840 |
TO |
denotes |
to |
T11512 |
41849-41851 |
DT |
denotes |
an |
T11513 |
41862-41868 |
NN |
denotes |
search |
T11514 |
41852-41861 |
JJ |
denotes |
intensive |
T11515 |
41869-41872 |
IN |
denotes |
for |
T11516 |
41873-41878 |
JJ |
denotes |
small |
T11517 |
41879-41884 |
NNS |
denotes |
exons |
T11518 |
41884-41885 |
-RRB- |
denotes |
) |
T11519 |
41885-41886 |
. |
denotes |
. |
T11520 |
41886-41964 |
sentence |
denotes |
The sim4 algorithm uses splice-site consensus sequences to refine alignments. |
T11521 |
41887-41890 |
DT |
denotes |
The |
T11522 |
41896-41905 |
NN |
denotes |
algorithm |
T11523 |
41891-41895 |
NN |
denotes |
sim4 |
T11524 |
41906-41910 |
VBZ |
denotes |
uses |
T11525 |
41911-41917 |
NN |
denotes |
splice |
T11526 |
41918-41922 |
NN |
denotes |
site |
T11527 |
41917-41918 |
HYPH |
denotes |
- |
T11528 |
41933-41942 |
NNS |
denotes |
sequences |
T11529 |
41923-41932 |
NN |
denotes |
consensus |
T11530 |
41943-41945 |
TO |
denotes |
to |
T11531 |
41946-41952 |
VB |
denotes |
refine |
T11532 |
41953-41963 |
NNS |
denotes |
alignments |
T11533 |
41963-41964 |
. |
denotes |
. |
T11534 |
41964-42032 |
sentence |
denotes |
Only matches of 96% or greater nucleotide identity were considered. |
T11535 |
41965-41969 |
RB |
denotes |
Only |
T11536 |
41970-41977 |
NNS |
denotes |
matches |
T11537 |
42021-42031 |
VBN |
denotes |
considered |
T11538 |
41978-41980 |
IN |
denotes |
of |
T11539 |
41981-41983 |
CD |
denotes |
96 |
T11540 |
41983-41984 |
NN |
denotes |
% |
T11541 |
42007-42015 |
NN |
denotes |
identity |
T11542 |
41985-41987 |
CC |
denotes |
or |
T11543 |
41988-41995 |
JJR |
denotes |
greater |
T11544 |
41996-42006 |
NN |
denotes |
nucleotide |
T11545 |
42016-42020 |
VBD |
denotes |
were |
T11546 |
42031-42032 |
. |
denotes |
. |
T11547 |
42032-42196 |
sentence |
denotes |
RepeatMasked sequences [49] were also compared to genomic sequences; cDNA:genomic sequence pairings not found in both masked and unmasked alignments were rejected. |
T11548 |
42033-42045 |
JJ |
denotes |
RepeatMasked |
T11549 |
42046-42055 |
NNS |
denotes |
sequences |
T11550 |
42071-42079 |
VBN |
denotes |
compared |
T11551 |
42056-42057 |
-LRB- |
denotes |
[ |
T11552 |
42057-42059 |
CD |
denotes |
49 |
T11553 |
42059-42060 |
-RRB- |
denotes |
] |
T11554 |
42061-42065 |
VBD |
denotes |
were |
T11555 |
42066-42070 |
RB |
denotes |
also |
T11556 |
42080-42082 |
IN |
denotes |
to |
T11557 |
42083-42090 |
JJ |
denotes |
genomic |
T11558 |
42091-42100 |
NNS |
denotes |
sequences |
T11559 |
42100-42101 |
: |
denotes |
; |
T11560 |
42102-42106 |
NN |
denotes |
cDNA |
T11561 |
42187-42195 |
VBN |
denotes |
rejected |
T11562 |
42106-42107 |
: |
denotes |
: |
T11563 |
42107-42114 |
JJ |
denotes |
genomic |
T11564 |
42115-42123 |
NN |
denotes |
sequence |
T11565 |
42124-42132 |
NNS |
denotes |
pairings |
T11566 |
42133-42136 |
RB |
denotes |
not |
T11567 |
42137-42142 |
VBN |
denotes |
found |
T11568 |
42143-42145 |
IN |
denotes |
in |
T11569 |
42146-42150 |
CC |
denotes |
both |
T11570 |
42151-42157 |
JJ |
denotes |
masked |
T11571 |
42171-42181 |
NNS |
denotes |
alignments |
T11572 |
42158-42161 |
CC |
denotes |
and |
T11573 |
42162-42170 |
JJ |
denotes |
unmasked |
T11574 |
42182-42186 |
VBD |
denotes |
were |
T11575 |
42195-42196 |
. |
denotes |
. |
T11576 |
42196-42268 |
sentence |
denotes |
Coordinates from the unmasked alignment were used for further analysis. |
T11577 |
42197-42208 |
NNS |
denotes |
Coordinates |
T11578 |
42242-42246 |
VBN |
denotes |
used |
T11579 |
42209-42213 |
IN |
denotes |
from |
T11580 |
42214-42217 |
DT |
denotes |
the |
T11581 |
42227-42236 |
NN |
denotes |
alignment |
T11582 |
42218-42226 |
JJ |
denotes |
unmasked |
T11583 |
42237-42241 |
VBD |
denotes |
were |
T11584 |
42247-42250 |
IN |
denotes |
for |
T11585 |
42251-42258 |
JJ |
denotes |
further |
T11586 |
42259-42267 |
NN |
denotes |
analysis |
T11587 |
42267-42268 |
. |
denotes |
. |
T11588 |
42268-42350 |
sentence |
denotes |
Any cDNA sequence matching entirely within a territory was assigned to that gene. |
T11589 |
42269-42272 |
DT |
denotes |
Any |
T11590 |
42278-42286 |
NN |
denotes |
sequence |
T11591 |
42273-42277 |
NN |
denotes |
cDNA |
T11592 |
42328-42336 |
VBN |
denotes |
assigned |
T11593 |
42287-42295 |
VBG |
denotes |
matching |
T11594 |
42296-42304 |
RB |
denotes |
entirely |
T11595 |
42305-42311 |
IN |
denotes |
within |
T11596 |
42312-42313 |
DT |
denotes |
a |
T11597 |
42314-42323 |
NN |
denotes |
territory |
T11598 |
42324-42327 |
VBD |
denotes |
was |
T11599 |
42337-42339 |
IN |
denotes |
to |
T11600 |
42340-42344 |
DT |
denotes |
that |
T11601 |
42345-42349 |
NN |
denotes |
gene |
T11602 |
42349-42350 |
. |
denotes |
. |
T11603 |
42350-42563 |
sentence |
denotes |
If a cDNA matched more than one gene territory, the best match was chosen (that is, the one with highest 'score', where score is the total of all exons' lengths multiplied by their respective percent identities). |
T11604 |
42351-42353 |
IN |
denotes |
If |
T11605 |
42361-42368 |
VBD |
denotes |
matched |
T11606 |
42354-42355 |
DT |
denotes |
a |
T11607 |
42356-42360 |
NN |
denotes |
cDNA |
T11608 |
42418-42424 |
VBN |
denotes |
chosen |
T11609 |
42369-42373 |
JJR |
denotes |
more |
T11610 |
42379-42382 |
CD |
denotes |
one |
T11611 |
42374-42378 |
IN |
denotes |
than |
T11612 |
42388-42397 |
NN |
denotes |
territory |
T11613 |
42383-42387 |
NN |
denotes |
gene |
T11614 |
42397-42399 |
, |
denotes |
, |
T11615 |
42399-42402 |
DT |
denotes |
the |
T11616 |
42408-42413 |
NN |
denotes |
match |
T11617 |
42403-42407 |
JJS |
denotes |
best |
T11618 |
42414-42417 |
VBD |
denotes |
was |
T11619 |
42425-42426 |
-LRB- |
denotes |
( |
T11620 |
42439-42442 |
CD |
denotes |
one |
T11621 |
42426-42430 |
RB |
denotes |
that |
T11622 |
42431-42433 |
RB |
denotes |
is |
T11623 |
42433-42435 |
, |
denotes |
, |
T11624 |
42435-42438 |
DT |
denotes |
the |
T11625 |
42443-42447 |
IN |
denotes |
with |
T11626 |
42448-42455 |
JJS |
denotes |
highest |
T11627 |
42457-42462 |
NN |
denotes |
score |
T11628 |
42456-42457 |
`` |
denotes |
' |
T11629 |
42462-42463 |
'' |
denotes |
' |
T11630 |
42463-42465 |
, |
denotes |
, |
T11631 |
42465-42470 |
WRB |
denotes |
where |
T11632 |
42477-42479 |
VBZ |
denotes |
is |
T11633 |
42471-42476 |
NN |
denotes |
score |
T11634 |
42480-42483 |
DT |
denotes |
the |
T11635 |
42484-42489 |
NN |
denotes |
total |
T11636 |
42490-42492 |
IN |
denotes |
of |
T11637 |
42493-42496 |
DT |
denotes |
all |
T11638 |
42497-42502 |
NNS |
denotes |
exons |
T11639 |
42504-42511 |
NNS |
denotes |
lengths |
T11640 |
42502-42503 |
POS |
denotes |
' |
T11641 |
42512-42522 |
VBN |
denotes |
multiplied |
T11642 |
42523-42525 |
IN |
denotes |
by |
T11643 |
42526-42531 |
PRP$ |
denotes |
their |
T11644 |
42551-42561 |
NNS |
denotes |
identities |
T11645 |
42532-42542 |
JJ |
denotes |
respective |
T11646 |
42543-42550 |
NN |
denotes |
percent |
T11647 |
42561-42562 |
-RRB- |
denotes |
) |
T11648 |
42562-42563 |
. |
denotes |
. |
T11649 |
42563-42685 |
sentence |
denotes |
We found 27 cDNAs that spanned a larger genomic range than one gene territory and flagged them for more careful analysis. |
T11650 |
42564-42566 |
PRP |
denotes |
We |
T11651 |
42646-42653 |
VBD |
denotes |
flagged |
T11652 |
42567-42572 |
VBD |
denotes |
found |
T11653 |
42573-42575 |
CD |
denotes |
27 |
T11654 |
42576-42581 |
NNS |
denotes |
cDNAs |
T11655 |
42582-42586 |
WDT |
denotes |
that |
T11656 |
42587-42594 |
VBD |
denotes |
spanned |
T11657 |
42595-42596 |
DT |
denotes |
a |
T11658 |
42612-42617 |
NN |
denotes |
range |
T11659 |
42597-42603 |
JJR |
denotes |
larger |
T11660 |
42604-42611 |
JJ |
denotes |
genomic |
T11661 |
42618-42622 |
IN |
denotes |
than |
T11662 |
42623-42626 |
CD |
denotes |
one |
T11663 |
42632-42641 |
NN |
denotes |
territory |
T11664 |
42627-42631 |
NN |
denotes |
gene |
T11665 |
42642-42645 |
CC |
denotes |
and |
T11666 |
42654-42658 |
PRP |
denotes |
them |
T11667 |
42659-42662 |
IN |
denotes |
for |
T11668 |
42663-42667 |
RBR |
denotes |
more |
T11669 |
42668-42675 |
JJ |
denotes |
careful |
T11670 |
42676-42684 |
NN |
denotes |
analysis |
T11671 |
42684-42685 |
. |
denotes |
. |
T11672 |
42685-42868 |
sentence |
denotes |
Of these, six cDNAs showed unusual splicing within the 3' UTR, but the remaining 'territory violators' were found to be artifacts of the analysis process which fell into three types. |
T11673 |
42686-42688 |
IN |
denotes |
Of |
T11674 |
42706-42712 |
VBD |
denotes |
showed |
T11675 |
42689-42694 |
DT |
denotes |
these |
T11676 |
42694-42696 |
, |
denotes |
, |
T11677 |
42696-42699 |
CD |
denotes |
six |
T11678 |
42700-42705 |
NNS |
denotes |
cDNAs |
T11679 |
42713-42720 |
JJ |
denotes |
unusual |
T11680 |
42721-42729 |
NN |
denotes |
splicing |
T11681 |
42730-42736 |
IN |
denotes |
within |
T11682 |
42737-42740 |
DT |
denotes |
the |
T11683 |
42744-42747 |
NN |
denotes |
UTR |
T11684 |
42741-42742 |
CD |
denotes |
3 |
T11685 |
42742-42743 |
SYM |
denotes |
' |
T11686 |
42747-42749 |
, |
denotes |
, |
T11687 |
42749-42752 |
CC |
denotes |
but |
T11688 |
42753-42756 |
DT |
denotes |
the |
T11689 |
42778-42787 |
NNS |
denotes |
violators |
T11690 |
42757-42766 |
VBG |
denotes |
remaining |
T11691 |
42767-42768 |
`` |
denotes |
' |
T11692 |
42768-42777 |
NN |
denotes |
territory |
T11693 |
42794-42799 |
VBN |
denotes |
found |
T11694 |
42787-42788 |
'' |
denotes |
' |
T11695 |
42789-42793 |
VBD |
denotes |
were |
T11696 |
42800-42802 |
TO |
denotes |
to |
T11697 |
42803-42805 |
VB |
denotes |
be |
T11698 |
42806-42815 |
NNS |
denotes |
artifacts |
T11699 |
42816-42818 |
IN |
denotes |
of |
T11700 |
42819-42822 |
DT |
denotes |
the |
T11701 |
42832-42839 |
NN |
denotes |
process |
T11702 |
42823-42831 |
NN |
denotes |
analysis |
T11703 |
42840-42845 |
WDT |
denotes |
which |
T11704 |
42846-42850 |
VBD |
denotes |
fell |
T11705 |
42851-42855 |
IN |
denotes |
into |
T11706 |
42856-42861 |
CD |
denotes |
three |
T11707 |
42862-42867 |
NNS |
denotes |
types |
T11708 |
42867-42868 |
. |
denotes |
. |
T11709 |
42868-43255 |
sentence |
denotes |
These included: cDNAs where the insert appeared to be cloned in the reverse orientation (six cDNAs); sequences from recently duplicated gene pairs, where sim4 assigned coding region and upstream exons to different members of the pair, although exons could equally well have been aligned closer to one another (six cDNAs); and artifacts due to use of sim4's N = 1 parameter (nine cDNAs). |
T11710 |
42869-42874 |
DT |
denotes |
These |
T11711 |
42875-42883 |
VBD |
denotes |
included |
T11712 |
42883-42885 |
: |
denotes |
: |
T11713 |
42885-42890 |
NNS |
denotes |
cDNAs |
T11714 |
42891-42896 |
WRB |
denotes |
where |
T11715 |
42908-42916 |
VBD |
denotes |
appeared |
T11716 |
42897-42900 |
DT |
denotes |
the |
T11717 |
42901-42907 |
NN |
denotes |
insert |
T11718 |
42917-42919 |
TO |
denotes |
to |
T11719 |
42923-42929 |
VBN |
denotes |
cloned |
T11720 |
42920-42922 |
VB |
denotes |
be |
T11721 |
42930-42932 |
IN |
denotes |
in |
T11722 |
42933-42936 |
DT |
denotes |
the |
T11723 |
42945-42956 |
NN |
denotes |
orientation |
T11724 |
42937-42944 |
JJ |
denotes |
reverse |
T11725 |
42957-42958 |
-LRB- |
denotes |
( |
T11726 |
42962-42967 |
NNS |
denotes |
cDNAs |
T11727 |
42958-42961 |
CD |
denotes |
six |
T11728 |
42967-42968 |
-RRB- |
denotes |
) |
T11729 |
42968-42969 |
: |
denotes |
; |
T11730 |
42970-42979 |
NNS |
denotes |
sequences |
T11731 |
42980-42984 |
IN |
denotes |
from |
T11732 |
42985-42993 |
RB |
denotes |
recently |
T11733 |
42994-43004 |
VBN |
denotes |
duplicated |
T11734 |
43010-43015 |
NNS |
denotes |
pairs |
T11735 |
43005-43009 |
NN |
denotes |
gene |
T11736 |
43015-43017 |
, |
denotes |
, |
T11737 |
43017-43022 |
WRB |
denotes |
where |
T11738 |
43028-43036 |
VBN |
denotes |
assigned |
T11739 |
43023-43027 |
NN |
denotes |
sim4 |
T11740 |
43037-43043 |
VBG |
denotes |
coding |
T11741 |
43044-43050 |
NN |
denotes |
region |
T11742 |
43051-43054 |
CC |
denotes |
and |
T11743 |
43055-43063 |
JJ |
denotes |
upstream |
T11744 |
43064-43069 |
NNS |
denotes |
exons |
T11745 |
43070-43072 |
IN |
denotes |
to |
T11746 |
43073-43082 |
JJ |
denotes |
different |
T11747 |
43083-43090 |
NNS |
denotes |
members |
T11748 |
43091-43093 |
IN |
denotes |
of |
T11749 |
43094-43097 |
DT |
denotes |
the |
T11750 |
43098-43102 |
NN |
denotes |
pair |
T11751 |
43102-43104 |
, |
denotes |
, |
T11752 |
43104-43112 |
IN |
denotes |
although |
T11753 |
43148-43155 |
VBN |
denotes |
aligned |
T11754 |
43113-43118 |
NNS |
denotes |
exons |
T11755 |
43119-43124 |
MD |
denotes |
could |
T11756 |
43125-43132 |
RB |
denotes |
equally |
T11757 |
43133-43137 |
RB |
denotes |
well |
T11758 |
43138-43142 |
VBP |
denotes |
have |
T11759 |
43143-43147 |
VBN |
denotes |
been |
T11760 |
43156-43162 |
RBR |
denotes |
closer |
T11761 |
43163-43165 |
IN |
denotes |
to |
T11762 |
43166-43169 |
CD |
denotes |
one |
T11763 |
43170-43177 |
DT |
denotes |
another |
T11764 |
43178-43179 |
-LRB- |
denotes |
( |
T11765 |
43183-43188 |
NNS |
denotes |
cDNAs |
T11766 |
43179-43182 |
CD |
denotes |
six |
T11767 |
43188-43189 |
-RRB- |
denotes |
) |
T11768 |
43189-43190 |
: |
denotes |
; |
T11769 |
43191-43194 |
CC |
denotes |
and |
T11770 |
43195-43204 |
NNS |
denotes |
artifacts |
T11771 |
43205-43208 |
IN |
denotes |
due |
T11772 |
43209-43211 |
IN |
denotes |
to |
T11773 |
43212-43215 |
NN |
denotes |
use |
T11774 |
43216-43218 |
IN |
denotes |
of |
T11775 |
43219-43223 |
NN |
denotes |
sim4 |
T11776 |
43232-43241 |
NN |
denotes |
parameter |
T11777 |
43223-43225 |
POS |
denotes |
's |
T11778 |
43226-43227 |
NN |
denotes |
N |
T11779 |
43230-43231 |
CD |
denotes |
1 |
T11780 |
43228-43229 |
SYM |
denotes |
= |
T11781 |
43242-43243 |
-LRB- |
denotes |
( |
T11782 |
43248-43253 |
NNS |
denotes |
cDNAs |
T11783 |
43243-43247 |
CD |
denotes |
nine |
T11784 |
43253-43254 |
-RRB- |
denotes |
) |
T11785 |
43254-43255 |
. |
denotes |
. |
T11786 |
43255-43407 |
sentence |
denotes |
This parameter instructs the program to make extra effort to match small upstream exons, allowing a greater total length of EST sequence to be matched. |
T11787 |
43256-43260 |
DT |
denotes |
This |
T11788 |
43261-43270 |
NN |
denotes |
parameter |
T11789 |
43271-43280 |
VBZ |
denotes |
instructs |
T11790 |
43281-43284 |
DT |
denotes |
the |
T11791 |
43285-43292 |
NN |
denotes |
program |
T11792 |
43293-43295 |
TO |
denotes |
to |
T11793 |
43296-43300 |
VB |
denotes |
make |
T11794 |
43301-43306 |
JJ |
denotes |
extra |
T11795 |
43307-43313 |
NN |
denotes |
effort |
T11796 |
43314-43316 |
TO |
denotes |
to |
T11797 |
43317-43322 |
VB |
denotes |
match |
T11798 |
43323-43328 |
JJ |
denotes |
small |
T11799 |
43338-43343 |
NNS |
denotes |
exons |
T11800 |
43329-43337 |
JJ |
denotes |
upstream |
T11801 |
43343-43345 |
, |
denotes |
, |
T11802 |
43345-43353 |
VBG |
denotes |
allowing |
T11803 |
43354-43355 |
DT |
denotes |
a |
T11804 |
43370-43376 |
NN |
denotes |
length |
T11805 |
43356-43363 |
JJR |
denotes |
greater |
T11806 |
43364-43369 |
JJ |
denotes |
total |
T11807 |
43399-43406 |
VBN |
denotes |
matched |
T11808 |
43377-43379 |
IN |
denotes |
of |
T11809 |
43380-43383 |
NN |
denotes |
EST |
T11810 |
43384-43392 |
NN |
denotes |
sequence |
T11811 |
43393-43395 |
TO |
denotes |
to |
T11812 |
43396-43398 |
VB |
denotes |
be |
T11813 |
43406-43407 |
. |
denotes |
. |
T11814 |
43407-43605 |
sentence |
denotes |
However, occasionally the N = 1 parameter caused the program to assign very small sequences (1-4 bp) to distant upstream exons, when they probably match nearer to the corresponding coding sequence. |
T11815 |
43408-43415 |
RB |
denotes |
However |
T11816 |
43450-43456 |
VBD |
denotes |
caused |
T11817 |
43415-43417 |
, |
denotes |
, |
T11818 |
43417-43429 |
RB |
denotes |
occasionally |
T11819 |
43430-43433 |
DT |
denotes |
the |
T11820 |
43440-43449 |
NN |
denotes |
parameter |
T11821 |
43434-43435 |
NN |
denotes |
N |
T11822 |
43438-43439 |
CD |
denotes |
1 |
T11823 |
43436-43437 |
SYM |
denotes |
= |
T11824 |
43457-43460 |
DT |
denotes |
the |
T11825 |
43461-43468 |
NN |
denotes |
program |
T11826 |
43472-43478 |
VB |
denotes |
assign |
T11827 |
43469-43471 |
TO |
denotes |
to |
T11828 |
43479-43483 |
RB |
denotes |
very |
T11829 |
43484-43489 |
JJ |
denotes |
small |
T11830 |
43490-43499 |
NNS |
denotes |
sequences |
T11831 |
43500-43501 |
-LRB- |
denotes |
( |
T11832 |
43505-43507 |
NNS |
denotes |
bp |
T11833 |
43501-43502 |
CD |
denotes |
1 |
T11834 |
43503-43504 |
CD |
denotes |
4 |
T11835 |
43502-43503 |
HYPH |
denotes |
- |
T11836 |
43507-43508 |
-RRB- |
denotes |
) |
T11837 |
43509-43511 |
IN |
denotes |
to |
T11838 |
43512-43519 |
JJ |
denotes |
distant |
T11839 |
43529-43534 |
NNS |
denotes |
exons |
T11840 |
43520-43528 |
JJ |
denotes |
upstream |
T11841 |
43534-43536 |
, |
denotes |
, |
T11842 |
43536-43540 |
WRB |
denotes |
when |
T11843 |
43555-43560 |
VBP |
denotes |
match |
T11844 |
43541-43545 |
PRP |
denotes |
they |
T11845 |
43546-43554 |
RB |
denotes |
probably |
T11846 |
43561-43567 |
RBR |
denotes |
nearer |
T11847 |
43568-43570 |
IN |
denotes |
to |
T11848 |
43571-43574 |
DT |
denotes |
the |
T11849 |
43596-43604 |
NN |
denotes |
sequence |
T11850 |
43575-43588 |
VBG |
denotes |
corresponding |
T11851 |
43589-43595 |
NN |
denotes |
coding |
T11852 |
43604-43605 |
. |
denotes |
. |
T11853 |
43605-43944 |
sentence |
denotes |
The expected distribution shown in Figure 2 was calculated using the equation P(x) = e-μμx/x!, where P(x) is the Poisson probability of observing x cDNAs per gene, and μ is the mean number of cDNAs observed per gene (μ = 1,176/983: 1,176 cDNAs matching olfactory receptor genes in our dataset and 983 intact class II olfactory receptors). |
T11854 |
43606-43609 |
DT |
denotes |
The |
T11855 |
43619-43631 |
NN |
denotes |
distribution |
T11856 |
43610-43618 |
JJ |
denotes |
expected |
T11857 |
43654-43664 |
VBN |
denotes |
calculated |
T11858 |
43632-43637 |
VBN |
denotes |
shown |
T11859 |
43638-43640 |
IN |
denotes |
in |
T11860 |
43641-43647 |
NN |
denotes |
Figure |
T11861 |
43648-43649 |
CD |
denotes |
2 |
T11862 |
43650-43653 |
VBD |
denotes |
was |
T11863 |
43665-43670 |
VBG |
denotes |
using |
T11864 |
43671-43674 |
DT |
denotes |
the |
T11865 |
43675-43683 |
NN |
denotes |
equation |
T11866 |
43684-43685 |
NN |
denotes |
P |
T11867 |
43686-43687 |
NN |
denotes |
x |
T11868 |
43685-43686 |
-LRB- |
denotes |
( |
T11869 |
43693-43696 |
NN |
denotes |
μμx |
T11870 |
43687-43688 |
-RRB- |
denotes |
) |
T11871 |
43689-43690 |
SYM |
denotes |
= |
T11872 |
43691-43692 |
NN |
denotes |
e |
T11873 |
43692-43693 |
SYM |
denotes |
- |
T11874 |
43696-43697 |
SYM |
denotes |
/ |
T11875 |
43697-43698 |
NN |
denotes |
x |
T11876 |
43698-43699 |
SYM |
denotes |
! |
T11877 |
43699-43701 |
, |
denotes |
, |
T11878 |
43701-43706 |
WRB |
denotes |
where |
T11879 |
43712-43714 |
VBZ |
denotes |
is |
T11880 |
43707-43708 |
NN |
denotes |
P |
T11881 |
43709-43710 |
NN |
denotes |
x |
T11882 |
43708-43709 |
-LRB- |
denotes |
( |
T11883 |
43710-43711 |
-RRB- |
denotes |
) |
T11884 |
43715-43718 |
DT |
denotes |
the |
T11885 |
43727-43738 |
NN |
denotes |
probability |
T11886 |
43719-43726 |
NNP |
denotes |
Poisson |
T11887 |
43739-43741 |
IN |
denotes |
of |
T11888 |
43742-43751 |
VBG |
denotes |
observing |
T11889 |
43752-43753 |
NN |
denotes |
x |
T11890 |
43754-43759 |
NNS |
denotes |
cDNAs |
T11891 |
43760-43763 |
IN |
denotes |
per |
T11892 |
43764-43768 |
NN |
denotes |
gene |
T11893 |
43768-43770 |
, |
denotes |
, |
T11894 |
43770-43773 |
CC |
denotes |
and |
T11895 |
43774-43775 |
NN |
denotes |
μ |
T11896 |
43776-43778 |
VBZ |
denotes |
is |
T11897 |
43779-43782 |
DT |
denotes |
the |
T11898 |
43788-43794 |
NN |
denotes |
number |
T11899 |
43783-43787 |
JJ |
denotes |
mean |
T11900 |
43795-43797 |
IN |
denotes |
of |
T11901 |
43798-43803 |
NNS |
denotes |
cDNAs |
T11902 |
43804-43812 |
VBN |
denotes |
observed |
T11903 |
43813-43816 |
IN |
denotes |
per |
T11904 |
43817-43821 |
NN |
denotes |
gene |
T11905 |
43822-43823 |
-LRB- |
denotes |
( |
T11906 |
43844-43849 |
NNS |
denotes |
cDNAs |
T11907 |
43823-43824 |
NN |
denotes |
μ |
T11908 |
43827-43828 |
CD |
denotes |
1 |
T11909 |
43825-43826 |
SYM |
denotes |
= |
T11910 |
43828-43829 |
, |
denotes |
, |
T11911 |
43829-43832 |
CD |
denotes |
176 |
T11912 |
43833-43836 |
CD |
denotes |
983 |
T11913 |
43832-43833 |
SYM |
denotes |
/ |
T11914 |
43836-43838 |
: |
denotes |
: |
T11915 |
43838-43843 |
CD |
denotes |
1,176 |
T11916 |
43850-43858 |
VBG |
denotes |
matching |
T11917 |
43859-43868 |
JJ |
denotes |
olfactory |
T11918 |
43869-43877 |
NN |
denotes |
receptor |
T11919 |
43878-43883 |
NNS |
denotes |
genes |
T11920 |
43884-43886 |
IN |
denotes |
in |
T11921 |
43887-43890 |
PRP$ |
denotes |
our |
T11922 |
43891-43898 |
NN |
denotes |
dataset |
T11923 |
43899-43902 |
CC |
denotes |
and |
T11924 |
43903-43906 |
CD |
denotes |
983 |
T11925 |
43933-43942 |
NNS |
denotes |
receptors |
T11926 |
43907-43913 |
JJ |
denotes |
intact |
T11927 |
43914-43919 |
NN |
denotes |
class |
T11928 |
43920-43922 |
CD |
denotes |
II |
T11929 |
43923-43932 |
JJ |
denotes |
olfactory |
T11930 |
43942-43943 |
-RRB- |
denotes |
) |
T11931 |
43943-43944 |
. |
denotes |
. |
T11932 |
43944-44113 |
sentence |
denotes |
In our analysis of expressed pseudogenes, we ignored two olfactory receptor pseudogenes found very near the ends of genomic sequences and thus likely to be error-prone. |
T11933 |
43945-43947 |
IN |
denotes |
In |
T11934 |
43990-43997 |
VBD |
denotes |
ignored |
T11935 |
43948-43951 |
PRP$ |
denotes |
our |
T11936 |
43952-43960 |
NN |
denotes |
analysis |
T11937 |
43961-43963 |
IN |
denotes |
of |
T11938 |
43964-43973 |
JJ |
denotes |
expressed |
T11939 |
43974-43985 |
NNS |
denotes |
pseudogenes |
T11940 |
43985-43987 |
, |
denotes |
, |
T11941 |
43987-43989 |
PRP |
denotes |
we |
T11942 |
43998-44001 |
CD |
denotes |
two |
T11943 |
44021-44032 |
NNS |
denotes |
pseudogenes |
T11944 |
44002-44011 |
JJ |
denotes |
olfactory |
T11945 |
44012-44020 |
NN |
denotes |
receptor |
T11946 |
44033-44038 |
VBN |
denotes |
found |
T11947 |
44039-44043 |
RB |
denotes |
very |
T11948 |
44044-44048 |
IN |
denotes |
near |
T11949 |
44049-44052 |
DT |
denotes |
the |
T11950 |
44053-44057 |
NNS |
denotes |
ends |
T11951 |
44058-44060 |
IN |
denotes |
of |
T11952 |
44061-44068 |
JJ |
denotes |
genomic |
T11953 |
44069-44078 |
NNS |
denotes |
sequences |
T11954 |
44079-44082 |
CC |
denotes |
and |
T11955 |
44083-44087 |
RB |
denotes |
thus |
T11956 |
44088-44094 |
JJ |
denotes |
likely |
T11957 |
44095-44097 |
TO |
denotes |
to |
T11958 |
44098-44100 |
VB |
denotes |
be |
T11959 |
44101-44106 |
NN |
denotes |
error |
T11960 |
44107-44112 |
JJ |
denotes |
prone |
T11961 |
44106-44107 |
HYPH |
denotes |
- |
T11962 |
44112-44113 |
. |
denotes |
. |
T11963 |
44113-44385 |
sentence |
denotes |
A protein sequence alignment of intact mouse olfactory receptors was generated using CLUSTALW [50], edited by hand, and used to produce the phylogenetic tree shown in Figure 1 using PAUP's neighbor-joining algorithm (v4.0b6 Version 4, Sinauer Associates, Sunderland, MA). |
T11964 |
44114-44115 |
DT |
denotes |
A |
T11965 |
44133-44142 |
NN |
denotes |
alignment |
T11966 |
44116-44123 |
NN |
denotes |
protein |
T11967 |
44124-44132 |
NN |
denotes |
sequence |
T11968 |
44183-44192 |
VBN |
denotes |
generated |
T11969 |
44143-44145 |
IN |
denotes |
of |
T11970 |
44146-44152 |
JJ |
denotes |
intact |
T11971 |
44169-44178 |
NNS |
denotes |
receptors |
T11972 |
44153-44158 |
NN |
denotes |
mouse |
T11973 |
44159-44168 |
JJ |
denotes |
olfactory |
T11974 |
44179-44182 |
VBD |
denotes |
was |
T11975 |
44193-44198 |
VBG |
denotes |
using |
T11976 |
44199-44207 |
NN |
denotes |
CLUSTALW |
T11977 |
44208-44209 |
-LRB- |
denotes |
[ |
T11978 |
44209-44211 |
CD |
denotes |
50 |
T11979 |
44211-44212 |
-RRB- |
denotes |
] |
T11980 |
44212-44214 |
, |
denotes |
, |
T11981 |
44214-44220 |
VBN |
denotes |
edited |
T11982 |
44221-44223 |
IN |
denotes |
by |
T11983 |
44224-44228 |
NN |
denotes |
hand |
T11984 |
44228-44230 |
, |
denotes |
, |
T11985 |
44230-44233 |
CC |
denotes |
and |
T11986 |
44234-44238 |
VBN |
denotes |
used |
T11987 |
44239-44241 |
TO |
denotes |
to |
T11988 |
44242-44249 |
VB |
denotes |
produce |
T11989 |
44250-44253 |
DT |
denotes |
the |
T11990 |
44267-44271 |
NN |
denotes |
tree |
T11991 |
44254-44266 |
JJ |
denotes |
phylogenetic |
T11992 |
44272-44277 |
VBN |
denotes |
shown |
T11993 |
44278-44280 |
IN |
denotes |
in |
T11994 |
44281-44287 |
NN |
denotes |
Figure |
T11995 |
44288-44289 |
CD |
denotes |
1 |
T11996 |
44290-44295 |
VBG |
denotes |
using |
T11997 |
44296-44300 |
NN |
denotes |
PAUP |
T11998 |
44320-44329 |
NN |
denotes |
algorithm |
T11999 |
44300-44302 |
POS |
denotes |
's |
T12000 |
44303-44311 |
NN |
denotes |
neighbor |
T12001 |
44312-44319 |
VBG |
denotes |
joining |
T12002 |
44311-44312 |
HYPH |
denotes |
- |
T12003 |
44330-44331 |
-LRB- |
denotes |
( |
T12004 |
44357-44367 |
NNPS |
denotes |
Associates |
T12005 |
44331-44337 |
NN |
denotes |
v4.0b6 |
T12006 |
44338-44345 |
NN |
denotes |
Version |
T12007 |
44346-44347 |
CD |
denotes |
4 |
T12008 |
44347-44349 |
, |
denotes |
, |
T12009 |
44349-44356 |
NNP |
denotes |
Sinauer |
T12010 |
44367-44369 |
, |
denotes |
, |
T12011 |
44369-44379 |
NNP |
denotes |
Sunderland |
T12012 |
44379-44381 |
, |
denotes |
, |
T12013 |
44381-44383 |
NNP |
denotes |
MA |
T12014 |
44383-44384 |
-RRB- |
denotes |
) |
T12015 |
44384-44385 |
. |
denotes |
. |
T12016 |
44385-44429 |
sentence |
denotes |
The tree was colored using a custom script. |
T12017 |
44386-44389 |
DT |
denotes |
The |
T12018 |
44390-44394 |
NN |
denotes |
tree |
T12019 |
44399-44406 |
VBN |
denotes |
colored |
T12020 |
44395-44398 |
VBD |
denotes |
was |
T12021 |
44407-44412 |
VBG |
denotes |
using |
T12022 |
44413-44414 |
DT |
denotes |
a |
T12023 |
44422-44428 |
NN |
denotes |
script |
T12024 |
44415-44421 |
NN |
denotes |
custom |
T12025 |
44428-44429 |
. |
denotes |
. |
T12026 |
44429-44574 |
sentence |
denotes |
Information content (the measure of sequence conservation shown in Figure 6) was calculated for each position in the alignment using alpro [51]. |
T12027 |
44430-44441 |
NN |
denotes |
Information |
T12028 |
44442-44449 |
NN |
denotes |
content |
T12029 |
44511-44521 |
VBN |
denotes |
calculated |
T12030 |
44450-44451 |
-LRB- |
denotes |
( |
T12031 |
44451-44454 |
DT |
denotes |
the |
T12032 |
44455-44462 |
NN |
denotes |
measure |
T12033 |
44463-44465 |
IN |
denotes |
of |
T12034 |
44466-44474 |
NN |
denotes |
sequence |
T12035 |
44475-44487 |
NN |
denotes |
conservation |
T12036 |
44488-44493 |
VBN |
denotes |
shown |
T12037 |
44494-44496 |
IN |
denotes |
in |
T12038 |
44497-44503 |
NN |
denotes |
Figure |
T12039 |
44504-44505 |
CD |
denotes |
6 |
T12040 |
44505-44506 |
-RRB- |
denotes |
) |
T12041 |
44507-44510 |
VBD |
denotes |
was |
T12042 |
44522-44525 |
IN |
denotes |
for |
T12043 |
44526-44530 |
DT |
denotes |
each |
T12044 |
44531-44539 |
NN |
denotes |
position |
T12045 |
44540-44542 |
IN |
denotes |
in |
T12046 |
44543-44546 |
DT |
denotes |
the |
T12047 |
44547-44556 |
NN |
denotes |
alignment |
T12048 |
44557-44562 |
VBG |
denotes |
using |
T12049 |
44563-44568 |
NN |
denotes |
alpro |
T12050 |
44569-44570 |
-LRB- |
denotes |
[ |
T12051 |
44570-44572 |
CD |
denotes |
51 |
T12052 |
44572-44573 |
-RRB- |
denotes |
] |
T12053 |
44573-44574 |
. |
denotes |
. |
T12054 |
44574-44733 |
sentence |
denotes |
To determine the number of transcriptional isoforms for each gene, we examined the sim4 output for every matching cDNA in decreasing order of number of exons. |
T12055 |
44575-44577 |
TO |
denotes |
To |
T12056 |
44578-44587 |
VB |
denotes |
determine |
T12057 |
44645-44653 |
VBD |
denotes |
examined |
T12058 |
44588-44591 |
DT |
denotes |
the |
T12059 |
44592-44598 |
NN |
denotes |
number |
T12060 |
44599-44601 |
IN |
denotes |
of |
T12061 |
44602-44617 |
JJ |
denotes |
transcriptional |
T12062 |
44618-44626 |
NNS |
denotes |
isoforms |
T12063 |
44627-44630 |
IN |
denotes |
for |
T12064 |
44631-44635 |
DT |
denotes |
each |
T12065 |
44636-44640 |
NN |
denotes |
gene |
T12066 |
44640-44642 |
, |
denotes |
, |
T12067 |
44642-44644 |
PRP |
denotes |
we |
T12068 |
44654-44657 |
DT |
denotes |
the |
T12069 |
44663-44669 |
NN |
denotes |
output |
T12070 |
44658-44662 |
NN |
denotes |
sim4 |
T12071 |
44670-44673 |
IN |
denotes |
for |
T12072 |
44674-44679 |
DT |
denotes |
every |
T12073 |
44689-44693 |
NN |
denotes |
cDNA |
T12074 |
44680-44688 |
VBG |
denotes |
matching |
T12075 |
44694-44696 |
IN |
denotes |
in |
T12076 |
44697-44707 |
JJ |
denotes |
decreasing |
T12077 |
44708-44713 |
NN |
denotes |
order |
T12078 |
44714-44716 |
IN |
denotes |
of |
T12079 |
44717-44723 |
NN |
denotes |
number |
T12080 |
44724-44726 |
IN |
denotes |
of |
T12081 |
44727-44732 |
NNS |
denotes |
exons |
T12082 |
44732-44733 |
. |
denotes |
. |
T12083 |
44733-44899 |
sentence |
denotes |
The first cDNA was counted as one splice form, and for each subsequent cDNA, we determined whether exon structure was mutually exclusive to isoforms already counted. |
T12084 |
44734-44737 |
DT |
denotes |
The |
T12085 |
44744-44748 |
NN |
denotes |
cDNA |
T12086 |
44738-44743 |
JJ |
denotes |
first |
T12087 |
44753-44760 |
VBN |
denotes |
counted |
T12088 |
44749-44752 |
VBD |
denotes |
was |
T12089 |
44761-44763 |
IN |
denotes |
as |
T12090 |
44764-44767 |
CD |
denotes |
one |
T12091 |
44775-44779 |
NN |
denotes |
form |
T12092 |
44768-44774 |
NN |
denotes |
splice |
T12093 |
44779-44781 |
, |
denotes |
, |
T12094 |
44781-44784 |
CC |
denotes |
and |
T12095 |
44785-44788 |
IN |
denotes |
for |
T12096 |
44814-44824 |
VBD |
denotes |
determined |
T12097 |
44789-44793 |
DT |
denotes |
each |
T12098 |
44805-44809 |
NN |
denotes |
cDNA |
T12099 |
44794-44804 |
JJ |
denotes |
subsequent |
T12100 |
44809-44811 |
, |
denotes |
, |
T12101 |
44811-44813 |
PRP |
denotes |
we |
T12102 |
44825-44832 |
IN |
denotes |
whether |
T12103 |
44848-44851 |
VBD |
denotes |
was |
T12104 |
44833-44837 |
NN |
denotes |
exon |
T12105 |
44838-44847 |
NN |
denotes |
structure |
T12106 |
44852-44860 |
RB |
denotes |
mutually |
T12107 |
44861-44870 |
JJ |
denotes |
exclusive |
T12108 |
44871-44873 |
IN |
denotes |
to |
T12109 |
44874-44882 |
NNS |
denotes |
isoforms |
T12110 |
44883-44890 |
RB |
denotes |
already |
T12111 |
44891-44898 |
VBN |
denotes |
counted |
T12112 |
44898-44899 |
. |
denotes |
. |
T12113 |
44899-45058 |
sentence |
denotes |
We were conservative in our definition of mutually exclusive, and thus our count represents the minimum number of isoforms represented in the cDNA collection. |
T12114 |
44900-44902 |
PRP |
denotes |
We |
T12115 |
44903-44907 |
VBD |
denotes |
were |
T12116 |
44908-44920 |
JJ |
denotes |
conservative |
T12117 |
44921-44923 |
IN |
denotes |
in |
T12118 |
44924-44927 |
PRP$ |
denotes |
our |
T12119 |
44928-44938 |
NN |
denotes |
definition |
T12120 |
44939-44941 |
IN |
denotes |
of |
T12121 |
44942-44950 |
RB |
denotes |
mutually |
T12122 |
44951-44960 |
JJ |
denotes |
exclusive |
T12123 |
44960-44962 |
, |
denotes |
, |
T12124 |
44962-44965 |
CC |
denotes |
and |
T12125 |
44966-44970 |
RB |
denotes |
thus |
T12126 |
44981-44991 |
VBZ |
denotes |
represents |
T12127 |
44971-44974 |
PRP$ |
denotes |
our |
T12128 |
44975-44980 |
NN |
denotes |
count |
T12129 |
44992-44995 |
DT |
denotes |
the |
T12130 |
45004-45010 |
NN |
denotes |
number |
T12131 |
44996-45003 |
JJ |
denotes |
minimum |
T12132 |
45011-45013 |
IN |
denotes |
of |
T12133 |
45014-45022 |
NNS |
denotes |
isoforms |
T12134 |
45023-45034 |
VBN |
denotes |
represented |
T12135 |
45035-45037 |
IN |
denotes |
in |
T12136 |
45038-45041 |
DT |
denotes |
the |
T12137 |
45047-45057 |
NN |
denotes |
collection |
T12138 |
45042-45046 |
NN |
denotes |
cDNA |
T12139 |
45057-45058 |
. |
denotes |
. |
T12269 |
45060-45062 |
NN |
denotes |
RT |
T12270 |
45063-45066 |
NN |
denotes |
PCR |
T12271 |
45062-45063 |
HYPH |
denotes |
- |
T12272 |
45066-45195 |
sentence |
denotes |
The olfactory epithelia were dissected from three adult female C57BL/6 mice, including tissues attached to the skull and septum. |
T12273 |
45067-45070 |
DT |
denotes |
The |
T12274 |
45081-45090 |
NNS |
denotes |
epithelia |
T12275 |
45071-45080 |
JJ |
denotes |
olfactory |
T12276 |
45096-45105 |
VBN |
denotes |
dissected |
T12277 |
45091-45095 |
VBD |
denotes |
were |
T12278 |
45106-45110 |
IN |
denotes |
from |
T12279 |
45111-45116 |
CD |
denotes |
three |
T12280 |
45138-45142 |
NNS |
denotes |
mice |
T12281 |
45117-45122 |
JJ |
denotes |
adult |
T12282 |
45123-45129 |
JJ |
denotes |
female |
T12283 |
45130-45135 |
NN |
denotes |
C57BL |
T12284 |
45135-45136 |
HYPH |
denotes |
/ |
T12285 |
45136-45137 |
CD |
denotes |
6 |
T12286 |
45142-45144 |
, |
denotes |
, |
T12287 |
45144-45153 |
VBG |
denotes |
including |
T12288 |
45154-45161 |
NNS |
denotes |
tissues |
T12289 |
45162-45170 |
VBN |
denotes |
attached |
T12290 |
45171-45173 |
IN |
denotes |
to |
T12291 |
45174-45177 |
DT |
denotes |
the |
T12292 |
45178-45183 |
NN |
denotes |
skull |
T12293 |
45184-45187 |
CC |
denotes |
and |
T12294 |
45188-45194 |
NN |
denotes |
septum |
T12295 |
45194-45195 |
. |
denotes |
. |
T12296 |
45195-45308 |
sentence |
denotes |
RNA was isolated using the Qiagen RNeasy midi kit (Qiagen, Valencia, CA, USA), including a DNase treatment step. |
T12297 |
45196-45199 |
NN |
denotes |
RNA |
T12298 |
45204-45212 |
VBN |
denotes |
isolated |
T12299 |
45200-45203 |
VBD |
denotes |
was |
T12300 |
45213-45218 |
VBG |
denotes |
using |
T12301 |
45219-45222 |
DT |
denotes |
the |
T12302 |
45242-45245 |
NN |
denotes |
kit |
T12303 |
45223-45229 |
NNP |
denotes |
Qiagen |
T12304 |
45230-45236 |
NNP |
denotes |
RNeasy |
T12305 |
45237-45241 |
NN |
denotes |
midi |
T12306 |
45246-45247 |
-LRB- |
denotes |
( |
T12307 |
45247-45253 |
NNP |
denotes |
Qiagen |
T12308 |
45253-45255 |
, |
denotes |
, |
T12309 |
45255-45263 |
NNP |
denotes |
Valencia |
T12310 |
45263-45265 |
, |
denotes |
, |
T12311 |
45265-45267 |
NNP |
denotes |
CA |
T12312 |
45267-45269 |
, |
denotes |
, |
T12313 |
45269-45272 |
NNP |
denotes |
USA |
T12314 |
45272-45273 |
-RRB- |
denotes |
) |
T12315 |
45273-45275 |
, |
denotes |
, |
T12316 |
45275-45284 |
VBG |
denotes |
including |
T12317 |
45285-45286 |
DT |
denotes |
a |
T12318 |
45303-45307 |
NN |
denotes |
step |
T12319 |
45287-45292 |
NN |
denotes |
DNase |
T12320 |
45293-45302 |
NN |
denotes |
treatment |
T12321 |
45307-45308 |
. |
denotes |
. |
T12322 |
45308-45537 |
sentence |
denotes |
First-strand cDNA was produced from 2.5 μg of RNA in a volume of 50 μl using random hexamers and Invitrogen's Superscript II reverse transcriptase (Invitrogen, Carlsbad, CA, USA), according to the manufacturer's recommendations. |
T12323 |
45309-45314 |
JJ |
denotes |
First |
T12324 |
45315-45321 |
NN |
denotes |
strand |
T12325 |
45314-45315 |
HYPH |
denotes |
- |
T12326 |
45322-45326 |
NN |
denotes |
cDNA |
T12327 |
45331-45339 |
VBN |
denotes |
produced |
T12328 |
45327-45330 |
VBD |
denotes |
was |
T12329 |
45340-45344 |
IN |
denotes |
from |
T12330 |
45345-45348 |
CD |
denotes |
2.5 |
T12331 |
45349-45351 |
NNS |
denotes |
μg |
T12332 |
45352-45354 |
IN |
denotes |
of |
T12333 |
45355-45358 |
NN |
denotes |
RNA |
T12334 |
45359-45361 |
IN |
denotes |
in |
T12335 |
45362-45363 |
DT |
denotes |
a |
T12336 |
45364-45370 |
NN |
denotes |
volume |
T12337 |
45371-45373 |
IN |
denotes |
of |
T12338 |
45374-45376 |
CD |
denotes |
50 |
T12339 |
45377-45379 |
NNS |
denotes |
μl |
T12340 |
45380-45385 |
VBG |
denotes |
using |
T12341 |
45386-45392 |
JJ |
denotes |
random |
T12342 |
45393-45401 |
NNS |
denotes |
hexamers |
T12343 |
45402-45405 |
CC |
denotes |
and |
T12344 |
45406-45416 |
NNP |
denotes |
Invitrogen |
T12345 |
45442-45455 |
NN |
denotes |
transcriptase |
T12346 |
45416-45418 |
POS |
denotes |
's |
T12347 |
45419-45430 |
NN |
denotes |
Superscript |
T12348 |
45431-45433 |
CD |
denotes |
II |
T12349 |
45434-45441 |
JJ |
denotes |
reverse |
T12350 |
45456-45457 |
-LRB- |
denotes |
( |
T12351 |
45457-45467 |
NNP |
denotes |
Invitrogen |
T12352 |
45467-45469 |
, |
denotes |
, |
T12353 |
45469-45477 |
NNP |
denotes |
Carlsbad |
T12354 |
45477-45479 |
, |
denotes |
, |
T12355 |
45479-45481 |
NNP |
denotes |
CA |
T12356 |
45481-45483 |
, |
denotes |
, |
T12357 |
45483-45486 |
NNP |
denotes |
USA |
T12358 |
45486-45487 |
-RRB- |
denotes |
) |
T12359 |
45487-45489 |
, |
denotes |
, |
T12360 |
45489-45498 |
VBG |
denotes |
according |
T12361 |
45499-45501 |
IN |
denotes |
to |
T12362 |
45502-45505 |
DT |
denotes |
the |
T12363 |
45506-45518 |
NN |
denotes |
manufacturer |
T12364 |
45521-45536 |
NNS |
denotes |
recommendations |
T12365 |
45518-45520 |
POS |
denotes |
's |
T12366 |
45536-45537 |
. |
denotes |
. |
T12367 |
45537-45626 |
sentence |
denotes |
One-twenty-fifth of the resulting cDNA was used as template in subsequent PCR reactions. |
T12368 |
45538-45541 |
CD |
denotes |
One |
T12369 |
45549-45554 |
NN |
denotes |
fifth |
T12370 |
45541-45542 |
HYPH |
denotes |
- |
T12371 |
45542-45548 |
CD |
denotes |
twenty |
T12372 |
45548-45549 |
HYPH |
denotes |
- |
T12373 |
45581-45585 |
VBN |
denotes |
used |
T12374 |
45555-45557 |
IN |
denotes |
of |
T12375 |
45558-45561 |
DT |
denotes |
the |
T12376 |
45572-45576 |
NN |
denotes |
cDNA |
T12377 |
45562-45571 |
VBG |
denotes |
resulting |
T12378 |
45577-45580 |
VBD |
denotes |
was |
T12379 |
45586-45588 |
IN |
denotes |
as |
T12380 |
45589-45597 |
NN |
denotes |
template |
T12381 |
45598-45600 |
IN |
denotes |
in |
T12382 |
45601-45611 |
JJ |
denotes |
subsequent |
T12383 |
45616-45625 |
NNS |
denotes |
reactions |
T12384 |
45612-45615 |
NN |
denotes |
PCR |
T12385 |
45625-45626 |
. |
denotes |
. |
T12386 |
45626-45814 |
sentence |
denotes |
PCR amplification biased towards class I olfactory receptors was performed using degenerate primers P26 [17] and classI_R1 (5'-GGRTTIADIRYIGGNGG-3') with an annealing temperature of 44°C. |
T12387 |
45627-45630 |
NN |
denotes |
PCR |
T12388 |
45631-45644 |
NN |
denotes |
amplification |
T12389 |
45692-45701 |
VBN |
denotes |
performed |
T12390 |
45645-45651 |
JJ |
denotes |
biased |
T12391 |
45652-45659 |
IN |
denotes |
towards |
T12392 |
45660-45665 |
NN |
denotes |
class |
T12393 |
45678-45687 |
NNS |
denotes |
receptors |
T12394 |
45666-45667 |
CD |
denotes |
I |
T12395 |
45668-45677 |
JJ |
denotes |
olfactory |
T12396 |
45688-45691 |
VBD |
denotes |
was |
T12397 |
45702-45707 |
VBG |
denotes |
using |
T12398 |
45708-45718 |
JJ |
denotes |
degenerate |
T12399 |
45727-45730 |
NN |
denotes |
P26 |
T12400 |
45719-45726 |
NNS |
denotes |
primers |
T12401 |
45731-45732 |
-LRB- |
denotes |
[ |
T12402 |
45732-45734 |
CD |
denotes |
17 |
T12403 |
45734-45735 |
-RRB- |
denotes |
] |
T12404 |
45736-45739 |
CC |
denotes |
and |
T12405 |
45740-45749 |
NN |
denotes |
classI_R1 |
T12406 |
45750-45751 |
-LRB- |
denotes |
( |
T12407 |
45754-45771 |
NN |
denotes |
GGRTTIADIRYIGGNGG |
T12408 |
45751-45752 |
CD |
denotes |
5 |
T12409 |
45752-45753 |
SYM |
denotes |
' |
T12410 |
45753-45754 |
HYPH |
denotes |
- |
T12411 |
45771-45772 |
HYPH |
denotes |
- |
T12412 |
45772-45773 |
CD |
denotes |
3 |
T12413 |
45773-45774 |
SYM |
denotes |
' |
T12414 |
45774-45775 |
-RRB- |
denotes |
) |
T12415 |
45776-45780 |
IN |
denotes |
with |
T12416 |
45781-45783 |
DT |
denotes |
an |
T12417 |
45794-45805 |
NN |
denotes |
temperature |
T12418 |
45784-45793 |
JJ |
denotes |
annealing |
T12419 |
45806-45808 |
IN |
denotes |
of |
T12420 |
45809-45811 |
CD |
denotes |
44 |
T12421 |
45811-45813 |
NNS |
denotes |
°C |
T12422 |
45813-45814 |
. |
denotes |
. |
T12423 |
45814-45905 |
sentence |
denotes |
The product was cloned (TA cloning kit, Invitrogen), and individual clones were sequenced. |
T12424 |
45815-45818 |
DT |
denotes |
The |
T12425 |
45819-45826 |
NN |
denotes |
product |
T12426 |
45831-45837 |
VBN |
denotes |
cloned |
T12427 |
45827-45830 |
VBD |
denotes |
was |
T12428 |
45838-45839 |
-LRB- |
denotes |
( |
T12429 |
45855-45865 |
NNP |
denotes |
Invitrogen |
T12430 |
45839-45841 |
NN |
denotes |
TA |
T12431 |
45850-45853 |
NN |
denotes |
kit |
T12432 |
45842-45849 |
NN |
denotes |
cloning |
T12433 |
45853-45855 |
, |
denotes |
, |
T12434 |
45865-45866 |
-RRB- |
denotes |
) |
T12435 |
45866-45868 |
, |
denotes |
, |
T12436 |
45868-45871 |
CC |
denotes |
and |
T12437 |
45872-45882 |
JJ |
denotes |
individual |
T12438 |
45883-45889 |
NNS |
denotes |
clones |
T12439 |
45895-45904 |
VBN |
denotes |
sequenced |
T12440 |
45890-45894 |
VBD |
denotes |
were |
T12441 |
45904-45905 |
. |
denotes |
. |
T12442 |
45905-46029 |
sentence |
denotes |
Specific PCR primers used to confirm expression of individual olfactory receptor genes are given in Additional data file 1. |
T12443 |
45906-45914 |
JJ |
denotes |
Specific |
T12444 |
45919-45926 |
NNS |
denotes |
primers |
T12445 |
45915-45918 |
NN |
denotes |
PCR |
T12446 |
45997-46002 |
VBN |
denotes |
given |
T12447 |
45927-45931 |
VBN |
denotes |
used |
T12448 |
45932-45934 |
TO |
denotes |
to |
T12449 |
45935-45942 |
VB |
denotes |
confirm |
T12450 |
45943-45953 |
NN |
denotes |
expression |
T12451 |
45954-45956 |
IN |
denotes |
of |
T12452 |
45957-45967 |
JJ |
denotes |
individual |
T12453 |
45987-45992 |
NNS |
denotes |
genes |
T12454 |
45968-45977 |
JJ |
denotes |
olfactory |
T12455 |
45978-45986 |
NN |
denotes |
receptor |
T12456 |
45993-45996 |
VBP |
denotes |
are |
T12457 |
46003-46005 |
IN |
denotes |
in |
T12458 |
46006-46016 |
JJ |
denotes |
Additional |
T12459 |
46022-46026 |
NN |
denotes |
file |
T12460 |
46017-46021 |
NNS |
denotes |
data |
T12461 |
46027-46028 |
CD |
denotes |
1 |
T12462 |
46028-46029 |
. |
denotes |
. |
T12463 |
46029-46128 |
sentence |
denotes |
Each PCR product was sequenced to confirm that the expected gene and no others had been amplified. |
T12464 |
46030-46034 |
DT |
denotes |
Each |
T12465 |
46039-46046 |
NN |
denotes |
product |
T12466 |
46035-46038 |
NN |
denotes |
PCR |
T12467 |
46051-46060 |
VBN |
denotes |
sequenced |
T12468 |
46047-46050 |
VBD |
denotes |
was |
T12469 |
46061-46063 |
TO |
denotes |
to |
T12470 |
46064-46071 |
VB |
denotes |
confirm |
T12471 |
46072-46076 |
IN |
denotes |
that |
T12472 |
46118-46127 |
VBN |
denotes |
amplified |
T12473 |
46077-46080 |
DT |
denotes |
the |
T12474 |
46090-46094 |
NN |
denotes |
gene |
T12475 |
46081-46089 |
VBN |
denotes |
expected |
T12476 |
46095-46098 |
CC |
denotes |
and |
T12477 |
46099-46101 |
DT |
denotes |
no |
T12478 |
46102-46108 |
NNS |
denotes |
others |
T12479 |
46109-46112 |
VBD |
denotes |
had |
T12480 |
46113-46117 |
VBN |
denotes |
been |
T12481 |
46127-46128 |
. |
denotes |
. |
T12482 |
46128-46287 |
sentence |
denotes |
Control reactions on a template made by omitting reverse transcriptase gave no product, indicating that the RNA preparation was uncontaminated by genomic DNA. |
T12483 |
46129-46136 |
NN |
denotes |
Control |
T12484 |
46137-46146 |
NNS |
denotes |
reactions |
T12485 |
46200-46204 |
VBD |
denotes |
gave |
T12486 |
46147-46149 |
IN |
denotes |
on |
T12487 |
46150-46151 |
DT |
denotes |
a |
T12488 |
46152-46160 |
NN |
denotes |
template |
T12489 |
46161-46165 |
VBN |
denotes |
made |
T12490 |
46166-46168 |
IN |
denotes |
by |
T12491 |
46169-46177 |
VBG |
denotes |
omitting |
T12492 |
46178-46185 |
JJ |
denotes |
reverse |
T12493 |
46186-46199 |
NN |
denotes |
transcriptase |
T12494 |
46205-46207 |
DT |
denotes |
no |
T12495 |
46208-46215 |
NN |
denotes |
product |
T12496 |
46215-46217 |
, |
denotes |
, |
T12497 |
46217-46227 |
VBG |
denotes |
indicating |
T12498 |
46228-46232 |
IN |
denotes |
that |
T12499 |
46253-46256 |
VBD |
denotes |
was |
T12500 |
46233-46236 |
DT |
denotes |
the |
T12501 |
46241-46252 |
NN |
denotes |
preparation |
T12502 |
46237-46240 |
NN |
denotes |
RNA |
T12503 |
46257-46271 |
JJ |
denotes |
uncontaminated |
T12504 |
46272-46274 |
IN |
denotes |
by |
T12505 |
46275-46282 |
JJ |
denotes |
genomic |
T12506 |
46283-46286 |
NN |
denotes |
DNA |
T12507 |
46286-46287 |
. |
denotes |
. |
T12508 |
46287-46490 |
sentence |
denotes |
Relative transcript levels were estimated using real-time PCR according to Applied Biosystems' protocols, with magnesium concentration, primer pair and fluorescent probe given in Additional data file 2. |
T12509 |
46288-46296 |
JJ |
denotes |
Relative |
T12510 |
46308-46314 |
NNS |
denotes |
levels |
T12511 |
46297-46307 |
NN |
denotes |
transcript |
T12512 |
46320-46329 |
VBN |
denotes |
estimated |
T12513 |
46315-46319 |
VBD |
denotes |
were |
T12514 |
46330-46335 |
VBG |
denotes |
using |
T12515 |
46336-46340 |
JJ |
denotes |
real |
T12516 |
46341-46345 |
NN |
denotes |
time |
T12517 |
46340-46341 |
HYPH |
denotes |
- |
T12518 |
46346-46349 |
NN |
denotes |
PCR |
T12519 |
46350-46359 |
VBG |
denotes |
according |
T12520 |
46360-46362 |
IN |
denotes |
to |
T12521 |
46363-46370 |
NNP |
denotes |
Applied |
T12522 |
46371-46381 |
NNP |
denotes |
Biosystems |
T12523 |
46383-46392 |
NNS |
denotes |
protocols |
T12524 |
46381-46382 |
POS |
denotes |
' |
T12525 |
46392-46394 |
, |
denotes |
, |
T12526 |
46394-46398 |
IN |
denotes |
with |
T12527 |
46458-46463 |
VBN |
denotes |
given |
T12528 |
46399-46408 |
NN |
denotes |
magnesium |
T12529 |
46409-46422 |
NN |
denotes |
concentration |
T12530 |
46422-46424 |
, |
denotes |
, |
T12531 |
46424-46430 |
NN |
denotes |
primer |
T12532 |
46431-46435 |
NN |
denotes |
pair |
T12533 |
46436-46439 |
CC |
denotes |
and |
T12534 |
46440-46451 |
JJ |
denotes |
fluorescent |
T12535 |
46452-46457 |
NN |
denotes |
probe |
T12536 |
46464-46466 |
IN |
denotes |
in |
T12537 |
46467-46477 |
JJ |
denotes |
Additional |
T12538 |
46483-46487 |
NN |
denotes |
file |
T12539 |
46478-46482 |
NNS |
denotes |
data |
T12540 |
46488-46489 |
CD |
denotes |
2 |
T12541 |
46489-46490 |
. |
denotes |
. |
T12542 |
46490-46577 |
sentence |
denotes |
The increase in fluorescence during thermocycling was measured on an ABI PRISM 7900HT. |
T12543 |
46491-46494 |
DT |
denotes |
The |
T12544 |
46495-46503 |
NN |
denotes |
increase |
T12545 |
46545-46553 |
VBN |
denotes |
measured |
T12546 |
46504-46506 |
IN |
denotes |
in |
T12547 |
46507-46519 |
NN |
denotes |
fluorescence |
T12548 |
46520-46526 |
IN |
denotes |
during |
T12549 |
46527-46540 |
NN |
denotes |
thermocycling |
T12550 |
46541-46544 |
VBD |
denotes |
was |
T12551 |
46554-46556 |
IN |
denotes |
on |
T12552 |
46557-46559 |
DT |
denotes |
an |
T12553 |
46570-46576 |
NN |
denotes |
7900HT |
T12554 |
46560-46563 |
NN |
denotes |
ABI |
T12555 |
46564-46569 |
NN |
denotes |
PRISM |
T12556 |
46576-46577 |
. |
denotes |
. |
T12557 |
46577-46775 |
sentence |
denotes |
Standard curves were constructed for each primer pair using triplicate samples of mouse genomic DNA of nine known concentrations (range 0.01-100 ng, or about 3-30,000 copies of the haploid genome). |
T12558 |
46578-46586 |
JJ |
denotes |
Standard |
T12559 |
46587-46593 |
NNS |
denotes |
curves |
T12560 |
46599-46610 |
VBN |
denotes |
constructed |
T12561 |
46594-46598 |
VBD |
denotes |
were |
T12562 |
46611-46614 |
IN |
denotes |
for |
T12563 |
46615-46619 |
DT |
denotes |
each |
T12564 |
46627-46631 |
NN |
denotes |
pair |
T12565 |
46620-46626 |
NN |
denotes |
primer |
T12566 |
46632-46637 |
VBG |
denotes |
using |
T12567 |
46638-46648 |
NN |
denotes |
triplicate |
T12568 |
46649-46656 |
NNS |
denotes |
samples |
T12569 |
46657-46659 |
IN |
denotes |
of |
T12570 |
46660-46665 |
NN |
denotes |
mouse |
T12571 |
46674-46677 |
NN |
denotes |
DNA |
T12572 |
46666-46673 |
JJ |
denotes |
genomic |
T12573 |
46678-46680 |
IN |
denotes |
of |
T12574 |
46681-46685 |
CD |
denotes |
nine |
T12575 |
46692-46706 |
NNS |
denotes |
concentrations |
T12576 |
46686-46691 |
VBN |
denotes |
known |
T12577 |
46707-46708 |
-LRB- |
denotes |
( |
T12578 |
46723-46725 |
NNS |
denotes |
ng |
T12579 |
46708-46713 |
NN |
denotes |
range |
T12580 |
46714-46718 |
CD |
denotes |
0.01 |
T12581 |
46719-46722 |
CD |
denotes |
100 |
T12582 |
46718-46719 |
SYM |
denotes |
- |
T12583 |
46725-46727 |
, |
denotes |
, |
T12584 |
46727-46729 |
CC |
denotes |
or |
T12585 |
46730-46735 |
RB |
denotes |
about |
T12586 |
46738-46744 |
CD |
denotes |
30,000 |
T12587 |
46736-46737 |
CD |
denotes |
3 |
T12588 |
46737-46738 |
SYM |
denotes |
- |
T12589 |
46745-46751 |
NNS |
denotes |
copies |
T12590 |
46752-46754 |
IN |
denotes |
of |
T12591 |
46755-46758 |
DT |
denotes |
the |
T12592 |
46767-46773 |
NN |
denotes |
genome |
T12593 |
46759-46766 |
NN |
denotes |
haploid |
T12594 |
46773-46774 |
-RRB- |
denotes |
) |
T12595 |
46774-46775 |
. |
denotes |
. |
T12596 |
46775-47034 |
sentence |
denotes |
Relative expression level of each gene was determined by comparing the mean Ct (cycle where fluorescence reaches an arbitrary threshold value) obtained with six replicate samples of reverse-transcribed RNA to the standard curve for the corresponding primers. |
T12597 |
46776-46784 |
JJ |
denotes |
Relative |
T12598 |
46796-46801 |
NN |
denotes |
level |
T12599 |
46785-46795 |
NN |
denotes |
expression |
T12600 |
46819-46829 |
VBN |
denotes |
determined |
T12601 |
46802-46804 |
IN |
denotes |
of |
T12602 |
46805-46809 |
DT |
denotes |
each |
T12603 |
46810-46814 |
NN |
denotes |
gene |
T12604 |
46815-46818 |
VBD |
denotes |
was |
T12605 |
46830-46832 |
IN |
denotes |
by |
T12606 |
46833-46842 |
VBG |
denotes |
comparing |
T12607 |
46843-46846 |
DT |
denotes |
the |
T12608 |
46852-46854 |
NN |
denotes |
Ct |
T12609 |
46847-46851 |
JJ |
denotes |
mean |
T12610 |
46855-46856 |
-LRB- |
denotes |
( |
T12611 |
46856-46861 |
NN |
denotes |
cycle |
T12612 |
46862-46867 |
WRB |
denotes |
where |
T12613 |
46881-46888 |
VBZ |
denotes |
reaches |
T12614 |
46868-46880 |
NN |
denotes |
fluorescence |
T12615 |
46889-46891 |
DT |
denotes |
an |
T12616 |
46912-46917 |
NN |
denotes |
value |
T12617 |
46892-46901 |
JJ |
denotes |
arbitrary |
T12618 |
46902-46911 |
NN |
denotes |
threshold |
T12619 |
46917-46918 |
-RRB- |
denotes |
) |
T12620 |
46919-46927 |
VBN |
denotes |
obtained |
T12621 |
46928-46932 |
IN |
denotes |
with |
T12622 |
46933-46936 |
CD |
denotes |
six |
T12623 |
46947-46954 |
NNS |
denotes |
samples |
T12624 |
46937-46946 |
NN |
denotes |
replicate |
T12625 |
46955-46957 |
IN |
denotes |
of |
T12626 |
46958-46965 |
JJ |
denotes |
reverse |
T12627 |
46966-46977 |
JJ |
denotes |
transcribed |
T12628 |
46965-46966 |
HYPH |
denotes |
- |
T12629 |
46978-46981 |
NN |
denotes |
RNA |
T12630 |
46982-46984 |
IN |
denotes |
to |
T12631 |
46985-46988 |
DT |
denotes |
the |
T12632 |
46998-47003 |
NN |
denotes |
curve |
T12633 |
46989-46997 |
JJ |
denotes |
standard |
T12634 |
47004-47007 |
IN |
denotes |
for |
T12635 |
47008-47011 |
DT |
denotes |
the |
T12636 |
47026-47033 |
NNS |
denotes |
primers |
T12637 |
47012-47025 |
VBG |
denotes |
corresponding |
T12638 |
47033-47034 |
. |
denotes |
. |
T12639 |
47034-47137 |
sentence |
denotes |
Relative RNA levels of a housekeeping gene, ribosomal S16, were measured as previously described [52]. |
T12640 |
47035-47043 |
JJ |
denotes |
Relative |
T12641 |
47048-47054 |
NNS |
denotes |
levels |
T12642 |
47044-47047 |
NN |
denotes |
RNA |
T12643 |
47099-47107 |
VBN |
denotes |
measured |
T12644 |
47055-47057 |
IN |
denotes |
of |
T12645 |
47058-47059 |
DT |
denotes |
a |
T12646 |
47073-47077 |
NN |
denotes |
gene |
T12647 |
47060-47072 |
NN |
denotes |
housekeeping |
T12648 |
47077-47079 |
, |
denotes |
, |
T12649 |
47079-47088 |
JJ |
denotes |
ribosomal |
T12650 |
47089-47092 |
NN |
denotes |
S16 |
T12651 |
47092-47094 |
, |
denotes |
, |
T12652 |
47094-47098 |
VBD |
denotes |
were |
T12653 |
47108-47110 |
IN |
denotes |
as |
T12654 |
47122-47131 |
VBN |
denotes |
described |
T12655 |
47111-47121 |
RB |
denotes |
previously |
T12656 |
47132-47133 |
-LRB- |
denotes |
[ |
T12657 |
47133-47135 |
CD |
denotes |
52 |
T12658 |
47135-47136 |
-RRB- |
denotes |
] |
T12659 |
47136-47137 |
. |
denotes |
. |
T12660 |
47137-47280 |
sentence |
denotes |
Control reactions on template prepared by omitting reverse transcriptase amplified at a relative level of 0.03 ± 0.01 ng or less in each case. |
T12661 |
47138-47145 |
NN |
denotes |
Control |
T12662 |
47146-47155 |
NNS |
denotes |
reactions |
T12663 |
47211-47220 |
VBN |
denotes |
amplified |
T12664 |
47156-47158 |
IN |
denotes |
on |
T12665 |
47159-47167 |
NN |
denotes |
template |
T12666 |
47168-47176 |
VBN |
denotes |
prepared |
T12667 |
47177-47179 |
IN |
denotes |
by |
T12668 |
47180-47188 |
VBG |
denotes |
omitting |
T12669 |
47189-47196 |
JJ |
denotes |
reverse |
T12670 |
47197-47210 |
NN |
denotes |
transcriptase |
T12671 |
47221-47223 |
IN |
denotes |
at |
T12672 |
47224-47225 |
DT |
denotes |
a |
T12673 |
47235-47240 |
NN |
denotes |
level |
T12674 |
47226-47234 |
JJ |
denotes |
relative |
T12675 |
47241-47243 |
IN |
denotes |
of |
T12676 |
47244-47248 |
CD |
denotes |
0.03 |
T12677 |
47251-47255 |
CD |
denotes |
0.01 |
T12678 |
47249-47250 |
SYM |
denotes |
± |
T12679 |
47256-47258 |
NNS |
denotes |
ng |
T12680 |
47259-47261 |
CC |
denotes |
or |
T12681 |
47262-47266 |
JJR |
denotes |
less |
T12682 |
47267-47269 |
IN |
denotes |
in |
T12683 |
47270-47274 |
DT |
denotes |
each |
T12684 |
47275-47279 |
NN |
denotes |
case |
T12685 |
47279-47280 |
. |
denotes |
. |
T12686 |
47280-47408 |
sentence |
denotes |
Expression measurements of the seven genes were normalized for each mouse so that S16 levels were equal to 1 (arbitrary units). |
T12687 |
47281-47291 |
NN |
denotes |
Expression |
T12688 |
47292-47304 |
NNS |
denotes |
measurements |
T12689 |
47329-47339 |
VBN |
denotes |
normalized |
T12690 |
47305-47307 |
IN |
denotes |
of |
T12691 |
47308-47311 |
DT |
denotes |
the |
T12692 |
47318-47323 |
NNS |
denotes |
genes |
T12693 |
47312-47317 |
CD |
denotes |
seven |
T12694 |
47324-47328 |
VBD |
denotes |
were |
T12695 |
47340-47343 |
IN |
denotes |
for |
T12696 |
47344-47348 |
DT |
denotes |
each |
T12697 |
47349-47354 |
NN |
denotes |
mouse |
T12698 |
47355-47357 |
IN |
denotes |
so |
T12699 |
47374-47378 |
VBD |
denotes |
were |
T12700 |
47358-47362 |
IN |
denotes |
that |
T12701 |
47363-47366 |
NN |
denotes |
S16 |
T12702 |
47367-47373 |
NNS |
denotes |
levels |
T12703 |
47379-47384 |
JJ |
denotes |
equal |
T12704 |
47385-47387 |
IN |
denotes |
to |
T12705 |
47388-47389 |
CD |
denotes |
1 |
T12706 |
47390-47391 |
-LRB- |
denotes |
( |
T12707 |
47401-47406 |
NNS |
denotes |
units |
T12708 |
47391-47400 |
JJ |
denotes |
arbitrary |
T12709 |
47406-47407 |
-RRB- |
denotes |
) |
T12710 |
47407-47408 |
. |
denotes |
. |
T12805 |
47410-47412 |
FW |
denotes |
In |
T12806 |
47413-47417 |
FW |
denotes |
situ |
T12807 |
47418-47431 |
NN |
denotes |
hybridization |
T12808 |
47431-47547 |
sentence |
denotes |
Coronal sections were cut from the olfactory epithelia of an adult mouse (Figure 4) and a young (P6) C57BL/6 mouse. |
T12809 |
47432-47439 |
JJ |
denotes |
Coronal |
T12810 |
47440-47448 |
NNS |
denotes |
sections |
T12811 |
47454-47457 |
VBN |
denotes |
cut |
T12812 |
47449-47453 |
VBD |
denotes |
were |
T12813 |
47458-47462 |
IN |
denotes |
from |
T12814 |
47463-47466 |
DT |
denotes |
the |
T12815 |
47477-47486 |
NNS |
denotes |
epithelia |
T12816 |
47467-47476 |
JJ |
denotes |
olfactory |
T12817 |
47487-47489 |
IN |
denotes |
of |
T12818 |
47490-47492 |
DT |
denotes |
an |
T12819 |
47499-47504 |
NN |
denotes |
mouse |
T12820 |
47493-47498 |
JJ |
denotes |
adult |
T12821 |
47505-47506 |
-LRB- |
denotes |
( |
T12822 |
47506-47512 |
NN |
denotes |
Figure |
T12823 |
47513-47514 |
CD |
denotes |
4 |
T12824 |
47514-47515 |
-RRB- |
denotes |
) |
T12825 |
47516-47519 |
CC |
denotes |
and |
T12826 |
47520-47521 |
DT |
denotes |
a |
T12827 |
47541-47546 |
NN |
denotes |
mouse |
T12828 |
47522-47527 |
JJ |
denotes |
young |
T12829 |
47528-47529 |
-LRB- |
denotes |
( |
T12830 |
47529-47531 |
NN |
denotes |
P6 |
T12831 |
47531-47532 |
-RRB- |
denotes |
) |
T12832 |
47533-47538 |
NN |
denotes |
C57BL |
T12833 |
47538-47539 |
HYPH |
denotes |
/ |
T12834 |
47539-47540 |
CD |
denotes |
6 |
T12835 |
47546-47547 |
. |
denotes |
. |
T12836 |
47547-47742 |
sentence |
denotes |
RNA in situ hybridization was carried out as described previously [15,53] with digoxigenin-labeled antisense riboprobes specific for the 3' UTRs of genes AY318555 (0.5 kb) and AY317365 (0.5 kb). |
T12837 |
47548-47551 |
NN |
denotes |
RNA |
T12838 |
47560-47573 |
NN |
denotes |
hybridization |
T12839 |
47552-47554 |
FW |
denotes |
in |
T12840 |
47555-47559 |
FW |
denotes |
situ |
T12841 |
47578-47585 |
VBN |
denotes |
carried |
T12842 |
47574-47577 |
VBD |
denotes |
was |
T12843 |
47586-47589 |
RP |
denotes |
out |
T12844 |
47590-47592 |
IN |
denotes |
as |
T12845 |
47593-47602 |
VBN |
denotes |
described |
T12846 |
47603-47613 |
RB |
denotes |
previously |
T12847 |
47614-47615 |
-LRB- |
denotes |
[ |
T12848 |
47618-47620 |
CD |
denotes |
53 |
T12849 |
47615-47617 |
CD |
denotes |
15 |
T12850 |
47617-47618 |
, |
denotes |
, |
T12851 |
47620-47621 |
-RRB- |
denotes |
] |
T12852 |
47622-47626 |
IN |
denotes |
with |
T12853 |
47627-47638 |
NN |
denotes |
digoxigenin |
T12854 |
47639-47646 |
VBN |
denotes |
labeled |
T12855 |
47638-47639 |
HYPH |
denotes |
- |
T12856 |
47657-47667 |
NNS |
denotes |
riboprobes |
T12857 |
47647-47656 |
JJ |
denotes |
antisense |
T12858 |
47668-47676 |
JJ |
denotes |
specific |
T12859 |
47677-47680 |
IN |
denotes |
for |
T12860 |
47681-47684 |
DT |
denotes |
the |
T12861 |
47688-47692 |
NNS |
denotes |
UTRs |
T12862 |
47685-47686 |
CD |
denotes |
3 |
T12863 |
47686-47687 |
SYM |
denotes |
' |
T12864 |
47693-47695 |
IN |
denotes |
of |
T12865 |
47696-47701 |
NNS |
denotes |
genes |
T12866 |
47702-47710 |
NN |
denotes |
AY318555 |
T12867 |
47711-47712 |
-LRB- |
denotes |
( |
T12868 |
47716-47718 |
NN |
denotes |
kb |
T12869 |
47712-47715 |
CD |
denotes |
0.5 |
T12870 |
47718-47719 |
-RRB- |
denotes |
) |
T12871 |
47720-47723 |
CC |
denotes |
and |
T12872 |
47724-47732 |
NN |
denotes |
AY317365 |
T12873 |
47733-47734 |
-LRB- |
denotes |
( |
T12874 |
47738-47740 |
NN |
denotes |
kb |
T12875 |
47734-47737 |
CD |
denotes |
0.5 |
T12876 |
47740-47741 |
-RRB- |
denotes |
) |
T12877 |
47741-47742 |
. |
denotes |
. |
T12878 |
47742-47976 |
sentence |
denotes |
Riboprobe sequences were generated by PCR using primer pairs 5'-TCTTCCAAACCTGGACCCCCC-3' and 5'-ATCTCTCCAGCACCTTACTTG-3' for AY318555 and primer pairs 5'-TAAGATGTAAGTGATAATTTAGATTACAGG-3' and 5'-TTTCTGCCTCAGCTATGACAG-3' for AY317365. |
T12879 |
47743-47752 |
NN |
denotes |
Riboprobe |
T12880 |
47753-47762 |
NNS |
denotes |
sequences |
T12881 |
47768-47777 |
VBN |
denotes |
generated |
T12882 |
47763-47767 |
VBD |
denotes |
were |
T12883 |
47778-47780 |
IN |
denotes |
by |
T12884 |
47781-47784 |
NN |
denotes |
PCR |
T12885 |
47785-47790 |
VBG |
denotes |
using |
T12886 |
47791-47797 |
NN |
denotes |
primer |
T12887 |
47798-47803 |
NNS |
denotes |
pairs |
T12888 |
47804-47805 |
CD |
denotes |
5 |
T12889 |
47807-47828 |
NN |
denotes |
TCTTCCAAACCTGGACCCCCC |
T12890 |
47805-47806 |
SYM |
denotes |
' |
T12891 |
47806-47807 |
HYPH |
denotes |
- |
T12892 |
47828-47829 |
HYPH |
denotes |
- |
T12893 |
47829-47830 |
CD |
denotes |
3 |
T12894 |
47830-47831 |
SYM |
denotes |
' |
T12895 |
47832-47835 |
CC |
denotes |
and |
T12896 |
47836-47837 |
CD |
denotes |
5 |
T12897 |
47839-47860 |
NN |
denotes |
ATCTCTCCAGCACCTTACTTG |
T12898 |
47837-47838 |
SYM |
denotes |
' |
T12899 |
47838-47839 |
HYPH |
denotes |
- |
T12900 |
47860-47861 |
HYPH |
denotes |
- |
T12901 |
47861-47862 |
CD |
denotes |
3 |
T12902 |
47862-47863 |
SYM |
denotes |
' |
T12903 |
47864-47867 |
IN |
denotes |
for |
T12904 |
47868-47876 |
NN |
denotes |
AY318555 |
T12905 |
47877-47880 |
CC |
denotes |
and |
T12906 |
47881-47887 |
NN |
denotes |
primer |
T12907 |
47888-47893 |
NNS |
denotes |
pairs |
T12908 |
47894-47895 |
CD |
denotes |
5 |
T12909 |
47897-47927 |
NN |
denotes |
TAAGATGTAAGTGATAATTTAGATTACAGG |
T12910 |
47895-47896 |
SYM |
denotes |
' |
T12911 |
47896-47897 |
HYPH |
denotes |
- |
T12912 |
47927-47928 |
HYPH |
denotes |
- |
T12913 |
47928-47929 |
CD |
denotes |
3 |
T12914 |
47929-47930 |
SYM |
denotes |
' |
T12915 |
47931-47934 |
CC |
denotes |
and |
T12916 |
47935-47936 |
CD |
denotes |
5 |
T12917 |
47938-47959 |
NN |
denotes |
TTTCTGCCTCAGCTATGACAG |
T12918 |
47936-47937 |
SYM |
denotes |
' |
T12919 |
47937-47938 |
HYPH |
denotes |
- |
T12920 |
47959-47960 |
HYPH |
denotes |
- |
T12921 |
47960-47961 |
CD |
denotes |
3 |
T12922 |
47961-47962 |
SYM |
denotes |
' |
T12923 |
47963-47966 |
IN |
denotes |
for |
T12924 |
47967-47975 |
NN |
denotes |
AY317365 |
T12925 |
47975-47976 |
. |
denotes |
. |
T12926 |
47976-48093 |
sentence |
denotes |
Hybridization was carried out in 50% formamide at 65°C, and slides were washed at high stringency (65°C, 0.2 × SSC). |
T12927 |
47977-47990 |
NN |
denotes |
Hybridization |
T12928 |
47995-48002 |
VBN |
denotes |
carried |
T12929 |
47991-47994 |
VBD |
denotes |
was |
T12930 |
48003-48006 |
RP |
denotes |
out |
T12931 |
48007-48009 |
IN |
denotes |
in |
T12932 |
48010-48012 |
CD |
denotes |
50 |
T12933 |
48012-48013 |
NN |
denotes |
% |
T12934 |
48014-48023 |
NN |
denotes |
formamide |
T12935 |
48024-48026 |
IN |
denotes |
at |
T12936 |
48027-48029 |
CD |
denotes |
65 |
T12937 |
48029-48031 |
NNS |
denotes |
°C |
T12938 |
48031-48033 |
, |
denotes |
, |
T12939 |
48033-48036 |
CC |
denotes |
and |
T12940 |
48037-48043 |
NNS |
denotes |
slides |
T12941 |
48049-48055 |
VBN |
denotes |
washed |
T12942 |
48044-48048 |
VBD |
denotes |
were |
T12943 |
48056-48058 |
IN |
denotes |
at |
T12944 |
48059-48063 |
JJ |
denotes |
high |
T12945 |
48064-48074 |
NN |
denotes |
stringency |
T12946 |
48075-48076 |
-LRB- |
denotes |
( |
T12947 |
48078-48080 |
NNS |
denotes |
°C |
T12948 |
48076-48078 |
CD |
denotes |
65 |
T12949 |
48080-48082 |
, |
denotes |
, |
T12950 |
48082-48085 |
CD |
denotes |
0.2 |
T12951 |
48088-48091 |
NN |
denotes |
SSC |
T12952 |
48086-48087 |
SYM |
denotes |
× |
T12953 |
48091-48092 |
-RRB- |
denotes |
) |
T12954 |
48092-48093 |
. |
denotes |
. |
T12955 |
48093-48225 |
sentence |
denotes |
The probes each hybridize to only one band on a Southern blot, indicating that each probe only detects one olfactory receptor gene. |
T12956 |
48094-48097 |
DT |
denotes |
The |
T12957 |
48098-48104 |
NNS |
denotes |
probes |
T12958 |
48110-48119 |
VBP |
denotes |
hybridize |
T12959 |
48105-48109 |
DT |
denotes |
each |
T12960 |
48120-48122 |
IN |
denotes |
to |
T12961 |
48123-48127 |
RB |
denotes |
only |
T12962 |
48132-48136 |
NN |
denotes |
band |
T12963 |
48128-48131 |
CD |
denotes |
one |
T12964 |
48137-48139 |
IN |
denotes |
on |
T12965 |
48140-48141 |
DT |
denotes |
a |
T12966 |
48151-48155 |
NN |
denotes |
blot |
T12967 |
48142-48150 |
NNP |
denotes |
Southern |
T12968 |
48155-48157 |
, |
denotes |
, |
T12969 |
48157-48167 |
VBG |
denotes |
indicating |
T12970 |
48168-48172 |
IN |
denotes |
that |
T12971 |
48189-48196 |
VBZ |
denotes |
detects |
T12972 |
48173-48177 |
DT |
denotes |
each |
T12973 |
48178-48183 |
NN |
denotes |
probe |
T12974 |
48184-48188 |
RB |
denotes |
only |
T12975 |
48197-48200 |
CD |
denotes |
one |
T12976 |
48220-48224 |
NN |
denotes |
gene |
T12977 |
48201-48210 |
JJ |
denotes |
olfactory |
T12978 |
48211-48219 |
NN |
denotes |
receptor |
T12979 |
48224-48225 |
. |
denotes |
. |
T12980 |
48225-48400 |
sentence |
denotes |
BLAST analyses show that the AY318555 probe is unique in Celera's mouse genome assembly (Release 13), and that the AY317365 probe is similar to only one other genomic region. |
T12981 |
48226-48231 |
NN |
denotes |
BLAST |
T12982 |
48232-48240 |
NNS |
denotes |
analyses |
T12983 |
48241-48245 |
VBP |
denotes |
show |
T12984 |
48246-48250 |
IN |
denotes |
that |
T12985 |
48270-48272 |
VBZ |
denotes |
is |
T12986 |
48251-48254 |
DT |
denotes |
the |
T12987 |
48264-48269 |
NN |
denotes |
probe |
T12988 |
48255-48263 |
NN |
denotes |
AY318555 |
T12989 |
48273-48279 |
JJ |
denotes |
unique |
T12990 |
48280-48282 |
IN |
denotes |
in |
T12991 |
48283-48289 |
NNP |
denotes |
Celera |
T12992 |
48305-48313 |
NN |
denotes |
assembly |
T12993 |
48289-48291 |
POS |
denotes |
's |
T12994 |
48292-48297 |
NN |
denotes |
mouse |
T12995 |
48298-48304 |
NN |
denotes |
genome |
T12996 |
48314-48315 |
-LRB- |
denotes |
( |
T12997 |
48315-48322 |
NN |
denotes |
Release |
T12998 |
48323-48325 |
CD |
denotes |
13 |
T12999 |
48325-48326 |
-RRB- |
denotes |
) |
T13000 |
48326-48328 |
, |
denotes |
, |
T13001 |
48328-48331 |
CC |
denotes |
and |
T13002 |
48332-48336 |
IN |
denotes |
that |
T13003 |
48356-48358 |
VBZ |
denotes |
is |
T13004 |
48337-48340 |
DT |
denotes |
the |
T13005 |
48350-48355 |
NN |
denotes |
probe |
T13006 |
48341-48349 |
NN |
denotes |
AY317365 |
T13007 |
48359-48366 |
JJ |
denotes |
similar |
T13008 |
48367-48369 |
IN |
denotes |
to |
T13009 |
48370-48374 |
RB |
denotes |
only |
T13010 |
48393-48399 |
NN |
denotes |
region |
T13011 |
48375-48378 |
CD |
denotes |
one |
T13012 |
48379-48384 |
JJ |
denotes |
other |
T13013 |
48385-48392 |
JJ |
denotes |
genomic |
T13014 |
48399-48400 |
. |
denotes |
. |
T13015 |
48400-48585 |
sentence |
denotes |
This potential cross-hybridizing region is over 10 Mb from the nearest olfactory receptor coding region and is thus highly unlikely to be included in any olfactory receptor transcript. |
T13016 |
48401-48405 |
DT |
denotes |
This |
T13017 |
48434-48440 |
NN |
denotes |
region |
T13018 |
48406-48415 |
JJ |
denotes |
potential |
T13019 |
48416-48433 |
JJ |
denotes |
cross-hybridizing |
T13020 |
48441-48443 |
VBZ |
denotes |
is |
T13021 |
48444-48448 |
IN |
denotes |
over |
T13022 |
48449-48451 |
CD |
denotes |
10 |
T13023 |
48452-48454 |
NNS |
denotes |
Mb |
T13024 |
48455-48459 |
IN |
denotes |
from |
T13025 |
48460-48463 |
DT |
denotes |
the |
T13026 |
48498-48504 |
NN |
denotes |
region |
T13027 |
48464-48471 |
JJS |
denotes |
nearest |
T13028 |
48472-48481 |
JJ |
denotes |
olfactory |
T13029 |
48482-48490 |
NN |
denotes |
receptor |
T13030 |
48491-48497 |
NN |
denotes |
coding |
T13031 |
48505-48508 |
CC |
denotes |
and |
T13032 |
48509-48511 |
VBZ |
denotes |
is |
T13033 |
48512-48516 |
RB |
denotes |
thus |
T13034 |
48517-48523 |
RB |
denotes |
highly |
T13035 |
48524-48532 |
JJ |
denotes |
unlikely |
T13036 |
48533-48535 |
TO |
denotes |
to |
T13037 |
48539-48547 |
VBN |
denotes |
included |
T13038 |
48536-48538 |
VB |
denotes |
be |
T13039 |
48548-48550 |
IN |
denotes |
in |
T13040 |
48551-48554 |
DT |
denotes |
any |
T13041 |
48574-48584 |
NN |
denotes |
transcript |
T13042 |
48555-48564 |
JJ |
denotes |
olfactory |
T13043 |
48565-48573 |
NN |
denotes |
receptor |
T13044 |
48584-48585 |
. |
denotes |
. |
T13045 |
48585-48688 |
sentence |
denotes |
Low-power images are composed of three overlapping micrographs (40×) assembled in Adobe Photoshop 7.0. |
T13046 |
48586-48589 |
JJ |
denotes |
Low |
T13047 |
48590-48595 |
NN |
denotes |
power |
T13048 |
48589-48590 |
HYPH |
denotes |
- |
T13049 |
48596-48602 |
NNS |
denotes |
images |
T13050 |
48607-48615 |
VBN |
denotes |
composed |
T13051 |
48603-48606 |
VBP |
denotes |
are |
T13052 |
48616-48618 |
IN |
denotes |
of |
T13053 |
48619-48624 |
CD |
denotes |
three |
T13054 |
48637-48648 |
NNS |
denotes |
micrographs |
T13055 |
48625-48636 |
VBG |
denotes |
overlapping |
T13056 |
48649-48650 |
-LRB- |
denotes |
( |
T13057 |
48650-48652 |
CD |
denotes |
40 |
T13058 |
48652-48653 |
SYM |
denotes |
× |
T13059 |
48653-48654 |
-RRB- |
denotes |
) |
T13060 |
48655-48664 |
VBN |
denotes |
assembled |
T13061 |
48665-48667 |
IN |
denotes |
in |
T13062 |
48668-48673 |
NNP |
denotes |
Adobe |
T13063 |
48674-48683 |
NN |
denotes |
Photoshop |
T13064 |
48684-48687 |
CD |
denotes |
7.0 |
T13065 |
48687-48688 |
. |
denotes |
. |
T13084 |
48712-48713 |
DT |
denotes |
A |
T13085 |
48714-48718 |
NN |
denotes |
list |
T13086 |
48846-48851 |
VBN |
denotes |
found |
T13087 |
48719-48721 |
IN |
denotes |
of |
T13088 |
48722-48725 |
DT |
denotes |
the |
T13089 |
48726-48733 |
NNS |
denotes |
primers |
T13090 |
48734-48738 |
VBN |
denotes |
used |
T13091 |
48739-48741 |
TO |
denotes |
to |
T13092 |
48742-48749 |
VB |
denotes |
confirm |
T13093 |
48750-48753 |
DT |
denotes |
the |
T13094 |
48754-48764 |
NN |
denotes |
expression |
T13095 |
48765-48767 |
IN |
denotes |
of |
T13096 |
48768-48777 |
JJ |
denotes |
olfactory |
T13097 |
48778-48786 |
NN |
denotes |
receptor |
T13098 |
48787-48792 |
NNS |
denotes |
genes |
T13099 |
48793-48795 |
IN |
denotes |
by |
T13100 |
48796-48798 |
NN |
denotes |
RT |
T13101 |
48799-48802 |
NN |
denotes |
PCR |
T13102 |
48798-48799 |
HYPH |
denotes |
- |
T13103 |
48803-48806 |
CC |
denotes |
and |
T13104 |
48807-48810 |
NN |
denotes |
PCR |
T13105 |
48811-48815 |
IN |
denotes |
from |
T13106 |
48816-48820 |
NN |
denotes |
cDNA |
T13107 |
48829-48838 |
NNS |
denotes |
templates |
T13108 |
48821-48828 |
NN |
denotes |
library |
T13109 |
48839-48842 |
MD |
denotes |
can |
T13110 |
48843-48845 |
VB |
denotes |
be |
T13111 |
48852-48854 |
IN |
denotes |
in |
T13112 |
48855-48865 |
JJ |
denotes |
Additional |
T13113 |
48871-48875 |
NN |
denotes |
file |
T13114 |
48866-48870 |
NNS |
denotes |
data |
T13115 |
48876-48877 |
CD |
denotes |
1 |
T13116 |
48877-48878 |
. |
denotes |
. |
T13117 |
48878-48969 |
sentence |
denotes |
The experimental conditions used for real-time PCR can be found in Additional data file 2. |
T13118 |
48879-48882 |
DT |
denotes |
The |
T13119 |
48896-48906 |
NNS |
denotes |
conditions |
T13120 |
48883-48895 |
JJ |
denotes |
experimental |
T13121 |
48937-48942 |
VBN |
denotes |
found |
T13122 |
48907-48911 |
VBN |
denotes |
used |
T13123 |
48912-48915 |
IN |
denotes |
for |
T13124 |
48916-48920 |
JJ |
denotes |
real |
T13125 |
48921-48925 |
NN |
denotes |
time |
T13126 |
48920-48921 |
HYPH |
denotes |
- |
T13127 |
48926-48929 |
NN |
denotes |
PCR |
T13128 |
48930-48933 |
MD |
denotes |
can |
T13129 |
48934-48936 |
VB |
denotes |
be |
T13130 |
48943-48945 |
IN |
denotes |
in |
T13131 |
48946-48956 |
JJ |
denotes |
Additional |
T13132 |
48962-48966 |
NN |
denotes |
file |
T13133 |
48957-48961 |
NNS |
denotes |
data |
T13134 |
48967-48968 |
CD |
denotes |
2 |
T13135 |
48968-48969 |
. |
denotes |
. |
T299 |
803-815 |
JJ |
denotes |
experimental |
T300 |
816-824 |
NN |
denotes |
evidence |
T10408 |
37811-37814 |
PRP$ |
denotes |
Our |
T10409 |
37815-37820 |
NN |
denotes |
study |
T10410 |
37825-37833 |
VBN |
denotes |
provided |
T10411 |
37821-37824 |
VBZ |
denotes |
has |
T10412 |
37834-37836 |
DT |
denotes |
an |
T10413 |
37861-37869 |
NN |
denotes |
resource |
T10414 |
37837-37846 |
JJ |
denotes |
olfactory |
T10415 |
37847-37855 |
NN |
denotes |
receptor |
T10416 |
37856-37860 |
NN |
denotes |
cDNA |
T10417 |
37870-37882 |
VBG |
denotes |
representing |
T10418 |
37883-37887 |
IN |
denotes |
over |
T10419 |
37888-37891 |
CD |
denotes |
one |
T10420 |
37891-37892 |
HYPH |
denotes |
- |
T10421 |
37892-37897 |
JJ |
denotes |
third |
T10422 |
37898-37900 |
IN |
denotes |
of |
T10423 |
37901-37904 |
DT |
denotes |
the |
T10424 |
37929-37935 |
NN |
denotes |
family |
T10425 |
37905-37914 |
JJ |
denotes |
olfactory |
T10426 |
37915-37923 |
NN |
denotes |
receptor |
T10427 |
37924-37928 |
NN |
denotes |
gene |
T10428 |
37935-37936 |
. |
denotes |
. |
T246 |
0-7 |
NN |
denotes |
Odorant |
T247 |
8-16 |
NN |
denotes |
receptor |
T248 |
0-151 |
sentence |
denotes |
Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels |
T249 |
17-26 |
VBN |
denotes |
expressed |
T250 |
36-40 |
NNS |
denotes |
tags |
T251 |
27-35 |
NN |
denotes |
sequence |
T252 |
41-52 |
VBP |
denotes |
demonstrate |
T253 |
53-62 |
JJ |
denotes |
olfactory |
T254 |
63-73 |
NN |
denotes |
expression |
T255 |
74-76 |
IN |
denotes |
of |
T256 |
77-81 |
IN |
denotes |
over |
T257 |
82-85 |
CD |
denotes |
400 |
T258 |
86-91 |
NNS |
denotes |
genes |
T259 |
91-93 |
, |
denotes |
, |
T260 |
93-102 |
JJ |
denotes |
extensive |
T261 |
113-121 |
NN |
denotes |
splicing |
T262 |
103-112 |
JJ |
denotes |
alternate |
T263 |
122-125 |
CC |
denotes |
and |
T264 |
126-133 |
JJ |
denotes |
unequal |
T265 |
145-151 |
NNS |
denotes |
levels |
T266 |
134-144 |
NN |
denotes |
expression |
T267 |
151-152 |
sentence |
denotes |
|
T11009 |
40392-40401 |
JJ |
denotes |
available |
T11010 |
40402-40409 |
IN |
denotes |
through |
T11011 |
40410-40415 |
NN |
denotes |
dbEST |
T11012 |
40416-40417 |
-LRB- |
denotes |
( |
T11013 |
40436-40444 |
NN |
denotes |
CB172832 |
T11014 |
40417-40424 |
NNP |
denotes |
Genbank |
T11015 |
40425-40435 |
NNS |
denotes |
accessions |
T11016 |
40444-40445 |
SYM |
denotes |
- |
T11017 |
40445-40453 |
NN |
denotes |
CB174569 |
T268 |
611-621 |
sentence |
denotes |
Background |
T269 |
611-621 |
NN |
denotes |
Background |
T270 |
621-703 |
sentence |
denotes |
The olfactory receptor gene family is one of the largest in the mammalian genome. |
T271 |
622-625 |
DT |
denotes |
The |
T272 |
650-656 |
NN |
denotes |
family |
T273 |
626-635 |
JJ |
denotes |
olfactory |
T274 |
636-644 |
NN |
denotes |
receptor |
T275 |
645-649 |
NN |
denotes |
gene |
T276 |
657-659 |
VBZ |
denotes |
is |
T277 |
660-663 |
CD |
denotes |
one |
T278 |
664-666 |
IN |
denotes |
of |
T279 |
667-670 |
DT |
denotes |
the |
T280 |
671-678 |
JJS |
denotes |
largest |
T281 |
679-681 |
IN |
denotes |
in |
T282 |
682-685 |
DT |
denotes |
the |
T283 |
696-702 |
NN |
denotes |
genome |
T284 |
686-695 |
JJ |
denotes |
mammalian |
T285 |
702-703 |
. |
denotes |
. |
T286 |
703-901 |
sentence |
denotes |
Previous computational analyses have identified approximately 1,500 mouse olfactory receptors, but experimental evidence confirming olfactory function is available for very few olfactory receptors. |
T287 |
704-712 |
JJ |
denotes |
Previous |
T288 |
727-735 |
NNS |
denotes |
analyses |
T289 |
713-726 |
JJ |
denotes |
computational |
T290 |
741-751 |
VBN |
denotes |
identified |
T291 |
736-740 |
VBP |
denotes |
have |
T292 |
752-765 |
RB |
denotes |
approximately |
T293 |
766-771 |
CD |
denotes |
1,500 |
T294 |
788-797 |
NNS |
denotes |
receptors |
T295 |
772-777 |
NN |
denotes |
mouse |
T296 |
778-787 |
JJ |
denotes |
olfactory |
T297 |
797-799 |
, |
denotes |
, |
T298 |
799-802 |
CC |
denotes |
but |
T6998 |
25214-25216 |
VBZ |
denotes |
is |
T10266 |
37510-37516 |
NN |
denotes |
mutant |
T10267 |
37482-37491 |
JJ |
denotes |
olfactory |
T10268 |
37492-37500 |
NN |
denotes |
receptor |
T10269 |
37501-37509 |
NN |
denotes |
deletion |
T10270 |
37517-37518 |
-LRB- |
denotes |
[ |
T10271 |
37518-37520 |
CD |
denotes |
45 |
T10272 |
37520-37521 |
-RRB- |
denotes |
] |
T10273 |
37521-37523 |
, |
denotes |
, |
T10274 |
37523-37525 |
PRP |
denotes |
it |
T10275 |
37529-37535 |
JJ |
denotes |
likely |
T10276 |
37536-37540 |
IN |
denotes |
that |
T10277 |
37576-37579 |
VBP |
denotes |
die |
T10278 |
37541-37545 |
JJS |
denotes |
most |
T10279 |
37568-37575 |
NNS |
denotes |
neurons |
T10280 |
37546-37556 |
NN |
denotes |
pseudogene |
T10281 |
37557-37567 |
VBG |
denotes |
expressing |
T10282 |
37556-37557 |
HYPH |
denotes |
- |
T10283 |
37580-37582 |
CC |
denotes |
or |
T10284 |
37583-37589 |
VBP |
denotes |
switch |
T10285 |
37590-37592 |
TO |
denotes |
to |
T10286 |
37593-37600 |
VB |
denotes |
express |
T10287 |
37601-37602 |
DT |
denotes |
a |
T10288 |
37632-37636 |
NN |
denotes |
gene |
T10289 |
37603-37612 |
JJ |
denotes |
different |
T10290 |
37613-37622 |
JJ |
denotes |
olfactory |
T10291 |
37623-37631 |
NN |
denotes |
receptor |
T10292 |
37636-37638 |
, |
denotes |
, |
T10293 |
37638-37645 |
VBG |
denotes |
leaving |
T10294 |
37646-37647 |
DT |
denotes |
a |
T10295 |
37654-37660 |
NN |
denotes |
number |
T10296 |
37648-37653 |
JJ |
denotes |
small |
T10297 |
37661-37663 |
IN |
denotes |
of |
T10298 |
37664-37674 |
NN |
denotes |
pseudogene |
T10299 |
37675-37685 |
VBG |
denotes |
expressing |
T10300 |
37674-37675 |
HYPH |
denotes |
- |
T10301 |
37686-37693 |
NNS |
denotes |
neurons |
T10302 |
37694-37696 |
IN |
denotes |
in |
T10303 |
37697-37702 |
JJ |
denotes |
adult |
T10304 |
37703-37707 |
NNS |
denotes |
mice |
T10305 |
37707-37709 |
, |
denotes |
, |
T10306 |
37709-37712 |
CC |
denotes |
but |
T10307 |
37713-37715 |
IN |
denotes |
at |
T10308 |
37716-37723 |
RB |
denotes |
greatly |
T10309 |
37724-37731 |
VBN |
denotes |
reduced |
T10310 |
37732-37738 |
NNS |
denotes |
levels |
T10311 |
37739-37747 |
VBN |
denotes |
compared |
T10312 |
37748-37750 |
IN |
denotes |
to |
T10313 |
37751-37758 |
NNS |
denotes |
neurons |
T10314 |
37759-37769 |
VBG |
denotes |
expressing |
T10315 |
37770-37776 |
JJ |
denotes |
intact |
R40 |
T338 |
T337 |
amod |
additional,receptors |
R41 |
T339 |
T337 |
amod |
olfactory,receptors |
R38 |
T336 |
T337 |
amod |
many,receptors |
R39 |
T337 |
T335 |
pobj |
receptors,for |
R29 |
T327 |
T323 |
dobj |
tags,obtain |
R31 |
T329 |
T314 |
punct |
", ",screened |
R32 |
T330 |
T314 |
advcl |
providing,screened |
R33 |
T331 |
T330 |
dobj |
evidence,providing |
R34 |
T332 |
T331 |
prep |
of,evidence |
R35 |
T333 |
T334 |
amod |
olfactory,function |
R36 |
T334 |
T332 |
pobj |
function,of |
R37 |
T335 |
T331 |
prep |
for,evidence |
R42 |
T340 |
T330 |
punct |
", ",providing |
R43 |
T341 |
T342 |
advmod |
as,as |
R44 |
T342 |
T330 |
cc |
as,providing |
R45 |
T343 |
T342 |
advmod |
well,as |
R46 |
T344 |
T330 |
conj |
identifying,providing |
R47 |
T345 |
T346 |
compound |
gene,structure |
R48 |
T346 |
T344 |
dobj |
structure,identifying |
R49 |
T347 |
T346 |
cc |
and,structure |
R50 |
T348 |
T349 |
amod |
putative,regions |
R51 |
T349 |
T346 |
conj |
regions,structure |
R52 |
T350 |
T349 |
compound |
promoter,regions |
R53 |
T351 |
T314 |
punct |
.,screened |
R54 |
T355 |
T356 |
nsubj |
We,identified |
R55 |
T357 |
T358 |
amod |
more,"1,200" |
R56 |
T358 |
T360 |
nummod |
"1,200",cDNAs |
R57 |
T359 |
T358 |
quantmod |
than,"1,200" |
R58 |
T360 |
T356 |
dobj |
cDNAs,identified |
R59 |
T361 |
T360 |
amod |
odorant,cDNAs |
R60 |
T362 |
T360 |
compound |
receptor,cDNAs |
R61 |
T363 |
T360 |
acl |
representing,cDNAs |
R62 |
T364 |
T365 |
amod |
more,400 |
R63 |
T365 |
T367 |
nummod |
400,genes |
R64 |
T366 |
T365 |
quantmod |
than,400 |
R65 |
T367 |
T363 |
dobj |
genes,representing |
R66 |
T368 |
T356 |
punct |
.,identified |
R67 |
T370 |
T371 |
advcl |
Using,find |
R68 |
T372 |
T373 |
amod |
real,time |
R69 |
T373 |
T375 |
compound |
time,PCR |
R70 |
T374 |
T373 |
punct |
-,time |
R71 |
T375 |
T370 |
dobj |
PCR,Using |
R72 |
T376 |
T377 |
aux |
to,confirm |
R73 |
T377 |
T370 |
advcl |
confirm,Using |
R74 |
T378 |
T379 |
compound |
expression,level |
R75 |
T379 |
T380 |
compound |
level,differences |
R76 |
T380 |
T377 |
dobj |
differences,confirm |
R77 |
T381 |
T380 |
acl |
suggested,differences |
R78 |
T382 |
T381 |
agent |
by,suggested |
R79 |
T383 |
T384 |
poss |
our,screen |
R80 |
T384 |
T382 |
pobj |
screen,by |
R81 |
T385 |
T371 |
punct |
", ",find |
R82 |
T386 |
T371 |
nsubj |
we,find |
R83 |
T387 |
T388 |
mark |
that,differ |
R84 |
T388 |
T371 |
ccomp |
differ,find |
R85 |
T389 |
T390 |
compound |
transcript,levels |
R86 |
T390 |
T388 |
nsubj |
levels,differ |
R87 |
T391 |
T390 |
prep |
in,levels |
R88 |
T392 |
T393 |
det |
the,epithelium |
R89 |
T393 |
T391 |
pobj |
epithelium,in |
R90 |
T394 |
T393 |
amod |
olfactory,epithelium |
R91 |
T395 |
T388 |
aux |
can,differ |
R92 |
T396 |
T388 |
prep |
between,differ |
R93 |
T397 |
T398 |
amod |
olfactory,receptors |
R94 |
T398 |
T396 |
pobj |
receptors,between |
R95 |
T399 |
T388 |
prep |
by,differ |
R96 |
T400 |
T401 |
advmod |
up,300-fold |
R97 |
T401 |
T399 |
pcomp |
300-fold,by |
R98 |
T402 |
T401 |
quantmod |
to,300-fold |
R99 |
T403 |
T371 |
punct |
.,find |
R100 |
T405 |
T406 |
nsubj |
Differences,are |
R101 |
T407 |
T405 |
prep |
for,Differences |
R102 |
T408 |
T409 |
nummod |
one,pair |
R103 |
T409 |
T407 |
pobj |
pair,for |
R104 |
T410 |
T409 |
compound |
gene,pair |
R105 |
T411 |
T406 |
advmod |
apparently,are |
R106 |
T412 |
T406 |
prep |
due,are |
R107 |
T413 |
T412 |
pcomp |
to,due |
R108 |
T414 |
T415 |
preconj |
both,numbers |
R109 |
T415 |
T412 |
pobj |
numbers,due |
R110 |
T416 |
T415 |
amod |
unequal,numbers |
R111 |
T417 |
T415 |
prep |
of,numbers |
R112 |
T418 |
T419 |
amod |
expressing,cells |
R113 |
T419 |
T417 |
pobj |
cells,of |
R114 |
T420 |
T415 |
cc |
and,numbers |
R115 |
T421 |
T422 |
amod |
unequal,levels |
R116 |
T422 |
T415 |
conj |
levels,numbers |
R117 |
T423 |
T422 |
compound |
transcript,levels |
R118 |
T424 |
T422 |
prep |
per,levels |
R119 |
T425 |
T426 |
amod |
expressing,cell |
R120 |
T426 |
T424 |
pobj |
cell,per |
R121 |
T427 |
T406 |
punct |
.,are |
R122 |
T429 |
T430 |
advmod |
At,two |
R123 |
T430 |
T432 |
nsubj |
two,exhibit |
R124 |
T431 |
T430 |
advmod |
least,two |
R125 |
T433 |
T430 |
punct |
-,two |
R126 |
T434 |
T430 |
quantmod |
thirds,two |
R127 |
T435 |
T430 |
prep |
of,two |
R128 |
T436 |
T437 |
amod |
olfactory,receptors |
R129 |
T437 |
T435 |
pobj |
receptors,of |
R130 |
T438 |
T439 |
amod |
multiple,variants |
R131 |
T439 |
T432 |
dobj |
variants,exhibit |
R132 |
T440 |
T439 |
amod |
transcriptional,variants |
R133 |
T441 |
T439 |
punct |
", ",variants |
R134 |
T442 |
T439 |
prep |
with,variants |
R135 |
T443 |
T444 |
amod |
alternative,isoforms |
R136 |
T444 |
T442 |
pobj |
isoforms,with |
R137 |
T445 |
T444 |
prep |
of,isoforms |
R138 |
T446 |
T447 |
preconj |
both,5 |
R139 |
T447 |
T448 |
nummod |
5,regions |
R140 |
T448 |
T445 |
pobj |
regions,of |
R141 |
T449 |
T447 |
punct |
',5 |
R142 |
T450 |
T447 |
cc |
and,5 |
R143 |
T451 |
T447 |
conj |
3,5 |
R144 |
T452 |
T451 |
punct |
',3 |
R145 |
T453 |
T448 |
amod |
untranslated,regions |
R146 |
T454 |
T432 |
punct |
.,exhibit |
R147 |
T456 |
T457 |
det |
Some,transcripts |
R148 |
T457 |
T458 |
nsubj |
transcripts,utilize |
R149 |
T459 |
T460 |
punct |
(,% |
R150 |
T460 |
T457 |
parataxis |
%,transcripts |
R151 |
T461 |
T460 |
nummod |
5,% |
R152 |
T462 |
T460 |
punct |
),% |
R153 |
T463 |
T464 |
compound |
splice,sites |
R154 |
T464 |
T458 |
dobj |
sites,utilize |
R155 |
T465 |
T464 |
prep |
within,sites |
R156 |
T466 |
T467 |
det |
the,region |
R157 |
T467 |
T465 |
pobj |
region,within |
R158 |
T468 |
T467 |
amod |
coding,region |
R159 |
T469 |
T458 |
punct |
", ",utilize |
R160 |
T470 |
T458 |
advcl |
contrary,utilize |
R161 |
T471 |
T470 |
prep |
to,contrary |
R162 |
T472 |
T473 |
det |
the,structure |
R163 |
T473 |
T471 |
pobj |
structure,to |
R164 |
T474 |
T473 |
amod |
stereotyped,structure |
R165 |
T475 |
T476 |
amod |
olfactory,receptor |
R166 |
T476 |
T477 |
compound |
receptor,gene |
R167 |
T477 |
T473 |
compound |
gene,structure |
R168 |
T478 |
T458 |
punct |
.,utilize |
R169 |
T480 |
T481 |
amod |
Most,transcripts |
R170 |
T481 |
T483 |
nsubj |
transcripts,encode |
R171 |
T482 |
T481 |
amod |
atypical,transcripts |
R172 |
T484 |
T483 |
amod |
nonfunctional,encode |
R173 |
T485 |
T483 |
amod |
olfactory,encode |
R174 |
T486 |
T483 |
dep |
receptors,encode |
R175 |
T487 |
T483 |
punct |
", ",encode |
R176 |
T488 |
T483 |
cc |
but,encode |
R177 |
T489 |
T490 |
aux |
can,increase |
R178 |
T490 |
T483 |
conj |
increase,encode |
R179 |
T491 |
T490 |
advmod |
occasionally,increase |
R180 |
T492 |
T493 |
compound |
receptor,diversity |
R181 |
T493 |
T490 |
dobj |
diversity,increase |
R182 |
T494 |
T483 |
punct |
.,encode |
R183 |
T498 |
T499 |
poss |
Our,collection |
R184 |
T499 |
T501 |
nsubj |
collection,confirms |
R185 |
T500 |
T499 |
compound |
cDNA,collection |
R186 |
T502 |
T503 |
amod |
olfactory,function |
R187 |
T503 |
T501 |
dobj |
function,confirms |
R188 |
T504 |
T503 |
prep |
of,function |
R189 |
T505 |
T506 |
quantmod |
over,one |
R190 |
T506 |
T504 |
pobj |
one,of |
R191 |
T507 |
T506 |
punct |
-,one |
R192 |
T508 |
T506 |
quantmod |
third,one |
R193 |
T509 |
T506 |
prep |
of,one |
R194 |
T510 |
T511 |
det |
the,receptors |
R195 |
T511 |
T509 |
pobj |
receptors,of |
R196 |
T512 |
T511 |
amod |
intact,receptors |
R197 |
T513 |
T511 |
nmod |
mouse,receptors |
R198 |
T514 |
T511 |
amod |
olfactory,receptors |
R199 |
T515 |
T501 |
punct |
.,confirms |
R200 |
T517 |
T518 |
nsubjpass |
Most,annotated |
R201 |
T519 |
T517 |
prep |
of,Most |
R202 |
T520 |
T521 |
det |
these,genes |
R203 |
T521 |
T519 |
pobj |
genes,of |
R204 |
T522 |
T518 |
auxpass |
were,annotated |
R205 |
T523 |
T518 |
advmod |
previously,annotated |
R206 |
T524 |
T518 |
prep |
as,annotated |
R207 |
T525 |
T526 |
amod |
olfactory,receptors |
R208 |
T526 |
T524 |
pobj |
receptors,as |
R209 |
T527 |
T518 |
prep |
based,annotated |
R210 |
T528 |
T529 |
advmod |
solely,on |
R211 |
T529 |
T527 |
prep |
on,based |
R212 |
T530 |
T531 |
compound |
sequence,similarity |
R213 |
T531 |
T529 |
pobj |
similarity,on |
R214 |
T532 |
T518 |
punct |
.,annotated |
R215 |
T534 |
T535 |
poss |
Our,finding |
R216 |
T535 |
T536 |
nsubj |
finding,is |
R217 |
T537 |
T538 |
mark |
that,have |
R218 |
T538 |
T535 |
acl |
have,finding |
R219 |
T539 |
T540 |
amod |
different,receptors |
R220 |
T540 |
T538 |
nsubj |
receptors,have |
R221 |
T541 |
T540 |
amod |
olfactory,receptors |
R222 |
T542 |
T543 |
amod |
different,levels |
R223 |
T543 |
T538 |
dobj |
levels,have |
R224 |
T544 |
T543 |
compound |
expression,levels |
R225 |
T545 |
T536 |
acomp |
intriguing,is |
R226 |
T546 |
T536 |
prep |
given,is |
R227 |
T547 |
T548 |
det |
the,regime |
R228 |
T548 |
T546 |
pobj |
regime,given |
R229 |
T549 |
T550 |
nummod |
one,neuron |
R230 |
T550 |
T548 |
nmod |
neuron,regime |
R231 |
T551 |
T550 |
punct |
-,neuron |
R232 |
T552 |
T550 |
punct |
", ",neuron |
R233 |
T553 |
T554 |
nummod |
one,gene |
R234 |
T554 |
T550 |
appos |
gene,neuron |
R235 |
T555 |
T554 |
punct |
-,gene |
R236 |
T556 |
T548 |
compound |
expression,regime |
R237 |
T557 |
T548 |
prep |
of,regime |
R238 |
T558 |
T559 |
amod |
olfactory,receptors |
R239 |
T559 |
T557 |
pobj |
receptors,of |
R240 |
T560 |
T536 |
punct |
.,is |
R241 |
T562 |
T563 |
nsubj |
We,provide |
R242 |
T564 |
T565 |
nummod |
5,region |
R243 |
T565 |
T568 |
compound |
region,sequences |
R244 |
T566 |
T564 |
punct |
',5 |
R245 |
T567 |
T565 |
amod |
untranslated,region |
R246 |
T568 |
T563 |
dobj |
sequences,provide |
R247 |
T569 |
T568 |
cc |
and,sequences |
R248 |
T570 |
T571 |
compound |
candidate,regions |
R249 |
T571 |
T568 |
conj |
regions,sequences |
R250 |
T572 |
T571 |
compound |
promoter,regions |
R251 |
T573 |
T568 |
prep |
for,sequences |
R252 |
T574 |
T575 |
amod |
more,300 |
R253 |
T575 |
T577 |
nummod |
300,receptors |
R254 |
T576 |
T575 |
quantmod |
than,300 |
R255 |
T577 |
T573 |
pobj |
receptors,for |
R256 |
T578 |
T577 |
amod |
olfactory,receptors |
R257 |
T579 |
T568 |
punct |
", ",sequences |
R258 |
T580 |
T581 |
amod |
valuable,resources |
R259 |
T581 |
T568 |
appos |
resources,sequences |
R260 |
T582 |
T581 |
prep |
for,resources |
R261 |
T583 |
T584 |
amod |
computational,motif |
R262 |
T584 |
T586 |
compound |
motif,searches |
R263 |
T585 |
T584 |
amod |
regulatory,motif |
R264 |
T586 |
T582 |
pobj |
searches,for |
R265 |
T587 |
T582 |
cc |
and,for |
R266 |
T588 |
T582 |
conj |
for,for |
R267 |
T589 |
T588 |
pcomp |
designing,for |
R268 |
T590 |
T591 |
amod |
olfactory,receptor |
R269 |
T591 |
T592 |
compound |
receptor,microarrays |
R270 |
T592 |
T589 |
dobj |
microarrays,designing |
R271 |
T593 |
T592 |
cc |
and,microarrays |
R272 |
T594 |
T595 |
amod |
other,probes |
R273 |
T595 |
T592 |
conj |
probes,microarrays |
R274 |
T596 |
T595 |
amod |
experimental,probes |
R275 |
T597 |
T563 |
punct |
.,provide |
R301 |
T278 |
T277 |
prep |
of,one |
R302 |
T279 |
T280 |
det |
the,largest |
R303 |
T280 |
T278 |
pobj |
largest,of |
R304 |
T281 |
T276 |
prep |
in,is |
R305 |
T282 |
T283 |
det |
the,genome |
R306 |
T283 |
T281 |
pobj |
genome,in |
R307 |
T284 |
T283 |
amod |
mammalian,genome |
R308 |
T285 |
T276 |
punct |
.,is |
R309 |
T287 |
T288 |
amod |
Previous,analyses |
R310 |
T288 |
T290 |
nsubj |
analyses,identified |
R311 |
T289 |
T288 |
amod |
computational,analyses |
R312 |
T291 |
T290 |
aux |
have,identified |
R313 |
T292 |
T293 |
advmod |
approximately,"1,500" |
R314 |
T293 |
T294 |
nummod |
"1,500",receptors |
R315 |
T294 |
T290 |
dobj |
receptors,identified |
R316 |
T295 |
T294 |
nmod |
mouse,receptors |
R317 |
T296 |
T294 |
amod |
olfactory,receptors |
R318 |
T297 |
T290 |
punct |
", ",identified |
R319 |
T298 |
T290 |
cc |
but,identified |
R320 |
T299 |
T300 |
amod |
experimental,evidence |
R321 |
T300 |
T301 |
nsubj |
evidence,is |
R326 |
T1203 |
T1204 |
det |
The,interaction |
R327 |
T1204 |
T1205 |
nsubj |
interaction,is |
R328 |
T1206 |
T1204 |
prep |
of,interaction |
R329 |
T1207 |
T1208 |
amod |
olfactory,receptors |
R330 |
T1208 |
T1206 |
pobj |
receptors,of |
R331 |
T1209 |
T1207 |
punct |
(,olfactory |
R332 |
T1210 |
T1207 |
cc |
or,olfactory |
R333 |
T1211 |
T1207 |
conj |
odorant,olfactory |
R334 |
T1212 |
T1208 |
punct |
),receptors |
R335 |
T1213 |
T1204 |
prep |
with,interaction |
R336 |
T1214 |
T1215 |
poss |
their,ligands |
R337 |
T1215 |
T1213 |
pobj |
ligands,with |
R338 |
T1216 |
T1215 |
compound |
odorant,ligands |
R339 |
T1217 |
T1218 |
det |
the,step |
R340 |
T1218 |
T1205 |
attr |
step,is |
R341 |
T1219 |
T1218 |
amod |
first,step |
R342 |
T1220 |
T1218 |
prep |
in,step |
R343 |
T1221 |
T1222 |
det |
a,pathway |
R344 |
T1222 |
T1220 |
pobj |
pathway,in |
R345 |
T1223 |
T1224 |
compound |
signal,transduction |
R346 |
T1224 |
T1222 |
compound |
transduction,pathway |
R347 |
T1225 |
T1226 |
dep |
that,results |
R348 |
T1226 |
T1222 |
relcl |
results,pathway |
R349 |
T1227 |
T1226 |
prep |
in,results |
R350 |
T1228 |
T1229 |
det |
the,perception |
R351 |
T1229 |
T1227 |
pobj |
perception,in |
R352 |
T1230 |
T1229 |
prep |
of,perception |
R353 |
T1231 |
T1230 |
pobj |
smell,of |
R354 |
T1232 |
T1205 |
punct |
.,is |
R355 |
T1234 |
T1235 |
det |
The,family |
R356 |
T1235 |
T1239 |
nsubj |
family,is |
R357 |
T1236 |
T1237 |
amod |
olfactory,receptor |
R358 |
T1237 |
T1238 |
compound |
receptor,gene |
R359 |
T1238 |
T1235 |
compound |
gene,family |
R360 |
T1240 |
T1239 |
attr |
one,is |
R361 |
T1241 |
T1240 |
prep |
of,one |
R362 |
T1242 |
T1243 |
det |
the,largest |
R363 |
T1243 |
T1241 |
pobj |
largest,of |
R364 |
T1244 |
T1243 |
prep |
in,largest |
R365 |
T1245 |
T1246 |
det |
the,genome |
R366 |
T1246 |
T1244 |
pobj |
genome,in |
R367 |
T1247 |
T1246 |
amod |
mammalian,genome |
R368 |
T1248 |
T1239 |
punct |
", ",is |
R369 |
T1249 |
T1239 |
advcl |
comprising,is |
R370 |
T1250 |
T1251 |
quantmod |
about,"1,500" |
R371 |
T1251 |
T1252 |
nummod |
"1,500",members |
R372 |
T1252 |
T1249 |
dobj |
members,comprising |
R373 |
T1253 |
T1249 |
prep |
in,comprising |
R374 |
T1254 |
T1255 |
det |
the,genome |
R375 |
T1255 |
T1253 |
pobj |
genome,in |
R376 |
T1256 |
T1255 |
compound |
mouse,genome |
R377 |
T1257 |
T1258 |
punct |
[,2 |
R378 |
T1258 |
T1239 |
parataxis |
2,is |
R379 |
T1259 |
T1258 |
nummod |
1,2 |
R380 |
T1260 |
T1258 |
punct |
",",2 |
R381 |
T1261 |
T1258 |
punct |
],2 |
R382 |
T1262 |
T1239 |
punct |
.,is |
R383 |
T1264 |
T1265 |
amod |
Olfactory,receptors |
R384 |
T1265 |
T1266 |
nsubjpass |
receptors,identified |
R385 |
T1267 |
T1266 |
auxpass |
were,identified |
R386 |
T1268 |
T1266 |
advmod |
originally,identified |
R387 |
T1269 |
T1266 |
prep |
in,identified |
R388 |
T1270 |
T1271 |
det |
an,experiment |
R389 |
T1271 |
T1269 |
pobj |
experiment,in |
R390 |
T1272 |
T1271 |
amod |
elegant,experiment |
R391 |
T1273 |
T1271 |
prep |
based,experiment |
R392 |
T1274 |
T1273 |
prep |
on,based |
R393 |
T1275 |
T1276 |
det |
the,hypothesis |
R394 |
T1276 |
T1274 |
pobj |
hypothesis,on |
R395 |
T1277 |
T1278 |
mark |
that,be |
R396 |
T1278 |
T1276 |
acl |
be,hypothesis |
R397 |
T1279 |
T1278 |
nsubj |
they,be |
R398 |
T1280 |
T1278 |
aux |
would,be |
R399 |
T1281 |
T1282 |
nummod |
seven,transmembrane |
R400 |
T1282 |
T1284 |
compound |
transmembrane,domain |
R401 |
T1283 |
T1282 |
punct |
-,transmembrane |
R402 |
T1284 |
T1286 |
compound |
domain,proteins |
R403 |
T1285 |
T1284 |
punct |
-,domain |
R404 |
T1286 |
T1278 |
attr |
proteins,be |
R405 |
T1287 |
T1286 |
acl |
encoded,proteins |
R406 |
T1288 |
T1287 |
agent |
by,encoded |
R407 |
T1289 |
T1290 |
det |
a,family |
R408 |
T1290 |
T1288 |
pobj |
family,by |
R409 |
T1291 |
T1290 |
amod |
large,family |
R410 |
T1292 |
T1290 |
punct |
", ",family |
R411 |
T1293 |
T1290 |
amod |
diverse,family |
R412 |
T1294 |
T1290 |
compound |
gene,family |
R413 |
T1295 |
T1296 |
poss |
whose,expression |
R414 |
T1296 |
T1297 |
dep |
expression,restricted |
R415 |
T1297 |
T1290 |
relcl |
restricted,family |
R416 |
T1298 |
T1297 |
auxpass |
is,restricted |
R417 |
T1299 |
T1297 |
prep |
to,restricted |
R418 |
T1300 |
T1301 |
det |
the,epithelium |
R419 |
T1301 |
T1299 |
pobj |
epithelium,to |
R420 |
T1302 |
T1301 |
amod |
olfactory,epithelium |
R421 |
T1303 |
T1304 |
punct |
[,3 |
R422 |
T1304 |
T1266 |
parataxis |
3,identified |
R423 |
T1305 |
T1304 |
punct |
],3 |
R424 |
T1306 |
T1266 |
punct |
.,identified |
R425 |
T1308 |
T1309 |
amod |
Subsequent,studies |
R426 |
T1309 |
T1310 |
nsubj |
studies,shown |
R427 |
T1311 |
T1310 |
aux |
have,shown |
R428 |
T1312 |
T1313 |
mark |
that,respond |
R429 |
T1313 |
T1310 |
ccomp |
respond,shown |
R430 |
T1314 |
T1313 |
nsubj |
some,respond |
R431 |
T1315 |
T1314 |
prep |
of,some |
R432 |
T1316 |
T1317 |
det |
these,receptors |
R433 |
T1317 |
T1315 |
pobj |
receptors,of |
R434 |
T1318 |
T1313 |
aux |
do,respond |
R435 |
T1319 |
T1313 |
advmod |
indeed,respond |
R436 |
T1320 |
T1313 |
prep |
to,respond |
R437 |
T1321 |
T1320 |
pobj |
odorants,to |
R438 |
T1322 |
T1313 |
cc |
and,respond |
R439 |
T1323 |
T1324 |
aux |
can,confer |
R440 |
T1324 |
T1313 |
conj |
confer,respond |
R441 |
T1325 |
T1326 |
det |
that,responsivity |
R442 |
T1326 |
T1324 |
dobj |
responsivity,confer |
R443 |
T1327 |
T1328 |
advmod |
when,expressed |
R444 |
T1328 |
T1324 |
advcl |
expressed,confer |
R445 |
T1329 |
T1328 |
prep |
in,expressed |
R446 |
T1330 |
T1331 |
amod |
heterologous,types |
R447 |
T1331 |
T1329 |
pobj |
types,in |
R448 |
T1332 |
T1331 |
compound |
cell,types |
R449 |
T1333 |
T1331 |
punct |
(,types |
R450 |
T1334 |
T1335 |
prep |
for,4 |
R451 |
T1335 |
T1331 |
appos |
4,types |
R452 |
T1336 |
T1334 |
pobj |
example,for |
R453 |
T1337 |
T1335 |
punct |
[,4 |
R454 |
T1338 |
T1328 |
punct |
],expressed |
R455 |
T1339 |
T1328 |
punct |
),expressed |
R456 |
T1340 |
T1310 |
punct |
.,shown |
R457 |
T1342 |
T1343 |
amod |
Recent,investigations |
R458 |
T1343 |
T1345 |
nsubj |
investigations,provided |
R459 |
T1344 |
T1343 |
amod |
computational,investigations |
R460 |
T1346 |
T1345 |
aux |
have,provided |
R461 |
T1347 |
T1348 |
det |
the,catalogs |
R462 |
T1348 |
T1345 |
dobj |
catalogs,provided |
R463 |
T1349 |
T1350 |
advmod |
almost,complete |
R464 |
T1350 |
T1348 |
amod |
complete,catalogs |
R465 |
T1351 |
T1352 |
amod |
human,6 |
R466 |
T1352 |
T1356 |
parataxis |
6,gene |
R467 |
T1353 |
T1352 |
punct |
[,6 |
R468 |
T1354 |
T1352 |
nummod |
5,6 |
R469 |
T1355 |
T1352 |
punct |
",",6 |
R470 |
T1356 |
T1348 |
compound |
gene,catalogs |
R471 |
T1357 |
T1352 |
punct |
],6 |
R472 |
T1358 |
T1352 |
cc |
and,6 |
R473 |
T1359 |
T1360 |
dep |
mouse,2 |
R474 |
T1360 |
T1352 |
conj |
2,6 |
R475 |
T1361 |
T1360 |
punct |
[,2 |
R476 |
T1362 |
T1360 |
nummod |
1,2 |
R477 |
T1363 |
T1360 |
punct |
",",2 |
R478 |
T1364 |
T1360 |
punct |
],2 |
R479 |
T1365 |
T1366 |
amod |
olfactory,receptor |
R480 |
T1366 |
T1356 |
compound |
receptor,gene |
R481 |
T1367 |
T1356 |
punct |
-,gene |
R482 |
T1368 |
T1345 |
punct |
.,provided |
R483 |
T1370 |
T1371 |
advmod |
However,based |
R484 |
T1372 |
T1371 |
punct |
", ",based |
R485 |
T1373 |
T1374 |
det |
the,assignment |
R486 |
T1374 |
T1371 |
nsubjpass |
assignment,based |
R487 |
T1375 |
T1374 |
prep |
of,assignment |
R488 |
T1376 |
T1375 |
pobj |
most,of |
R489 |
T1377 |
T1376 |
prep |
of,most |
R490 |
T1378 |
T1379 |
det |
these,genes |
R491 |
T1379 |
T1377 |
pobj |
genes,of |
R492 |
T1380 |
T1374 |
prep |
as,assignment |
R493 |
T1381 |
T1382 |
amod |
olfactory,receptors |
R494 |
T1382 |
T1380 |
pobj |
receptors,as |
R495 |
T1383 |
T1371 |
auxpass |
is,based |
R496 |
T1384 |
T1371 |
advmod |
solely,based |
R497 |
T1385 |
T1371 |
prep |
on,based |
R498 |
T1386 |
T1385 |
pobj |
similarity,on |
R499 |
T1387 |
T1386 |
prep |
to,similarity |
R500 |
T1388 |
T1387 |
pobj |
one,to |
R501 |
T1389 |
T1388 |
prep |
of,one |
R502 |
T1390 |
T1391 |
det |
a,number |
R503 |
T1391 |
T1389 |
pobj |
number,of |
R504 |
T1392 |
T1393 |
advmod |
relatively,small |
R505 |
T1393 |
T1391 |
amod |
small,number |
R506 |
T1394 |
T1391 |
prep |
of,number |
R507 |
T1395 |
T1396 |
advmod |
experimentally,confirmed |
R508 |
T1396 |
T1397 |
amod |
confirmed,receptors |
R509 |
T1397 |
T1394 |
pobj |
receptors,of |
R510 |
T1398 |
T1397 |
nmod |
mouse,receptors |
R511 |
T1399 |
T1397 |
amod |
olfactory,receptors |
R512 |
T1400 |
T1385 |
cc |
or,on |
R513 |
T1401 |
T1385 |
punct |
", ",on |
R514 |
T1402 |
T1403 |
advmod |
worse,on |
R515 |
T1403 |
T1385 |
conj |
on,on |
R516 |
T1404 |
T1403 |
punct |
", ",on |
R517 |
T1405 |
T1403 |
pobj |
similarity,on |
R518 |
T1406 |
T1405 |
prep |
to,similarity |
R519 |
T1407 |
T1408 |
det |
a,gene |
R520 |
T1408 |
T1406 |
pobj |
gene,to |
R521 |
T1409 |
T1410 |
dep |
that,defined |
R522 |
T1410 |
T1408 |
relcl |
defined,gene |
R523 |
T1411 |
T1410 |
prep |
in,defined |
R524 |
T1412 |
T1411 |
pobj |
turn,in |
R525 |
T1413 |
T1410 |
auxpass |
was,defined |
R526 |
T1414 |
T1410 |
prep |
as,defined |
R527 |
T1415 |
T1416 |
det |
an,receptor |
R528 |
T1416 |
T1414 |
pobj |
receptor,as |
R529 |
T1417 |
T1416 |
amod |
olfactory,receptor |
R530 |
T1418 |
T1419 |
advmod |
solely,by |
R531 |
T1419 |
T1410 |
prep |
by,defined |
R532 |
T1420 |
T1419 |
pobj |
similarity,by |
R533 |
T1421 |
T1371 |
punct |
.,based |
R534 |
T1423 |
T1424 |
mark |
While,is |
R535 |
T1424 |
T1430 |
advcl |
is,be |
R536 |
T1425 |
T1426 |
npadvmod |
similarity,based |
R537 |
T1426 |
T1428 |
amod |
based,annotation |
R538 |
T1427 |
T1426 |
punct |
-,based |
R539 |
T1428 |
T1424 |
nsubj |
annotation,is |
R540 |
T1429 |
T1428 |
compound |
genome,annotation |
R541 |
T1431 |
T1432 |
det |
a,method |
R542 |
T1432 |
T1424 |
attr |
method,is |
R543 |
T1433 |
T1432 |
amod |
good,method |
R544 |
T1434 |
T1432 |
amod |
initial,method |
R545 |
T1435 |
T1436 |
aux |
to,identify |
R546 |
T1436 |
T1432 |
advcl |
identify,method |
R547 |
T1437 |
T1436 |
dobj |
genes,identify |
R548 |
T1438 |
T1436 |
cc |
and,identify |
R549 |
T1439 |
T1436 |
conj |
predict,identify |
R550 |
T1440 |
T1441 |
poss |
their,function |
R551 |
T1441 |
T1439 |
dobj |
function,predict |
R552 |
T1442 |
T1430 |
punct |
", ",be |
R553 |
T1443 |
T1430 |
prep |
in,be |
R554 |
T1444 |
T1445 |
det |
some,cases |
R555 |
T1445 |
T1443 |
pobj |
cases,in |
R556 |
T1446 |
T1430 |
nsubj |
it,be |
R557 |
T1447 |
T1430 |
aux |
can,be |
R558 |
T1448 |
T1430 |
acomp |
misleading,be |
R559 |
T1449 |
T1430 |
punct |
", ",be |
R560 |
T1450 |
T1451 |
mark |
as,carry |
R561 |
T1451 |
T1430 |
advcl |
carry,be |
R562 |
T1452 |
T1451 |
nsubj |
genes,carry |
R563 |
T1453 |
T1452 |
prep |
of,genes |
R564 |
T1454 |
T1455 |
amod |
similar,sequence |
R565 |
T1455 |
T1453 |
pobj |
sequence,of |
R566 |
T1456 |
T1451 |
aux |
can,carry |
R567 |
T1457 |
T1451 |
prt |
out,carry |
R568 |
T1458 |
T1459 |
amod |
different,functions |
R569 |
T1459 |
T1451 |
dobj |
functions,carry |
R570 |
T1460 |
T1451 |
cc |
and,carry |
R571 |
T1461 |
T1462 |
auxpass |
be,expressed |
R572 |
T1462 |
T1451 |
conj |
expressed,carry |
R573 |
T1463 |
T1462 |
prep |
in,expressed |
R574 |
T1464 |
T1465 |
amod |
different,tissues |
R575 |
T1465 |
T1463 |
pobj |
tissues,in |
R576 |
T1466 |
T1465 |
punct |
(,tissues |
R577 |
T1467 |
T1468 |
prep |
for,family |
R578 |
T1468 |
T1465 |
appos |
family,tissues |
R579 |
T1469 |
T1467 |
pobj |
example,for |
R580 |
T1470 |
T1468 |
punct |
", ",family |
R581 |
T1471 |
T1468 |
det |
the,family |
R582 |
T1472 |
T1473 |
compound |
sugar,transporter |
R583 |
T1473 |
T1474 |
compound |
transporter,gene |
R584 |
T1474 |
T1468 |
compound |
gene,family |
R585 |
T1475 |
T1476 |
punct |
[,7 |
R586 |
T1476 |
T1462 |
parataxis |
7,expressed |
R587 |
T1477 |
T1476 |
punct |
],7 |
R588 |
T1478 |
T1430 |
punct |
),be |
R589 |
T1479 |
T1430 |
punct |
.,be |
R590 |
T1481 |
T1482 |
det |
A,subset |
R591 |
T1482 |
T1484 |
nsubj |
subset,appears |
R592 |
T1483 |
T1482 |
amod |
small,subset |
R593 |
T1485 |
T1482 |
prep |
of,subset |
R594 |
T1486 |
T1487 |
amod |
olfactory,receptors |
R595 |
T1487 |
T1485 |
pobj |
receptors,of |
R596 |
T1488 |
T1489 |
aux |
to,expressed |
R597 |
T1489 |
T1484 |
xcomp |
expressed,appears |
R598 |
T1490 |
T1489 |
auxpass |
be,expressed |
R599 |
T1491 |
T1489 |
prep |
in,expressed |
R600 |
T1492 |
T1493 |
amod |
non-olfactory,tissues |
R601 |
T1493 |
T1491 |
pobj |
tissues,in |
R602 |
T1494 |
T1493 |
punct |
", ",tissues |
R603 |
T1495 |
T1496 |
advmod |
principally,testis |
R604 |
T1496 |
T1493 |
appos |
testis,tissues |
R605 |
T1497 |
T1496 |
det |
the,testis |
R606 |
T1498 |
T1499 |
punct |
[,8 |
R607 |
T1499 |
T1496 |
parataxis |
8,testis |
R608 |
T1500 |
T1499 |
punct |
],8 |
R609 |
T1501 |
T1496 |
punct |
", ",testis |
R610 |
T1502 |
T1496 |
cc |
but,testis |
R611 |
T1503 |
T1502 |
advmod |
also,but |
R612 |
T1504 |
T1505 |
compound |
taste,tissues |
R613 |
T1505 |
T1496 |
conj |
tissues,testis |
R614 |
T1506 |
T1507 |
punct |
[,9 |
R615 |
T1507 |
T1505 |
parataxis |
9,tissues |
R616 |
T1508 |
T1507 |
punct |
],9 |
R617 |
T1509 |
T1505 |
punct |
", ",tissues |
R618 |
T1510 |
T1505 |
conj |
prostate,tissues |
R619 |
T1511 |
T1512 |
punct |
[,10 |
R620 |
T1512 |
T1510 |
parataxis |
10,prostate |
R621 |
T1513 |
T1512 |
punct |
],10 |
R622 |
T1514 |
T1510 |
punct |
", ",prostate |
R623 |
T1515 |
T1516 |
amod |
erythroid,cells |
R624 |
T1516 |
T1510 |
conj |
cells,prostate |
R625 |
T1517 |
T1518 |
punct |
[,11 |
R626 |
T1518 |
T1516 |
parataxis |
11,cells |
R627 |
T1519 |
T1518 |
punct |
],11 |
R628 |
T1520 |
T1516 |
punct |
", ",cells |
R629 |
T1521 |
T1516 |
conj |
notochord,cells |
R630 |
T1522 |
T1523 |
punct |
[,12 |
R631 |
T1523 |
T1521 |
parataxis |
12,notochord |
R632 |
T1524 |
T1523 |
punct |
],12 |
R633 |
T1525 |
T1521 |
cc |
and,notochord |
R634 |
T1526 |
T1527 |
advmod |
perhaps,tissues |
R635 |
T1527 |
T1521 |
conj |
tissues,notochord |
R636 |
T1528 |
T1527 |
amod |
other,tissues |
R637 |
T1529 |
T1484 |
punct |
.,appears |
R638 |
T1531 |
T1532 |
nsubj |
Expression,led |
R639 |
T1533 |
T1531 |
prep |
in,Expression |
R640 |
T1534 |
T1535 |
det |
the,testis |
R641 |
T1535 |
T1533 |
pobj |
testis,in |
R642 |
T1536 |
T1532 |
aux |
has,led |
R643 |
T1537 |
T1538 |
det |
some,investigators |
R644 |
T1538 |
T1532 |
dobj |
investigators,led |
R645 |
T1539 |
T1540 |
aux |
to,suggest |
R646 |
T1540 |
T1532 |
xcomp |
suggest,led |
R647 |
T1541 |
T1542 |
mark |
that,function |
R648 |
T1542 |
T1540 |
ccomp |
function,suggest |
R649 |
T1543 |
T1544 |
det |
a,subset |
R650 |
T1544 |
T1542 |
nsubj |
subset,function |
R651 |
T1545 |
T1544 |
prep |
of,subset |
R652 |
T1546 |
T1547 |
amod |
olfactory,receptors |
R653 |
T1547 |
T1545 |
pobj |
receptors,of |
R654 |
T1548 |
T1542 |
aux |
may,function |
R655 |
T1549 |
T1542 |
prep |
as,function |
R656 |
T1550 |
T1551 |
amod |
spermatid,chemoreceptors |
R657 |
T1551 |
T1549 |
pobj |
chemoreceptors,as |
R658 |
T1552 |
T1553 |
punct |
[,8 |
R659 |
T1553 |
T1540 |
parataxis |
8,suggest |
R660 |
T1554 |
T1553 |
punct |
],8 |
R661 |
T1555 |
T1532 |
punct |
.,led |
R662 |
T1557 |
T1558 |
amod |
Recent,studies |
R663 |
T1558 |
T1559 |
nsubj |
studies,indicate |
R664 |
T1560 |
T1558 |
prep |
of,studies |
R665 |
T1561 |
T1562 |
nummod |
one,receptor |
R666 |
T1562 |
T1560 |
pobj |
receptor,of |
R667 |
T1563 |
T1562 |
amod |
human,receptor |
R668 |
T1564 |
T1565 |
npadvmod |
testis,expressed |
R669 |
T1565 |
T1562 |
amod |
expressed,receptor |
R670 |
T1566 |
T1565 |
punct |
-,expressed |
R671 |
T1567 |
T1562 |
amod |
olfactory,receptor |
R672 |
T1568 |
T1569 |
mark |
that,function |
R673 |
T1569 |
T1559 |
ccomp |
function,indicate |
R674 |
T1570 |
T1569 |
nsubj |
it,function |
R675 |
T1571 |
T1569 |
aux |
does,function |
R676 |
T1572 |
T1569 |
advmod |
indeed,function |
R677 |
T1573 |
T1569 |
prep |
in,function |
R678 |
T1574 |
T1575 |
compound |
sperm,chemotaxis |
R679 |
T1575 |
T1573 |
pobj |
chemotaxis,in |
R680 |
T1576 |
T1577 |
punct |
[,13 |
R681 |
T1577 |
T1559 |
parataxis |
13,indicate |
R682 |
T1578 |
T1577 |
punct |
],13 |
R683 |
T1579 |
T1559 |
punct |
.,indicate |
R684 |
T1581 |
T1582 |
prep |
Due,embarked |
R685 |
T1583 |
T1581 |
pcomp |
to,Due |
R686 |
T1584 |
T1585 |
det |
the,paucity |
R687 |
T1585 |
T1581 |
pobj |
paucity,Due |
R688 |
T1586 |
T1585 |
prep |
of,paucity |
R689 |
T1587 |
T1588 |
amod |
experimental,evidence |
R690 |
T1588 |
T1586 |
pobj |
evidence,of |
R691 |
T1589 |
T1588 |
prep |
of,evidence |
R692 |
T1590 |
T1591 |
det |
the,function |
R693 |
T1591 |
T1589 |
pobj |
function,of |
R694 |
T1592 |
T1591 |
amod |
olfactory,function |
R695 |
T1593 |
T1591 |
prep |
of,function |
R696 |
T1594 |
T1595 |
amod |
most,genes |
R697 |
T1595 |
T1593 |
pobj |
genes,of |
R698 |
T1596 |
T1595 |
prep |
in,genes |
R699 |
T1597 |
T1598 |
det |
the,family |
R700 |
T1598 |
T1596 |
pobj |
family,in |
R701 |
T1599 |
T1585 |
cc |
and,paucity |
R702 |
T1600 |
T1585 |
conj |
suggestions,paucity |
R703 |
T1601 |
T1600 |
prep |
of,suggestions |
R704 |
T1602 |
T1603 |
amod |
extra-olfactory,roles |
R705 |
T1603 |
T1601 |
pobj |
roles,of |
R706 |
T1604 |
T1582 |
punct |
", ",embarked |
R707 |
T1605 |
T1582 |
nsubj |
we,embarked |
R708 |
T1606 |
T1582 |
prep |
on,embarked |
R709 |
T1607 |
T1608 |
det |
an,project |
R710 |
T1608 |
T1606 |
pobj |
project,on |
R711 |
T1609 |
T1610 |
amod |
olfactory,receptor |
R712 |
T1610 |
T1608 |
nmod |
receptor,project |
R713 |
T1611 |
T1612 |
amod |
expressed,tag |
R714 |
T1612 |
T1610 |
appos |
tag,receptor |
R715 |
T1613 |
T1612 |
compound |
sequence,tag |
R716 |
T1614 |
T1612 |
punct |
(,tag |
R717 |
T1615 |
T1612 |
appos |
EST,tag |
R718 |
T1616 |
T1608 |
punct |
),project |
R719 |
T1617 |
T1618 |
aux |
to,confirm |
R720 |
T1618 |
T1582 |
advcl |
confirm,embarked |
R721 |
T1619 |
T1620 |
amod |
olfactory,expression |
R722 |
T1620 |
T1618 |
dobj |
expression,confirm |
R723 |
T1621 |
T1620 |
amod |
epithelial,expression |
R724 |
T1622 |
T1620 |
prep |
of,expression |
R725 |
T1623 |
T1622 |
pobj |
hundreds,of |
R726 |
T1624 |
T1623 |
prep |
of,hundreds |
R727 |
T1625 |
T1626 |
compound |
mouse,genes |
R728 |
T1626 |
T1624 |
pobj |
genes,of |
R729 |
T1627 |
T1628 |
compound |
odorant,receptor |
R730 |
T1628 |
T1626 |
compound |
receptor,genes |
R731 |
T1629 |
T1582 |
punct |
.,embarked |
R732 |
T1631 |
T1632 |
prep |
Within,show |
R733 |
T1633 |
T1634 |
det |
the,epithelium |
R734 |
T1634 |
T1631 |
pobj |
epithelium,Within |
R735 |
T1635 |
T1634 |
amod |
olfactory,epithelium |
R736 |
T1636 |
T1632 |
punct |
", ",show |
R737 |
T1637 |
T1638 |
amod |
individual,genes |
R738 |
T1638 |
T1632 |
nsubj |
genes,show |
R739 |
T1639 |
T1640 |
amod |
olfactory,receptor |
R740 |
T1640 |
T1638 |
compound |
receptor,genes |
R741 |
T1641 |
T1642 |
det |
an,pattern |
R742 |
T1642 |
T1632 |
dobj |
pattern,show |
R743 |
T1643 |
T1642 |
amod |
intriguing,pattern |
R744 |
T1644 |
T1642 |
compound |
expression,pattern |
R745 |
T1645 |
T1632 |
punct |
.,show |
R746 |
T1647 |
T1648 |
det |
Each,receptor |
R747 |
T1648 |
T1650 |
nsubjpass |
receptor,expressed |
R748 |
T1649 |
T1648 |
amod |
olfactory,receptor |
R749 |
T1651 |
T1650 |
auxpass |
is,expressed |
R750 |
T1652 |
T1650 |
prep |
in,expressed |
R751 |
T1653 |
T1654 |
det |
a,subset |
R752 |
T1654 |
T1652 |
pobj |
subset,in |
R753 |
T1655 |
T1654 |
prep |
of,subset |
R754 |
T1656 |
T1655 |
pobj |
cells,of |
R755 |
T1657 |
T1650 |
prep |
in,expressed |
R756 |
T1658 |
T1657 |
pobj |
one,in |
R757 |
T1659 |
T1658 |
prep |
of,one |
R758 |
T1660 |
T1661 |
nummod |
four,zones |
R759 |
T1661 |
T1659 |
pobj |
zones,of |
R760 |
T1662 |
T1661 |
prep |
of,zones |
R761 |
T1663 |
T1664 |
det |
the,epithelium |
R762 |
T1664 |
T1662 |
pobj |
epithelium,of |
R763 |
T1665 |
T1666 |
punct |
[,15 |
R764 |
T1666 |
T1650 |
parataxis |
15,expressed |
R765 |
T1667 |
T1666 |
nummod |
14,15 |
R766 |
T1668 |
T1666 |
punct |
",",15 |
R767 |
T1669 |
T1666 |
punct |
],15 |
R768 |
T1670 |
T1650 |
punct |
.,expressed |
R769 |
T1672 |
T1673 |
advmod |
Furthermore,expresses |
R770 |
T1674 |
T1673 |
punct |
", ",expresses |
R771 |
T1675 |
T1676 |
det |
each,neuron |
R772 |
T1676 |
T1673 |
nsubj |
neuron,expresses |
R773 |
T1677 |
T1676 |
amod |
olfactory,neuron |
R774 |
T1678 |
T1679 |
advmod |
only,allele |
R775 |
T1679 |
T1673 |
dobj |
allele,expresses |
R776 |
T1680 |
T1679 |
nummod |
one,allele |
R777 |
T1681 |
T1682 |
punct |
[,16 |
R778 |
T1682 |
T1679 |
parataxis |
16,allele |
R779 |
T1683 |
T1682 |
punct |
],16 |
R780 |
T1684 |
T1679 |
prep |
of,allele |
R781 |
T1685 |
T1686 |
det |
a,gene |
R782 |
T1686 |
T1684 |
pobj |
gene,of |
R783 |
T1687 |
T1686 |
amod |
single,gene |
R784 |
T1688 |
T1689 |
amod |
olfactory,receptor |
R785 |
T1689 |
T1686 |
compound |
receptor,gene |
R786 |
T1690 |
T1691 |
punct |
[,18 |
R787 |
T1691 |
T1686 |
parataxis |
18,gene |
R788 |
T1692 |
T1691 |
nummod |
17,18 |
R789 |
T1693 |
T1691 |
punct |
",",18 |
R790 |
T1694 |
T1691 |
punct |
],18 |
R791 |
T1695 |
T1673 |
punct |
", ",expresses |
R792 |
T1696 |
T1673 |
cc |
and,expresses |
R793 |
T1697 |
T1698 |
det |
the,genes |
R794 |
T1698 |
T1702 |
nsubj |
genes,are |
R795 |
T1699 |
T1698 |
nmod |
remaining,genes |
R796 |
T1700 |
T1701 |
advmod |
approximately,"1,499" |
R797 |
T1701 |
T1698 |
nummod |
"1,499",genes |
R798 |
T1702 |
T1673 |
conj |
are,expresses |
R799 |
T1703 |
T1704 |
advmod |
transcriptionally,inactive |
R800 |
T1704 |
T1702 |
acomp |
inactive,are |
R801 |
T1705 |
T1673 |
punct |
.,expresses |
R802 |
T1707 |
T1708 |
mark |
While,is |
R803 |
T1708 |
T1714 |
advcl |
is,proposed |
R804 |
T1709 |
T1710 |
det |
the,mechanism |
R805 |
T1710 |
T1708 |
nsubj |
mechanism,is |
R806 |
T1711 |
T1710 |
acl |
ensuring,mechanism |
R807 |
T1712 |
T1713 |
amod |
singular,expression |
R808 |
T1713 |
T1711 |
dobj |
expression,ensuring |
R809 |
T1715 |
T1708 |
acomp |
unknown,is |
R810 |
T1716 |
T1714 |
punct |
", ",proposed |
R811 |
T1717 |
T1718 |
amod |
many,hypotheses |
R812 |
T1718 |
T1714 |
nsubjpass |
hypotheses,proposed |
R813 |
T1719 |
T1714 |
aux |
have,proposed |
R814 |
T1720 |
T1714 |
auxpass |
been,proposed |
R815 |
T1721 |
T1722 |
punct |
[,19 |
R816 |
T1722 |
T1714 |
parataxis |
19,proposed |
R817 |
T1723 |
T1722 |
nummod |
14,19 |
R818 |
T1724 |
T1722 |
punct |
",",19 |
R819 |
T1725 |
T1722 |
nummod |
16,19 |
R820 |
T1726 |
T1722 |
punct |
",",19 |
R821 |
T1727 |
T1722 |
punct |
],19 |
R822 |
T1728 |
T1714 |
punct |
.,proposed |
R823 |
T1730 |
T1731 |
prep |
In,bring |
R824 |
T1732 |
T1733 |
nummod |
one,model |
R825 |
T1733 |
T1730 |
pobj |
model,In |
R826 |
T1734 |
T1731 |
punct |
", ",bring |
R827 |
T1735 |
T1736 |
amod |
somatic,recombination |
R828 |
T1736 |
T1731 |
nsubj |
recombination,bring |
R829 |
T1737 |
T1736 |
compound |
DNA,recombination |
R830 |
T1738 |
T1731 |
aux |
would,bring |
R831 |
T1739 |
T1740 |
nummod |
one,gene |
R832 |
T1740 |
T1731 |
dobj |
gene,bring |
R833 |
T1741 |
T1742 |
amod |
olfactory,receptor |
R834 |
T1742 |
T1740 |
compound |
receptor,gene |
R835 |
T1743 |
T1731 |
prep |
into,bring |
R836 |
T1744 |
T1745 |
det |
a,configuration |
R837 |
T1745 |
T1743 |
pobj |
configuration,into |
R838 |
T1797 |
T1798 |
mark |
as,expressed |
R839 |
T1746 |
T1747 |
advmod |
transcriptionally,active |
R840 |
T1798 |
T1792 |
advcl |
expressed,is |
R841 |
T1747 |
T1745 |
amod |
active,configuration |
R842 |
T1748 |
T1745 |
amod |
genomic,configuration |
R843 |
T1799 |
T1800 |
advmod |
even,transgenes |
R844 |
T1800 |
T1798 |
nsubjpass |
transgenes,expressed |
R845 |
T1801 |
T1802 |
amod |
olfactory,receptor |
R846 |
T1749 |
T1731 |
punct |
", ",bring |
R847 |
T1802 |
T1800 |
compound |
receptor,transgenes |
R848 |
T1803 |
T1800 |
prep |
with,transgenes |
R849 |
T1804 |
T1805 |
amod |
identical,regions |
R850 |
T1750 |
T1751 |
mark |
as,observed |
R851 |
T1805 |
T1803 |
pobj |
regions,with |
R852 |
T1806 |
T1805 |
amod |
upstream,regions |
R853 |
T1807 |
T1798 |
auxpass |
are,expressed |
R854 |
T1751 |
T1731 |
advcl |
observed,bring |
R855 |
T1808 |
T1798 |
prep |
in,expressed |
R856 |
T1809 |
T1810 |
amod |
different,neurons |
R857 |
T1810 |
T1808 |
pobj |
neurons,in |
R858 |
T1752 |
T1751 |
prep |
for,observed |
R859 |
T1811 |
T1812 |
punct |
[,18 |
R860 |
T1812 |
T1798 |
parataxis |
18,expressed |
R861 |
T1813 |
T1812 |
punct |
],18 |
R862 |
T1753 |
T1754 |
det |
the,locus |
R863 |
T1814 |
T1792 |
punct |
.,is |
R864 |
T1754 |
T1752 |
pobj |
locus,for |
R865 |
T1816 |
T1817 |
prep |
In,contain |
R866 |
T1818 |
T1819 |
det |
a,model |
R867 |
T1755 |
T1756 |
compound |
yeast,mating |
R868 |
T1819 |
T1816 |
pobj |
model,In |
R869 |
T1820 |
T1819 |
amod |
third,model |
R870 |
T1756 |
T1757 |
compound |
mating,type |
R871 |
T1821 |
T1817 |
punct |
", ",contain |
R872 |
T1822 |
T1823 |
expl |
there,be |
R873 |
T1823 |
T1817 |
ccomp |
be,contain |
R874 |
T1757 |
T1754 |
compound |
type,locus |
R875 |
T1824 |
T1823 |
aux |
would,be |
R876 |
T1825 |
T1826 |
det |
a,quantity |
R877 |
T1826 |
T1823 |
attr |
quantity,be |
R878 |
T1758 |
T1759 |
punct |
[,20 |
R879 |
T1827 |
T1826 |
amod |
limiting,quantity |
R880 |
T1828 |
T1826 |
prep |
of,quantity |
R881 |
T1759 |
T1754 |
parataxis |
20,locus |
R882 |
T1829 |
T1830 |
compound |
transcription,factors |
R883 |
T1830 |
T1828 |
pobj |
factors,of |
R884 |
T1831 |
T1817 |
punct |
-,contain |
R885 |
T1760 |
T1759 |
punct |
],20 |
R886 |
T1832 |
T1833 |
det |
the,cell |
R887 |
T1833 |
T1817 |
nsubj |
cell,contain |
R888 |
T1834 |
T1817 |
aux |
might,contain |
R889 |
T1761 |
T1754 |
cc |
and,locus |
R890 |
T1835 |
T1836 |
det |
a,machine |
R891 |
T1836 |
T1817 |
dobj |
machine,contain |
R892 |
T1837 |
T1836 |
amod |
single,machine |
R893 |
T1762 |
T1763 |
det |
the,genes |
R894 |
T1838 |
T1836 |
amod |
transcriptional,machine |
R895 |
T1839 |
T1836 |
punct |
',machine |
R896 |
T1840 |
T1836 |
punct |
',machine |
R897 |
T1841 |
T1842 |
dep |
that,is |
R898 |
T1842 |
T1836 |
relcl |
is,machine |
R899 |
T1843 |
T1842 |
acomp |
capable,is |
R900 |
T1763 |
T1754 |
conj |
genes,locus |
R901 |
T1764 |
T1763 |
amod |
mammalian,genes |
R902 |
T1844 |
T1843 |
prep |
of,capable |
R903 |
T1765 |
T1763 |
compound |
immunoglobulin,genes |
R904 |
T1845 |
T1844 |
pcomp |
accommodating,of |
R905 |
T1846 |
T1847 |
det |
the,promoter |
R906 |
T1847 |
T1845 |
dobj |
promoter,accommodating |
R907 |
T1766 |
T1767 |
punct |
[,21 |
R908 |
T1848 |
T1847 |
prep |
of,promoter |
R909 |
T1849 |
T1850 |
advmod |
only,gene |
R910 |
T1767 |
T1763 |
parataxis |
21,genes |
R911 |
T1850 |
T1848 |
pobj |
gene,of |
R912 |
T1851 |
T1850 |
nummod |
one,gene |
R913 |
T1852 |
T1853 |
amod |
olfactory,receptor |
R914 |
T1768 |
T1767 |
punct |
],21 |
R915 |
T1853 |
T1850 |
compound |
receptor,gene |
R916 |
T1854 |
T1836 |
punct |
", ",machine |
R917 |
T1769 |
T1731 |
punct |
.,bring |
R918 |
T1855 |
T1836 |
amod |
similar,machine |
R919 |
T1856 |
T1855 |
prep |
to,similar |
R920 |
T1857 |
T1858 |
det |
the,body |
R921 |
T1771 |
T1772 |
advmod |
Alternatively,invokes |
R922 |
T1858 |
T1856 |
pobj |
body,to |
R923 |
T1859 |
T1860 |
compound |
expression,site |
R924 |
T1860 |
T1858 |
compound |
site,body |
R925 |
T1861 |
T1858 |
acl |
used,body |
R926 |
T1773 |
T1772 |
punct |
", ",invokes |
R927 |
T1862 |
T1861 |
agent |
by,used |
R928 |
T1863 |
T1864 |
amod |
African,trypanosomes |
R929 |
T1864 |
T1862 |
pobj |
trypanosomes,by |
R930 |
T1865 |
T1866 |
aux |
to,ensure |
R931 |
T1774 |
T1775 |
det |
a,model |
R932 |
T1866 |
T1861 |
advcl |
ensure,used |
R933 |
T1867 |
T1868 |
amod |
singular,expression |
R934 |
T1775 |
T1772 |
nsubj |
model,invokes |
R935 |
T1868 |
T1866 |
dobj |
expression,ensure |
R936 |
T1869 |
T1868 |
prep |
of,expression |
R937 |
T1776 |
T1775 |
amod |
second,model |
R938 |
T1870 |
T1871 |
advmod |
only,set |
R939 |
T1871 |
T1869 |
pobj |
set,of |
R940 |
T1872 |
T1871 |
nummod |
one,set |
R941 |
T1777 |
T1778 |
det |
a,code |
R942 |
T1873 |
T1871 |
prep |
of,set |
R943 |
T1874 |
T1875 |
amod |
variant,glycoprotein |
R944 |
T1875 |
T1877 |
compound |
glycoprotein,genes |
R945 |
T1778 |
T1772 |
dobj |
code,invokes |
R946 |
T1876 |
T1875 |
compound |
surface,glycoprotein |
R947 |
T1877 |
T1873 |
pobj |
genes,of |
R948 |
T1878 |
T1879 |
punct |
[,22 |
R949 |
T1879 |
T1817 |
parataxis |
22,contain |
R950 |
T1880 |
T1879 |
punct |
],22 |
R951 |
T1779 |
T1778 |
amod |
combinatorial,code |
R952 |
T1881 |
T1817 |
punct |
.,contain |
R953 |
T1883 |
T1884 |
advmod |
Finally,send |
R954 |
T1780 |
T1778 |
prep |
of,code |
R955 |
T1885 |
T1884 |
punct |
", ",send |
R956 |
T1886 |
T1884 |
prep |
in,send |
R957 |
T1781 |
T1782 |
compound |
transcription,factor |
R958 |
T1887 |
T1888 |
det |
a,model |
R959 |
T1888 |
T1886 |
pobj |
model,in |
R960 |
T1782 |
T1783 |
compound |
factor,sites |
R961 |
T1889 |
T1888 |
amod |
fourth,model |
R962 |
T1890 |
T1884 |
punct |
", ",send |
R963 |
T1891 |
T1892 |
amod |
transcriptional,activity |
R964 |
T1783 |
T1780 |
pobj |
sites,of |
R965 |
T1892 |
T1884 |
nsubj |
activity,send |
R966 |
T1893 |
T1892 |
prep |
at,activity |
R967 |
T1894 |
T1895 |
nummod |
one,allele |
R968 |
T1784 |
T1783 |
compound |
binding,sites |
R969 |
T1895 |
T1893 |
pobj |
allele,at |
R970 |
T1896 |
T1897 |
advmod |
stochastically,chosen |
R971 |
T1785 |
T1778 |
amod |
unique,code |
R972 |
T1897 |
T1895 |
amod |
chosen,allele |
R973 |
T1898 |
T1899 |
amod |
olfactory,receptor |
R974 |
T1899 |
T1895 |
compound |
receptor,allele |
R975 |
T1786 |
T1785 |
prep |
to,unique |
R976 |
T1900 |
T1884 |
aux |
might,send |
R977 |
T1901 |
T1902 |
amod |
negative,feedback |
R978 |
T1902 |
T1884 |
dobj |
feedback,send |
R979 |
T1787 |
T1788 |
det |
each,gene |
R980 |
T1788 |
T1786 |
pobj |
gene,to |
R981 |
T1789 |
T1772 |
punct |
.,invokes |
R982 |
T1791 |
T1792 |
nsubj |
This,is |
R983 |
T1903 |
T1904 |
aux |
to,repress |
R984 |
T1904 |
T1884 |
advcl |
repress,send |
R985 |
T1793 |
T1792 |
acomp |
unlikely,is |
R986 |
T1905 |
T1904 |
dobj |
activity,repress |
R987 |
T1906 |
T1905 |
prep |
of,activity |
R988 |
T1907 |
T1908 |
det |
all,receptors |
R989 |
T1794 |
T1792 |
punct |
", ",is |
R990 |
T1908 |
T1906 |
pobj |
receptors,of |
R991 |
T1909 |
T1908 |
amod |
other,receptors |
R992 |
T1795 |
T1792 |
advmod |
however,is |
R993 |
T1910 |
T1908 |
amod |
olfactory,receptors |
R994 |
T1911 |
T1884 |
cc |
and,send |
R995 |
T1912 |
T1911 |
punct |
/,and |
R996 |
T1796 |
T1792 |
punct |
", ",is |
R997 |
T1913 |
T1911 |
cc |
or,and |
R998 |
T1914 |
T1915 |
amod |
positive,feedback |
R999 |
T2009 |
T2010 |
amod |
many,genes |
R1000 |
T1915 |
T1884 |
conj |
feedback,send |
R1001 |
T1916 |
T1917 |
aux |
to,enhance |
R1002 |
T1917 |
T1915 |
advcl |
enhance,feedback |
R1003 |
T1918 |
T1919 |
poss |
its,expression |
R1004 |
T1919 |
T1917 |
dobj |
expression,enhance |
R1005 |
T1920 |
T1919 |
amod |
own,expression |
R1006 |
T1921 |
T1884 |
punct |
.,send |
R1007 |
T2010 |
T2008 |
pobj |
genes,for |
R1008 |
T1923 |
T1924 |
prep |
In,share |
R1009 |
T2011 |
T2001 |
cc |
and,sequences |
R1010 |
T1925 |
T1926 |
det |
the,models |
R1011 |
T1926 |
T1923 |
pobj |
models,In |
R1012 |
T1927 |
T1926 |
amod |
latter,models |
R1013 |
T2012 |
T2001 |
punct |
", ",sequences |
R1014 |
T1928 |
T1926 |
nummod |
three,models |
R1015 |
T2013 |
T2014 |
advmod |
therefore,dataset |
R1016 |
T1929 |
T1924 |
punct |
", ",share |
R1017 |
T2014 |
T2001 |
conj |
dataset,sequences |
R1018 |
T1930 |
T1924 |
nsubj |
some,share |
R1019 |
T1931 |
T1930 |
cc |
or,some |
R1020 |
T1932 |
T1933 |
nmod |
all,genes |
R1021 |
T2015 |
T2014 |
punct |
", ",dataset |
R1022 |
T1933 |
T1930 |
conj |
genes,some |
R1023 |
T1934 |
T1935 |
amod |
olfactory,receptor |
R1024 |
T1935 |
T1933 |
compound |
receptor,genes |
R1025 |
T2016 |
T2014 |
det |
a,dataset |
R1026 |
T1936 |
T1924 |
aux |
might,share |
R1027 |
T1937 |
T1938 |
compound |
transcription,factor |
R1028 |
T1938 |
T1939 |
compound |
factor,binding |
R1029 |
T2017 |
T2014 |
amod |
large,dataset |
R1030 |
T1939 |
T1940 |
compound |
binding,motifs |
R1031 |
T1940 |
T1924 |
dobj |
motifs,share |
R1032 |
T2018 |
T2014 |
prep |
of,dataset |
R1033 |
T1941 |
T1924 |
punct |
", ",share |
R1034 |
T1942 |
T1924 |
cc |
and,share |
R1035 |
T1943 |
T1944 |
prep |
in,share |
R1036 |
T2019 |
T2020 |
compound |
candidate,promoter |
R1037 |
T1944 |
T1924 |
conj |
share,share |
R1038 |
T1945 |
T1946 |
det |
the,model |
R1039 |
T2020 |
T2021 |
compound |
promoter,regions |
R1040 |
T1946 |
T1943 |
pobj |
model,in |
R1041 |
T1947 |
T1946 |
amod |
first,model |
R1042 |
T2021 |
T2018 |
pobj |
regions,of |
R1043 |
T1948 |
T1944 |
punct |
", ",share |
R1044 |
T1949 |
T1950 |
amod |
olfactory,receptor |
R1045 |
T2022 |
T1999 |
punct |
.,provides |
R1046 |
T1950 |
T1951 |
compound |
receptor,genes |
R1047 |
T1951 |
T1944 |
nsubj |
genes,share |
R1048 |
T2024 |
T2025 |
amod |
Olfactory,receptor |
R1049 |
T1952 |
T1944 |
aux |
might,share |
R1050 |
T1953 |
T1954 |
det |
a,signal |
R1051 |
T1954 |
T1944 |
dobj |
signal,share |
R1052 |
T1955 |
T1954 |
amod |
common,signal |
R1053 |
T1956 |
T1954 |
compound |
recombination,signal |
R1054 |
T1957 |
T1944 |
punct |
.,share |
R1055 |
T2025 |
T2026 |
compound |
receptor,genes |
R1056 |
T1959 |
T1960 |
prep |
In,is |
R1057 |
T1961 |
T1959 |
pobj |
order,In |
R1058 |
T2026 |
T2027 |
nsubj |
genes,have |
R1059 |
T1962 |
T1963 |
aux |
to,perform |
R1060 |
T1963 |
T1961 |
acl |
perform,order |
R1061 |
T1964 |
T1965 |
amod |
computational,searches |
R1062 |
T2028 |
T2029 |
det |
an,region |
R1063 |
T1965 |
T1963 |
dobj |
searches,perform |
R1064 |
T1966 |
T1964 |
cc |
and,computational |
R1065 |
T1967 |
T1964 |
conj |
experimental,computational |
R1066 |
T1968 |
T1965 |
prep |
for,searches |
R1067 |
T2029 |
T2027 |
dobj |
region,have |
R1068 |
T1969 |
T1970 |
amod |
such,signals |
R1069 |
T1970 |
T1968 |
pobj |
signals,for |
R1070 |
T1971 |
T1960 |
punct |
", ",is |
R1071 |
T2030 |
T2029 |
amod |
intronless,region |
R1072 |
T1972 |
T1960 |
nsubj |
it,is |
R1073 |
T1973 |
T1960 |
acomp |
important,is |
R1074 |
T2031 |
T2029 |
amod |
coding,region |
R1075 |
T1974 |
T1975 |
aux |
to,have |
R1076 |
T1975 |
T1960 |
xcomp |
have,is |
R1077 |
T1976 |
T1977 |
det |
a,idea |
R1078 |
T2032 |
T2027 |
punct |
", ",have |
R1079 |
T1977 |
T1975 |
dobj |
idea,have |
R1080 |
T1978 |
T1977 |
amod |
better,idea |
R1081 |
T1979 |
T1977 |
prep |
of,idea |
R1082 |
T1980 |
T1981 |
det |
the,site |
R1083 |
T2033 |
T2027 |
advcl |
simplifying,have |
R1084 |
T1981 |
T1979 |
pobj |
site,of |
R1085 |
T1982 |
T1981 |
amod |
transcriptional,site |
R1086 |
T2034 |
T2035 |
preconj |
both,computational |
R1087 |
T1983 |
T1981 |
compound |
start,site |
R1088 |
T1984 |
T1981 |
prep |
of,site |
R1089 |
T1985 |
T1986 |
det |
a,number |
R1090 |
T2035 |
T2036 |
amod |
computational,identification |
R1091 |
T1986 |
T1984 |
pobj |
number,of |
R1092 |
T1987 |
T1986 |
amod |
large,number |
R1093 |
T1988 |
T1986 |
prep |
of,number |
R1094 |
T2036 |
T2033 |
dobj |
identification,simplifying |
R1095 |
T1989 |
T1990 |
amod |
olfactory,receptor |
R1096 |
T1990 |
T1991 |
compound |
receptor,genes |
R1097 |
T2037 |
T2035 |
cc |
and,computational |
R1098 |
T1991 |
T1988 |
pobj |
genes,of |
R1099 |
T1992 |
T1960 |
punct |
.,is |
R1100 |
T2038 |
T2035 |
conj |
experimental,computational |
R1101 |
T1994 |
T1995 |
poss |
Our,collection |
R1102 |
T1995 |
T1999 |
nsubj |
collection,provides |
R1103 |
T1996 |
T1997 |
amod |
olfactory,receptor |
R1104 |
T1997 |
T1995 |
compound |
receptor,collection |
R1105 |
T1998 |
T1995 |
compound |
EST,collection |
R1106 |
T2039 |
T2040 |
amod |
olfactory,receptor |
R1107 |
T2000 |
T2001 |
nummod |
5,sequences |
R1108 |
T2001 |
T1999 |
dobj |
sequences,provides |
R1109 |
T2040 |
T2036 |
compound |
receptor,identification |
R1110 |
T2002 |
T2000 |
punct |
',5 |
R1111 |
T2003 |
T2004 |
amod |
untranslated,region |
R1112 |
T2004 |
T2001 |
nmod |
region,sequences |
R1113 |
T2041 |
T2027 |
punct |
.,have |
R1114 |
T2005 |
T2004 |
punct |
(,region |
R1115 |
T2006 |
T2004 |
appos |
UTR,region |
R1116 |
T2007 |
T2001 |
punct |
),sequences |
R1117 |
T2008 |
T2001 |
prep |
for,sequences |
R1118 |
T2043 |
T2044 |
prep |
For,determined |
R1119 |
T2045 |
T2046 |
det |
a,number |
R1120 |
T2046 |
T2043 |
pobj |
number,For |
R1121 |
T2115 |
T2116 |
punct |
-,27 |
R1122 |
T2047 |
T2046 |
amod |
small,number |
R1123 |
T2116 |
T2114 |
prep |
27,25 |
R1124 |
T2117 |
T2114 |
punct |
],25 |
R1125 |
T2118 |
T2094 |
punct |
.,described |
R1126 |
T2048 |
T2046 |
prep |
of,number |
R1127 |
T2120 |
T2121 |
compound |
cDNA,identification |
R1128 |
T2049 |
T2050 |
amod |
olfactory,receptors |
R1129 |
T2121 |
T2122 |
nsubjpass |
identification,used |
R1130 |
T2123 |
T2121 |
cc |
and,identification |
R1131 |
T2050 |
T2048 |
pobj |
receptors,of |
R1132 |
T2124 |
T2125 |
compound |
RACE,data |
R1133 |
T2125 |
T2121 |
conj |
data,identification |
R1134 |
T2126 |
T2122 |
aux |
have,used |
R1135 |
T2051 |
T2044 |
punct |
", ",determined |
R1136 |
T2127 |
T2122 |
auxpass |
been,used |
R1137 |
T2128 |
T2129 |
aux |
to,determine |
R1138 |
T2129 |
T2122 |
advcl |
determine,used |
R1139 |
T2052 |
T2053 |
compound |
gene,structure |
R1140 |
T2130 |
T2131 |
compound |
gene,structure |
R1141 |
T2131 |
T2129 |
dobj |
structure,determine |
R1142 |
T2132 |
T2129 |
prep |
for,determine |
R1143 |
T2053 |
T2044 |
nsubjpass |
structure,determined |
R1144 |
T2133 |
T2134 |
advmod |
about,30 |
R1145 |
T2134 |
T2135 |
nummod |
30,genes |
R1146 |
T2054 |
T2044 |
aux |
has,determined |
R1147 |
T2135 |
T2132 |
pobj |
genes,for |
R1148 |
T2136 |
T2137 |
punct |
", ",see |
R1149 |
T2137 |
T2122 |
parataxis |
see,used |
R1150 |
T2055 |
T2044 |
auxpass |
been,determined |
R1151 |
T2138 |
T2137 |
punct |
", ",see |
R1152 |
T2139 |
T2140 |
prep |
for,23 |
R1153 |
T2140 |
T2137 |
dobj |
23,see |
R1154 |
T2056 |
T2044 |
punct |
.,determined |
R1155 |
T2141 |
T2139 |
pobj |
example,for |
R1156 |
T2142 |
T2140 |
punct |
", ",23 |
R1157 |
T2143 |
T2140 |
punct |
[,23 |
R1158 |
T2144 |
T2140 |
nummod |
19,23 |
R1159 |
T2145 |
T2140 |
punct |
",",23 |
R1160 |
T2058 |
T2059 |
amod |
Additional,exons |
R1161 |
T2146 |
T2137 |
punct |
],see |
R1162 |
T2147 |
T2122 |
punct |
.,used |
R1163 |
T2149 |
T2150 |
advmod |
However,been |
R1164 |
T2059 |
T2063 |
nsubj |
exons,lie |
R1165 |
T2151 |
T2150 |
punct |
", ",been |
R1166 |
T2152 |
T2153 |
amod |
computational,prediction |
R1167 |
T2153 |
T2150 |
nsubj |
prediction,been |
R1168 |
T2060 |
T2059 |
nummod |
5,exons |
R1169 |
T2154 |
T2153 |
prep |
of,prediction |
R1170 |
T2155 |
T2156 |
det |
the,location |
R1171 |
T2156 |
T2154 |
pobj |
location,of |
R1172 |
T2061 |
T2060 |
punct |
',5 |
R1173 |
T2157 |
T2156 |
prep |
of,location |
R1174 |
T2158 |
T2159 |
nummod |
5,exons |
R1175 |
T2159 |
T2157 |
pobj |
exons,of |
R1176 |
T2062 |
T2059 |
amod |
untranslated,exons |
R1177 |
T2160 |
T2158 |
punct |
',5 |
R1178 |
T2161 |
T2159 |
amod |
upstream,exons |
R1179 |
T2162 |
T2153 |
cc |
and,prediction |
R1180 |
T2064 |
T2063 |
advmod |
upstream,lie |
R1181 |
T2163 |
T2164 |
det |
the,extent |
R1182 |
T2164 |
T2153 |
conj |
extent,prediction |
R1183 |
T2165 |
T2164 |
prep |
of,extent |
R1184 |
T2166 |
T2167 |
det |
the,UTR |
R1185 |
T2065 |
T2064 |
prep |
of,upstream |
R1186 |
T2167 |
T2165 |
pobj |
UTR,of |
R1187 |
T2168 |
T2167 |
nummod |
3,UTR |
R1188 |
T2066 |
T2067 |
det |
the,region |
R1189 |
T2169 |
T2168 |
punct |
',3 |
R1190 |
T2170 |
T2153 |
prep |
from,prediction |
R1191 |
T2171 |
T2172 |
amod |
genomic,sequence |
R1193 |
T2172 |
T2170 |
pobj |
sequence,from |
R1194 |
T2173 |
T2150 |
aux |
has,been |
R1195 |
T2174 |
T2175 |
advmod |
extremely,difficult |
R1196 |
T2068 |
T2067 |
amod |
coding,region |
R1197 |
T2175 |
T2150 |
acomp |
difficult,been |
R1198 |
T2176 |
T2150 |
punct |
.,been |
R1199 |
T2069 |
T2063 |
cc |
and,lie |
R1200 |
T2178 |
T2179 |
det |
A,combination |
R1201 |
T2179 |
T2180 |
nsubj |
combination,allowed |
R1202 |
T2070 |
T2071 |
aux |
can,spliced |
R1203 |
T2181 |
T2179 |
prep |
of,combination |
R1204 |
T2182 |
T2183 |
compound |
splice,site |
R1205 |
T2071 |
T2063 |
conj |
spliced,lie |
R1206 |
T2183 |
T2184 |
compound |
site,predictions |
R1207 |
T2184 |
T2181 |
pobj |
predictions,of |
R1208 |
T2185 |
T2184 |
cc |
and,predictions |
R1209 |
T2186 |
T2184 |
conj |
similarity,predictions |
R1210 |
T2187 |
T2186 |
prep |
to,similarity |
R1211 |
T2188 |
T2189 |
amod |
other,receptors |
R1212 |
T2072 |
T2071 |
auxpass |
be,spliced |
R1213 |
T2189 |
T2187 |
pobj |
receptors,to |
R1214 |
T2190 |
T2189 |
amod |
olfactory,receptors |
R1215 |
T2073 |
T2071 |
advmod |
alternatively,spliced |
R1216 |
T2074 |
T2075 |
punct |
[,23 |
R1217 |
T2191 |
T2180 |
aux |
has,allowed |
R1218 |
T2075 |
T2071 |
parataxis |
23,spliced |
R1219 |
T2192 |
T2193 |
det |
some,investigators |
R1220 |
T2076 |
T2075 |
dep |
19,23 |
R1221 |
T2193 |
T2194 |
nsubj |
investigators,predict |
R1222 |
T2194 |
T2180 |
ccomp |
predict,allowed |
R1223 |
T2077 |
T2075 |
punct |
",",23 |
R1224 |
T2195 |
T2194 |
aux |
to,predict |
R1225 |
T2196 |
T2197 |
nummod |
5,exon |
R1226 |
T2197 |
T2199 |
compound |
exon,locations |
R1227 |
T2078 |
T2079 |
punct |
-,26 |
R1228 |
T2198 |
T2196 |
punct |
',5 |
R1229 |
T2199 |
T2194 |
dobj |
locations,predict |
R1230 |
T2200 |
T2194 |
prep |
for,predict |
R1231 |
T2079 |
T2075 |
prep |
26,23 |
R1232 |
T2201 |
T2202 |
advmod |
around,15 |
R1233 |
T2202 |
T2203 |
nummod |
15,genes |
R1234 |
T2080 |
T2075 |
punct |
],23 |
R1235 |
T2203 |
T2200 |
pobj |
genes,for |
R1236 |
T2204 |
T2205 |
punct |
[,28 |
R1237 |
T2205 |
T2180 |
parataxis |
28,allowed |
R1238 |
T2206 |
T2205 |
nummod |
25,28 |
R1239 |
T2081 |
T2063 |
punct |
.,lie |
R1240 |
T2207 |
T2205 |
punct |
",",28 |
R1241 |
T2208 |
T2205 |
punct |
],28 |
R1242 |
T2209 |
T2180 |
punct |
.,allowed |
R1243 |
T2083 |
T2084 |
det |
The,region |
R1244 |
T2211 |
T2212 |
amod |
Experimental,validation |
R1245 |
T2212 |
T2213 |
nsubj |
validation,shows |
R1246 |
T2084 |
T2088 |
nsubj |
region,is |
R1247 |
T2214 |
T2215 |
mark |
that,are |
R1248 |
T2215 |
T2213 |
ccomp |
are,shows |
R1249 |
T2085 |
T2084 |
nummod |
3,region |
R1250 |
T2216 |
T2215 |
nsubj |
some,are |
R1251 |
T2217 |
T2216 |
punct |
", ",some |
R1252 |
T2218 |
T2216 |
cc |
but,some |
R1253 |
T2086 |
T2085 |
punct |
',3 |
R1254 |
T2219 |
T2218 |
neg |
not,but |
R1255 |
T2220 |
T2216 |
conj |
all,some |
R1256 |
T2087 |
T2084 |
amod |
untranslated,region |
R1257 |
T2089 |
T2088 |
advmod |
typically,is |
R1258 |
T2090 |
T2088 |
acomp |
intronless,is |
R1259 |
T2221 |
T2220 |
punct |
", ",all |
R1260 |
T2222 |
T2220 |
conj |
predictions,all |
R1261 |
T2223 |
T2215 |
acomp |
accurate,are |
R1262 |
T2224 |
T2225 |
punct |
[,25 |
R1263 |
T2091 |
T2088 |
punct |
.,is |
R1264 |
T2225 |
T2213 |
parataxis |
25,shows |
R1265 |
T2226 |
T2225 |
nummod |
24,25 |
R1266 |
T2227 |
T2225 |
punct |
",",25 |
R1267 |
T2093 |
T2094 |
nsubjpass |
Exceptions,described |
R1268 |
T2228 |
T2225 |
punct |
],25 |
R1269 |
T2229 |
T2213 |
punct |
.,shows |
R1270 |
T2231 |
T2232 |
det |
The,number |
R1271 |
T2095 |
T2093 |
prep |
to,Exceptions |
R1272 |
T2232 |
T2234 |
nsubjpass |
number,increased |
R1273 |
T2233 |
T2232 |
amod |
total,number |
R1274 |
T2235 |
T2232 |
prep |
of,number |
R1275 |
T2096 |
T2097 |
det |
this,structure |
R1276 |
T2236 |
T2237 |
amod |
olfactory,receptors |
R1277 |
T2237 |
T2235 |
pobj |
receptors,of |
R1278 |
T2238 |
T2239 |
prep |
for,known |
R1279 |
T2097 |
T2095 |
pobj |
structure,to |
R1280 |
T2239 |
T2232 |
relcl |
known,number |
R1281 |
T2240 |
T2238 |
pobj |
which,for |
R1282 |
T2098 |
T2097 |
amod |
stereotyped,structure |
R1283 |
T2241 |
T2242 |
compound |
gene,structure |
R1284 |
T2242 |
T2239 |
nsubjpass |
structure,known |
R1285 |
T2243 |
T2239 |
auxpass |
is,known |
R1286 |
T2099 |
T2094 |
aux |
have,described |
R1287 |
T2244 |
T2234 |
auxpass |
is,increased |
R1288 |
T2245 |
T2234 |
advmod |
vastly,increased |
R1289 |
T2246 |
T2234 |
agent |
by,increased |
R1290 |
T2100 |
T2094 |
auxpass |
been,described |
R1291 |
T2247 |
T2248 |
poss |
our,study |
R1292 |
T2248 |
T2246 |
pobj |
study,by |
R1293 |
T2249 |
T2234 |
punct |
.,increased |
R1294 |
T2101 |
T2094 |
prep |
for,described |
R1295 |
T2251 |
T2252 |
prep |
In,describe |
R1296 |
T2102 |
T2103 |
det |
some,receptors |
R1297 |
T2253 |
T2254 |
det |
this,report |
R1298 |
T2254 |
T2251 |
pobj |
report,In |
R1299 |
T2103 |
T2101 |
pobj |
receptors,for |
R1300 |
T2255 |
T2252 |
punct |
", ",describe |
R1301 |
T2256 |
T2252 |
nsubj |
we,describe |
R1302 |
T2104 |
T2103 |
amod |
human,receptors |
R1303 |
T2257 |
T2258 |
det |
the,isolation |
R1304 |
T2258 |
T2252 |
dobj |
isolation,describe |
R1305 |
T2259 |
T2258 |
cc |
and,isolation |
R1306 |
T2105 |
T2103 |
amod |
olfactory,receptors |
R1307 |
T2260 |
T2258 |
conj |
analysis,isolation |
R1308 |
T2261 |
T2258 |
prep |
of,isolation |
R1309 |
T2262 |
T2263 |
quantmod |
over,"1,200" |
R1310 |
T2106 |
T2094 |
punct |
", ",described |
R1311 |
T2263 |
T2264 |
nummod |
"1,200",cDNAs |
R1312 |
T2264 |
T2261 |
pobj |
cDNAs,of |
R1313 |
T2265 |
T2264 |
acl |
representing,cDNAs |
R1314 |
T2266 |
T2267 |
nummod |
419,genes |
R1315 |
T2267 |
T2265 |
dobj |
genes,representing |
R1316 |
T2268 |
T2269 |
amod |
odorant,receptor |
R1317 |
T2107 |
T2094 |
cc |
but,described |
R1318 |
T2269 |
T2267 |
compound |
receptor,genes |
R1319 |
T2270 |
T2252 |
punct |
.,describe |
R1320 |
T2108 |
T2109 |
auxpass |
are,thought |
R1321 |
T2272 |
T2273 |
nsubj |
We,screened |
R1322 |
T2109 |
T2094 |
conj |
thought,described |
R1323 |
T2274 |
T2275 |
det |
a,library |
R1324 |
T2275 |
T2273 |
dobj |
library,screened |
R1325 |
T2110 |
T2111 |
aux |
to,be |
R1326 |
T2276 |
T2277 |
nmod |
mouse,epithelium |
R1327 |
T2277 |
T2275 |
compound |
epithelium,library |
R1328 |
T2278 |
T2277 |
amod |
olfactory,epithelium |
R1329 |
T2111 |
T2109 |
xcomp |
be,thought |
R1330 |
T2279 |
T2273 |
prep |
with,screened |
R1331 |
T2280 |
T2281 |
amod |
degenerate,probes |
R1332 |
T2112 |
T2111 |
acomp |
rare,be |
R1333 |
T2113 |
T2114 |
punct |
[,25 |
R1334 |
T2281 |
T2279 |
pobj |
probes,with |
R1335 |
T2114 |
T2109 |
parataxis |
25,thought |
R1336 |
T2282 |
T2283 |
amod |
olfactory,receptor |
R1337 |
T2283 |
T2281 |
compound |
receptor,probes |
R1338 |
T2284 |
T2273 |
cc |
and,screened |
R1339 |
T2327 |
T2314 |
conj |
show,demonstrate |
R1340 |
T2285 |
T2273 |
conj |
obtained,screened |
R1341 |
T2286 |
T2285 |
dobj |
5,obtained |
R1342 |
T2287 |
T2286 |
punct |
',5 |
R1343 |
T2288 |
T2289 |
compound |
end,sequences |
R1344 |
T2328 |
T2329 |
mark |
that,have |
R1345 |
T2289 |
T2286 |
appos |
sequences,5 |
R1346 |
T2290 |
T2289 |
punct |
(,sequences |
R1347 |
T2329 |
T2327 |
ccomp |
have,show |
R1348 |
T2291 |
T2289 |
appos |
ESTs,sequences |
R1349 |
T2292 |
T2285 |
punct |
),obtained |
R1350 |
T2330 |
T2331 |
amod |
most,genes |
R1351 |
T2293 |
T2285 |
prep |
from,obtained |
R1352 |
T2294 |
T2295 |
amod |
purified,cDNAs |
R1353 |
T2295 |
T2293 |
pobj |
cDNAs,from |
R1354 |
T2331 |
T2329 |
nsubj |
genes,have |
R1355 |
T2296 |
T2273 |
punct |
.,screened |
R1356 |
T2332 |
T2333 |
amod |
olfactory,receptor |
R1357 |
T2298 |
T2299 |
det |
These,clones |
R1358 |
T2299 |
T2300 |
nsubj |
clones,confirm |
R1359 |
T2333 |
T2331 |
compound |
receptor,genes |
R1360 |
T2301 |
T2302 |
amod |
olfactory,expression |
R1361 |
T2302 |
T2300 |
dobj |
expression,confirm |
R1362 |
T2334 |
T2335 |
amod |
multiple,isoforms |
R1363 |
T2303 |
T2302 |
prep |
of,expression |
R1364 |
T2304 |
T2305 |
quantmod |
over,400 |
R1365 |
T2305 |
T2306 |
nummod |
400,receptors |
R1366 |
T2306 |
T2303 |
pobj |
receptors,of |
R1367 |
T2307 |
T2306 |
amod |
olfactory,receptors |
R1368 |
T2308 |
T2300 |
punct |
", ",confirm |
R1369 |
T2309 |
T2300 |
conj |
provide,confirm |
R1370 |
T2335 |
T2329 |
dobj |
isoforms,have |
R1371 |
T2310 |
T2311 |
poss |
their,structure |
R1372 |
T2311 |
T2309 |
dobj |
structure,provide |
R1373 |
T2336 |
T2335 |
amod |
transcriptional,isoforms |
R1374 |
T2312 |
T2311 |
compound |
gene,structure |
R1375 |
T2313 |
T2309 |
punct |
", ",provide |
R1376 |
T2314 |
T2309 |
conj |
demonstrate,provide |
R1377 |
T2337 |
T2300 |
punct |
.,confirm |
R1378 |
T2315 |
T2316 |
mark |
that,expressed |
R1379 |
T2316 |
T2314 |
ccomp |
expressed,demonstrate |
R1380 |
T2317 |
T2318 |
neg |
not,receptors |
R1381 |
T2318 |
T2316 |
nsubjpass |
receptors,expressed |
R1382 |
T2319 |
T2318 |
det |
all,receptors |
R1383 |
T2320 |
T2318 |
amod |
olfactory,receptors |
R1384 |
T2321 |
T2316 |
auxpass |
are,expressed |
R1385 |
T2322 |
T2316 |
prep |
at,expressed |
R1386 |
T2323 |
T2324 |
det |
the,level |
R1387 |
T2324 |
T2322 |
pobj |
level,at |
R1388 |
T2325 |
T2324 |
amod |
same,level |
R1389 |
T2326 |
T2314 |
cc |
and,demonstrate |
R1390 |
T2624 |
T2625 |
advmod |
At,419 |
R1391 |
T2625 |
T2627 |
nummod |
419,genes |
R1392 |
T2626 |
T2625 |
advmod |
least,419 |
R1393 |
T2627 |
T2631 |
nsubjpass |
genes,expressed |
R1394 |
T2628 |
T2627 |
nmod |
mouse,genes |
R1395 |
T2629 |
T2630 |
amod |
olfactory,receptor |
R1396 |
T2630 |
T2627 |
compound |
receptor,genes |
R1397 |
T2632 |
T2631 |
auxpass |
are,expressed |
R1398 |
T2633 |
T2631 |
prep |
in,expressed |
R1399 |
T2634 |
T2635 |
det |
the,epithelium |
R1400 |
T2635 |
T2633 |
pobj |
epithelium,in |
R1401 |
T2636 |
T2635 |
amod |
olfactory,epithelium |
R1402 |
T2638 |
T2639 |
nsubj |
We,isolated |
R1403 |
T2640 |
T2639 |
aux |
have,isolated |
R1404 |
T2641 |
T2642 |
nummod |
"1,264",clones |
R1405 |
T2642 |
T2639 |
dobj |
clones,isolated |
R1406 |
T2643 |
T2644 |
amod |
olfactory,receptor |
R1407 |
T2644 |
T2645 |
compound |
receptor,cDNA |
R1408 |
T2645 |
T2642 |
compound |
cDNA,clones |
R1409 |
T2646 |
T2639 |
punct |
", ",isolated |
R1410 |
T2647 |
T2648 |
dep |
which,confirm |
R1411 |
T2648 |
T2639 |
ccomp |
confirm,isolated |
R1412 |
T2649 |
T2648 |
advmod |
together,confirm |
R1413 |
T2650 |
T2651 |
det |
the,expression |
R1414 |
T2651 |
T2648 |
dobj |
expression,confirm |
R1415 |
T2652 |
T2653 |
amod |
olfactory,epithelial |
R1416 |
T2653 |
T2651 |
amod |
epithelial,expression |
R1417 |
T2654 |
T2651 |
prep |
of,expression |
R1418 |
T2655 |
T2656 |
nummod |
419,genes |
R1419 |
T2656 |
T2654 |
pobj |
genes,of |
R1420 |
T2657 |
T2656 |
amod |
annotated,genes |
R1421 |
T2658 |
T2659 |
amod |
olfactory,receptor |
R1422 |
T2659 |
T2656 |
compound |
receptor,genes |
R1423 |
T2660 |
T2639 |
punct |
.,isolated |
R1424 |
T2662 |
T2663 |
nsubj |
We,used |
R1425 |
T2664 |
T2665 |
amod |
low,stringency |
R1426 |
T2665 |
T2667 |
compound |
stringency,hybridization |
R1427 |
T2666 |
T2665 |
punct |
-,stringency |
R1428 |
T2667 |
T2663 |
dobj |
hybridization,used |
R1429 |
T2668 |
T2667 |
prep |
with,hybridization |
R1430 |
T2669 |
T2670 |
amod |
degenerate,probes |
R1431 |
T2670 |
T2668 |
pobj |
probes,with |
R1432 |
T2671 |
T2672 |
amod |
olfactory,receptor |
R1433 |
T2672 |
T2670 |
compound |
receptor,probes |
R1434 |
T2673 |
T2670 |
compound |
DNA,probes |
R1435 |
T2674 |
T2675 |
aux |
to,screen |
R1436 |
T2675 |
T2663 |
advcl |
screen,used |
R1437 |
T2676 |
T2677 |
advmod |
around,"4,100,000" |
R1438 |
T2677 |
T2678 |
nummod |
"4,100,000",units |
R1439 |
T2678 |
T2675 |
dobj |
units,screen |
R1440 |
T2679 |
T2680 |
npadvmod |
plaque,forming |
R1441 |
T2680 |
T2678 |
amod |
forming,units |
R1442 |
T2681 |
T2680 |
punct |
-,forming |
R1443 |
T2682 |
T2678 |
punct |
(,units |
R1444 |
T2683 |
T2678 |
appos |
pfu,units |
R1445 |
T2684 |
T2678 |
punct |
),units |
R1446 |
T2685 |
T2678 |
prep |
of,units |
R1447 |
T2686 |
T2687 |
det |
an,library |
R1448 |
T2687 |
T2685 |
pobj |
library,of |
R1449 |
T2688 |
T2689 |
amod |
adult,mouse |
R1450 |
T2689 |
T2690 |
nmod |
mouse,cDNA |
R1451 |
T2690 |
T2687 |
compound |
cDNA,library |
R1452 |
T2691 |
T2692 |
amod |
olfactory,epithelium |
R1453 |
T2692 |
T2690 |
compound |
epithelium,cDNA |
R1454 |
T2693 |
T2678 |
cc |
and,units |
R1455 |
T2694 |
T2695 |
advmod |
around,"640,000" |
R1456 |
T2695 |
T2696 |
nummod |
"640,000",pfu |
R1457 |
T2696 |
T2678 |
conj |
pfu,units |
R1458 |
T2697 |
T2696 |
prep |
of,pfu |
R1459 |
T2698 |
T2699 |
det |
an,library |
R1460 |
T2699 |
T2697 |
pobj |
library,of |
R1461 |
T2700 |
T2701 |
amod |
embryonic,epithelium |
R1462 |
T2701 |
T2699 |
compound |
epithelium,library |
R1463 |
T2702 |
T2701 |
amod |
olfactory,epithelium |
R1464 |
T2703 |
T2663 |
punct |
.,used |
R1465 |
T2705 |
T2706 |
nsubj |
We,obtained |
R1466 |
T2707 |
T2706 |
dobj |
sequences,obtained |
R1467 |
T2708 |
T2706 |
prep |
from,obtained |
R1468 |
T2709 |
T2710 |
nummod |
"1,715",cDNAs |
R1469 |
T2710 |
T2708 |
pobj |
cDNAs,from |
R1470 |
T2711 |
T2712 |
npadvmod |
hybridization,positive |
R1471 |
T2712 |
T2710 |
amod |
positive,cDNAs |
R1472 |
T2713 |
T2712 |
punct |
-,positive |
R1473 |
T2714 |
T2706 |
prep |
following,obtained |
R1474 |
T2715 |
T2716 |
amod |
secondary,screens |
R1475 |
T2716 |
T2714 |
pobj |
screens,following |
R1476 |
T2717 |
T2718 |
aux |
to,isolate |
R1477 |
T2718 |
T2716 |
advcl |
isolate,screens |
R1478 |
T2719 |
T2720 |
amod |
single,clones |
R1479 |
T2720 |
T2718 |
dobj |
clones,isolate |
R1480 |
T2721 |
T2706 |
punct |
.,obtained |
R1481 |
T2723 |
T2724 |
prep |
Of,yielded |
R1482 |
T2725 |
T2726 |
det |
these,clones |
R1483 |
T2726 |
T2723 |
pobj |
clones,Of |
R1484 |
T2727 |
T2724 |
punct |
", ",yielded |
R1485 |
T2728 |
T2724 |
nsubj |
"1,264",yielded |
R1486 |
T2729 |
T2730 |
amod |
olfactory,receptor |
R1487 |
T2730 |
T2731 |
npadvmod |
receptor,containing |
R1488 |
T2731 |
T2733 |
amod |
containing,sequences |
R1489 |
T2732 |
T2731 |
punct |
-,containing |
R1490 |
T2733 |
T2724 |
dobj |
sequences,yielded |
R1491 |
T2734 |
T2724 |
punct |
.,yielded |
R1492 |
T2736 |
T2737 |
det |
The,rate |
R1493 |
T2737 |
T2743 |
nsubj |
rate,is |
R1494 |
T2738 |
T2739 |
nummod |
26,% |
R1495 |
T2739 |
T2737 |
nmod |
%,rate |
R1496 |
T2740 |
T2741 |
amod |
false,positive |
R1497 |
T2741 |
T2737 |
amod |
positive,rate |
R1498 |
T2742 |
T2741 |
punct |
-,positive |
R1499 |
T2744 |
T2745 |
det |
a,consequence |
R1500 |
T2745 |
T2743 |
attr |
consequence,is |
R1501 |
T2746 |
T2745 |
prep |
of,consequence |
R1502 |
T2747 |
T2746 |
pcomp |
using,of |
R1503 |
T2748 |
T2749 |
amod |
low,stringency |
R1504 |
T2749 |
T2751 |
compound |
stringency,hybridization |
R1505 |
T2750 |
T2749 |
punct |
-,stringency |
R1506 |
T2751 |
T2747 |
dobj |
hybridization,using |
R1507 |
T2752 |
T2753 |
aux |
to,obtain |
R1508 |
T2753 |
T2747 |
advcl |
obtain,using |
R1509 |
T2754 |
T2755 |
amod |
maximal,sensitivity |
R1510 |
T2755 |
T2753 |
dobj |
sensitivity,obtain |
R1511 |
T2756 |
T2743 |
punct |
.,is |
R1512 |
T2758 |
T2759 |
csubj |
Continuing,resulted |
R1513 |
T2759 |
T2764 |
ccomp |
resulted,represented |
R1514 |
T2760 |
T2761 |
det |
the,screen |
R1515 |
T2761 |
T2758 |
dobj |
screen,Continuing |
R1516 |
T2762 |
T2759 |
aux |
would,resulted |
R1517 |
T2763 |
T2759 |
aux |
have,resulted |
R1518 |
T2765 |
T2759 |
prep |
in,resulted |
R1519 |
T2766 |
T2765 |
pobj |
cDNAs,in |
R1520 |
T2767 |
T2766 |
prep |
from,cDNAs |
R1521 |
T2768 |
T2769 |
amod |
additional,receptors |
R1522 |
T2769 |
T2767 |
pobj |
receptors,from |
R1523 |
T2770 |
T2769 |
amod |
olfactory,receptors |
R1524 |
T2771 |
T2759 |
punct |
", ",resulted |
R1525 |
T2772 |
T2759 |
cc |
but,resulted |
R1526 |
T2773 |
T2774 |
nsubj |
we,reached |
R1527 |
T2774 |
T2759 |
conj |
reached,resulted |
R1528 |
T2775 |
T2776 |
det |
a,point |
R1529 |
T2776 |
T2774 |
dobj |
point,reached |
R1530 |
T2777 |
T2776 |
prep |
of,point |
R1531 |
T2778 |
T2779 |
amod |
limiting,returns |
R1532 |
T2779 |
T2777 |
pobj |
returns,of |
R1533 |
T2780 |
T2764 |
punct |
: ,represented |
R1534 |
T2781 |
T2782 |
poss |
our,batch |
R1535 |
T2782 |
T2764 |
nsubj |
batch,represented |
R1536 |
T2783 |
T2782 |
amod |
final,batch |
R1537 |
T2784 |
T2782 |
prep |
of,batch |
R1538 |
T2785 |
T2786 |
nummod |
45,sequences |
R1539 |
T2786 |
T2784 |
pobj |
sequences,of |
R1540 |
T2787 |
T2788 |
amod |
olfactory,receptor |
R1541 |
T2788 |
T2789 |
npadvmod |
receptor,positive |
R1542 |
T2789 |
T2786 |
amod |
positive,sequences |
R1543 |
T2790 |
T2789 |
punct |
-,positive |
R1544 |
T2791 |
T2792 |
nummod |
33,receptors |
R1545 |
T2792 |
T2764 |
dobj |
receptors,represented |
R1546 |
T2793 |
T2792 |
amod |
different,receptors |
R1547 |
T2794 |
T2792 |
amod |
olfactory,receptors |
R1548 |
T2795 |
T2792 |
punct |
", ",receptors |
R1549 |
T2796 |
T2797 |
prep |
of,encountered |
R1550 |
T2797 |
T2792 |
relcl |
encountered,receptors |
R1551 |
T2798 |
T2796 |
pobj |
which,of |
R1552 |
T2799 |
T2800 |
advmod |
only,four |
R1553 |
T2800 |
T2797 |
nsubjpass |
four,encountered |
R1554 |
T2801 |
T2797 |
aux |
had,encountered |
R1555 |
T2802 |
T2797 |
neg |
not,encountered |
R1556 |
T2803 |
T2797 |
auxpass |
been,encountered |
R1557 |
T2804 |
T2797 |
advmod |
previously,encountered |
R1558 |
T2805 |
T2797 |
prep |
in,encountered |
R1559 |
T2806 |
T2807 |
poss |
our,screen |
R1560 |
T2807 |
T2805 |
pobj |
screen,in |
R1561 |
T2808 |
T2764 |
punct |
.,represented |
R1562 |
T2810 |
T2811 |
compound |
Sequence,analysis |
R1563 |
T2811 |
T2812 |
nsubj |
analysis,shows |
R1564 |
T2813 |
T2814 |
mark |
that,are |
R1565 |
T2814 |
T2812 |
ccomp |
are,shows |
R1566 |
T2815 |
T2816 |
det |
the,libraries |
R1567 |
T2816 |
T2814 |
nsubj |
libraries,are |
R1568 |
T2817 |
T2814 |
prep |
of,are |
R1569 |
T2818 |
T2819 |
amod |
high,quality |
R1570 |
T2819 |
T2817 |
pobj |
quality,of |
R1571 |
T2820 |
T2812 |
punct |
.,shows |
R1572 |
T2822 |
T2823 |
advmod |
Firstly,matched |
R1573 |
T2824 |
T2823 |
punct |
", ",matched |
R1574 |
T2825 |
T2826 |
amod |
directional,cloning |
R1575 |
T2826 |
T2827 |
nsubj |
cloning,was |
R1576 |
T2827 |
T2823 |
ccomp |
was,matched |
R1577 |
T2828 |
T2827 |
acomp |
successful,was |
R1578 |
T2829 |
T2823 |
punct |
: ,matched |
R1579 |
T2830 |
T2831 |
advmod |
only,"1,430" |
R1580 |
T2831 |
T2835 |
nummod |
"1,430",sequences |
R1581 |
T2832 |
T2831 |
quantmod |
eight,"1,430" |
R1582 |
T2833 |
T2831 |
quantmod |
out,"1,430" |
R1583 |
T2834 |
T2831 |
quantmod |
of,"1,430" |
R1584 |
T2835 |
T2823 |
nsubj |
sequences,matched |
R1585 |
T2836 |
T2835 |
compound |
cDNA,sequences |
R1586 |
T2837 |
T2835 |
prep |
with,sequences |
R1587 |
T2838 |
T2839 |
det |
any,homology |
R1588 |
T2839 |
T2837 |
pobj |
homology,with |
R1589 |
T2840 |
T2839 |
compound |
protein,homology |
R1590 |
T2841 |
T2842 |
det |
that,protein |
R1591 |
T2842 |
T2823 |
dobj |
protein,matched |
R1592 |
T2843 |
T2823 |
prep |
on,matched |
R1593 |
T2844 |
T2845 |
det |
the,strand |
R1594 |
T2845 |
T2843 |
pobj |
strand,on |
R1595 |
T2846 |
T2845 |
amod |
reverse,strand |
R1596 |
T2847 |
T2823 |
punct |
.,matched |
R1597 |
T2849 |
T2850 |
advmod |
Secondly,spliced |
R1598 |
T2851 |
T2850 |
punct |
", ",spliced |
R1599 |
T2852 |
T2853 |
amod |
genomic,contamination |
R1600 |
T2853 |
T2854 |
nsubj |
contamination,is |
R1601 |
T2854 |
T2850 |
ccomp |
is,spliced |
R1602 |
T2855 |
T2854 |
acomp |
rare,is |
R1603 |
T2856 |
T2850 |
punct |
: ,spliced |
R1604 |
T2857 |
T2858 |
advmod |
when,aligned |
R1605 |
T2858 |
T2850 |
advcl |
aligned,spliced |
R1606 |
T2859 |
T2860 |
det |
the,sequences |
R1607 |
T2860 |
T2858 |
nsubjpass |
sequences,aligned |
R1608 |
T2861 |
T2860 |
nummod |
83,sequences |
R1609 |
T2862 |
T2863 |
amod |
olfactory,receptor |
R1610 |
T2863 |
T2864 |
npadvmod |
receptor,containing |
R1611 |
T2864 |
T2860 |
amod |
containing,sequences |
R1612 |
T2865 |
T2864 |
punct |
-,containing |
R1613 |
T2866 |
T2867 |
dep |
that,had |
R1614 |
T2867 |
T2860 |
relcl |
had,sequences |
R1615 |
T2868 |
T2869 |
det |
a,UTR |
R1616 |
T2869 |
T2867 |
dobj |
UTR,had |
R1617 |
T2870 |
T2869 |
nummod |
5,UTR |
R1618 |
T2871 |
T2870 |
punct |
',5 |
R1619 |
T2872 |
T2869 |
prep |
of,UTR |
R1620 |
T2873 |
T2874 |
nummod |
400,bp |
R1621 |
T2874 |
T2872 |
pobj |
bp,of |
R1622 |
T2875 |
T2876 |
cc |
or,longer |
R1623 |
T2876 |
T2874 |
nummod |
longer,bp |
R1624 |
T2877 |
T2858 |
auxpass |
were,aligned |
R1625 |
T2878 |
T2858 |
prep |
to,aligned |
R1626 |
T2879 |
T2880 |
amod |
genomic,sequence |
R1627 |
T2880 |
T2878 |
pobj |
sequence,to |
R1628 |
T2881 |
T2850 |
punct |
", ",spliced |
R1629 |
T2882 |
T2850 |
nsubj |
80,spliced |
R1630 |
T2883 |
T2850 |
prep |
across,spliced |
R1631 |
T2884 |
T2885 |
advmod |
at,one |
R1632 |
T2885 |
T2887 |
nummod |
one,intron |
R1633 |
T2886 |
T2885 |
advmod |
least,one |
R1634 |
T2887 |
T2883 |
pobj |
intron,across |
R1635 |
T2888 |
T2850 |
punct |
", ",spliced |
R1636 |
T2889 |
T2850 |
advcl |
leaving,spliced |
R1637 |
T2890 |
T2891 |
det |
a,maximum |
R1638 |
T2891 |
T2889 |
dobj |
maximum,leaving |
R1639 |
T2892 |
T2891 |
prep |
of,maximum |
R1640 |
T2893 |
T2894 |
nummod |
three,clones |
R1641 |
T2894 |
T2892 |
pobj |
clones,of |
R1642 |
T2895 |
T2896 |
punct |
(,% |
R1643 |
T2896 |
T2894 |
parataxis |
%,clones |
R1644 |
T2897 |
T2896 |
nummod |
3.6,% |
R1645 |
T2898 |
T2896 |
punct |
),% |
R1646 |
T2899 |
T2900 |
dep |
that,represent |
R1647 |
T2900 |
T2894 |
relcl |
represent,clones |
R1648 |
T2901 |
T2900 |
advmod |
potentially,represent |
R1649 |
T2902 |
T2903 |
amod |
genomic,contamination |
R1650 |
T2903 |
T2900 |
dobj |
contamination,represent |
R1651 |
T2904 |
T2903 |
prep |
of,contamination |
R1652 |
T2905 |
T2906 |
det |
the,libraries |
R1653 |
T2906 |
T2904 |
pobj |
libraries,of |
R1654 |
T2907 |
T2850 |
punct |
.,spliced |
R1655 |
T2909 |
T2910 |
advmod |
Thirdly,contain |
R1656 |
T2911 |
T2910 |
punct |
", ",contain |
R1657 |
T2912 |
T2913 |
amod |
most,clones |
R1658 |
T2913 |
T2914 |
nsubj |
clones,are |
R1659 |
T2914 |
T2910 |
ccomp |
are,contain |
R1660 |
T2915 |
T2914 |
prep |
of,are |
R1661 |
T2916 |
T2917 |
det |
a,length |
R1662 |
T2917 |
T2915 |
pobj |
length,of |
R1663 |
T2918 |
T2917 |
amod |
reasonable,length |
R1664 |
T2919 |
T2910 |
punct |
: ,contain |
R1665 |
T2920 |
T2921 |
mark |
although,determine |
R1666 |
T2921 |
T2910 |
advcl |
determine,contain |
R1667 |
T2922 |
T2921 |
nsubj |
we,determine |
R1668 |
T2923 |
T2921 |
aux |
did,determine |
R1669 |
T2924 |
T2921 |
neg |
not,determine |
R1670 |
T2925 |
T2926 |
mark |
whether,are |
R1671 |
T2926 |
T2921 |
ccomp |
are,determine |
R1672 |
T2927 |
T2926 |
nsubj |
clones,are |
R1673 |
T2928 |
T2929 |
amod |
full,length |
R1674 |
T2929 |
T2926 |
attr |
length,are |
R1675 |
T2930 |
T2929 |
punct |
-,length |
R1676 |
T2931 |
T2910 |
punct |
", ",contain |
R1677 |
T2932 |
T2933 |
quantmod |
881,"1,264" |
R1678 |
T2933 |
T2935 |
nummod |
"1,264",cDNAs |
R1679 |
T2934 |
T2933 |
quantmod |
of,"1,264" |
R1680 |
T2935 |
T2910 |
nsubj |
cDNAs,contain |
R1681 |
T2936 |
T2937 |
punct |
(,% |
R1682 |
T2937 |
T2933 |
parataxis |
%,"1,264" |
R1683 |
T2938 |
T2937 |
nummod |
70,% |
R1684 |
T2939 |
T2937 |
punct |
),% |
R1685 |
T2940 |
T2941 |
amod |
olfactory,receptor |
R1686 |
T2941 |
T2935 |
compound |
receptor,cDNAs |
R1687 |
T2942 |
T2943 |
det |
the,gene |
R1688 |
T2943 |
T2944 |
poss |
gene,codon |
R1689 |
T2944 |
T2910 |
dobj |
codon,contain |
R1690 |
T2945 |
T2943 |
case |
's,gene |
R1691 |
T2946 |
T2944 |
compound |
start,codon |
R1692 |
T2947 |
T2944 |
cc |
and,codon |
R1693 |
T2948 |
T2949 |
advmod |
at,least |
R1694 |
T2949 |
T2950 |
advmod |
least,sequence |
R1695 |
T2950 |
T2944 |
conj |
sequence,codon |
R1696 |
T2951 |
T2950 |
det |
some,sequence |
R1697 |
T2952 |
T2953 |
nummod |
5,UTR |
R1698 |
T2953 |
T2950 |
compound |
UTR,sequence |
R1699 |
T2954 |
T2952 |
punct |
',5 |
R1700 |
T2955 |
T2910 |
punct |
.,contain |
R1701 |
T2957 |
T2958 |
prep |
In,updated |
R1702 |
T2959 |
T2957 |
pobj |
order,In |
R1703 |
T2960 |
T2961 |
aux |
to,match |
R1704 |
T2961 |
T2959 |
acl |
match,order |
R1705 |
T2962 |
T2961 |
dobj |
cDNAs,match |
R1706 |
T2963 |
T2961 |
prep |
to,match |
R1707 |
T2964 |
T2965 |
poss |
their,counterparts |
R1708 |
T2965 |
T2963 |
pobj |
counterparts,to |
R1709 |
T2966 |
T2965 |
amod |
genomic,counterparts |
R1710 |
T2967 |
T2958 |
punct |
", ",updated |
R1711 |
T2968 |
T2958 |
advmod |
first,updated |
R1712 |
T2969 |
T2958 |
nsubj |
we,updated |
R1713 |
T2970 |
T2971 |
poss |
our,catalog |
R1714 |
T2971 |
T2958 |
dobj |
catalog,updated |
R1715 |
T2972 |
T2971 |
prep |
of,catalog |
R1716 |
T2973 |
T2974 |
nmod |
mouse,genes |
R1717 |
T2974 |
T2972 |
pobj |
genes,of |
R1718 |
T2975 |
T2976 |
amod |
olfactory,receptor |
R1719 |
T2976 |
T2974 |
compound |
receptor,genes |
R1720 |
T2977 |
T2978 |
punct |
[,1 |
R1721 |
T2978 |
T2971 |
parataxis |
1,catalog |
R1722 |
T2979 |
T2978 |
punct |
],1 |
R1723 |
T2980 |
T2958 |
prep |
based,updated |
R1724 |
T2981 |
T2980 |
prep |
on,based |
R1725 |
T2982 |
T2983 |
poss |
Celera,assembly |
R1726 |
T2983 |
T2981 |
pobj |
assembly,on |
R1727 |
T2984 |
T2982 |
case |
's,Celera |
R1728 |
T2985 |
T2986 |
advmod |
most,recent |
R1729 |
T2986 |
T2983 |
amod |
recent,assembly |
R1730 |
T2987 |
T2983 |
compound |
genome,assembly |
R1731 |
T2988 |
T2989 |
punct |
(,Release |
R1732 |
T2989 |
T2983 |
parataxis |
Release,assembly |
R1733 |
T2990 |
T2989 |
nummod |
13,Release |
R1734 |
T2991 |
T2989 |
punct |
),Release |
R1735 |
T2992 |
T2993 |
punct |
[,29 |
R1736 |
T2993 |
T2983 |
parataxis |
29,assembly |
R1737 |
T2994 |
T2993 |
punct |
],29 |
R1738 |
T2995 |
T2958 |
punct |
.,updated |
R1739 |
T2997 |
T2998 |
amod |
Previous,reports |
R1740 |
T2998 |
T2999 |
nsubjpass |
reports,based |
R1741 |
T3000 |
T2998 |
prep |
of,reports |
R1742 |
T3001 |
T3002 |
det |
the,repertoire |
R1743 |
T3002 |
T3000 |
pobj |
repertoire,of |
R1744 |
T3003 |
T3004 |
nmod |
mouse,receptor |
R1745 |
T3004 |
T3002 |
compound |
receptor,repertoire |
R1746 |
T3005 |
T3004 |
amod |
olfactory,receptor |
R1747 |
T3006 |
T3007 |
punct |
[,2 |
R1748 |
T3007 |
T2998 |
parataxis |
2,reports |
R1749 |
T3008 |
T3007 |
nummod |
1,2 |
R1750 |
T3009 |
T3007 |
punct |
",",2 |
R1751 |
T3010 |
T3007 |
punct |
],2 |
R1752 |
T3011 |
T2999 |
auxpass |
were,based |
R1753 |
T3012 |
T2999 |
prep |
on,based |
R1754 |
T3013 |
T3014 |
det |
the,assembly |
R1755 |
T3014 |
T3012 |
pobj |
assembly,on |
R1756 |
T3015 |
T3014 |
nmod |
Release,assembly |
R1757 |
T3016 |
T3015 |
nummod |
12,Release |
R1758 |
T3017 |
T2999 |
punct |
.,based |
R1759 |
T3019 |
T3020 |
nsubj |
Release,consists |
R1760 |
T3021 |
T3019 |
nummod |
13,Release |
R1761 |
T3022 |
T3020 |
prep |
of,consists |
R1762 |
T3023 |
T3024 |
amod |
fewer,longer |
R1763 |
T3024 |
T3026 |
amod |
longer,sequences |
R1764 |
T3025 |
T3024 |
punct |
", ",longer |
R1765 |
T3026 |
T3022 |
pobj |
sequences,of |
R1766 |
T3027 |
T3026 |
compound |
scaffold,sequences |
R1767 |
T3028 |
T3026 |
acl |
containing,sequences |
R1768 |
T3029 |
T3030 |
amod |
fewer,smaller |
R1769 |
T3030 |
T3032 |
amod |
smaller,gaps |
R1770 |
T3031 |
T3030 |
punct |
", ",smaller |
R1771 |
T3032 |
T3028 |
dobj |
gaps,containing |
R1772 |
T3033 |
T3032 |
prep |
than,gaps |
R1773 |
T3034 |
T3033 |
pobj |
Release,than |
R1774 |
T3035 |
T3034 |
nummod |
12,Release |
R1775 |
T3036 |
T3020 |
punct |
.,consists |
R1776 |
T3038 |
T3039 |
advcl |
Using,identified |
R1777 |
T3040 |
T3041 |
det |
the,methods |
R1778 |
T3041 |
T3038 |
dobj |
methods,Using |
R1779 |
T3042 |
T3043 |
npadvmod |
BLAST,based |
R1780 |
T3043 |
T3041 |
amod |
based,methods |
R1781 |
T3044 |
T3043 |
punct |
-,based |
R1782 |
T3045 |
T3041 |
acl |
detailed,methods |
R1783 |
T3046 |
T3045 |
advmod |
previously,detailed |
R1784 |
T3047 |
T3048 |
punct |
[,1 |
R1785 |
T3048 |
T3045 |
parataxis |
1,detailed |
R1786 |
T3049 |
T3048 |
punct |
],1 |
R1787 |
T3050 |
T3039 |
punct |
", ",identified |
R1788 |
T3051 |
T3039 |
nsubj |
we,identified |
R1789 |
T3052 |
T3053 |
nummod |
"1,490",sequences |
R1790 |
T3053 |
T3039 |
dobj |
sequences,identified |
R1791 |
T3054 |
T3055 |
amod |
olfactory,receptor |
R1792 |
T3055 |
T3053 |
compound |
receptor,sequences |
R1793 |
T3056 |
T3039 |
prep |
in,identified |
R1794 |
T3057 |
T3058 |
det |
the,assembly |
R1795 |
T3058 |
T3056 |
pobj |
assembly,in |
R1796 |
T3059 |
T3058 |
amod |
new,assembly |
R1797 |
T3060 |
T3039 |
punct |
", ",identified |
R1798 |
T3061 |
T3039 |
prep |
including,identified |
R1799 |
T3062 |
T3063 |
nummod |
"1,107",genes |
R1800 |
T3063 |
T3061 |
pobj |
genes,including |
R1801 |
T3064 |
T3063 |
amod |
intact,genes |
R1802 |
T3065 |
T3066 |
amod |
olfactory,receptor |
R1803 |
T3066 |
T3063 |
compound |
receptor,genes |
R1804 |
T3067 |
T3039 |
punct |
(,identified |
R1805 |
T3068 |
T3039 |
prep |
compared,identified |
R1806 |
T3069 |
T3068 |
prep |
to,compared |
R1807 |
T3070 |
T3071 |
nummod |
866,receptors |
R1808 |
T3071 |
T3069 |
pobj |
receptors,to |
R1809 |
T3072 |
T3071 |
amod |
intact,receptors |
R1810 |
T3073 |
T3071 |
amod |
olfactory,receptors |
R1811 |
T3074 |
T3071 |
prep |
in,receptors |
R1812 |
T3075 |
T3076 |
det |
the,assembly |
R1813 |
T3076 |
T3074 |
pobj |
assembly,in |
R1814 |
T3077 |
T3076 |
amod |
old,assembly |
R1815 |
T3078 |
T3039 |
punct |
),identified |
R1816 |
T3079 |
T3039 |
advcl |
reflecting,identified |
R1817 |
T3080 |
T3081 |
det |
the,rate |
R1818 |
T3081 |
T3079 |
dobj |
rate,reflecting |
R1819 |
T3082 |
T3081 |
amod |
reduced,rate |
R1820 |
T3083 |
T3084 |
compound |
sequence,error |
R1821 |
T3084 |
T3081 |
compound |
error,rate |
R1822 |
T3085 |
T3081 |
cc |
and,rate |
R1823 |
T3086 |
T3087 |
amod |
increased,coverage |
R1824 |
T3087 |
T3081 |
conj |
coverage,rate |
R1825 |
T3088 |
T3087 |
prep |
of,coverage |
R1826 |
T3089 |
T3090 |
det |
the,assembly |
R1827 |
T3090 |
T3088 |
pobj |
assembly,of |
R1828 |
T3091 |
T3090 |
amod |
new,assembly |
R1829 |
T3092 |
T3093 |
punct |
(,Table |
R1830 |
T3093 |
T3079 |
parataxis |
Table,reflecting |
R1831 |
T3094 |
T3093 |
nummod |
1,Table |
R1832 |
T3095 |
T3093 |
punct |
),Table |
R1833 |
T3096 |
T3039 |
punct |
.,identified |
R1834 |
T3098 |
T3099 |
nsubj |
We,created |
R1835 |
T3100 |
T3101 |
det |
a,database |
R1836 |
T3101 |
T3099 |
dobj |
database,created |
R1837 |
T3102 |
T3101 |
amod |
local,database |
R1838 |
T3103 |
T3101 |
prep |
of,database |
R1839 |
T3104 |
T3105 |
amod |
genomic,sequences |
R1840 |
T3105 |
T3103 |
pobj |
sequences,of |
R1841 |
T3106 |
T3101 |
prep |
including,database |
R1842 |
T3107 |
T3108 |
det |
all,loci |
R1843 |
T3108 |
T3106 |
pobj |
loci,including |
R1844 |
T3109 |
T3110 |
amod |
olfactory,receptor |
R1845 |
T3110 |
T3108 |
compound |
receptor,loci |
R1846 |
T3111 |
T3108 |
cc |
and,loci |
R1847 |
T3112 |
T3113 |
nummod |
0.5,Mb |
R1848 |
T3113 |
T3114 |
compound |
Mb,sequences |
R1849 |
T3114 |
T3108 |
conj |
sequences,loci |
R1850 |
T3115 |
T3114 |
compound |
flanking,sequences |
R1851 |
T3116 |
T3117 |
punct |
(,available |
R1852 |
T3117 |
T3114 |
parataxis |
available,sequences |
R1853 |
T3118 |
T3117 |
mark |
if,available |
R1854 |
T3119 |
T3117 |
punct |
),available |
R1855 |
T3120 |
T3099 |
cc |
and,created |
R1856 |
T3121 |
T3099 |
conj |
compared,created |
R1857 |
T3122 |
T3123 |
det |
each,sequence |
R1858 |
T3123 |
T3121 |
dobj |
sequence,compared |
R1859 |
T3124 |
T3123 |
compound |
cDNA,sequence |
R1860 |
T3125 |
T3121 |
prep |
to,compared |
R1861 |
T3126 |
T3127 |
det |
this,database |
R1862 |
T3127 |
T3125 |
pobj |
database,to |
R1863 |
T3128 |
T3127 |
punct |
',database |
R1864 |
T3129 |
T3130 |
amod |
olfactory,subgenome |
R1865 |
T3130 |
T3127 |
nmod |
subgenome,database |
R1866 |
T3131 |
T3127 |
punct |
',database |
R1867 |
T3132 |
T3121 |
advcl |
using,compared |
R1868 |
T3133 |
T3132 |
dobj |
sim4,using |
R1869 |
T3134 |
T3135 |
punct |
[,30 |
R1870 |
T3135 |
T3121 |
parataxis |
30,compared |
R1871 |
T3136 |
T3135 |
punct |
],30 |
R1872 |
T3137 |
T3099 |
punct |
.,created |
R1873 |
T3139 |
T3140 |
nsubjpass |
cDNAs,assigned |
R1874 |
T3141 |
T3140 |
auxpass |
were,assigned |
R1875 |
T3142 |
T3140 |
prep |
to,assigned |
R1876 |
T3143 |
T3144 |
amod |
individual,genes |
R1877 |
T3144 |
T3142 |
pobj |
genes,to |
R1878 |
T3145 |
T3140 |
prep |
based,assigned |
R1879 |
T3146 |
T3145 |
prep |
on,based |
R1880 |
T3147 |
T3148 |
poss |
their,match |
R1881 |
T3148 |
T3146 |
pobj |
match,on |
R1882 |
T3149 |
T3148 |
amod |
best,match |
R1883 |
T3150 |
T3148 |
prep |
to,match |
R1884 |
T3151 |
T3152 |
det |
an,region |
R1885 |
T3152 |
T3150 |
pobj |
region,to |
R1886 |
T3153 |
T3154 |
amod |
olfactory,receptor |
R1887 |
T3154 |
T3152 |
compound |
receptor,region |
R1888 |
T3155 |
T3152 |
compound |
coding,region |
R1889 |
T3156 |
T3152 |
cc |
or,region |
R1890 |
T3157 |
T3158 |
poss |
its,region |
R1891 |
T3158 |
T3152 |
conj |
region,region |
R1892 |
T3159 |
T3158 |
amod |
upstream,region |
R1893 |
T3160 |
T3161 |
punct |
(,see |
R1894 |
T3161 |
T3140 |
parataxis |
see,assigned |
R1895 |
T3162 |
T3161 |
dobj |
Materials,see |
R1896 |
T3163 |
T3162 |
cc |
and,Materials |
R1897 |
T3164 |
T3162 |
conj |
methods,Materials |
R1898 |
T3165 |
T3161 |
punct |
),see |
R1899 |
T3166 |
T3140 |
punct |
.,assigned |
R1900 |
T3168 |
T3169 |
prep |
Of,matched |
R1901 |
T3169 |
T3177 |
ccomp |
matched,matched |
R1902 |
T3170 |
T3171 |
det |
the,cDNAs |
R1903 |
T3171 |
T3168 |
pobj |
cDNAs,Of |
R1904 |
T3172 |
T3171 |
nummod |
"1,264",cDNAs |
R1905 |
T3173 |
T3174 |
amod |
olfactory,receptor |
R1906 |
T3174 |
T3171 |
compound |
receptor,cDNAs |
R1907 |
T3175 |
T3169 |
punct |
", ",matched |
R1908 |
T3176 |
T3169 |
nsubj |
"1,176",matched |
R1909 |
T3178 |
T3179 |
det |
a,total |
R1910 |
T3179 |
T3169 |
dobj |
total,matched |
R1911 |
T3180 |
T3179 |
prep |
of,total |
R1912 |
T3181 |
T3182 |
nummod |
419,genes |
R1913 |
T3182 |
T3180 |
pobj |
genes,of |
R1914 |
T3183 |
T3184 |
amod |
olfactory,receptor |
R1915 |
T3184 |
T3182 |
compound |
receptor,genes |
R1916 |
T3185 |
T3177 |
punct |
;,matched |
R1917 |
T3186 |
T3187 |
det |
the,cDNAs |
R1918 |
T3187 |
T3177 |
nsubj |
cDNAs,matched |
R1919 |
T3188 |
T3187 |
amod |
remaining,cDNAs |
R1920 |
T3189 |
T3177 |
preconj |
either,matched |
R1921 |
T3190 |
T3191 |
det |
an,receptor |
R1922 |
T3191 |
T3177 |
dobj |
receptor,matched |
R1923 |
T3192 |
T3191 |
amod |
olfactory,receptor |
R1924 |
T3193 |
T3177 |
prep |
below,matched |
R1925 |
T3194 |
T3195 |
poss |
our,threshold |
R1926 |
T3195 |
T3193 |
pobj |
threshold,below |
R1927 |
T3196 |
T3197 |
nummod |
96,% |
R1928 |
T3197 |
T3198 |
compound |
%,identity |
R1929 |
T3198 |
T3195 |
compound |
identity,threshold |
R1930 |
T3199 |
T3198 |
compound |
nucleotide,identity |
R1931 |
T3200 |
T3177 |
cc |
or,matched |
R1932 |
T3201 |
T3177 |
conj |
had,matched |
R1933 |
T3202 |
T3203 |
amod |
ambiguous,matches |
R1934 |
T3203 |
T3201 |
dobj |
matches,had |
R1935 |
T3204 |
T3203 |
acl |
encompassing,matches |
R1936 |
T3205 |
T3206 |
amod |
more,one |
R1937 |
T3206 |
T3208 |
nummod |
one,region |
R1938 |
T3207 |
T3206 |
quantmod |
than,one |
R1939 |
T3208 |
T3204 |
dobj |
region,encompassing |
R1940 |
T3209 |
T3210 |
amod |
olfactory,receptor |
R1941 |
T3210 |
T3211 |
compound |
receptor,gene |
R1942 |
T3211 |
T3208 |
compound |
gene,region |
R1943 |
T3212 |
T3213 |
punct |
(,see |
R1944 |
T3213 |
T3201 |
parataxis |
see,had |
R1945 |
T3214 |
T3213 |
advmod |
below,see |
R1946 |
T3215 |
T3213 |
punct |
),see |
R1947 |
T3216 |
T3177 |
punct |
.,matched |
R1950 |
T3520 |
T3521 |
det |
A,primer |
R1951 |
T3521 |
T3527 |
nsubj |
primer,broadens |
R1952 |
T3522 |
T3521 |
nmod |
class,primer |
R1953 |
T3523 |
T3522 |
nummod |
I,class |
R1954 |
T3524 |
T3525 |
amod |
olfactory,receptor |
R1955 |
T3525 |
T3521 |
nmod |
receptor,primer |
R1956 |
T3526 |
T3521 |
amod |
degenerate,primer |
R1957 |
T3528 |
T3529 |
amod |
phylogenetic,distribution |
R1958 |
T3529 |
T3527 |
dobj |
distribution,broadens |
R1959 |
T3530 |
T3529 |
prep |
of,distribution |
R1960 |
T3531 |
T3532 |
amod |
confirmed,genes |
R1961 |
T3532 |
T3530 |
pobj |
genes,of |
R1962 |
T3533 |
T3534 |
amod |
olfactory,receptor |
R1963 |
T3534 |
T3532 |
compound |
receptor,genes |
R1964 |
T3536 |
T3537 |
amod |
Previous,analyses |
R1965 |
T3537 |
T3538 |
nsubj |
analyses,define |
R1966 |
T3539 |
T3537 |
prep |
of,analyses |
R1967 |
T3540 |
T3541 |
det |
the,family |
R1968 |
T3541 |
T3539 |
pobj |
family,of |
R1969 |
T3542 |
T3541 |
amod |
mammalian,family |
R1970 |
T3543 |
T3544 |
amod |
olfactory,receptor |
R1971 |
T3544 |
T3541 |
compound |
receptor,family |
R1972 |
T3545 |
T3546 |
nummod |
two,clades |
R1973 |
T3546 |
T3538 |
dobj |
clades,define |
R1974 |
T3547 |
T3546 |
amod |
major,clades |
R1975 |
T3548 |
T3546 |
amod |
phylogenetic,clades |
R1976 |
T3549 |
T3546 |
punct |
", ",clades |
R1977 |
T3550 |
T3546 |
acl |
referred,clades |
R1978 |
T3551 |
T3550 |
prep |
to,referred |
R1979 |
T3552 |
T3550 |
prep |
as,referred |
R1980 |
T3553 |
T3554 |
nmod |
class,I |
R1981 |
T3554 |
T3555 |
nummod |
I,receptors |
R1982 |
T3555 |
T3552 |
pobj |
receptors,as |
R1983 |
T3556 |
T3554 |
cc |
and,I |
R1984 |
T3557 |
T3554 |
conj |
II,I |
R1985 |
T3558 |
T3555 |
amod |
olfactory,receptors |
R1986 |
T3559 |
T3538 |
punct |
", ",define |
R1987 |
T3560 |
T3538 |
cc |
and,define |
R1988 |
T3561 |
T3538 |
conj |
suggest,define |
R1989 |
T3562 |
T3563 |
mark |
that,are |
R1990 |
T3563 |
T3561 |
ccomp |
are,suggest |
R1991 |
T3564 |
T3565 |
nmod |
class,receptors |
R1992 |
T3565 |
T3563 |
nsubj |
receptors,are |
R1993 |
T3566 |
T3564 |
nummod |
I,class |
R1994 |
T3567 |
T3565 |
amod |
olfactory,receptors |
R1995 |
T3568 |
T3569 |
advmod |
more,similar |
R1996 |
T3569 |
T3563 |
acomp |
similar,are |
R1997 |
T3570 |
T3569 |
prep |
to,similar |
R1998 |
T3571 |
T3572 |
nmod |
fish,receptors |
R1999 |
T3572 |
T3570 |
pobj |
receptors,to |
R2000 |
T3573 |
T3572 |
amod |
olfactory,receptors |
R2001 |
T3574 |
T3575 |
mark |
than,are |
R2002 |
T3575 |
T3569 |
advcl |
are,similar |
R2003 |
T3576 |
T3577 |
compound |
class,IIs |
R2004 |
T3577 |
T3575 |
nsubj |
IIs,are |
R2005 |
T3578 |
T3579 |
punct |
[,5 |
R2006 |
T3579 |
T3561 |
parataxis |
5,suggest |
R2007 |
T3580 |
T3579 |
punct |
],5 |
R2008 |
T3581 |
T3538 |
punct |
.,define |
R2009 |
T3583 |
T3584 |
nsubj |
Figure,illustrates |
R2010 |
T3585 |
T3583 |
nummod |
1,Figure |
R2011 |
T3586 |
T3587 |
det |
the,diversity |
R2012 |
T3587 |
T3584 |
dobj |
diversity,illustrates |
R2013 |
T3588 |
T3587 |
amod |
phylogenetic,diversity |
R2014 |
T3589 |
T3587 |
prep |
of,diversity |
R2015 |
T3590 |
T3591 |
poss |
our,collection |
R2016 |
T3591 |
T3589 |
pobj |
collection,of |
R2017 |
T3592 |
T3591 |
compound |
cDNA,collection |
R2018 |
T3593 |
T3584 |
punct |
", ",illustrates |
R2019 |
T3594 |
T3584 |
advcl |
showing,illustrates |
R2020 |
T3595 |
T3596 |
mark |
that,confirmed |
R2021 |
T3596 |
T3594 |
ccomp |
confirmed,showing |
R2022 |
T3597 |
T3596 |
nsubj |
we,confirmed |
R2023 |
T3598 |
T3596 |
aux |
have,confirmed |
R2024 |
T3599 |
T3596 |
dobj |
expression,confirmed |
R2025 |
T3600 |
T3599 |
prep |
of,expression |
R2026 |
T3601 |
T3602 |
advmod |
at,one |
R2027 |
T3602 |
T3604 |
nummod |
one,gene |
R2028 |
T3603 |
T3602 |
advmod |
least,one |
R2029 |
T3604 |
T3600 |
pobj |
gene,of |
R2030 |
T3605 |
T3606 |
amod |
olfactory,receptor |
R2031 |
T3606 |
T3604 |
compound |
receptor,gene |
R2032 |
T3607 |
T3599 |
prep |
in,expression |
R2033 |
T3608 |
T3609 |
det |
each,clade |
R2034 |
T3609 |
T3607 |
pobj |
clade,in |
R2035 |
T3610 |
T3609 |
amod |
major,clade |
R2036 |
T3611 |
T3609 |
prep |
of,clade |
R2037 |
T3612 |
T3613 |
det |
the,genes |
R2038 |
T3613 |
T3611 |
pobj |
genes,of |
R2039 |
T3614 |
T3613 |
nmod |
class,genes |
R2040 |
T3615 |
T3614 |
nummod |
II,class |
R2041 |
T3616 |
T3617 |
amod |
olfactory,receptor |
R2042 |
T3617 |
T3613 |
compound |
receptor,genes |
R2043 |
T3618 |
T3599 |
punct |
", ",expression |
R2044 |
T3619 |
T3599 |
cc |
or,expression |
R2045 |
T3620 |
T3621 |
quantmod |
391,983 |
R2046 |
T3621 |
T3599 |
conj |
983,expression |
R2047 |
T3622 |
T3621 |
quantmod |
out,983 |
R2048 |
T3623 |
T3621 |
quantmod |
of,983 |
R2049 |
T3624 |
T3625 |
punct |
(,% |
R2050 |
T3625 |
T3621 |
parataxis |
%,983 |
R2051 |
T3626 |
T3625 |
nummod |
40,% |
R2052 |
T3627 |
T3625 |
punct |
),% |
R2053 |
T3628 |
T3621 |
prep |
of,983 |
R2054 |
T3629 |
T3630 |
det |
all,genes |
R2055 |
T3630 |
T3628 |
pobj |
genes,of |
R2056 |
T3631 |
T3630 |
amod |
intact,genes |
R2057 |
T3632 |
T3630 |
nmod |
class,genes |
R2058 |
T3633 |
T3632 |
nummod |
II,class |
R2059 |
T3634 |
T3635 |
amod |
olfactory,receptor |
R2060 |
T3635 |
T3630 |
compound |
receptor,genes |
R2061 |
T3636 |
T3637 |
advmod |
where,are |
R2062 |
T3637 |
T3630 |
relcl |
are,genes |
R2063 |
T3638 |
T3639 |
amod |
full,length |
R2064 |
T3639 |
T3641 |
nmod |
length,data |
R2065 |
T3640 |
T3639 |
punct |
-,length |
R2066 |
T3641 |
T3637 |
nsubj |
data,are |
R2067 |
T3642 |
T3643 |
amod |
genomic,sequence |
R2068 |
T3643 |
T3641 |
compound |
sequence,data |
R2069 |
T3644 |
T3637 |
acomp |
available,are |
R2070 |
T3645 |
T3646 |
punct |
(,branches |
R2071 |
T3646 |
T3596 |
parataxis |
branches,confirmed |
R2072 |
T3647 |
T3646 |
amod |
blue,branches |
R2073 |
T3648 |
T3646 |
punct |
),branches |
R2074 |
T3649 |
T3584 |
punct |
.,illustrates |
R2075 |
T3651 |
T3652 |
det |
The,screen |
R2076 |
T3652 |
T3653 |
nsubj |
screen,appears |
R2077 |
T3654 |
T3653 |
advmod |
thus,appears |
R2078 |
T3655 |
T3656 |
advmod |
relatively,unbiased |
R2079 |
T3656 |
T3653 |
oprd |
unbiased,appears |
R2080 |
T3657 |
T3653 |
prep |
in,appears |
R2081 |
T3658 |
T3659 |
poss |
its,coverage |
R2082 |
T3659 |
T3657 |
pobj |
coverage,in |
R2083 |
T3660 |
T3659 |
prep |
of,coverage |
R2084 |
T3661 |
T3662 |
nmod |
class,receptors |
R2085 |
T3662 |
T3660 |
pobj |
receptors,of |
R2086 |
T3663 |
T3661 |
nummod |
II,class |
R2087 |
T3664 |
T3662 |
amod |
olfactory,receptors |
R2088 |
T3665 |
T3653 |
punct |
.,appears |
R2089 |
T3667 |
T3668 |
advmod |
However,provided |
R2090 |
T3669 |
T3668 |
punct |
", ",provided |
R2091 |
T3670 |
T3671 |
poss |
our,screen |
R2092 |
T3671 |
T3668 |
nsubj |
screen,provided |
R2093 |
T3672 |
T3671 |
amod |
random,screen |
R2094 |
T3673 |
T3668 |
dobj |
cDNAs,provided |
R2095 |
T3674 |
T3668 |
prep |
for,provided |
R2096 |
T3675 |
T3676 |
advmod |
only,124 |
R2097 |
T3676 |
T3680 |
nummod |
124,receptors |
R2098 |
T3677 |
T3676 |
quantmod |
two,124 |
R2099 |
T3678 |
T3676 |
quantmod |
out,124 |
R2100 |
T3679 |
T3676 |
quantmod |
of,124 |
R2101 |
T3680 |
T3674 |
pobj |
receptors,for |
R2102 |
T3681 |
T3680 |
amod |
intact,receptors |
R2103 |
T3682 |
T3680 |
punct |
", ",receptors |
R2104 |
T3683 |
T3684 |
amod |
full,length |
R2105 |
T3684 |
T3680 |
nmod |
length,receptors |
R2106 |
T3685 |
T3684 |
punct |
-,length |
R2107 |
T3686 |
T3680 |
nmod |
class,receptors |
R2108 |
T3687 |
T3686 |
nummod |
I,class |
R2109 |
T3688 |
T3680 |
amod |
olfactory,receptors |
R2110 |
T3689 |
T3668 |
punct |
.,provided |
R2111 |
T3691 |
T3692 |
prep |
In,used |
R2112 |
T3693 |
T3694 |
det |
an,attempt |
R2113 |
T3694 |
T3691 |
pobj |
attempt,In |
R2114 |
T3695 |
T3696 |
aux |
to,broaden |
R2115 |
T3696 |
T3694 |
acl |
broaden,attempt |
R2116 |
T3697 |
T3698 |
det |
the,coverage |
R2117 |
T3698 |
T3696 |
dobj |
coverage,broaden |
R2118 |
T3699 |
T3698 |
amod |
phylogenetic,coverage |
R2119 |
T3700 |
T3698 |
prep |
of,coverage |
R2120 |
T3701 |
T3702 |
poss |
our,screen |
R2121 |
T3702 |
T3700 |
pobj |
screen,of |
R2122 |
T3703 |
T3702 |
compound |
hybridization,screen |
R2123 |
T3704 |
T3692 |
punct |
", ",used |
R2124 |
T3705 |
T3692 |
nsubj |
we,used |
R2125 |
T3706 |
T3707 |
amod |
additional,probes |
R2126 |
T3707 |
T3692 |
dobj |
probes,used |
R2127 |
T3708 |
T3707 |
amod |
degenerate,probes |
R2128 |
T3709 |
T3692 |
prep |
on,used |
R2129 |
T3710 |
T3711 |
det |
the,library |
R2130 |
T3711 |
T3709 |
pobj |
library,on |
R2131 |
T3712 |
T3711 |
amod |
adult,library |
R2132 |
T3713 |
T3692 |
cc |
and,used |
R2133 |
T3714 |
T3692 |
conj |
screened,used |
R2134 |
T3715 |
T3716 |
det |
an,library |
R2135 |
T3716 |
T3714 |
dobj |
library,screened |
R2136 |
T3717 |
T3716 |
amod |
embryonic,library |
R2137 |
T3718 |
T3719 |
punct |
(,Table |
R2138 |
T3719 |
T3714 |
parataxis |
Table,screened |
R2139 |
T3720 |
T3719 |
nummod |
2,Table |
R2140 |
T3721 |
T3719 |
punct |
),Table |
R2141 |
T3722 |
T3692 |
punct |
.,used |
R2142 |
T3724 |
T3725 |
det |
These,experiments |
R2143 |
T3725 |
T3726 |
nsubj |
experiments,increase |
R2144 |
T3727 |
T3726 |
aux |
did,increase |
R2145 |
T3728 |
T3726 |
neg |
not,increase |
R2146 |
T3729 |
T3730 |
det |
the,diversity |
R2147 |
T3730 |
T3726 |
dobj |
diversity,increase |
R2148 |
T3731 |
T3730 |
prep |
of,diversity |
R2149 |
T3732 |
T3731 |
pobj |
clones,of |
R2150 |
T3733 |
T3732 |
acl |
identified,clones |
R2151 |
T3734 |
T3735 |
punct |
(,shown |
R2152 |
T3735 |
T3726 |
parataxis |
shown,increase |
R2153 |
T3736 |
T3735 |
neg |
not,shown |
R2154 |
T3737 |
T3735 |
punct |
),shown |
R2155 |
T3738 |
T3726 |
punct |
.,increase |
R2156 |
T3740 |
T3741 |
det |
This,underrepresentation |
R2157 |
T3741 |
T3745 |
nsubj |
underrepresentation,be |
R2158 |
T3742 |
T3741 |
amod |
severe,underrepresentation |
R2159 |
T3743 |
T3741 |
nmod |
class,underrepresentation |
R2160 |
T3744 |
T3743 |
nummod |
I,class |
R2161 |
T3746 |
T3745 |
aux |
could,be |
R2162 |
T3747 |
T3745 |
prep |
due,be |
R2163 |
T3748 |
T3747 |
pcomp |
to,due |
R2164 |
T3749 |
T3750 |
amod |
experimental,bias |
R2165 |
T3750 |
T3747 |
pobj |
bias,due |
R2166 |
T3751 |
T3750 |
punct |
-,bias |
R2167 |
T3752 |
T3753 |
det |
a,consequence |
R2168 |
T3753 |
T3750 |
appos |
consequence,bias |
R2169 |
T3754 |
T3753 |
prep |
of,consequence |
R2170 |
T3755 |
T3754 |
pcomp |
using,of |
R2171 |
T3756 |
T3757 |
amod |
degenerate,primers |
R2172 |
T3757 |
T3755 |
dobj |
primers,using |
R2173 |
T3758 |
T3759 |
aux |
to,create |
R2174 |
T3759 |
T3755 |
advcl |
create,using |
R2175 |
T3760 |
T3761 |
poss |
our,probe |
R2176 |
T3761 |
T3759 |
dobj |
probe,create |
R2177 |
T3762 |
T3761 |
compound |
hybridization,probe |
R2178 |
T3763 |
T3745 |
punct |
.,be |
R2179 |
T3765 |
T3766 |
advmod |
Alternatively,expressed |
R2180 |
T3767 |
T3766 |
punct |
", ",expressed |
R2181 |
T3768 |
T3769 |
nmod |
class,genes |
R2182 |
T3769 |
T3766 |
nsubjpass |
genes,expressed |
R2183 |
T3770 |
T3768 |
nummod |
I,class |
R2184 |
T3771 |
T3766 |
aux |
might,expressed |
R2185 |
T3772 |
T3766 |
auxpass |
be,expressed |
R2186 |
T3773 |
T3766 |
prep |
at,expressed |
R2187 |
T3774 |
T3775 |
advmod |
extremely,low |
R2188 |
T3775 |
T3776 |
amod |
low,levels |
R2189 |
T3776 |
T3773 |
pobj |
levels,at |
R2190 |
T3777 |
T3766 |
prep |
in,expressed |
R2191 |
T3778 |
T3779 |
det |
the,epithelium |
R2192 |
T3779 |
T3777 |
pobj |
epithelium,in |
R2193 |
T3780 |
T3779 |
amod |
olfactory,epithelium |
R2194 |
T3781 |
T3766 |
punct |
.,expressed |
R2195 |
T3783 |
T3784 |
prep |
In,designed |
R2196 |
T3785 |
T3783 |
pobj |
order,In |
R2197 |
T3786 |
T3787 |
aux |
to,determine |
R2198 |
T3787 |
T3785 |
acl |
determine,order |
R2199 |
T3788 |
T3789 |
mark |
whether,expressed |
R2200 |
T3789 |
T3787 |
ccomp |
expressed,determine |
R2201 |
T3790 |
T3791 |
nmod |
class,receptors |
R2202 |
T3791 |
T3789 |
nsubjpass |
receptors,expressed |
R2203 |
T3792 |
T3790 |
nummod |
I,class |
R2204 |
T3793 |
T3791 |
amod |
olfactory,receptors |
R2205 |
T3794 |
T3789 |
auxpass |
are,expressed |
R2206 |
T3795 |
T3789 |
prep |
in,expressed |
R2207 |
T3796 |
T3797 |
det |
the,epithelium |
R2208 |
T3797 |
T3795 |
pobj |
epithelium,in |
R2209 |
T3798 |
T3797 |
amod |
olfactory,epithelium |
R2210 |
T3799 |
T3784 |
punct |
", ",designed |
R2211 |
T3800 |
T3784 |
nsubj |
we,designed |
R2212 |
T3801 |
T3802 |
det |
a,primer |
R2213 |
T3802 |
T3784 |
dobj |
primer,designed |
R2214 |
T3803 |
T3804 |
amod |
reverse,strand |
R2215 |
T3804 |
T3802 |
nmod |
strand,primer |
R2216 |
T3805 |
T3804 |
punct |
-,strand |
R2217 |
T3806 |
T3802 |
amod |
degenerate,primer |
R2218 |
T3807 |
T3808 |
aux |
to,recognize |
R2219 |
T3808 |
T3784 |
advcl |
recognize,designed |
R2220 |
T3809 |
T3810 |
det |
a,motif |
R2221 |
T3810 |
T3808 |
dobj |
motif,recognize |
R2222 |
T3811 |
T3810 |
prep |
in,motif |
R2223 |
T3812 |
T3813 |
compound |
transmembrane,domain |
R2224 |
T3813 |
T3811 |
pobj |
domain,in |
R2225 |
T3814 |
T3813 |
nummod |
7,domain |
R2226 |
T3815 |
T3816 |
punct |
(,NP |
R2227 |
T3816 |
T3813 |
parataxis |
NP,domain |
R2228 |
T3817 |
T3816 |
dep |
PP,NP |
R2229 |
T3818 |
T3816 |
punct |
{,NP |
R2230 |
T3819 |
T3820 |
compound |
V,T |
R2231 |
T3820 |
T3816 |
dep |
T,NP |
R2232 |
T3821 |
T3820 |
punct |
/,T |
R2233 |
T3822 |
T3820 |
compound |
M,T |
R2234 |
T3823 |
T3820 |
punct |
/,T |
R2235 |
T3824 |
T3820 |
compound |
A,T |
R2236 |
T3825 |
T3820 |
punct |
/,T |
R2237 |
T3826 |
T3816 |
advmod |
},NP |
R2238 |
T3827 |
T3816 |
punct |
{,NP |
R2239 |
T3828 |
T3829 |
compound |
F,M |
R2240 |
T3829 |
T3816 |
dep |
M,NP |
R2241 |
T3830 |
T3829 |
punct |
/,M |
R2242 |
T3831 |
T3829 |
compound |
L,M |
R2243 |
T3832 |
T3829 |
punct |
/,M |
R2244 |
T3833 |
T3829 |
compound |
I,M |
R2245 |
T3834 |
T3829 |
punct |
/,M |
R2246 |
T3835 |
T3816 |
advmod |
},NP |
R2247 |
T3836 |
T3816 |
punct |
),NP |
R2248 |
T3837 |
T3810 |
acl |
enriched,motif |
R2249 |
T3838 |
T3837 |
prep |
among,enriched |
R2250 |
T3839 |
T3840 |
nmod |
class,sequences |
R2251 |
T3840 |
T3838 |
pobj |
sequences,among |
R2252 |
T3841 |
T3839 |
nummod |
I,class |
R2253 |
T3842 |
T3843 |
amod |
olfactory,receptor |
R2254 |
T3843 |
T3840 |
compound |
receptor,sequences |
R2255 |
T3844 |
T3784 |
punct |
.,designed |
R2256 |
T3846 |
T3847 |
nsubjpass |
Most,shared |
R2257 |
T3848 |
T3846 |
prep |
of,Most |
R2258 |
T3849 |
T3850 |
det |
the,motif |
R2259 |
T3850 |
T3848 |
pobj |
motif,of |
R2260 |
T3851 |
T3847 |
auxpass |
is,shared |
R2261 |
T3852 |
T3847 |
prep |
among,shared |
R2262 |
T3853 |
T3854 |
det |
all,receptors |
R2263 |
T3854 |
T3852 |
pobj |
receptors,among |
R2264 |
T3855 |
T3854 |
amod |
olfactory,receptors |
R2265 |
T3856 |
T3847 |
punct |
", ",shared |
R2266 |
T3857 |
T3847 |
cc |
but,shared |
R2267 |
T3858 |
T3859 |
det |
the,residue |
R2268 |
T3859 |
T3862 |
nsubjpass |
residue,found |
R2269 |
T3860 |
T3859 |
amod |
first,residue |
R2270 |
T3861 |
T3859 |
compound |
proline,residue |
R2271 |
T3862 |
T3847 |
conj |
found,shared |
R2272 |
T3863 |
T3859 |
punct |
(,residue |
R2273 |
T3864 |
T3859 |
prep |
at,residue |
R2274 |
T3865 |
T3866 |
det |
the,primer |
R2275 |
T3866 |
T3867 |
poss |
primer,end |
R2276 |
T3867 |
T3864 |
pobj |
end,at |
R2277 |
T3868 |
T3866 |
case |
's,primer |
R2278 |
T3869 |
T3867 |
nummod |
3,end |
R2279 |
T3870 |
T3869 |
punct |
',3 |
R2280 |
T3871 |
T3862 |
punct |
),found |
R2281 |
T3872 |
T3862 |
auxpass |
is,found |
R2282 |
T3873 |
T3862 |
prep |
in,found |
R2283 |
T3874 |
T3875 |
quantmod |
121,124 |
R2284 |
T3875 |
T3878 |
nummod |
124,genes |
R2285 |
T3876 |
T3875 |
quantmod |
out,124 |
R2286 |
T3877 |
T3875 |
quantmod |
of,124 |
R2287 |
T3878 |
T3873 |
pobj |
genes,in |
R2288 |
T3879 |
T3880 |
punct |
(,% |
R2289 |
T3880 |
T3875 |
parataxis |
%,124 |
R2290 |
T3881 |
T3880 |
nummod |
98,% |
R2291 |
T3882 |
T3880 |
punct |
),% |
R2292 |
T3883 |
T3878 |
amod |
intact,genes |
R2293 |
T3884 |
T3878 |
nmod |
class,genes |
R2294 |
T3885 |
T3884 |
nummod |
I,class |
R2295 |
T3886 |
T3862 |
prep |
compared,found |
R2296 |
T3887 |
T3886 |
prep |
to,compared |
R2297 |
T3888 |
T3889 |
advmod |
only,983 |
R2298 |
T3889 |
T3893 |
nummod |
983,genes |
R2299 |
T3890 |
T3889 |
quantmod |
37,983 |
R2300 |
T3891 |
T3889 |
quantmod |
out,983 |
R2301 |
T3892 |
T3889 |
quantmod |
of,983 |
R2302 |
T3893 |
T3887 |
pobj |
genes,to |
R2303 |
T3894 |
T3895 |
punct |
(,% |
R2304 |
T3895 |
T3889 |
parataxis |
%,983 |
R2305 |
T3896 |
T3895 |
nummod |
4,% |
R2306 |
T3897 |
T3895 |
punct |
),% |
R2307 |
T3898 |
T3893 |
amod |
intact,genes |
R2308 |
T3899 |
T3893 |
nmod |
class,genes |
R2309 |
T3900 |
T3899 |
nummod |
II,class |
R2310 |
T3901 |
T3862 |
punct |
.,found |
R2311 |
T3903 |
T3904 |
advmod |
When,combined |
R2312 |
T3904 |
T3905 |
advcl |
combined,amplifies |
R2313 |
T3905 |
T3921 |
ccomp |
amplifies,represented |
R2314 |
T3906 |
T3904 |
prep |
with,combined |
R2315 |
T3907 |
T3908 |
det |
another,primer |
R2316 |
T3908 |
T3906 |
pobj |
primer,with |
R2317 |
T3909 |
T3910 |
amod |
olfactory,receptor |
R2318 |
T3910 |
T3908 |
nmod |
receptor,primer |
R2319 |
T3911 |
T3908 |
amod |
degenerate,primer |
R2320 |
T3912 |
T3908 |
punct |
", ",primer |
R2321 |
T3913 |
T3908 |
appos |
P26,primer |
R2322 |
T3914 |
T3915 |
punct |
[,17 |
R2323 |
T3915 |
T3904 |
parataxis |
17,combined |
R2324 |
T3916 |
T3915 |
punct |
],17 |
R2325 |
T3917 |
T3905 |
punct |
", ",amplifies |
R2326 |
T3918 |
T3919 |
det |
this,primer |
R2327 |
T3919 |
T3905 |
nsubj |
primer,amplifies |
R2328 |
T3920 |
T3905 |
advmod |
preferentially,amplifies |
R2329 |
T3922 |
T3923 |
nmod |
class,receptors |
R2330 |
T3923 |
T3905 |
dobj |
receptors,amplifies |
R2331 |
T3924 |
T3922 |
nummod |
I,class |
R2332 |
T3925 |
T3923 |
amod |
olfactory,receptors |
R2333 |
T3926 |
T3923 |
prep |
from,receptors |
R2334 |
T3927 |
T3928 |
nmod |
mouse,DNA |
R2335 |
T3928 |
T3926 |
pobj |
DNA,from |
R2336 |
T3929 |
T3928 |
amod |
genomic,DNA |
R2337 |
T3930 |
T3921 |
punct |
: ,represented |
R2338 |
T3931 |
T3921 |
prep |
of,represented |
R2339 |
T3932 |
T3933 |
nummod |
33,products |
R2340 |
T3933 |
T3931 |
pobj |
products,of |
R2341 |
T3934 |
T3933 |
amod |
sequenced,products |
R2342 |
T3935 |
T3933 |
punct |
", ",products |
R2343 |
T3936 |
T3933 |
amod |
cloned,products |
R2344 |
T3937 |
T3933 |
compound |
PCR,products |
R2345 |
T3938 |
T3921 |
punct |
", ",represented |
R2346 |
T3939 |
T3921 |
nsubj |
17,represented |
R2347 |
T3940 |
T3941 |
nummod |
seven,receptors |
R2348 |
T3941 |
T3921 |
dobj |
receptors,represented |
R2349 |
T3942 |
T3941 |
amod |
different,receptors |
R2350 |
T3943 |
T3941 |
nmod |
class,receptors |
R2351 |
T3944 |
T3943 |
nummod |
I,class |
R2352 |
T3945 |
T3941 |
amod |
olfactory,receptors |
R2353 |
T3946 |
T3921 |
punct |
", ",represented |
R2354 |
T3947 |
T3948 |
nsubj |
six,represented |
R2355 |
T3948 |
T3921 |
conj |
represented,represented |
R2356 |
T3949 |
T3950 |
nummod |
three,receptors |
R2357 |
T3950 |
T3948 |
dobj |
receptors,represented |
R2358 |
T3951 |
T3950 |
amod |
different,receptors |
R2359 |
T3952 |
T3950 |
nmod |
class,receptors |
R2360 |
T3953 |
T3952 |
nummod |
II,class |
R2361 |
T3954 |
T3950 |
amod |
olfactory,receptors |
R2362 |
T3955 |
T3948 |
punct |
", ",represented |
R2363 |
T3956 |
T3948 |
cc |
and,represented |
R2364 |
T3957 |
T3958 |
nsubj |
ten,represented |
R2365 |
T3958 |
T3948 |
conj |
represented,represented |
R2366 |
T3959 |
T3960 |
nummod |
five,contaminants |
R2367 |
T3960 |
T3958 |
dobj |
contaminants,represented |
R2368 |
T3961 |
T3960 |
amod |
different,contaminants |
R2369 |
T3962 |
T3963 |
amod |
non-olfactory,receptor |
R2370 |
T3963 |
T3960 |
compound |
receptor,contaminants |
R2371 |
T3964 |
T3921 |
punct |
.,represented |
R2372 |
T3966 |
T3967 |
amod |
Degenerate,PCR |
R2373 |
T3967 |
T3968 |
nsubj |
PCR,showed |
R2374 |
T3969 |
T3967 |
punct |
", ",PCR |
R2375 |
T3970 |
T3967 |
conj |
cloning,PCR |
R2376 |
T3971 |
T3970 |
punct |
", ",cloning |
R2377 |
T3972 |
T3970 |
cc |
and,cloning |
R2378 |
T3973 |
T3970 |
conj |
sequencing,cloning |
R2379 |
T3974 |
T3973 |
prep |
from,sequencing |
R2380 |
T3975 |
T3976 |
amod |
reverse,transcribed |
R2381 |
T3976 |
T3978 |
amod |
transcribed,RNA |
R2382 |
T3977 |
T3976 |
punct |
-,transcribed |
R2383 |
T3978 |
T3974 |
pobj |
RNA,from |
R2384 |
T3979 |
T3980 |
amod |
olfactory,epithelium |
R2385 |
T3980 |
T3978 |
compound |
epithelium,RNA |
R2386 |
T3981 |
T3982 |
mark |
that,expressed |
R2387 |
T3982 |
T3968 |
ccomp |
expressed,showed |
R2388 |
T3983 |
T3984 |
advmod |
at,seven |
R2389 |
T3984 |
T3986 |
nummod |
seven,receptors |
R2390 |
T3985 |
T3984 |
advmod |
least,seven |
R2391 |
T3986 |
T3982 |
nsubjpass |
receptors,expressed |
R2392 |
T3987 |
T3986 |
nmod |
class,receptors |
R2393 |
T3988 |
T3987 |
nummod |
I,class |
R2394 |
T3989 |
T3986 |
amod |
olfactory,receptors |
R2395 |
T3990 |
T3982 |
auxpass |
are,expressed |
R2396 |
T3991 |
T3982 |
punct |
", ",expressed |
R2397 |
T3992 |
T3993 |
advmod |
as,as |
R2398 |
T3993 |
T3995 |
cc |
as,gene |
R2399 |
T3994 |
T3993 |
advmod |
well,as |
R2400 |
T3995 |
T3982 |
dep |
gene,expressed |
R2401 |
T3996 |
T3995 |
nummod |
one,gene |
R2402 |
T3997 |
T3995 |
amod |
additional,gene |
R2403 |
T3998 |
T3995 |
nmod |
class,gene |
R2404 |
T3999 |
T3998 |
nummod |
II,class |
R2405 |
T4000 |
T3995 |
punct |
(,gene |
R2406 |
T4001 |
T3995 |
acl |
colored,gene |
R2407 |
T4002 |
T4001 |
oprd |
red,colored |
R2408 |
T4003 |
T4001 |
prep |
in,colored |
R2409 |
T4004 |
T4003 |
pobj |
Figure,in |
R2410 |
T4005 |
T4004 |
nummod |
1,Figure |
R2411 |
T4006 |
T3995 |
punct |
),gene |
R2412 |
T4007 |
T3968 |
punct |
.,showed |
R2413 |
T4009 |
T4010 |
advmod |
However,obtained |
R2414 |
T4011 |
T4010 |
punct |
", ",obtained |
R2415 |
T4012 |
T4013 |
det |
no,products |
R2416 |
T4013 |
T4010 |
nsubjpass |
products,obtained |
R2417 |
T4014 |
T4010 |
aux |
could,obtained |
R2418 |
T4015 |
T4010 |
auxpass |
be,obtained |
R2419 |
T4016 |
T4010 |
prep |
from,obtained |
R2420 |
T4017 |
T4018 |
det |
the,adult |
R2421 |
T4018 |
T4016 |
pobj |
adult,from |
R2422 |
T4019 |
T4018 |
cc |
or,adult |
R2423 |
T4020 |
T4021 |
det |
the,fetal |
R2424 |
T4021 |
T4022 |
nmod |
fetal,libraries |
R2425 |
T4022 |
T4018 |
conj |
libraries,adult |
R2426 |
T4023 |
T4024 |
amod |
olfactory,epithelium |
R2427 |
T4024 |
T4022 |
compound |
epithelium,libraries |
R2428 |
T4025 |
T4022 |
compound |
cDNA,libraries |
R2429 |
T4026 |
T4010 |
advcl |
using,obtained |
R2430 |
T4027 |
T4028 |
det |
the,primer |
R2431 |
T4028 |
T4026 |
dobj |
primer,using |
R2432 |
T4029 |
T4028 |
nmod |
class,primer |
R2433 |
T4030 |
T4029 |
nummod |
I,class |
R2434 |
T4031 |
T4010 |
punct |
", ",obtained |
R2435 |
T4032 |
T4010 |
advcl |
suggesting,obtained |
R2436 |
T4033 |
T4034 |
mark |
that,contain |
R2437 |
T4034 |
T4032 |
ccomp |
contain,suggesting |
R2438 |
T4035 |
T4036 |
det |
the,libraries |
R2439 |
T4036 |
T4034 |
nsubj |
libraries,contain |
R2440 |
T4037 |
T4038 |
advmod |
very,low |
R2441 |
T4038 |
T4039 |
amod |
low,levels |
R2442 |
T4039 |
T4034 |
dobj |
levels,contain |
R2443 |
T4040 |
T4039 |
prep |
of,levels |
R2444 |
T4041 |
T4042 |
nmod |
class,receptors |
R2445 |
T4042 |
T4040 |
pobj |
receptors,of |
R2446 |
T4043 |
T4041 |
nummod |
I,class |
R2447 |
T4044 |
T4042 |
amod |
olfactory,receptors |
R2448 |
T4045 |
T4010 |
punct |
.,obtained |
R2449 |
T4047 |
T4048 |
nsubj |
We,confirmed |
R2450 |
T4049 |
T4048 |
advmod |
also,confirmed |
R2451 |
T4050 |
T4048 |
dobj |
expression,confirmed |
R2452 |
T4051 |
T4050 |
prep |
of,expression |
R2453 |
T4052 |
T4053 |
nummod |
nine,receptors |
R2454 |
T4053 |
T4051 |
pobj |
receptors,of |
R2455 |
T4054 |
T4053 |
amod |
additional,receptors |
R2456 |
T4055 |
T4053 |
amod |
olfactory,receptors |
R2457 |
T4056 |
T4053 |
punct |
(,receptors |
R2458 |
T4057 |
T4058 |
nummod |
three,class |
R2459 |
T4058 |
T4053 |
appos |
class,receptors |
R2460 |
T4059 |
T4058 |
nummod |
I,class |
R2461 |
T4060 |
T4058 |
cc |
and,class |
R2462 |
T4061 |
T4062 |
nummod |
six,class |
R2463 |
T4062 |
T4058 |
conj |
class,class |
R2464 |
T4063 |
T4062 |
nummod |
II,class |
R2465 |
T4064 |
T4053 |
punct |
", ",receptors |
R2466 |
T4065 |
T4053 |
acl |
colored,receptors |
R2467 |
T4066 |
T4065 |
oprd |
red,colored |
R2468 |
T4067 |
T4065 |
prep |
in,colored |
R2469 |
T4068 |
T4067 |
pobj |
Figure,in |
R2470 |
T4069 |
T4068 |
nummod |
1,Figure |
R2471 |
T4070 |
T4053 |
punct |
),receptors |
R2472 |
T4071 |
T4048 |
prep |
from,confirmed |
R2473 |
T4072 |
T4071 |
pobj |
subclades,from |
R2474 |
T4073 |
T4074 |
dep |
that,represented |
R2475 |
T4074 |
T4072 |
relcl |
represented,subclades |
R2476 |
T4075 |
T4074 |
auxpass |
were,represented |
R2477 |
T4076 |
T4074 |
advmod |
poorly,represented |
R2478 |
T4077 |
T4074 |
prep |
in,represented |
R2479 |
T4078 |
T4079 |
poss |
our,screen |
R2480 |
T4079 |
T4077 |
pobj |
screen,in |
R2481 |
T4080 |
T4079 |
compound |
cDNA,screen |
R2482 |
T4081 |
T4048 |
advcl |
using,confirmed |
R2483 |
T4082 |
T4083 |
npadvmod |
gene,specific |
R2484 |
T4083 |
T4085 |
amod |
specific,pairs |
R2485 |
T4084 |
T4083 |
punct |
-,specific |
R2486 |
T4085 |
T4081 |
dobj |
pairs,using |
R2487 |
T4086 |
T4085 |
compound |
primer,pairs |
R2488 |
T4087 |
T4088 |
aux |
to,amplify |
R2489 |
T4088 |
T4081 |
advcl |
amplify,using |
R2490 |
T4089 |
T4090 |
compound |
cDNA,library |
R2491 |
T4090 |
T4088 |
dobj |
library,amplify |
R2492 |
T4091 |
T4090 |
cc |
or,library |
R2493 |
T4092 |
T4093 |
amod |
reverse,transcribed |
R2494 |
T4093 |
T4095 |
amod |
transcribed,templates |
R2495 |
T4094 |
T4093 |
punct |
-,transcribed |
R2496 |
T4095 |
T4090 |
conj |
templates,library |
R2497 |
T4096 |
T4095 |
compound |
RNA,templates |
R2498 |
T4097 |
T4048 |
punct |
.,confirmed |
R2499 |
T4099 |
T4100 |
prep |
For,determined |
R2500 |
T4101 |
T4099 |
pobj |
two,For |
R2501 |
T4102 |
T4101 |
prep |
of,two |
R2502 |
T4103 |
T4104 |
det |
the,genes |
R2503 |
T4104 |
T4102 |
pobj |
genes,of |
R2504 |
T4105 |
T4104 |
nmod |
class,genes |
R2505 |
T4106 |
T4105 |
nummod |
I,class |
R2506 |
T4107 |
T4108 |
nsubj |
we,shown |
R2507 |
T4108 |
T4104 |
advcl |
shown,genes |
R2508 |
T4109 |
T4108 |
aux |
had,shown |
R2509 |
T4110 |
T4111 |
aux |
to,expressed |
R2510 |
T4111 |
T4108 |
xcomp |
expressed,shown |
R2511 |
T4112 |
T4111 |
auxpass |
be,expressed |
R2512 |
T4113 |
T4100 |
punct |
", ",determined |
R2513 |
T4114 |
T4100 |
nsubj |
we,determined |
R2514 |
T4115 |
T4116 |
amod |
relative,levels |
R2515 |
T4116 |
T4100 |
dobj |
levels,determined |
R2516 |
T4117 |
T4116 |
compound |
transcript,levels |
R2517 |
T4118 |
T4100 |
advcl |
using,determined |
R2518 |
T4119 |
T4120 |
amod |
quantitative,PCR |
R2519 |
T4120 |
T4118 |
dobj |
PCR,using |
R2520 |
T4121 |
T4120 |
compound |
RT,PCR |
R2521 |
T4122 |
T4120 |
punct |
-,PCR |
R2522 |
T4123 |
T4124 |
punct |
(,see |
R2523 |
T4124 |
T4100 |
parataxis |
see,determined |
R2524 |
T4125 |
T4124 |
advmod |
below,see |
R2525 |
T4126 |
T4124 |
punct |
),see |
R2526 |
T4127 |
T4100 |
punct |
.,determined |
R2527 |
T4129 |
T4130 |
compound |
Expression,levels |
R2528 |
T4130 |
T4131 |
nsubj |
levels,were |
R2529 |
T4132 |
T4131 |
acomp |
similar,were |
R2530 |
T4133 |
T4132 |
prep |
to,similar |
R2531 |
T4134 |
T4133 |
pobj |
those,to |
R2532 |
T4135 |
T4134 |
acl |
observed,those |
R2533 |
T4136 |
T4135 |
prep |
for,observed |
R2534 |
T4137 |
T4136 |
pobj |
genes,for |
R2535 |
T4138 |
T4139 |
dep |
that,represented |
R2536 |
T4139 |
T4137 |
relcl |
represented,genes |
R2537 |
T4140 |
T4139 |
auxpass |
were,represented |
R2538 |
T4141 |
T4139 |
prep |
in,represented |
R2539 |
T4142 |
T4143 |
poss |
our,collection |
R2540 |
T4143 |
T4141 |
pobj |
collection,in |
R2541 |
T4144 |
T4143 |
compound |
cDNA,collection |
R2542 |
T4145 |
T4131 |
punct |
", ",were |
R2543 |
T4146 |
T4131 |
advcl |
suggesting,were |
R2544 |
T4147 |
T4148 |
mark |
that,represented |
R2545 |
T4148 |
T4146 |
advcl |
represented,suggesting |
R2546 |
T4149 |
T4150 |
nmod |
class,receptors |
R2547 |
T4150 |
T4148 |
nsubjpass |
receptors,represented |
R2548 |
T4151 |
T4149 |
nummod |
I,class |
R2549 |
T4152 |
T4150 |
amod |
olfactory,receptors |
R2550 |
T4153 |
T4148 |
auxpass |
are,represented |
R2551 |
T4154 |
T4148 |
neg |
not,represented |
R2552 |
T4155 |
T4148 |
advmod |
under,represented |
R2553 |
T4156 |
T4148 |
punct |
-,represented |
R2554 |
T4157 |
T4148 |
prep |
in,represented |
R2555 |
T4158 |
T4159 |
det |
the,epithelium |
R2556 |
T4159 |
T4157 |
pobj |
epithelium,in |
R2557 |
T4160 |
T4159 |
amod |
olfactory,epithelium |
R2558 |
T4161 |
T4148 |
punct |
", ",represented |
R2559 |
T4162 |
T4148 |
cc |
and,represented |
R2560 |
T4163 |
T4164 |
mark |
that,is |
R2561 |
T4164 |
T4148 |
conj |
is,represented |
R2562 |
T4165 |
T4166 |
det |
the,dearth |
R2563 |
T4166 |
T4164 |
nsubj |
dearth,is |
R2564 |
T4167 |
T4166 |
prep |
of,dearth |
R2565 |
T4168 |
T4169 |
nmod |
class,cDNAs |
R2566 |
T4169 |
T4167 |
pobj |
cDNAs,of |
R2567 |
T4170 |
T4168 |
nummod |
I,class |
R2568 |
T4171 |
T4166 |
prep |
in,dearth |
R2569 |
T4172 |
T4173 |
poss |
our,screen |
R2570 |
T4173 |
T4171 |
pobj |
screen,in |
R2571 |
T4174 |
T4164 |
acomp |
likely,is |
R2572 |
T4175 |
T4176 |
aux |
to,be |
R2573 |
T4176 |
T4174 |
xcomp |
be,likely |
R2574 |
T4177 |
T4176 |
prep |
due,be |
R2575 |
T4178 |
T4177 |
pcomp |
to,due |
R2576 |
T4179 |
T4177 |
pobj |
bias,due |
R2577 |
T4180 |
T4179 |
prep |
in,bias |
R2578 |
T4181 |
T4182 |
det |
the,libraries |
R2579 |
T4182 |
T4180 |
pobj |
libraries,in |
R2580 |
T4183 |
T4182 |
cc |
and,libraries |
R2581 |
T4184 |
T4183 |
punct |
/,and |
R2582 |
T4185 |
T4183 |
cc |
or,and |
R2583 |
T4186 |
T4187 |
compound |
hybridization,probes |
R2584 |
T4187 |
T4182 |
conj |
probes,libraries |
R2585 |
T4188 |
T4131 |
punct |
.,were |
R2588 |
T4620 |
T4621 |
det |
Some,genes |
R2589 |
T4621 |
T4624 |
nsubjpass |
genes,expressed |
R2590 |
T4622 |
T4623 |
amod |
olfactory,receptor |
R2591 |
T4623 |
T4621 |
compound |
receptor,genes |
R2592 |
T4625 |
T4624 |
auxpass |
are,expressed |
R2593 |
T4626 |
T4624 |
prep |
at,expressed |
R2594 |
T4627 |
T4628 |
amod |
higher,levels |
R2595 |
T4628 |
T4626 |
pobj |
levels,at |
R2596 |
T4629 |
T4628 |
prep |
than,levels |
R2597 |
T4630 |
T4629 |
pobj |
others,than |
R2598 |
T4632 |
T4633 |
poss |
Our,screen |
R2599 |
T4633 |
T4635 |
nsubj |
screen,suggests |
R2600 |
T4634 |
T4633 |
compound |
cDNA,screen |
R2601 |
T4636 |
T4637 |
mark |
that,expressed |
R2602 |
T4637 |
T4635 |
ccomp |
expressed,suggests |
R2603 |
T4638 |
T4639 |
det |
some,genes |
R2604 |
T4639 |
T4637 |
nsubjpass |
genes,expressed |
R2605 |
T4640 |
T4641 |
amod |
olfactory,receptor |
R2606 |
T4641 |
T4639 |
compound |
receptor,genes |
R2607 |
T4642 |
T4637 |
auxpass |
are,expressed |
R2608 |
T4643 |
T4637 |
prep |
at,expressed |
R2609 |
T4644 |
T4645 |
amod |
higher,levels |
R2610 |
T4645 |
T4643 |
pobj |
levels,at |
R2611 |
T4646 |
T4645 |
prep |
than,levels |
R2612 |
T4647 |
T4646 |
pobj |
others,than |
R2613 |
T4648 |
T4635 |
punct |
.,suggests |
R2614 |
T4650 |
T4651 |
mark |
If,expressed |
R2615 |
T4651 |
T4657 |
advcl |
expressed,follow |
R2616 |
T4652 |
T4653 |
det |
all,genes |
R2617 |
T4653 |
T4651 |
nsubjpass |
genes,expressed |
R2618 |
T4654 |
T4655 |
amod |
olfactory,receptor |
R2619 |
T4655 |
T4653 |
compound |
receptor,genes |
R2620 |
T4656 |
T4651 |
auxpass |
were,expressed |
R2621 |
T4658 |
T4651 |
prep |
at,expressed |
R2622 |
T4659 |
T4660 |
amod |
equal,levels |
R2623 |
T4660 |
T4658 |
pobj |
levels,at |
R2624 |
T4661 |
T4651 |
punct |
", ",expressed |
R2625 |
T4662 |
T4651 |
cc |
and,expressed |
R2626 |
T4663 |
T4664 |
poss |
our,screen |
R2627 |
T4664 |
T4665 |
nsubj |
screen,were |
R2628 |
T4665 |
T4651 |
conj |
were,expressed |
R2629 |
T4666 |
T4664 |
cc |
and,screen |
R2630 |
T4667 |
T4664 |
conj |
library,screen |
R2631 |
T4668 |
T4665 |
acomp |
unbiased,were |
R2632 |
T4669 |
T4665 |
prep |
in,were |
R2633 |
T4670 |
T4671 |
poss |
their,coverage |
R2634 |
T4671 |
T4669 |
pobj |
coverage,in |
R2635 |
T4672 |
T4671 |
prep |
of,coverage |
R2636 |
T4673 |
T4674 |
det |
the,receptors |
R2637 |
T4674 |
T4672 |
pobj |
receptors,of |
R2638 |
T4675 |
T4674 |
nmod |
class,receptors |
R2639 |
T4676 |
T4675 |
nummod |
II,class |
R2640 |
T4677 |
T4674 |
amod |
olfactory,receptors |
R2641 |
T4678 |
T4657 |
punct |
", ",follow |
R2642 |
T4679 |
T4680 |
det |
the,number |
R2643 |
T4680 |
T4657 |
nsubj |
number,follow |
R2644 |
T4681 |
T4680 |
prep |
of,number |
R2645 |
T4682 |
T4681 |
pobj |
cDNAs,of |
R2646 |
T4683 |
T4680 |
acl |
detected,number |
R2647 |
T4684 |
T4683 |
prep |
per,detected |
R2648 |
T4685 |
T4686 |
nmod |
class,receptor |
R2649 |
T4686 |
T4684 |
pobj |
receptor,per |
R2650 |
T4687 |
T4685 |
nummod |
II,class |
R2651 |
T4688 |
T4686 |
amod |
olfactory,receptor |
R2652 |
T4689 |
T4657 |
aux |
should,follow |
R2653 |
T4690 |
T4691 |
det |
a,distribution |
R2654 |
T4691 |
T4657 |
dobj |
distribution,follow |
R2655 |
T4692 |
T4691 |
compound |
Poisson,distribution |
R2656 |
T4693 |
T4691 |
punct |
", ",distribution |
R2657 |
T4694 |
T4691 |
acl |
calculated,distribution |
R2658 |
T4695 |
T4694 |
prep |
based,calculated |
R2659 |
T4696 |
T4695 |
prep |
on,based |
R2660 |
T4697 |
T4698 |
det |
the,assumption |
R2661 |
T4698 |
T4696 |
pobj |
assumption,on |
R2662 |
T4699 |
T4700 |
mark |
that,have |
R2663 |
T4700 |
T4698 |
advcl |
have,assumption |
R2664 |
T4701 |
T4702 |
det |
all,receptors |
R2665 |
T4702 |
T4700 |
nsubj |
receptors,have |
R2666 |
T4703 |
T4702 |
nummod |
983,receptors |
R2667 |
T4704 |
T4702 |
amod |
intact,receptors |
R2668 |
T4705 |
T4702 |
nmod |
class,receptors |
R2669 |
T4706 |
T4705 |
nummod |
II,class |
R2670 |
T4707 |
T4702 |
amod |
olfactory,receptors |
R2671 |
T4708 |
T4709 |
det |
an,chance |
R2672 |
T4709 |
T4700 |
dobj |
chance,have |
R2673 |
T4710 |
T4709 |
amod |
equal,chance |
R2674 |
T4711 |
T4709 |
prep |
of,chance |
R2675 |
T4712 |
T4713 |
auxpass |
being,represented |
R2676 |
T4713 |
T4711 |
pcomp |
represented,of |
R2677 |
T4714 |
T4713 |
prep |
in,represented |
R2678 |
T4715 |
T4716 |
det |
the,screen |
R2679 |
T4716 |
T4714 |
pobj |
screen,in |
R2680 |
T4717 |
T4700 |
punct |
", ",have |
R2681 |
T4718 |
T4700 |
cc |
but,have |
R2682 |
T4719 |
T4720 |
mark |
that,found |
R2683 |
T4720 |
T4700 |
conj |
found,have |
R2684 |
T4721 |
T4722 |
nmod |
class,receptors |
R2685 |
T4722 |
T4720 |
nsubjpass |
receptors,found |
R2686 |
T4723 |
T4721 |
nummod |
I,class |
R2687 |
T4724 |
T4722 |
amod |
olfactory,receptors |
R2688 |
T4725 |
T4722 |
cc |
and,receptors |
R2689 |
T4726 |
T4722 |
conj |
pseudogenes,receptors |
R2690 |
T4727 |
T4720 |
aux |
can,found |
R2691 |
T4728 |
T4720 |
neg |
not,found |
R2692 |
T4729 |
T4720 |
auxpass |
be,found |
R2693 |
T4730 |
T4731 |
punct |
(,Figure |
R2694 |
T4731 |
T4720 |
parataxis |
Figure,found |
R2695 |
T4732 |
T4731 |
nummod |
2,Figure |
R2696 |
T4733 |
T4731 |
punct |
),Figure |
R2697 |
T4734 |
T4657 |
punct |
.,follow |
R2698 |
T4736 |
T4737 |
nsubj |
We,calculate |
R2699 |
T4738 |
T4739 |
det |
a,probability |
R2700 |
T4739 |
T4737 |
dobj |
probability,calculate |
R2701 |
T4740 |
T4739 |
amod |
low,probability |
R2702 |
T4741 |
T4742 |
punct |
(,one |
R2703 |
T4742 |
T4739 |
parataxis |
one,probability |
R2704 |
T4743 |
T4742 |
advmod |
approximately,one |
R2705 |
T4744 |
T4742 |
prep |
in,one |
R2706 |
T4745 |
T4744 |
pobj |
28,in |
R2707 |
T4746 |
T4742 |
punct |
),one |
R2708 |
T4747 |
T4748 |
mark |
that,observe |
R2709 |
T4748 |
T4739 |
acl |
observe,probability |
R2710 |
T4749 |
T4748 |
nsubj |
we,observe |
R2711 |
T4750 |
T4748 |
aux |
would,observe |
R2712 |
T4751 |
T4752 |
det |
any,gene |
R2713 |
T4752 |
T4748 |
dobj |
gene,observe |
R2714 |
T4753 |
T4752 |
prep |
with,gene |
R2715 |
T4754 |
T4755 |
advmod |
at,eight |
R2716 |
T4755 |
T4757 |
nummod |
eight,cDNAs |
R2717 |
T4756 |
T4755 |
advmod |
least,eight |
R2718 |
T4757 |
T4753 |
pobj |
cDNAs,with |
R2719 |
T4758 |
T4757 |
amod |
matching,cDNAs |
R2720 |
T4759 |
T4748 |
prep |
in,observe |
R2721 |
T4760 |
T4761 |
det |
the,set |
R2722 |
T4761 |
T4759 |
pobj |
set,in |
R2723 |
T4762 |
T4761 |
prep |
of,set |
R2724 |
T4763 |
T4764 |
nummod |
"1,176",cDNAs |
R2725 |
T4764 |
T4762 |
pobj |
cDNAs,of |
R2726 |
T4765 |
T4766 |
nsubj |
we,assigned |
R2727 |
T4766 |
T4764 |
advcl |
assigned,cDNAs |
R2728 |
T4767 |
T4766 |
prep |
to,assigned |
R2729 |
T4768 |
T4769 |
amod |
single,sequences |
R2730 |
T4769 |
T4767 |
pobj |
sequences,to |
R2731 |
T4770 |
T4771 |
amod |
olfactory,receptor |
R2732 |
T4771 |
T4769 |
compound |
receptor,sequences |
R2733 |
T4772 |
T4737 |
punct |
.,calculate |
R2734 |
T4774 |
T4775 |
advmod |
However,found |
R2735 |
T4776 |
T4775 |
punct |
", ",found |
R2736 |
T4777 |
T4775 |
prep |
for,found |
R2737 |
T4778 |
T4779 |
nummod |
17,receptors |
R2738 |
T4779 |
T4777 |
pobj |
receptors,for |
R2739 |
T4780 |
T4779 |
amod |
olfactory,receptors |
R2740 |
T4781 |
T4775 |
punct |
", ",found |
R2741 |
T4782 |
T4775 |
nsubj |
we,found |
R2742 |
T4783 |
T4784 |
nummod |
ten,cDNAs |
R2743 |
T4784 |
T4775 |
dobj |
cDNAs,found |
R2744 |
T4785 |
T4783 |
cc |
or,ten |
R2745 |
T4786 |
T4783 |
conj |
more,ten |
R2746 |
T4787 |
T4784 |
compound |
matching,cDNAs |
R2747 |
T4788 |
T4775 |
punct |
", ",found |
R2748 |
T4789 |
T4775 |
advcl |
suggesting,found |
R2749 |
T4790 |
T4791 |
mark |
that,expressed |
R2750 |
T4791 |
T4789 |
ccomp |
expressed,suggesting |
R2751 |
T4792 |
T4791 |
nsubjpass |
they,expressed |
R2752 |
T4793 |
T4791 |
aux |
might,expressed |
R2753 |
T4794 |
T4791 |
auxpass |
be,expressed |
R2754 |
T4795 |
T4791 |
prep |
at,expressed |
R2755 |
T4796 |
T4797 |
amod |
higher,levels |
R2756 |
T4797 |
T4795 |
pobj |
levels,at |
R2757 |
T4798 |
T4797 |
prep |
than,levels |
R2758 |
T4799 |
T4800 |
amod |
other,genes |
R2759 |
T4800 |
T4798 |
pobj |
genes,than |
R2760 |
T4801 |
T4802 |
amod |
olfactory,receptor |
R2761 |
T4802 |
T4800 |
compound |
receptor,genes |
R2762 |
T4803 |
T4804 |
punct |
(,Figure |
R2763 |
T4804 |
T4789 |
parataxis |
Figure,suggesting |
R2764 |
T4805 |
T4804 |
nummod |
2,Figure |
R2765 |
T4806 |
T4804 |
punct |
),Figure |
R2766 |
T4807 |
T4775 |
punct |
.,found |
R2767 |
T4809 |
T4810 |
det |
The,genes |
R2768 |
T4810 |
T4812 |
nsubj |
genes,are |
R2769 |
T4811 |
T4810 |
nummod |
two,genes |
R2770 |
T4813 |
T4814 |
prep |
for,found |
R2771 |
T4814 |
T4810 |
relcl |
found,genes |
R2772 |
T4815 |
T4813 |
pobj |
which,for |
R2773 |
T4816 |
T4814 |
nsubj |
we,found |
R2774 |
T4817 |
T4818 |
amod |
most,cDNAs |
R2775 |
T4818 |
T4814 |
dobj |
cDNAs,found |
R2776 |
T4819 |
T4810 |
punct |
(,genes |
R2777 |
T4820 |
T4821 |
compound |
AY318726,MOR28 |
R2778 |
T4821 |
T4810 |
appos |
MOR28,genes |
R2779 |
T4822 |
T4821 |
punct |
/,MOR28 |
R2780 |
T4823 |
T4821 |
cc |
and,MOR28 |
R2781 |
T4824 |
T4825 |
compound |
AY318727,MOR10 |
R2782 |
T4825 |
T4821 |
conj |
MOR10,MOR28 |
R2783 |
T4826 |
T4825 |
punct |
/,MOR10 |
R2784 |
T4827 |
T4810 |
punct |
),genes |
R2785 |
T4828 |
T4829 |
advmod |
genomically,adjacent |
R2786 |
T4829 |
T4812 |
acomp |
adjacent,are |
R2787 |
T4830 |
T4829 |
cc |
and,adjacent |
R2788 |
T4831 |
T4829 |
conj |
in,adjacent |
R2789 |
T4832 |
T4833 |
det |
the,cluster |
R2790 |
T4833 |
T4831 |
pobj |
cluster,in |
R2791 |
T4834 |
T4835 |
advmod |
well,studied |
R2792 |
T4835 |
T4833 |
amod |
studied,cluster |
R2793 |
T4836 |
T4835 |
punct |
-,studied |
R2794 |
T4837 |
T4838 |
amod |
olfactory,receptor |
R2795 |
T4838 |
T4833 |
compound |
receptor,cluster |
R2796 |
T4839 |
T4840 |
amod |
next,to |
R2797 |
T4840 |
T4833 |
prep |
to,cluster |
R2798 |
T4841 |
T4842 |
det |
the,locus |
R2799 |
T4842 |
T4840 |
pobj |
locus,to |
R2800 |
T4843 |
T4844 |
compound |
T,cell |
R2801 |
T4844 |
T4842 |
compound |
cell,locus |
R2802 |
T4845 |
T4844 |
punct |
-,cell |
R2803 |
T4846 |
T4842 |
compound |
receptor,locus |
R2804 |
T4847 |
T4848 |
compound |
α,δ |
R2805 |
T4848 |
T4842 |
compound |
δ,locus |
R2806 |
T4849 |
T4848 |
punct |
/,δ |
R2807 |
T4850 |
T4851 |
punct |
[,31 |
R2808 |
T4851 |
T4812 |
parataxis |
31,are |
R2809 |
T4852 |
T4851 |
nummod |
18,31 |
R2810 |
T4853 |
T4851 |
punct |
",",31 |
R2811 |
T4854 |
T4851 |
punct |
],31 |
R2812 |
T4855 |
T4812 |
punct |
.,are |
R2813 |
T4857 |
T4858 |
amod |
Quantitative,PCR |
R2814 |
T4858 |
T4861 |
nsubj |
PCR,confirms |
R2815 |
T4859 |
T4858 |
compound |
RT,PCR |
R2816 |
T4860 |
T4858 |
punct |
-,PCR |
R2817 |
T4862 |
T4858 |
prep |
of,PCR |
R2818 |
T4863 |
T4864 |
nummod |
six,receptors |
R2819 |
T4864 |
T4862 |
pobj |
receptors,of |
R2820 |
T4865 |
T4864 |
amod |
olfactory,receptors |
R2821 |
T4866 |
T4867 |
mark |
that,vary |
R2822 |
T4867 |
T4861 |
ccomp |
vary,confirms |
R2823 |
T4868 |
T4869 |
compound |
expression,levels |
R2824 |
T4869 |
T4867 |
nsubj |
levels,vary |
R2825 |
T4870 |
T4867 |
aux |
do,vary |
R2826 |
T4871 |
T4867 |
advmod |
indeed,vary |
R2827 |
T4872 |
T4867 |
advmod |
considerably,vary |
R2828 |
T4873 |
T4867 |
prep |
between,vary |
R2829 |
T4874 |
T4873 |
pobj |
genes,between |
R2830 |
T4875 |
T4861 |
punct |
.,confirms |
R2831 |
T4877 |
T4878 |
nsubj |
We,used |
R2832 |
T4879 |
T4880 |
amod |
quantitative,PCR |
R2833 |
T4880 |
T4878 |
dobj |
PCR,used |
R2834 |
T4881 |
T4880 |
punct |
(,PCR |
R2835 |
T4882 |
T4883 |
amod |
real,time |
R2836 |
T4883 |
T4880 |
nmod |
time,PCR |
R2837 |
T4884 |
T4883 |
punct |
-,time |
R2838 |
T4885 |
T4880 |
punct |
),PCR |
R2839 |
T4886 |
T4887 |
aux |
to,measure |
R2840 |
T4887 |
T4878 |
advcl |
measure,used |
R2841 |
T4888 |
T4889 |
amod |
olfactory,epithelium |
R2842 |
T4889 |
T4890 |
compound |
epithelium,levels |
R2843 |
T4890 |
T4887 |
dobj |
levels,measure |
R2844 |
T4891 |
T4890 |
compound |
transcript,levels |
R2845 |
T4892 |
T4890 |
prep |
of,levels |
R2846 |
T4893 |
T4894 |
nummod |
six,genes |
R2847 |
T4894 |
T4892 |
pobj |
genes,of |
R2848 |
T4895 |
T4896 |
amod |
olfactory,receptor |
R2849 |
T4896 |
T4894 |
compound |
receptor,genes |
R2850 |
T4897 |
T4894 |
cc |
and,genes |
R2851 |
T4898 |
T4899 |
det |
the,gene |
R2852 |
T4899 |
T4894 |
conj |
gene,genes |
R2853 |
T4900 |
T4899 |
amod |
ribosomal,gene |
R2854 |
T4901 |
T4899 |
compound |
S16,gene |
R2855 |
T4902 |
T4887 |
prep |
in,measure |
R2856 |
T4903 |
T4904 |
nummod |
three,mice |
R2857 |
T4904 |
T4902 |
pobj |
mice,in |
R2858 |
T4905 |
T4904 |
prep |
of,mice |
R2859 |
T4906 |
T4907 |
det |
the,strain |
R2860 |
T4907 |
T4905 |
pobj |
strain,of |
R2861 |
T4908 |
T4907 |
amod |
same,strain |
R2862 |
T4909 |
T4907 |
amod |
inbred,strain |
R2863 |
T4910 |
T4911 |
punct |
(,Figure |
R2864 |
T4911 |
T4887 |
parataxis |
Figure,measure |
R2865 |
T4912 |
T4911 |
nummod |
3,Figure |
R2866 |
T4913 |
T4911 |
punct |
),Figure |
R2867 |
T4914 |
T4878 |
punct |
.,used |
R2868 |
T4916 |
T4917 |
det |
These,genes |
R2869 |
T4917 |
T4918 |
nsubj |
genes,include |
R2870 |
T4919 |
T4920 |
nummod |
two,receptors |
R2871 |
T4920 |
T4918 |
dobj |
receptors,include |
R2872 |
T4921 |
T4920 |
amod |
olfactory,receptors |
R2873 |
T4922 |
T4920 |
prep |
with,receptors |
R2874 |
T4923 |
T4924 |
amod |
more,20 |
R2875 |
T4924 |
T4926 |
nummod |
20,cDNAs |
R2876 |
T4925 |
T4924 |
quantmod |
than,20 |
R2877 |
T4926 |
T4922 |
pobj |
cDNAs,with |
R2878 |
T4927 |
T4926 |
amod |
matching,cDNAs |
R2879 |
T4928 |
T4920 |
punct |
", ",receptors |
R2880 |
T4929 |
T4920 |
conj |
two,receptors |
R2881 |
T4930 |
T4929 |
prep |
with,two |
R2882 |
T4931 |
T4932 |
nummod |
one,cDNAs |
R2883 |
T4932 |
T4930 |
pobj |
cDNAs,with |
R2884 |
T4933 |
T4931 |
cc |
or,one |
R2885 |
T4934 |
T4931 |
conj |
two,one |
R2886 |
T4935 |
T4932 |
amod |
matching,cDNAs |
R2887 |
T4936 |
T4929 |
cc |
and,two |
R2888 |
T4937 |
T4938 |
nummod |
two,receptors |
R2889 |
T4938 |
T4929 |
conj |
receptors,two |
R2890 |
T4939 |
T4938 |
nmod |
class,receptors |
R2891 |
T4940 |
T4939 |
nummod |
I,class |
R2892 |
T4941 |
T4938 |
amod |
olfactory,receptors |
R2893 |
T4942 |
T4938 |
prep |
with,receptors |
R2894 |
T4943 |
T4944 |
det |
no,cDNAs |
R2895 |
T4944 |
T4942 |
pobj |
cDNAs,with |
R2896 |
T4945 |
T4944 |
amod |
matching,cDNAs |
R2897 |
T4946 |
T4918 |
punct |
.,include |
R2898 |
T4948 |
T4949 |
prep |
In,measure |
R2899 |
T4950 |
T4951 |
det |
these,assays |
R2900 |
T4951 |
T4948 |
pobj |
assays,In |
R2901 |
T4952 |
T4949 |
punct |
", ",measure |
R2902 |
T4953 |
T4949 |
nsubj |
we,measure |
R2903 |
T4954 |
T4955 |
compound |
transcript,level |
R2904 |
T4955 |
T4949 |
dobj |
level,measure |
R2905 |
T4956 |
T4955 |
prep |
per,level |
R2906 |
T4957 |
T4958 |
amod |
genomic,copy |
R2907 |
T4958 |
T4956 |
pobj |
copy,per |
R2908 |
T4959 |
T4958 |
prep |
of,copy |
R2909 |
T4960 |
T4961 |
det |
the,gene |
R2910 |
T4961 |
T4959 |
pobj |
gene,of |
R2911 |
T4962 |
T4949 |
prep |
by,measure |
R2912 |
T4963 |
T4962 |
pcomp |
comparing,by |
R2913 |
T4964 |
T4965 |
advmod |
how,well |
R2914 |
T4965 |
T4966 |
advmod |
well,amplifies |
R2915 |
T4966 |
T4963 |
ccomp |
amplifies,comparing |
R2916 |
T4967 |
T4968 |
det |
a,pair |
R2917 |
T4968 |
T4966 |
nsubj |
pair,amplifies |
R2918 |
T4969 |
T4970 |
npadvmod |
gene,specific |
R2919 |
T4970 |
T4968 |
amod |
specific,pair |
R2920 |
T4971 |
T4970 |
punct |
-,specific |
R2921 |
T4972 |
T4968 |
compound |
primer,pair |
R2922 |
T4973 |
T4974 |
amod |
reverse,transcribed |
R2923 |
T4974 |
T4976 |
amod |
transcribed,RNA |
R2924 |
T4975 |
T4974 |
punct |
-,transcribed |
R2925 |
T4976 |
T4966 |
dobj |
RNA,amplifies |
R2926 |
T4977 |
T4963 |
punct |
", ",comparing |
R2927 |
T4978 |
T4963 |
advcl |
relative,comparing |
R2928 |
T4979 |
T4978 |
prep |
to,relative |
R2929 |
T4980 |
T4981 |
det |
a,curve |
R2930 |
T4981 |
T4979 |
pobj |
curve,to |
R2931 |
T4982 |
T4981 |
amod |
standard,curve |
R2932 |
T4983 |
T4981 |
prep |
of,curve |
R2933 |
T4984 |
T4983 |
pobj |
amplification,of |
R2934 |
T4985 |
T4984 |
prep |
of,amplification |
R2935 |
T4986 |
T4987 |
nmod |
mouse,DNA |
R2936 |
T4987 |
T4985 |
pobj |
DNA,of |
R2937 |
T4988 |
T4987 |
amod |
genomic,DNA |
R2938 |
T4989 |
T4949 |
punct |
.,measure |
R2939 |
T4991 |
T4992 |
nsubj |
We,find |
R2940 |
T4993 |
T4994 |
mark |
that,vary |
R2941 |
T4994 |
T4992 |
ccomp |
vary,find |
R2942 |
T4995 |
T4996 |
compound |
expression,levels |
R2943 |
T4996 |
T4994 |
nsubj |
levels,vary |
R2944 |
T4997 |
T4994 |
aux |
can,vary |
R2945 |
T4998 |
T4994 |
prep |
by,vary |
R2946 |
T4999 |
T5000 |
advmod |
almost,300-fold |
R2947 |
T5000 |
T4998 |
pcomp |
300-fold,by |
R2948 |
T5001 |
T4994 |
prep |
between,vary |
R2949 |
T5002 |
T5001 |
pobj |
genes,between |
R2950 |
T5003 |
T5004 |
punct |
(,Figure |
R2951 |
T5004 |
T5002 |
parataxis |
Figure,genes |
R2952 |
T5005 |
T5004 |
prep |
for,Figure |
R2953 |
T5006 |
T5005 |
pobj |
example,for |
R2954 |
T5007 |
T5004 |
punct |
", ",Figure |
R2955 |
T5008 |
T5009 |
compound |
genes,A |
R2956 |
T5009 |
T5004 |
dep |
A,Figure |
R2957 |
T5010 |
T5009 |
cc |
and,A |
R2958 |
T5011 |
T5009 |
conj |
D,A |
R2959 |
T5012 |
T5004 |
punct |
", ",Figure |
R2960 |
T5013 |
T5004 |
nummod |
3,Figure |
R2961 |
T5014 |
T5004 |
punct |
),Figure |
R2962 |
T5015 |
T4992 |
punct |
.,find |
R2963 |
T5017 |
T5018 |
advmod |
However,are |
R2964 |
T5019 |
T5018 |
punct |
", ",are |
R2965 |
T5020 |
T5021 |
compound |
cDNA,numbers |
R2966 |
T5021 |
T5018 |
nsubj |
numbers,are |
R2967 |
T5022 |
T5018 |
neg |
not,are |
R2968 |
T5023 |
T5024 |
det |
a,indicator |
R2969 |
T5024 |
T5018 |
attr |
indicator,are |
R2970 |
T5025 |
T5024 |
amod |
good,indicator |
R2971 |
T5026 |
T5024 |
prep |
of,indicator |
R2972 |
T5027 |
T5028 |
compound |
expression,level |
R2973 |
T5028 |
T5026 |
pobj |
level,of |
R2974 |
T5029 |
T5018 |
punct |
", ",are |
R2975 |
T5030 |
T5031 |
det |
a,discrepancy |
R2976 |
T5031 |
T5018 |
npadvmod |
discrepancy,are |
R2977 |
T5032 |
T5033 |
dep |
that,is |
R2978 |
T5033 |
T5031 |
relcl |
is,discrepancy |
R2979 |
T5034 |
T5033 |
acomp |
likely,is |
R2980 |
T5035 |
T5036 |
aux |
to,be |
R2981 |
T5036 |
T5034 |
xcomp |
be,likely |
R2982 |
T5037 |
T5036 |
prep |
due,be |
R2983 |
T5038 |
T5037 |
pcomp |
to,due |
R2984 |
T5039 |
T5037 |
pobj |
bias,due |
R2985 |
T5040 |
T5039 |
prep |
in,bias |
R2986 |
T5041 |
T5042 |
det |
the,screen |
R2987 |
T5042 |
T5040 |
pobj |
screen,in |
R2988 |
T5043 |
T5044 |
punct |
(,used |
R2989 |
T5044 |
T5042 |
parataxis |
used,screen |
R2990 |
T5045 |
T5044 |
nsubj |
we,used |
R2991 |
T5046 |
T5047 |
amod |
degenerate,primers |
R2992 |
T5047 |
T5044 |
dobj |
primers,used |
R2993 |
T5048 |
T5049 |
aux |
to,make |
R2994 |
T5049 |
T5044 |
advcl |
make,used |
R2995 |
T5050 |
T5051 |
det |
the,probes |
R2996 |
T5051 |
T5049 |
dobj |
probes,make |
R2997 |
T5052 |
T5044 |
punct |
", ",used |
R2998 |
T5053 |
T5054 |
dep |
which,favor |
R2999 |
T5054 |
T5044 |
ccomp |
favor,used |
R3000 |
T5055 |
T5054 |
aux |
will,favor |
R3001 |
T5056 |
T5057 |
det |
some,genes |
R3002 |
T5057 |
T5054 |
dobj |
genes,favor |
R3003 |
T5058 |
T5054 |
prep |
over,favor |
R3004 |
T5059 |
T5058 |
pobj |
others,over |
R3005 |
T5060 |
T5044 |
punct |
),used |
R3006 |
T5061 |
T5040 |
cc |
and,in |
R3007 |
T5062 |
T5040 |
conj |
in,in |
R3008 |
T5063 |
T5064 |
det |
the,libraries |
R3009 |
T5064 |
T5062 |
pobj |
libraries,in |
R3010 |
T5065 |
T5066 |
punct |
(,favor |
R3011 |
T5066 |
T5064 |
parataxis |
favor,libraries |
R3012 |
T5067 |
T5068 |
compound |
oligo,dT |
R3013 |
T5068 |
T5070 |
compound |
dT,priming |
R3014 |
T5069 |
T5068 |
punct |
-,dT |
R3015 |
T5070 |
T5066 |
nsubj |
priming,favor |
R3016 |
T5071 |
T5066 |
aux |
will,favor |
R3017 |
T5072 |
T5066 |
dobj |
genes,favor |
R3018 |
T5073 |
T5072 |
prep |
with,genes |
R3019 |
T5074 |
T5075 |
amod |
shorter,UTRs |
R3020 |
T5075 |
T5073 |
pobj |
UTRs,with |
R3021 |
T5076 |
T5075 |
nummod |
3,UTRs |
R3022 |
T5077 |
T5076 |
punct |
',3 |
R3023 |
T5078 |
T5066 |
punct |
),favor |
R3024 |
T5079 |
T5018 |
punct |
.,are |
R3025 |
T5081 |
T5082 |
prep |
For,observe |
R3026 |
T5083 |
T5081 |
pobj |
example,For |
R3027 |
T5084 |
T5082 |
punct |
", ",observe |
R3028 |
T5085 |
T5082 |
nsubj |
we,observe |
R3029 |
T5086 |
T5087 |
amod |
large,differences |
R3030 |
T5087 |
T5082 |
dobj |
differences,observe |
R3031 |
T5088 |
T5087 |
compound |
expression,differences |
R3032 |
T5089 |
T5087 |
prep |
in,differences |
R3033 |
T5090 |
T5091 |
predet |
all,mice |
R3034 |
T5091 |
T5089 |
pobj |
mice,in |
R3035 |
T5092 |
T5091 |
nummod |
three,mice |
R3036 |
T5093 |
T5087 |
prep |
between,differences |
R3037 |
T5094 |
T5095 |
nummod |
two,genes |
R3038 |
T5095 |
T5093 |
pobj |
genes,between |
R3039 |
T5096 |
T5097 |
prep |
for,found |
R3040 |
T5097 |
T5095 |
relcl |
found,genes |
R3041 |
T5098 |
T5096 |
pobj |
which,for |
R3042 |
T5099 |
T5100 |
amod |
similar,numbers |
R3043 |
T5100 |
T5097 |
nsubjpass |
numbers,found |
R3044 |
T5101 |
T5100 |
prep |
of,numbers |
R3045 |
T5102 |
T5101 |
pobj |
cDNAs,of |
R3046 |
T5103 |
T5097 |
auxpass |
were,found |
R3047 |
T5104 |
T5095 |
punct |
(,genes |
R3048 |
T5105 |
T5106 |
compound |
genes,A |
R3049 |
T5106 |
T5095 |
appos |
A,genes |
R3050 |
T5107 |
T5106 |
cc |
and,A |
R3051 |
T5108 |
T5106 |
conj |
B,A |
R3052 |
T5109 |
T5110 |
punct |
", ",Figure |
R3053 |
T5110 |
T5095 |
parataxis |
Figure,genes |
R3054 |
T5111 |
T5110 |
nummod |
3,Figure |
R3055 |
T5112 |
T5110 |
punct |
),Figure |
R3056 |
T5113 |
T5087 |
punct |
", ",differences |
R3057 |
T5114 |
T5087 |
cc |
and,differences |
R3058 |
T5115 |
T5116 |
advmod |
conversely,levels |
R3059 |
T5116 |
T5087 |
conj |
levels,differences |
R3060 |
T5117 |
T5116 |
punct |
", ",levels |
R3061 |
T5118 |
T5116 |
amod |
similar,levels |
R3062 |
T5119 |
T5116 |
compound |
expression,levels |
R3063 |
T5120 |
T5116 |
prep |
between,levels |
R3064 |
T5121 |
T5122 |
nummod |
two,genes |
R3065 |
T5122 |
T5120 |
pobj |
genes,between |
R3066 |
T5123 |
T5122 |
prep |
with,genes |
R3067 |
T5124 |
T5125 |
det |
a,difference |
R3068 |
T5125 |
T5123 |
pobj |
difference,with |
R3069 |
T5126 |
T5125 |
amod |
ten-fold,difference |
R3070 |
T5127 |
T5125 |
prep |
in,difference |
R3071 |
T5128 |
T5127 |
pobj |
number,in |
R3072 |
T5129 |
T5128 |
prep |
of,number |
R3073 |
T5130 |
T5129 |
pobj |
cDNAs,of |
R3074 |
T5131 |
T5128 |
acl |
found,number |
R3075 |
T5132 |
T5122 |
punct |
(,genes |
R3076 |
T5133 |
T5134 |
compound |
genes,B |
R3077 |
T5134 |
T5122 |
appos |
B,genes |
R3078 |
T5135 |
T5134 |
cc |
and,B |
R3079 |
T5136 |
T5134 |
conj |
C,B |
R3080 |
T5137 |
T5138 |
punct |
", ",Figure |
R3081 |
T5138 |
T5122 |
parataxis |
Figure,genes |
R3082 |
T5139 |
T5138 |
nummod |
3,Figure |
R3083 |
T5140 |
T5138 |
punct |
),Figure |
R3084 |
T5141 |
T5082 |
punct |
.,observe |
R3085 |
T5143 |
T5144 |
compound |
Expression,levels |
R3086 |
T5144 |
T5145 |
nsubj |
levels,are |
R3087 |
T5145 |
T5146 |
ccomp |
are,find |
R3088 |
T5147 |
T5148 |
advmod |
mostly,consistent |
R3089 |
T5148 |
T5145 |
acomp |
consistent,are |
R3090 |
T5149 |
T5145 |
prep |
between,are |
R3091 |
T5150 |
T5151 |
amod |
different,mice |
R3092 |
T5151 |
T5149 |
pobj |
mice,between |
R3093 |
T5152 |
T5146 |
punct |
: ,find |
R3094 |
T5153 |
T5146 |
nsubj |
we,find |
R3095 |
T5154 |
T5155 |
amod |
similar,differences |
R3096 |
T5155 |
T5146 |
dobj |
differences,find |
R3097 |
T5156 |
T5157 |
compound |
expression,level |
R3098 |
T5157 |
T5155 |
compound |
level,differences |
R3099 |
T5158 |
T5157 |
punct |
-,level |
R3100 |
T5159 |
T5155 |
prep |
between,differences |
R3101 |
T5160 |
T5161 |
amod |
olfactory,receptor |
R3102 |
T5161 |
T5162 |
compound |
receptor,genes |
R3103 |
T5162 |
T5159 |
pobj |
genes,between |
R3104 |
T5163 |
T5146 |
prep |
in,find |
R3105 |
T5164 |
T5165 |
det |
all,mice |
R3106 |
T5165 |
T5163 |
pobj |
mice,in |
R3107 |
T5166 |
T5165 |
nummod |
three,mice |
R3108 |
T5167 |
T5165 |
acl |
examined,mice |
R3109 |
T5168 |
T5169 |
punct |
(,is |
R3110 |
T5169 |
T5146 |
parataxis |
is,find |
R3111 |
T5170 |
T5171 |
advmod |
that,is |
R3112 |
T5171 |
T5169 |
advmod |
is,is |
R3113 |
T5172 |
T5169 |
punct |
", ",is |
R3114 |
T5173 |
T5174 |
det |
the,order |
R3115 |
T5174 |
T5169 |
nsubj |
order,is |
R3116 |
T5175 |
T5174 |
compound |
rank,order |
R3117 |
T5176 |
T5174 |
prep |
of,order |
R3118 |
T5177 |
T5178 |
det |
the,genes |
R3119 |
T5178 |
T5176 |
pobj |
genes,of |
R3120 |
T5179 |
T5178 |
nummod |
six,genes |
R3121 |
T5180 |
T5169 |
acomp |
similar,is |
R3122 |
T5181 |
T5169 |
prep |
among,is |
R3123 |
T5182 |
T5183 |
det |
the,mice |
R3124 |
T5183 |
T5181 |
pobj |
mice,among |
R3125 |
T5184 |
T5183 |
nummod |
three,mice |
R3126 |
T5185 |
T5169 |
punct |
),is |
R3127 |
T5186 |
T5146 |
punct |
", ",find |
R3128 |
T5187 |
T5188 |
mark |
although,is |
R3129 |
T5188 |
T5146 |
advcl |
is,find |
R3130 |
T5189 |
T5188 |
expl |
there,is |
R3131 |
T5190 |
T5188 |
attr |
variation,is |
R3132 |
T5191 |
T5190 |
prep |
in,variation |
R3133 |
T5192 |
T5193 |
compound |
expression,level |
R3134 |
T5193 |
T5191 |
pobj |
level,in |
R3135 |
T5194 |
T5193 |
prep |
of,level |
R3136 |
T5195 |
T5196 |
det |
some,genes |
R3137 |
T5196 |
T5194 |
pobj |
genes,of |
R3138 |
T5197 |
T5188 |
prep |
between,is |
R3139 |
T5198 |
T5197 |
pobj |
mice,between |
R3140 |
T5199 |
T5200 |
punct |
(,Figure |
R3141 |
T5200 |
T5188 |
parataxis |
Figure,is |
R3142 |
T5201 |
T5200 |
prep |
for,Figure |
R3143 |
T5202 |
T5201 |
pobj |
example,for |
R3144 |
T5203 |
T5200 |
punct |
", ",Figure |
R3145 |
T5204 |
T5205 |
compound |
gene,E |
R3146 |
T5205 |
T5200 |
dep |
E,Figure |
R3147 |
T5206 |
T5200 |
punct |
", ",Figure |
R3148 |
T5207 |
T5200 |
nummod |
3,Figure |
R3149 |
T5208 |
T5200 |
punct |
),Figure |
R3150 |
T5209 |
T5146 |
punct |
.,find |
R3151 |
T5211 |
T5212 |
advmod |
In,situ |
R3152 |
T5212 |
T5213 |
amod |
situ,hybridization |
R3153 |
T5213 |
T5214 |
nsubj |
hybridization,shows |
R3154 |
T5215 |
T5216 |
punct |
(,Figure |
R3155 |
T5216 |
T5213 |
parataxis |
Figure,hybridization |
R3156 |
T5217 |
T5216 |
nummod |
4,Figure |
R3157 |
T5218 |
T5216 |
punct |
),Figure |
R3158 |
T5219 |
T5220 |
mark |
that,account |
R3159 |
T5220 |
T5214 |
ccomp |
account,shows |
R3160 |
T5221 |
T5222 |
amod |
increased,numbers |
R3161 |
T5222 |
T5220 |
nsubj |
numbers,account |
R3162 |
T5223 |
T5222 |
prep |
of,numbers |
R3163 |
T5224 |
T5225 |
amod |
expressing,cells |
R3164 |
T5225 |
T5223 |
pobj |
cells,of |
R3165 |
T5226 |
T5220 |
prep |
for,account |
R3166 |
T5227 |
T5226 |
pobj |
some,for |
R3167 |
T5228 |
T5227 |
punct |
", ",some |
R3168 |
T5229 |
T5227 |
cc |
but,some |
R3169 |
T5230 |
T5229 |
neg |
not,but |
R3170 |
T5231 |
T5227 |
conj |
all,some |
R3171 |
T5232 |
T5227 |
punct |
", ",some |
R3172 |
T5233 |
T5227 |
prep |
of,some |
R3173 |
T5234 |
T5235 |
det |
the,difference |
R3174 |
T5235 |
T5233 |
pobj |
difference,of |
R3175 |
T5236 |
T5235 |
prep |
in,difference |
R3176 |
T5237 |
T5238 |
compound |
transcript,levels |
R3177 |
T5238 |
T5236 |
pobj |
levels,in |
R3178 |
T5239 |
T5235 |
prep |
between,difference |
R3179 |
T5240 |
T5239 |
pobj |
two,between |
R3180 |
T5241 |
T5240 |
prep |
of,two |
R3181 |
T5242 |
T5243 |
det |
the,genes |
R3182 |
T5243 |
T5241 |
pobj |
genes,of |
R3183 |
T5244 |
T5243 |
acl |
tested,genes |
R3184 |
T5245 |
T5244 |
prep |
by,tested |
R3185 |
T5246 |
T5247 |
amod |
real,time |
R3186 |
T5247 |
T5249 |
compound |
time,PCR |
R3187 |
T5248 |
T5247 |
punct |
-,time |
R3188 |
T5249 |
T5245 |
pobj |
PCR,by |
R3189 |
T5250 |
T5240 |
punct |
(,two |
R3190 |
T5251 |
T5252 |
compound |
genes,A |
R3191 |
T5252 |
T5240 |
appos |
A,two |
R3192 |
T5253 |
T5252 |
cc |
and,A |
R3193 |
T5254 |
T5252 |
conj |
D,A |
R3194 |
T5255 |
T5252 |
prep |
in,A |
R3195 |
T5256 |
T5255 |
pobj |
Figure,in |
R3196 |
T5257 |
T5256 |
nummod |
3,Figure |
R3197 |
T5258 |
T5220 |
punct |
),account |
R3198 |
T5259 |
T5214 |
punct |
.,shows |
R3199 |
T5261 |
T5262 |
nsubj |
We,hybridized |
R3200 |
T5263 |
T5264 |
amod |
alternate,sections |
R3201 |
T5264 |
T5262 |
dobj |
sections,hybridized |
R3202 |
T5265 |
T5264 |
amod |
coronal,sections |
R3203 |
T5266 |
T5264 |
amod |
serial,sections |
R3204 |
T5267 |
T5264 |
acl |
spanning,sections |
R3205 |
T5268 |
T5269 |
det |
an,epithelium |
R3206 |
T5269 |
T5267 |
dobj |
epithelium,spanning |
R3207 |
T5270 |
T5269 |
amod |
entire,epithelium |
R3208 |
T5271 |
T5269 |
amod |
olfactory,epithelium |
R3209 |
T5272 |
T5269 |
prep |
of,epithelium |
R3210 |
T5273 |
T5274 |
det |
a,mouse |
R3211 |
T5274 |
T5272 |
pobj |
mouse,of |
R3212 |
T5275 |
T5274 |
amod |
young,mouse |
R3213 |
T5276 |
T5277 |
punct |
(,P6 |
R3214 |
T5277 |
T5274 |
parataxis |
P6,mouse |
R3215 |
T5278 |
T5277 |
punct |
),P6 |
R3216 |
T5279 |
T5262 |
prep |
with,hybridized |
R3217 |
T5280 |
T5279 |
pobj |
probes,with |
R3218 |
T5281 |
T5280 |
prep |
for,probes |
R3219 |
T5282 |
T5283 |
compound |
gene,A |
R3220 |
T5283 |
T5281 |
pobj |
A,for |
R3221 |
T5284 |
T5283 |
cc |
and,A |
R3222 |
T5285 |
T5286 |
compound |
gene,D |
R3223 |
T5286 |
T5283 |
conj |
D,A |
R3224 |
T5287 |
T5262 |
punct |
.,hybridized |
R3225 |
T5289 |
T5290 |
nmod |
Southern,blot |
R3226 |
T5290 |
T5291 |
nmod |
blot,analyses |
R3227 |
T5291 |
T5294 |
nsubj |
analyses,show |
R3228 |
T5292 |
T5290 |
cc |
and,blot |
R3229 |
T5293 |
T5290 |
conj |
BLAST,blot |
R3230 |
T5295 |
T5296 |
mark |
that,are |
R3231 |
T5296 |
T5294 |
ccomp |
are,show |
R3232 |
T5297 |
T5298 |
det |
both,probes |
R3233 |
T5298 |
T5296 |
nsubj |
probes,are |
R3234 |
T5299 |
T5296 |
acomp |
likely,are |
R3235 |
T5300 |
T5301 |
aux |
to,hybridize |
R3236 |
T5301 |
T5299 |
xcomp |
hybridize,likely |
R3237 |
T5302 |
T5301 |
prep |
to,hybridize |
R3238 |
T5303 |
T5304 |
poss |
their,genes |
R3239 |
T5304 |
T5302 |
pobj |
genes,to |
R3240 |
T5305 |
T5304 |
amod |
intended,genes |
R3241 |
T5306 |
T5304 |
compound |
target,genes |
R3242 |
T5307 |
T5304 |
cc |
and,genes |
R3243 |
T5308 |
T5309 |
det |
no,others |
R3244 |
T5309 |
T5304 |
conj |
others,genes |
R3245 |
T5310 |
T5311 |
punct |
(,shown |
R3246 |
T5311 |
T5296 |
parataxis |
shown,are |
R3247 |
T5312 |
T5311 |
neg |
not,shown |
R3248 |
T5313 |
T5311 |
punct |
),shown |
R3249 |
T5314 |
T5294 |
punct |
.,show |
R3250 |
T5316 |
T5317 |
compound |
Gene,A |
R3251 |
T5317 |
T5318 |
nsubjpass |
A,expressed |
R3252 |
T5319 |
T5318 |
auxpass |
is,expressed |
R3253 |
T5320 |
T5318 |
prep |
in,expressed |
R3254 |
T5321 |
T5320 |
pobj |
zone,in |
R3255 |
T5322 |
T5321 |
nummod |
4,zone |
R3256 |
T5323 |
T5321 |
prep |
of,zone |
R3257 |
T5324 |
T5325 |
det |
the,epithelium |
R3258 |
T5325 |
T5323 |
pobj |
epithelium,of |
R3259 |
T5326 |
T5318 |
prep |
according,expressed |
R3260 |
T5327 |
T5326 |
prep |
to,according |
R3261 |
T5328 |
T5329 |
det |
the,nomenclature |
R3262 |
T5329 |
T5327 |
pobj |
nomenclature,to |
R3263 |
T5330 |
T5329 |
prep |
of,nomenclature |
R3264 |
T5331 |
T5330 |
pobj |
Sullivan,of |
R3265 |
T5332 |
T5333 |
advmod |
et,al. |
R3266 |
T5333 |
T5331 |
advmod |
al.,Sullivan |
R3267 |
T5334 |
T5335 |
punct |
[,32 |
R3268 |
T5335 |
T5329 |
parataxis |
32,nomenclature |
R3269 |
T5336 |
T5335 |
punct |
],32 |
R3270 |
T5337 |
T5338 |
punct |
(,Figure |
R3271 |
T5338 |
T5318 |
parataxis |
Figure,expressed |
R3272 |
T5339 |
T5338 |
nummod |
4a,Figure |
R3273 |
T5340 |
T5338 |
punct |
),Figure |
R3274 |
T5341 |
T5318 |
punct |
.,expressed |
R3275 |
T5343 |
T5344 |
det |
The,pattern |
R3276 |
T5344 |
T5346 |
nsubj |
pattern,correspond |
R3277 |
T5345 |
T5344 |
compound |
expression,pattern |
R3278 |
T5346 |
T5352 |
ccomp |
correspond,found |
R3279 |
T5347 |
T5344 |
prep |
of,pattern |
R3280 |
T5348 |
T5349 |
compound |
gene,D |
R3281 |
T5349 |
T5347 |
pobj |
D,of |
R3282 |
T5350 |
T5346 |
aux |
does,correspond |
R3283 |
T5351 |
T5346 |
neg |
not,correspond |
R3284 |
T5353 |
T5346 |
prep |
to,correspond |
R3285 |
T5354 |
T5353 |
pobj |
any,to |
R3286 |
T5355 |
T5354 |
prep |
of,any |
R3287 |
T5356 |
T5357 |
det |
the,zones |
R3288 |
T5357 |
T5355 |
pobj |
zones,of |
R3289 |
T5358 |
T5357 |
nummod |
four,zones |
R3290 |
T5359 |
T5357 |
punct |
',zones |
R3291 |
T5360 |
T5357 |
amod |
classical,zones |
R3292 |
T5361 |
T5357 |
punct |
',zones |
R3293 |
T5362 |
T5357 |
amod |
olfactory,zones |
R3294 |
T5363 |
T5357 |
amod |
epithelial,zones |
R3295 |
T5364 |
T5365 |
punct |
[,32 |
R3296 |
T5365 |
T5346 |
parataxis |
32,correspond |
R3297 |
T5366 |
T5365 |
nummod |
14,32 |
R3298 |
T5367 |
T5365 |
punct |
",",32 |
R3299 |
T5368 |
T5365 |
nummod |
15,32 |
R3300 |
T5369 |
T5365 |
punct |
",",32 |
R3301 |
T5370 |
T5365 |
punct |
],32 |
R3302 |
T5371 |
T5352 |
punct |
: ,found |
R3303 |
T5372 |
T5373 |
amod |
positive,cells |
R3304 |
T5373 |
T5352 |
nsubjpass |
cells,found |
R3305 |
T5374 |
T5352 |
auxpass |
are,found |
R3306 |
T5375 |
T5352 |
prep |
in,found |
R3307 |
T5376 |
T5375 |
pobj |
regions,in |
R3308 |
T5377 |
T5376 |
prep |
of,regions |
R3309 |
T5378 |
T5379 |
nmod |
endoturbinates,II |
R3310 |
T5379 |
T5377 |
pobj |
II,of |
R3311 |
T5380 |
T5379 |
cc |
and,II |
R3312 |
T5381 |
T5379 |
conj |
III,II |
R3313 |
T5382 |
T5379 |
cc |
and,II |
R3314 |
T5383 |
T5379 |
conj |
ectoturbinate,II |
R3315 |
T5384 |
T5383 |
nummod |
3,ectoturbinate |
R3316 |
T5385 |
T5352 |
punct |
", ",found |
R3317 |
T5386 |
T5352 |
advcl |
resembling,found |
R3318 |
T5387 |
T5388 |
det |
the,pattern |
R3319 |
T5388 |
T5386 |
dobj |
pattern,resembling |
R3320 |
T5389 |
T5388 |
compound |
expression,pattern |
R3321 |
T5390 |
T5388 |
acl |
seen,pattern |
R3322 |
T5391 |
T5390 |
advmod |
previously,seen |
R3323 |
T5392 |
T5390 |
prep |
for,seen |
R3324 |
T5393 |
T5394 |
det |
the,subfamily |
R3325 |
T5394 |
T5392 |
pobj |
subfamily,for |
R3326 |
T5395 |
T5394 |
compound |
OR37,subfamily |
R3327 |
T5396 |
T5394 |
cc |
and,subfamily |
R3328 |
T5397 |
T5398 |
nmod |
ORZ6,receptors |
R3329 |
T5398 |
T5394 |
conj |
receptors,subfamily |
R3330 |
T5399 |
T5398 |
amod |
olfactory,receptors |
R3331 |
T5400 |
T5401 |
punct |
[,34 |
R3332 |
T5401 |
T5352 |
parataxis |
34,found |
R3333 |
T5402 |
T5401 |
nummod |
33,34 |
R3334 |
T5403 |
T5401 |
punct |
",",34 |
R3335 |
T5404 |
T5401 |
punct |
],34 |
R3336 |
T5405 |
T5406 |
punct |
(,Figure |
R3337 |
T5406 |
T5352 |
parataxis |
Figure,found |
R3338 |
T5407 |
T5406 |
nummod |
4b,Figure |
R3339 |
T5408 |
T5406 |
punct |
),Figure |
R3340 |
T5409 |
T5352 |
punct |
.,found |
R3341 |
T5411 |
T5412 |
advcl |
Counting,find |
R3342 |
T5413 |
T5414 |
det |
the,number |
R3343 |
T5414 |
T5411 |
dobj |
number,Counting |
R3344 |
T5415 |
T5414 |
amod |
total,number |
R3345 |
T5416 |
T5414 |
prep |
of,number |
R3346 |
T5417 |
T5418 |
amod |
positive,cells |
R3347 |
T5418 |
T5416 |
pobj |
cells,of |
R3348 |
T5419 |
T5411 |
prep |
in,Counting |
R3349 |
T5420 |
T5421 |
amod |
alternate,sections |
R3350 |
T5421 |
T5419 |
pobj |
sections,in |
R3351 |
T5422 |
T5421 |
prep |
across,sections |
R3352 |
T5423 |
T5424 |
det |
the,epithelium |
R3353 |
T5424 |
T5422 |
pobj |
epithelium,across |
R3354 |
T5425 |
T5424 |
amod |
entire,epithelium |
R3355 |
T5426 |
T5412 |
punct |
", ",find |
R3356 |
T5427 |
T5412 |
nsubj |
we,find |
R3357 |
T5428 |
T5429 |
mark |
that,expressed |
R3358 |
T5429 |
T5412 |
ccomp |
expressed,find |
R3359 |
T5430 |
T5431 |
compound |
gene,A |
R3360 |
T5431 |
T5429 |
nsubjpass |
A,expressed |
R3361 |
T5432 |
T5429 |
auxpass |
is,expressed |
R3362 |
T5433 |
T5429 |
prep |
in,expressed |
R3363 |
T5434 |
T5435 |
nummod |
"2,905",cells |
R3364 |
T5435 |
T5433 |
pobj |
cells,in |
R3365 |
T5436 |
T5429 |
punct |
", ",expressed |
R3366 |
T5437 |
T5438 |
advmod |
about,12 |
R3367 |
T5438 |
T5439 |
nummod |
12,cells |
R3368 |
T5439 |
T5429 |
npadvmod |
cells,expressed |
R3369 |
T5440 |
T5438 |
quantmod |
times,12 |
R3370 |
T5441 |
T5439 |
amod |
more,cells |
R3371 |
T5442 |
T5439 |
prep |
than,cells |
R3372 |
T5443 |
T5444 |
compound |
gene,D |
R3373 |
T5444 |
T5442 |
pobj |
D,than |
R3374 |
T5445 |
T5444 |
punct |
", ",D |
R3375 |
T5446 |
T5447 |
dep |
which,expressed |
R3376 |
T5447 |
T5444 |
relcl |
expressed,D |
R3377 |
T5448 |
T5447 |
auxpass |
is,expressed |
R3378 |
T5449 |
T5447 |
prep |
in,expressed |
R3379 |
T5450 |
T5451 |
det |
a,total |
R3380 |
T5451 |
T5449 |
pobj |
total,in |
R3381 |
T5452 |
T5451 |
prep |
of,total |
R3382 |
T5453 |
T5454 |
nummod |
249,cells |
R3383 |
T5454 |
T5452 |
pobj |
cells,of |
R3384 |
T5455 |
T5412 |
punct |
.,find |
R3385 |
T5457 |
T5458 |
det |
This,difference |
R3386 |
T5458 |
T5460 |
nsubj |
difference,account |
R3387 |
T5459 |
T5458 |
amod |
12-fold,difference |
R3388 |
T5461 |
T5458 |
prep |
in,difference |
R3389 |
T5462 |
T5461 |
pobj |
numbers,in |
R3390 |
T5463 |
T5462 |
prep |
of,numbers |
R3391 |
T5464 |
T5465 |
amod |
expressing,cells |
R3392 |
T5465 |
T5463 |
pobj |
cells,of |
R3393 |
T5466 |
T5460 |
aux |
does,account |
R3394 |
T5467 |
T5460 |
neg |
not,account |
R3395 |
T5468 |
T5460 |
prep |
for,account |
R3396 |
T5469 |
T5470 |
det |
the,difference |
R3397 |
T5470 |
T5468 |
pobj |
difference,for |
R3398 |
T5471 |
T5472 |
advmod |
almost,300-fold |
R3399 |
T5472 |
T5470 |
nummod |
300-fold,difference |
R3400 |
T5473 |
T5470 |
prep |
in,difference |
R3401 |
T5474 |
T5475 |
compound |
RNA,levels |
R3402 |
T5475 |
T5473 |
pobj |
levels,in |
R3403 |
T5476 |
T5470 |
acl |
observed,difference |
R3404 |
T5477 |
T5476 |
prep |
by,observed |
R3405 |
T5478 |
T5479 |
amod |
real,time |
R3406 |
T5479 |
T5481 |
compound |
time,PCR |
R3407 |
T5480 |
T5479 |
punct |
-,time |
R3408 |
T5481 |
T5477 |
pobj |
PCR,by |
R3409 |
T5482 |
T5460 |
punct |
", ",account |
R3410 |
T5483 |
T5460 |
advcl |
implying,account |
R3411 |
T5484 |
T5485 |
mark |
that,is |
R3412 |
T5485 |
T5483 |
ccomp |
is,implying |
R3413 |
T5486 |
T5487 |
det |
the,level |
R3414 |
T5487 |
T5485 |
nsubj |
level,is |
R3415 |
T5488 |
T5487 |
compound |
transcript,level |
R3416 |
T5489 |
T5487 |
prep |
per,level |
R3417 |
T5490 |
T5491 |
amod |
expressing,cell |
R3418 |
T5491 |
T5489 |
pobj |
cell,per |
R3419 |
T5492 |
T5487 |
prep |
for,level |
R3420 |
T5493 |
T5494 |
compound |
gene,A |
R3421 |
T5494 |
T5492 |
pobj |
A,for |
R3422 |
T5495 |
T5496 |
quantmod |
about,25 |
R3423 |
T5496 |
T5497 |
npadvmod |
25,higher |
R3424 |
T5497 |
T5485 |
acomp |
higher,is |
R3425 |
T5498 |
T5496 |
quantmod |
times,25 |
R3426 |
T5499 |
T5497 |
prep |
than,higher |
R3427 |
T5500 |
T5501 |
compound |
transcript,level |
R3428 |
T5501 |
T5499 |
pobj |
level,than |
R3429 |
T5502 |
T5485 |
prep |
in,is |
R3430 |
T5503 |
T5504 |
det |
each,cell |
R3431 |
T5504 |
T5502 |
pobj |
cell,in |
R3432 |
T5505 |
T5504 |
amod |
expressing,cell |
R3433 |
T5506 |
T5485 |
prep |
for,is |
R3434 |
T5507 |
T5508 |
compound |
gene,D |
R3435 |
T5508 |
T5506 |
pobj |
D,for |
R3436 |
T5509 |
T5460 |
punct |
.,account |
R3437 |
T5511 |
T5512 |
nsubj |
We,note |
R3438 |
T5513 |
T5514 |
mark |
that,appear |
R3439 |
T5514 |
T5512 |
ccomp |
appear,note |
R3440 |
T5515 |
T5516 |
compound |
hybridization,intensities |
R3441 |
T5516 |
T5514 |
nsubj |
intensities,appear |
R3442 |
T5517 |
T5516 |
prep |
per,intensities |
R3443 |
T5518 |
T5519 |
amod |
positive,neuron |
R3444 |
T5519 |
T5517 |
pobj |
neuron,per |
R3445 |
T5520 |
T5514 |
oprd |
stronger,appear |
R3446 |
T5521 |
T5520 |
prep |
for,stronger |
R3447 |
T5522 |
T5523 |
compound |
gene,A |
R3448 |
T5523 |
T5521 |
pobj |
A,for |
R3449 |
T5524 |
T5520 |
prep |
than,stronger |
R3450 |
T5525 |
T5526 |
compound |
gene,D |
R3451 |
T5526 |
T5524 |
pobj |
D,than |
R3452 |
T5527 |
T5514 |
prep |
after,appear |
R3453 |
T5528 |
T5529 |
amod |
comparable,times |
R3454 |
T5529 |
T5527 |
pobj |
times,after |
R3455 |
T5530 |
T5529 |
compound |
exposure,times |
R3456 |
T5531 |
T5514 |
punct |
", ",appear |
R3457 |
T5532 |
T5514 |
prep |
in,appear |
R3458 |
T5533 |
T5532 |
pobj |
accordance,in |
R3459 |
T5534 |
T5533 |
prep |
with,accordance |
R3460 |
T5535 |
T5536 |
det |
the,idea |
R3461 |
T5536 |
T5534 |
pobj |
idea,with |
R3462 |
T5537 |
T5538 |
mark |
that,are |
R3463 |
T5538 |
T5536 |
acl |
are,idea |
R3464 |
T5539 |
T5540 |
compound |
transcript,levels |
R3465 |
T5540 |
T5538 |
nsubj |
levels,are |
R3466 |
T5541 |
T5538 |
acomp |
higher,are |
R3467 |
T5542 |
T5538 |
prep |
per,are |
R3468 |
T5543 |
T5542 |
pobj |
cell,per |
R3469 |
T5544 |
T5512 |
punct |
.,note |
R3470 |
T5546 |
T5547 |
advmod |
Thus,suggest |
R3471 |
T5548 |
T5547 |
punct |
", ",suggest |
R3472 |
T5549 |
T5547 |
nsubj |
we,suggest |
R3473 |
T5550 |
T5551 |
mark |
that,account |
R3474 |
T5551 |
T5547 |
ccomp |
account,suggest |
R3475 |
T5552 |
T5551 |
nsubj |
expression,account |
R3476 |
T5553 |
T5552 |
prep |
in,expression |
R3477 |
T5554 |
T5555 |
amod |
more,cells |
R3478 |
T5555 |
T5553 |
pobj |
cells,in |
R3479 |
T5556 |
T5553 |
cc |
and,in |
R3480 |
T5557 |
T5553 |
conj |
in,in |
R3481 |
T5558 |
T5559 |
amod |
higher,levels |
R3482 |
T5559 |
T5557 |
pobj |
levels,in |
R3483 |
T5560 |
T5559 |
prep |
per,levels |
R3484 |
T5561 |
T5560 |
pobj |
cell,per |
R3485 |
T5562 |
T5551 |
advmod |
together,account |
R3486 |
T5563 |
T5551 |
prep |
for,account |
R3487 |
T5564 |
T5565 |
det |
the,levels |
R3488 |
T5565 |
T5563 |
pobj |
levels,for |
R3489 |
T5566 |
T5567 |
advmod |
almost,300-fold |
R3490 |
T5567 |
T5568 |
amod |
300-fold,higher |
R3491 |
T5568 |
T5565 |
amod |
higher,levels |
R3492 |
T5569 |
T5570 |
amod |
olfactory,RNA |
R3493 |
T5570 |
T5565 |
compound |
RNA,levels |
R3494 |
T5571 |
T5570 |
amod |
epithelial,RNA |
R3495 |
T5572 |
T5565 |
prep |
of,levels |
R3496 |
T5573 |
T5574 |
compound |
gene,A |
R3497 |
T5574 |
T5572 |
pobj |
A,of |
R3498 |
T5575 |
T5565 |
amod |
relative,levels |
R3499 |
T5576 |
T5575 |
prep |
to,relative |
R3500 |
T5577 |
T5578 |
compound |
gene,D |
R3501 |
T5578 |
T5576 |
pobj |
D,to |
R3502 |
T5579 |
T5580 |
punct |
(,Figure |
R3503 |
T5580 |
T5551 |
parataxis |
Figure,account |
R3504 |
T5581 |
T5580 |
nummod |
3,Figure |
R3505 |
T5582 |
T5580 |
punct |
),Figure |
R3506 |
T5583 |
T5547 |
punct |
.,suggest |
R3508 |
T5714 |
T5715 |
advmod |
Most,genes |
R3509 |
T5715 |
T5718 |
nsubj |
genes,have |
R3510 |
T5716 |
T5717 |
amod |
olfactory,receptor |
R3511 |
T5717 |
T5715 |
compound |
receptor,genes |
R3512 |
T5719 |
T5720 |
amod |
several,isoforms |
R3513 |
T5720 |
T5718 |
dobj |
isoforms,have |
R3514 |
T5721 |
T5720 |
amod |
transcriptional,isoforms |
R3515 |
T5723 |
T5724 |
poss |
Our,collection |
R3516 |
T5724 |
T5726 |
nsubj |
collection,reveals |
R3517 |
T5725 |
T5724 |
compound |
cDNA,collection |
R3518 |
T5727 |
T5728 |
mark |
that,show |
R3519 |
T5728 |
T5726 |
ccomp |
show,reveals |
R3520 |
T5729 |
T5730 |
advmod |
at,two |
R3521 |
T5730 |
T5728 |
nsubj |
two,show |
R3522 |
T5731 |
T5730 |
advmod |
least,two |
R3523 |
T5732 |
T5730 |
quantmod |
thirds,two |
R3524 |
T5733 |
T5730 |
prep |
of,two |
R3525 |
T5734 |
T5735 |
det |
the,receptors |
R3526 |
T5735 |
T5733 |
pobj |
receptors,of |
R3527 |
T5736 |
T5735 |
amod |
olfactory,receptors |
R3528 |
T5737 |
T5735 |
acl |
sampled,receptors |
R3529 |
T5738 |
T5739 |
amod |
alternative,splicing |
R3530 |
T5739 |
T5728 |
dobj |
splicing,show |
R3531 |
T5740 |
T5739 |
prep |
of,splicing |
R3532 |
T5741 |
T5742 |
poss |
their,exons |
R3533 |
T5742 |
T5740 |
pobj |
exons,of |
R3534 |
T5743 |
T5742 |
nummod |
5,exons |
R3535 |
T5744 |
T5743 |
punct |
',5 |
R3536 |
T5745 |
T5742 |
amod |
untranslated,exons |
R3537 |
T5746 |
T5726 |
punct |
.,reveals |
R3538 |
T5748 |
T5749 |
advcl |
Using,find |
R3539 |
T5750 |
T5751 |
det |
a,script |
R3540 |
T5751 |
T5748 |
dobj |
script,Using |
R3541 |
T5752 |
T5751 |
compound |
custom,script |
R3542 |
T5753 |
T5754 |
aux |
to,process |
R3543 |
T5754 |
T5748 |
advcl |
process,Using |
R3544 |
T5755 |
T5756 |
compound |
sim4,alignments |
R3545 |
T5756 |
T5754 |
dobj |
alignments,process |
R3546 |
T5757 |
T5756 |
prep |
of,alignments |
R3547 |
T5758 |
T5759 |
nmod |
cDNA,sequences |
R3548 |
T5759 |
T5757 |
pobj |
sequences,of |
R3549 |
T5760 |
T5758 |
cc |
and,cDNA |
R3550 |
T5761 |
T5758 |
conj |
genomic,cDNA |
R3551 |
T5762 |
T5749 |
punct |
", ",find |
R3552 |
T5763 |
T5749 |
nsubj |
we,find |
R3553 |
T5764 |
T5765 |
quantmod |
two,eight |
R3554 |
T5765 |
T5767 |
nummod |
eight,forms |
R3555 |
T5766 |
T5765 |
quantmod |
to,eight |
R3556 |
T5767 |
T5749 |
dobj |
forms,find |
R3557 |
T5768 |
T5767 |
amod |
different,forms |
R3558 |
T5769 |
T5767 |
compound |
splice,forms |
R3559 |
T5770 |
T5749 |
prep |
for,find |
R3560 |
T5771 |
T5770 |
pobj |
85,for |
R3561 |
T5772 |
T5771 |
punct |
(,85 |
R3562 |
T5773 |
T5774 |
nummod |
45,% |
R3563 |
T5774 |
T5771 |
appos |
%,85 |
R3564 |
T5775 |
T5771 |
punct |
),85 |
R3565 |
T5776 |
T5771 |
prep |
of,85 |
R3566 |
T5777 |
T5778 |
det |
the,genes |
R3567 |
T5778 |
T5776 |
pobj |
genes,of |
R3568 |
T5779 |
T5778 |
nummod |
191,genes |
R3569 |
T5780 |
T5781 |
prep |
for,had |
R3570 |
T5781 |
T5778 |
relcl |
had,genes |
R3571 |
T5782 |
T5780 |
pobj |
which,for |
R3572 |
T5783 |
T5781 |
nsubj |
we,had |
R3573 |
T5784 |
T5781 |
aux |
have,had |
R3574 |
T5785 |
T5786 |
det |
some,opportunity |
R3575 |
T5786 |
T5781 |
dobj |
opportunity,had |
R3576 |
T5787 |
T5788 |
aux |
to,observe |
R3577 |
T5788 |
T5786 |
acl |
observe,opportunity |
R3578 |
T5789 |
T5790 |
amod |
alternate,splicing |
R3579 |
T5790 |
T5788 |
dobj |
splicing,observe |
R3580 |
T5791 |
T5792 |
punct |
(,minimum |
R3581 |
T5792 |
T5749 |
parataxis |
minimum,find |
R3582 |
T5793 |
T5794 |
advmod |
that,is |
R3583 |
T5794 |
T5792 |
advmod |
is,minimum |
R3584 |
T5795 |
T5792 |
punct |
", ",minimum |
R3585 |
T5796 |
T5792 |
det |
a,minimum |
R3586 |
T5797 |
T5792 |
prep |
of,minimum |
R3587 |
T5798 |
T5799 |
nummod |
two,cDNAs |
R3588 |
T5799 |
T5797 |
pobj |
cDNAs,of |
R3589 |
T5800 |
T5799 |
punct |
", ",cDNAs |
R3590 |
T5801 |
T5802 |
advmod |
at,least |
R3591 |
T5802 |
T5803 |
advmod |
least,one |
R3592 |
T5803 |
T5804 |
dep |
one,spliced |
R3593 |
T5804 |
T5799 |
relcl |
spliced,cDNAs |
R3594 |
T5805 |
T5803 |
prep |
of,one |
R3595 |
T5806 |
T5805 |
pobj |
which,of |
R3596 |
T5807 |
T5804 |
auxpass |
is,spliced |
R3597 |
T5808 |
T5792 |
punct |
),minimum |
R3598 |
T5809 |
T5792 |
punct |
", ",minimum |
R3599 |
T5810 |
T5792 |
cc |
and,minimum |
R3600 |
T5811 |
T5792 |
conj |
55,minimum |
R3601 |
T5812 |
T5813 |
punct |
(,% |
R3602 |
T5813 |
T5811 |
parataxis |
%,55 |
R3603 |
T5814 |
T5813 |
nummod |
67,% |
R3604 |
T5815 |
T5813 |
punct |
),% |
R3605 |
T5816 |
T5811 |
prep |
of,55 |
R3606 |
T5817 |
T5818 |
det |
the,genes |
R3607 |
T5818 |
T5816 |
pobj |
genes,of |
R3608 |
T5819 |
T5818 |
nummod |
82,genes |
R3609 |
T5820 |
T5821 |
prep |
for,have |
R3610 |
T5821 |
T5818 |
relcl |
have,genes |
R3611 |
T5822 |
T5820 |
pobj |
which,for |
R3612 |
T5823 |
T5821 |
nsubj |
we,have |
R3613 |
T5824 |
T5825 |
nummod |
four,cDNAs |
R3614 |
T5825 |
T5821 |
dobj |
cDNAs,have |
R3615 |
T5826 |
T5824 |
cc |
or,four |
R3616 |
T5827 |
T5824 |
conj |
more,four |
R3617 |
T5828 |
T5825 |
punct |
(,cDNAs |
R3618 |
T5829 |
T5825 |
cc |
and,cDNAs |
R3619 |
T5830 |
T5831 |
advmod |
thus,chance |
R3620 |
T5831 |
T5825 |
conj |
chance,cDNAs |
R3621 |
T5832 |
T5831 |
det |
a,chance |
R3622 |
T5833 |
T5831 |
amod |
higher,chance |
R3623 |
T5834 |
T5831 |
prep |
of,chance |
R3624 |
T5835 |
T5834 |
pcomp |
observing,of |
R3625 |
T5836 |
T5837 |
det |
any,splicing |
R3626 |
T5837 |
T5835 |
dobj |
splicing,observing |
R3627 |
T5838 |
T5837 |
amod |
alternate,splicing |
R3628 |
T5839 |
T5811 |
punct |
),55 |
R3629 |
T5840 |
T5841 |
punct |
(,Figure |
R3630 |
T5841 |
T5749 |
parataxis |
Figure,find |
R3631 |
T5842 |
T5841 |
nummod |
5,Figure |
R3632 |
T5843 |
T5841 |
punct |
),Figure |
R3633 |
T5844 |
T5749 |
punct |
.,find |
R3634 |
T5846 |
T5847 |
det |
These,events |
R3635 |
T5847 |
T5850 |
nsubjpass |
events,restricted |
R3636 |
T5848 |
T5847 |
amod |
alternative,events |
R3637 |
T5849 |
T5847 |
compound |
splice,events |
R3638 |
T5851 |
T5850 |
auxpass |
are,restricted |
R3639 |
T5852 |
T5853 |
advmod |
almost,all |
R3640 |
T5853 |
T5850 |
advmod |
all,restricted |
R3641 |
T5854 |
T5850 |
prep |
to,restricted |
R3642 |
T5855 |
T5856 |
det |
the,UTR |
R3643 |
T5856 |
T5854 |
pobj |
UTR,to |
R3644 |
T5857 |
T5856 |
nummod |
5,UTR |
R3645 |
T5858 |
T5857 |
punct |
',5 |
R3646 |
T5859 |
T5850 |
cc |
and,restricted |
R3647 |
T5860 |
T5850 |
conj |
include,restricted |
R3648 |
T5861 |
T5862 |
compound |
exon,skipping |
R3649 |
T5862 |
T5860 |
dobj |
skipping,include |
R3650 |
T5863 |
T5862 |
cc |
and,skipping |
R3651 |
T5864 |
T5865 |
amod |
alternate,splice |
R3652 |
T5865 |
T5866 |
nmod |
splice,use |
R3653 |
T5866 |
T5862 |
conj |
use,skipping |
R3654 |
T5867 |
T5865 |
punct |
-,splice |
R3655 |
T5868 |
T5865 |
appos |
donor,splice |
R3656 |
T5869 |
T5868 |
cc |
and,donor |
R3657 |
T5870 |
T5871 |
punct |
-,acceptor |
R3658 |
T5871 |
T5868 |
conj |
acceptor,donor |
R3659 |
T5872 |
T5850 |
punct |
.,restricted |
R3660 |
T5874 |
T5875 |
advmod |
At,least |
R3661 |
T5875 |
T5876 |
advmod |
least,half |
R3662 |
T5876 |
T5877 |
nsubj |
half,utilize |
R3663 |
T5878 |
T5876 |
prep |
of,half |
R3664 |
T5879 |
T5880 |
det |
the,receptors |
R3665 |
T5880 |
T5878 |
pobj |
receptors,of |
R3666 |
T5881 |
T5880 |
amod |
olfactory,receptors |
R3667 |
T5882 |
T5880 |
acl |
represented,receptors |
R3668 |
T5883 |
T5882 |
prep |
in,represented |
R3669 |
T5884 |
T5885 |
poss |
our,collection |
R3670 |
T5885 |
T5883 |
pobj |
collection,in |
R3671 |
T5886 |
T5885 |
compound |
cDNA,collection |
R3672 |
T5887 |
T5888 |
amod |
more,one |
R3673 |
T5888 |
T5890 |
nummod |
one,site |
R3674 |
T5889 |
T5888 |
quantmod |
than,one |
R3675 |
T5890 |
T5877 |
dobj |
site,utilize |
R3676 |
T5891 |
T5890 |
compound |
polyadenylation,site |
R3677 |
T5892 |
T5877 |
punct |
", ",utilize |
R3678 |
T5893 |
T5877 |
advcl |
resulting,utilize |
R3679 |
T5894 |
T5893 |
prep |
in,resulting |
R3680 |
T5895 |
T5896 |
amod |
alternative,isoforms |
R3681 |
T5896 |
T5894 |
pobj |
isoforms,in |
R3682 |
T5897 |
T5898 |
nummod |
3,UTR |
R3683 |
T5898 |
T5896 |
compound |
UTR,isoforms |
R3684 |
T5899 |
T5897 |
punct |
',3 |
R3685 |
T5900 |
T5877 |
punct |
.,utilize |
R3686 |
T5902 |
T5903 |
nsubj |
We,estimated |
R3687 |
T5904 |
T5903 |
aux |
have,estimated |
R3688 |
T5905 |
T5903 |
advmod |
crudely,estimated |
R3689 |
T5906 |
T5907 |
nummod |
3,UTR |
R3690 |
T5907 |
T5909 |
compound |
UTR,size |
R3691 |
T5908 |
T5907 |
punct |
',UTR |
R3692 |
T5909 |
T5903 |
dobj |
size,estimated |
R3693 |
T5910 |
T5903 |
prep |
for,estimated |
R3694 |
T5911 |
T5912 |
nummod |
"1,169",clones |
R3695 |
T5912 |
T5910 |
pobj |
clones,for |
R3696 |
T5913 |
T5912 |
compound |
cDNA,clones |
R3697 |
T5914 |
T5903 |
prep |
by,estimated |
R3698 |
T5915 |
T5914 |
pcomp |
combining,by |
R3699 |
T5916 |
T5917 |
amod |
approximate,size |
R3700 |
T5917 |
T5919 |
compound |
size,information |
R3701 |
T5918 |
T5917 |
compound |
insert,size |
R3702 |
T5919 |
T5915 |
dobj |
information,combining |
R3703 |
T5920 |
T5915 |
prep |
with,combining |
R3704 |
T5921 |
T5922 |
nummod |
5,sequence |
R3705 |
T5922 |
T5924 |
compound |
sequence,data |
R3706 |
T5923 |
T5921 |
punct |
',5 |
R3707 |
T5924 |
T5920 |
pobj |
data,with |
R3708 |
T5925 |
T5903 |
punct |
.,estimated |
R3709 |
T5927 |
T5928 |
amod |
More,one |
R3710 |
T5928 |
T5930 |
nummod |
one,isoform |
R3711 |
T5929 |
T5928 |
quantmod |
than,one |
R3712 |
T5930 |
T5934 |
nsubjpass |
isoform,predicted |
R3713 |
T5931 |
T5932 |
nummod |
3,UTR |
R3714 |
T5932 |
T5930 |
compound |
UTR,isoform |
R3715 |
T5933 |
T5931 |
punct |
',3 |
R3716 |
T5935 |
T5934 |
auxpass |
is,predicted |
R3717 |
T5936 |
T5934 |
prep |
for,predicted |
R3718 |
T5937 |
T5938 |
quantmod |
43,77 |
R3719 |
T5938 |
T5941 |
nummod |
77,genes |
R3720 |
T5939 |
T5938 |
quantmod |
of,77 |
R3721 |
T5940 |
T5938 |
quantmod |
the,77 |
R3722 |
T5941 |
T5936 |
pobj |
genes,for |
R3723 |
T5942 |
T5943 |
punct |
(,% |
R3724 |
T5943 |
T5938 |
parataxis |
%,77 |
R3725 |
T5944 |
T5943 |
nummod |
56,% |
R3726 |
T5945 |
T5943 |
punct |
),% |
R3727 |
T5946 |
T5947 |
prep |
for,are |
R3728 |
T5947 |
T5941 |
relcl |
are,genes |
R3729 |
T5948 |
T5946 |
pobj |
which,for |
R3730 |
T5949 |
T5947 |
expl |
there,are |
R3731 |
T5950 |
T5951 |
advmod |
at,four |
R3732 |
T5951 |
T5953 |
nummod |
four,cDNAs |
R3733 |
T5952 |
T5951 |
advmod |
least,four |
R3734 |
T5953 |
T5947 |
attr |
cDNAs,are |
R3735 |
T5954 |
T5953 |
prep |
with,cDNAs |
R3736 |
T5955 |
T5956 |
nummod |
3,UTR |
R3737 |
T5956 |
T5958 |
compound |
UTR,size |
R3738 |
T5957 |
T5955 |
punct |
',3 |
R3739 |
T5958 |
T5959 |
compound |
size,information |
R3740 |
T5959 |
T5954 |
pobj |
information,with |
R3741 |
T5960 |
T5934 |
punct |
.,predicted |
R3742 |
T5962 |
T5963 |
nsubj |
We,confirmed |
R3743 |
T5964 |
T5965 |
det |
the,isoforms |
R3744 |
T5965 |
T5963 |
dobj |
isoforms,confirmed |
R3745 |
T5966 |
T5967 |
amod |
alternative,polyadenylation |
R3746 |
T5967 |
T5965 |
compound |
polyadenylation,isoforms |
R3747 |
T5968 |
T5965 |
prep |
of,isoforms |
R3748 |
T5969 |
T5970 |
quantmod |
four,five |
R3749 |
T5970 |
T5973 |
nummod |
five,genes |
R3750 |
T5971 |
T5970 |
quantmod |
out,five |
R3751 |
T5972 |
T5970 |
quantmod |
of,five |
R3752 |
T5973 |
T5968 |
pobj |
genes,of |
R3753 |
T5974 |
T5973 |
amod |
selected,genes |
R3754 |
T5975 |
T5963 |
prep |
by,confirmed |
R3755 |
T5976 |
T5975 |
pcomp |
sequencing,by |
R3756 |
T5977 |
T5978 |
det |
the,end |
R3757 |
T5978 |
T5976 |
dobj |
end,sequencing |
R3758 |
T5979 |
T5978 |
nummod |
3,end |
R3759 |
T5980 |
T5979 |
punct |
',3 |
R3760 |
T5981 |
T5978 |
prep |
of,end |
R3761 |
T5982 |
T5983 |
nummod |
14,clones |
R3762 |
T5983 |
T5981 |
pobj |
clones,of |
R3763 |
T5984 |
T5983 |
compound |
cDNA,clones |
R3764 |
T5985 |
T5963 |
punct |
.,confirmed |
R3765 |
T5987 |
T5988 |
det |
These,sequences |
R3766 |
T5988 |
T5990 |
nsubj |
sequences,revealed |
R3767 |
T5989 |
T5988 |
nummod |
14,sequences |
R3768 |
T5991 |
T5990 |
advmod |
also,revealed |
R3769 |
T5992 |
T5993 |
nummod |
one,cDNA |
R3770 |
T5993 |
T5990 |
dobj |
cDNA,revealed |
R3771 |
T5994 |
T5995 |
advmod |
where,added |
R3772 |
T5995 |
T5993 |
relcl |
added,cDNA |
R3773 |
T5996 |
T5997 |
det |
the,tail |
R3774 |
T5997 |
T5995 |
nsubjpass |
tail,added |
R3775 |
T5998 |
T5997 |
nmod |
poly,tail |
R3776 |
T5999 |
T6000 |
punct |
(,A |
R3777 |
T6000 |
T5997 |
parataxis |
A,tail |
R3778 |
T6001 |
T6000 |
punct |
),A |
R3779 |
T6002 |
T5995 |
auxpass |
was,added |
R3780 |
T6003 |
T6004 |
nummod |
27,bp |
R3781 |
T6004 |
T6005 |
npadvmod |
bp,before |
R3782 |
T6005 |
T5995 |
prep |
before,added |
R3783 |
T6006 |
T6007 |
det |
the,codon |
R3784 |
T6007 |
T6005 |
pobj |
codon,before |
R3785 |
T6008 |
T6007 |
compound |
stop,codon |
R3786 |
T6009 |
T5993 |
punct |
", ",cDNA |
R3787 |
T6010 |
T5993 |
cc |
and,cDNA |
R3788 |
T6011 |
T5993 |
conj |
another,cDNA |
R3789 |
T6012 |
T6013 |
advmod |
where,spliced |
R3790 |
T6013 |
T6011 |
relcl |
spliced,another |
R3791 |
T6014 |
T6015 |
det |
an,intron |
R3792 |
T6015 |
T6013 |
nsubjpass |
intron,spliced |
R3793 |
T6016 |
T6013 |
auxpass |
was,spliced |
R3794 |
T6017 |
T6013 |
prep |
out,spliced |
R3795 |
T6018 |
T6017 |
prep |
of,out |
R3796 |
T6019 |
T6020 |
det |
the,UTR |
R3797 |
T6020 |
T6018 |
pobj |
UTR,of |
R3798 |
T6021 |
T6020 |
nummod |
3,UTR |
R3799 |
T6022 |
T6021 |
punct |
',3 |
R3800 |
T6023 |
T5990 |
punct |
", ",revealed |
R3801 |
T6024 |
T5990 |
advcl |
contrary,revealed |
R3802 |
T6025 |
T6024 |
prep |
to,contrary |
R3803 |
T6026 |
T6027 |
det |
the,stereotype |
R3804 |
T6027 |
T6025 |
pobj |
stereotype,to |
R3805 |
T6028 |
T6027 |
amod |
conventional,stereotype |
R3806 |
T6029 |
T6027 |
prep |
of,stereotype |
R3807 |
T6030 |
T6031 |
amod |
olfactory,receptor |
R3808 |
T6031 |
T6032 |
compound |
receptor,gene |
R3809 |
T6032 |
T6033 |
compound |
gene,structure |
R3810 |
T6033 |
T6029 |
pobj |
structure,of |
R3811 |
T6034 |
T5990 |
punct |
.,revealed |
R3822 |
T6417 |
T6418 |
det |
A,subset |
R3823 |
T6418 |
T6419 |
nsubj |
subset,shows |
R3824 |
T6420 |
T6418 |
prep |
of,subset |
R3825 |
T6421 |
T6422 |
amod |
olfactory,receptors |
R3826 |
T6422 |
T6420 |
pobj |
receptors,of |
R3827 |
T6423 |
T6424 |
amod |
unusual,splicing |
R3828 |
T6424 |
T6419 |
dobj |
splicing,shows |
R3829 |
T6426 |
T6427 |
nsubj |
We,identified |
R3830 |
T6428 |
T6429 |
nummod |
62,cDNAs |
R3831 |
T6429 |
T6427 |
dobj |
cDNAs,identified |
R3832 |
T6430 |
T6431 |
punct |
(,% |
R3833 |
T6431 |
T6429 |
parataxis |
%,cDNAs |
R3834 |
T6432 |
T6431 |
nummod |
5,% |
R3835 |
T6433 |
T6431 |
prep |
of,% |
R3836 |
T6434 |
T6435 |
det |
all,clones |
R3837 |
T6435 |
T6433 |
pobj |
clones,of |
R3838 |
T6436 |
T6437 |
amod |
olfactory,receptor |
R3839 |
T6437 |
T6435 |
compound |
receptor,clones |
R3840 |
T6438 |
T6431 |
punct |
),% |
R3841 |
T6439 |
T6427 |
prep |
from,identified |
R3842 |
T6440 |
T6441 |
nummod |
38,receptors |
R3843 |
T6441 |
T6439 |
pobj |
receptors,from |
R3844 |
T6442 |
T6441 |
amod |
intact,receptors |
R3845 |
T6443 |
T6441 |
amod |
olfactory,receptors |
R3846 |
T6444 |
T6441 |
cc |
and,receptors |
R3847 |
T6445 |
T6446 |
nummod |
one,pseudogene |
R3848 |
T6446 |
T6441 |
conj |
pseudogene,receptors |
R3849 |
T6447 |
T6448 |
amod |
olfactory,receptor |
R3850 |
T6448 |
T6446 |
compound |
receptor,pseudogene |
R3851 |
T6449 |
T6450 |
advmod |
where,used |
R3852 |
T6450 |
T6446 |
relcl |
used,pseudogene |
R3853 |
T6451 |
T6452 |
det |
a,site |
R3854 |
T6452 |
T6450 |
nsubjpass |
site,used |
R3855 |
T6453 |
T6452 |
compound |
splice,site |
R3856 |
T6454 |
T6452 |
prep |
within,site |
R3857 |
T6455 |
T6456 |
det |
the,region |
R3858 |
T6456 |
T6454 |
pobj |
region,within |
R3859 |
T6457 |
T6458 |
npadvmod |
protein,coding |
R3860 |
T6458 |
T6456 |
amod |
coding,region |
R3861 |
T6459 |
T6458 |
punct |
-,coding |
R3862 |
T6460 |
T6450 |
auxpass |
is,used |
R3863 |
T6461 |
T6427 |
punct |
.,identified |
R3864 |
T6463 |
T6464 |
prep |
For,appears |
R3865 |
T6465 |
T6466 |
nummod |
two,genes |
R3866 |
T6466 |
T6463 |
pobj |
genes,For |
R3867 |
T6467 |
T6468 |
punct |
(,Figure |
R3868 |
T6468 |
T6466 |
parataxis |
Figure,genes |
R3869 |
T6469 |
T6470 |
amod |
top,cDNAs |
R3870 |
T6470 |
T6468 |
dep |
cDNAs,Figure |
R3871 |
T6471 |
T6470 |
nummod |
two,cDNAs |
R3872 |
T6472 |
T6468 |
punct |
", ",Figure |
R3873 |
T6473 |
T6468 |
nummod |
6,Figure |
R3874 |
T6474 |
T6468 |
punct |
),Figure |
R3875 |
T6475 |
T6464 |
punct |
", ",appears |
R3876 |
T6476 |
T6477 |
det |
the,protein |
R3877 |
T6477 |
T6464 |
nsubj |
protein,appears |
R3878 |
T6478 |
T6477 |
amod |
predicted,protein |
R3879 |
T6479 |
T6480 |
aux |
to,be |
R3880 |
T6480 |
T6464 |
xcomp |
be,appears |
R3881 |
T6481 |
T6482 |
det |
an,receptor |
R3882 |
T6482 |
T6480 |
attr |
receptor,be |
R3883 |
T6483 |
T6482 |
amod |
intact,receptor |
R3884 |
T6484 |
T6482 |
amod |
olfactory,receptor |
R3885 |
T6485 |
T6482 |
prep |
with,receptor |
R3886 |
T6486 |
T6487 |
nummod |
three,acids |
R3887 |
T6487 |
T6485 |
pobj |
acids,with |
R3888 |
T6488 |
T6486 |
cc |
or,three |
R3889 |
T6489 |
T6486 |
conj |
ten,three |
R3890 |
T6490 |
T6487 |
compound |
amino,acids |
R3891 |
T6491 |
T6487 |
punct |
", ",acids |
R3892 |
T6492 |
T6487 |
prep |
including,acids |
R3893 |
T6493 |
T6494 |
det |
the,methionine |
R3894 |
T6494 |
T6492 |
pobj |
methionine,including |
R3895 |
T6495 |
T6494 |
amod |
initiating,methionine |
R3896 |
T6496 |
T6487 |
punct |
", ",acids |
R3897 |
T6497 |
T6487 |
acl |
contributed,acids |
R3898 |
T6498 |
T6497 |
agent |
by,contributed |
R3899 |
T6499 |
T6500 |
det |
an,exon |
R3900 |
T6500 |
T6498 |
pobj |
exon,by |
R3901 |
T6501 |
T6500 |
amod |
upstream,exon |
R3902 |
T6502 |
T6464 |
punct |
.,appears |
R3903 |
T6504 |
T6505 |
det |
A,structure |
R3904 |
T6505 |
T6508 |
nsubjpass |
structure,described |
R3905 |
T6506 |
T6505 |
amod |
similar,structure |
R3906 |
T6507 |
T6505 |
compound |
gene,structure |
R3907 |
T6509 |
T6508 |
auxpass |
was,described |
R3908 |
T6510 |
T6508 |
advmod |
previously,described |
R3909 |
T6511 |
T6508 |
prep |
for,described |
R3910 |
T6512 |
T6513 |
det |
a,receptor |
R3911 |
T6513 |
T6511 |
pobj |
receptor,for |
R3912 |
T6514 |
T6513 |
amod |
human,receptor |
R3913 |
T6515 |
T6513 |
amod |
olfactory,receptor |
R3914 |
T6516 |
T6517 |
punct |
[,25 |
R3915 |
T6517 |
T6508 |
parataxis |
25,described |
R3916 |
T6518 |
T6517 |
punct |
],25 |
R3917 |
T6519 |
T6508 |
punct |
.,described |
R3918 |
T6521 |
T6522 |
nsubj |
One,has |
R3919 |
T6523 |
T6521 |
prep |
of,One |
R3920 |
T6524 |
T6525 |
det |
these,genes |
R3921 |
T6525 |
T6523 |
pobj |
genes,of |
R3922 |
T6526 |
T6525 |
nummod |
two,genes |
R3923 |
T6527 |
T6525 |
compound |
mouse,genes |
R3924 |
T6528 |
T6529 |
det |
no,codon |
R3925 |
T6529 |
T6522 |
dobj |
codon,has |
R3926 |
T6530 |
T6529 |
compound |
start,codon |
R3927 |
T6531 |
T6529 |
prep |
in,codon |
R3928 |
T6532 |
T6533 |
poss |
its,exon |
R3929 |
T6533 |
T6531 |
pobj |
exon,in |
R3930 |
T6534 |
T6535 |
advmod |
otherwise,intact |
R3931 |
T6535 |
T6533 |
amod |
intact,exon |
R3932 |
T6536 |
T6533 |
amod |
main,exon |
R3933 |
T6537 |
T6533 |
amod |
coding,exon |
R3934 |
T6538 |
T6522 |
punct |
.,has |
R3935 |
T6540 |
T6541 |
det |
The,splicing |
R3936 |
T6541 |
T6543 |
nsubj |
splicing,rescues |
R3937 |
T6542 |
T6541 |
amod |
unusual,splicing |
R3938 |
T6544 |
T6543 |
advmod |
thus,rescues |
R3939 |
T6545 |
T6546 |
dep |
what,be |
R3940 |
T6546 |
T6543 |
ccomp |
be,rescues |
R3941 |
T6547 |
T6546 |
aux |
would,be |
R3942 |
T6548 |
T6546 |
advmod |
otherwise,be |
R3943 |
T6549 |
T6550 |
det |
a,gene |
R3944 |
T6550 |
T6546 |
attr |
gene,be |
R3945 |
T6551 |
T6550 |
amod |
dysfunctional,gene |
R3946 |
T6552 |
T6543 |
punct |
.,rescues |
R3947 |
T6554 |
T6555 |
prep |
In,encode |
R3948 |
T6556 |
T6557 |
amod |
most,cases |
R3949 |
T6557 |
T6554 |
pobj |
cases,In |
R3950 |
T6558 |
T6557 |
punct |
(,cases |
R3951 |
T6559 |
T6560 |
quantmod |
60,62 |
R3952 |
T6560 |
T6563 |
nummod |
62,cDNAs |
R3953 |
T6561 |
T6560 |
quantmod |
out,62 |
R3954 |
T6562 |
T6560 |
quantmod |
of,62 |
R3955 |
T6563 |
T6557 |
appos |
cDNAs,cases |
R3956 |
T6564 |
T6557 |
punct |
),cases |
R3957 |
T6565 |
T6555 |
punct |
", ",encode |
R3958 |
T6566 |
T6567 |
det |
the,transcript |
R3959 |
T6567 |
T6569 |
nsubj |
transcript,appears |
R3960 |
T6568 |
T6567 |
amod |
unusual,transcript |
R3961 |
T6569 |
T6555 |
ccomp |
appears,encode |
R3962 |
T6570 |
T6571 |
aux |
to,be |
R3963 |
T6571 |
T6569 |
xcomp |
be,appears |
R3964 |
T6572 |
T6573 |
det |
an,form |
R3965 |
T6573 |
T6571 |
attr |
form,be |
R3966 |
T6574 |
T6573 |
amod |
aberrant,form |
R3967 |
T6575 |
T6573 |
compound |
splice,form |
R3968 |
T6576 |
T6555 |
punct |
-,encode |
R3969 |
T6577 |
T6578 |
det |
the,transcript |
R3970 |
T6578 |
T6555 |
nsubj |
transcript,encode |
R3971 |
T6579 |
T6555 |
aux |
would,encode |
R3972 |
T6580 |
T6555 |
advmod |
probably,encode |
R3973 |
T6581 |
T6555 |
neg |
not,encode |
R3974 |
T6582 |
T6583 |
det |
a,protein |
R3975 |
T6583 |
T6555 |
dobj |
protein,encode |
R3976 |
T6584 |
T6583 |
amod |
functional,protein |
R3977 |
T6585 |
T6586 |
mark |
because,introduces |
R3978 |
T6586 |
T6555 |
advcl |
introduces,encode |
R3979 |
T6587 |
T6588 |
det |
the,splice |
R3980 |
T6588 |
T6586 |
nsubj |
splice,introduces |
R3981 |
T6589 |
T6590 |
det |
a,frameshift |
R3982 |
T6590 |
T6586 |
dobj |
frameshift,introduces |
R3983 |
T6591 |
T6586 |
cc |
or,introduces |
R3984 |
T6592 |
T6586 |
conj |
removes,introduces |
R3985 |
T6593 |
T6594 |
amod |
conserved,residues |
R3986 |
T6594 |
T6592 |
dobj |
residues,removes |
R3987 |
T6595 |
T6594 |
amod |
functional,residues |
R3988 |
T6596 |
T6597 |
punct |
(,Figure |
R3989 |
T6597 |
T6555 |
parataxis |
Figure,encode |
R3990 |
T6598 |
T6597 |
nummod |
6,Figure |
R3991 |
T6599 |
T6597 |
punct |
),Figure |
R3992 |
T6600 |
T6555 |
punct |
.,encode |
R3993 |
T6602 |
T6603 |
prep |
For,is |
R3994 |
T6604 |
T6605 |
nummod |
two,clones |
R3995 |
T6605 |
T6602 |
pobj |
clones,For |
R3996 |
T6606 |
T6607 |
punct |
(,Figure |
R3997 |
T6607 |
T6605 |
parataxis |
Figure,clones |
R3998 |
T6608 |
T6609 |
amod |
bottom,cDNAs |
R3999 |
T6609 |
T6607 |
dep |
cDNAs,Figure |
R4000 |
T6610 |
T6609 |
nummod |
two,cDNAs |
R4001 |
T6611 |
T6607 |
punct |
", ",Figure |
R4002 |
T6612 |
T6607 |
nummod |
6,Figure |
R4003 |
T6613 |
T6607 |
punct |
),Figure |
R4004 |
T6614 |
T6603 |
punct |
", ",is |
R4005 |
T6615 |
T6616 |
compound |
exon,order |
R4006 |
T6616 |
T6603 |
nsubj |
order,is |
R4007 |
T6617 |
T6616 |
prep |
in,order |
R4008 |
T6618 |
T6619 |
det |
the,clone |
R4009 |
T6619 |
T6617 |
pobj |
clone,in |
R4010 |
T6620 |
T6619 |
compound |
cDNA,clone |
R4011 |
T6621 |
T6603 |
acomp |
inconsistent,is |
R4012 |
T6622 |
T6621 |
prep |
with,inconsistent |
R4013 |
T6623 |
T6624 |
det |
the,sequence |
R4014 |
T6624 |
T6622 |
pobj |
sequence,with |
R4015 |
T6625 |
T6624 |
amod |
corresponding,sequence |
R4016 |
T6626 |
T6624 |
amod |
genomic,sequence |
R4017 |
T6627 |
T6603 |
punct |
.,is |
R4018 |
T6629 |
T6630 |
nsubj |
It,is |
R4019 |
T6630 |
T6631 |
ccomp |
is,suggest |
R4020 |
T6632 |
T6630 |
acomp |
difficult,is |
R4021 |
T6633 |
T6634 |
aux |
to,imagine |
R4022 |
T6634 |
T6630 |
xcomp |
imagine,is |
R4023 |
T6635 |
T6636 |
det |
what,kind |
R4024 |
T6636 |
T6637 |
dep |
kind,resulted |
R4025 |
T6637 |
T6634 |
ccomp |
resulted,imagine |
R4026 |
T6638 |
T6636 |
prep |
of,kind |
R4027 |
T6639 |
T6640 |
amod |
cloning,artefact |
R4028 |
T6640 |
T6638 |
pobj |
artefact,of |
R4029 |
T6641 |
T6637 |
prep |
in,resulted |
R4030 |
T6642 |
T6643 |
det |
these,cDNAs |
R4031 |
T6643 |
T6641 |
pobj |
cDNAs,in |
R4032 |
T6644 |
T6645 |
advmod |
severely,scrambled |
R4033 |
T6645 |
T6643 |
amod |
scrambled,cDNAs |
R4034 |
T6646 |
T6631 |
punct |
: ,suggest |
R4035 |
T6647 |
T6631 |
nsubj |
we,suggest |
R4036 |
T6648 |
T6649 |
mark |
that,derive |
R4037 |
T6649 |
T6631 |
ccomp |
derive,suggest |
R4038 |
T6650 |
T6649 |
nsubj |
they,derive |
R4039 |
T6651 |
T6649 |
prep |
from,derive |
R4040 |
T6652 |
T6653 |
amod |
real,transcripts |
R4041 |
T6653 |
T6651 |
pobj |
transcripts,from |
R4042 |
T6654 |
T6652 |
cc |
but,real |
R4043 |
T6655 |
T6652 |
conj |
rare,real |
R4044 |
T6656 |
T6631 |
punct |
.,suggest |
R4045 |
T6658 |
T6659 |
advmod |
However,suggests |
R4046 |
T6660 |
T6659 |
punct |
", ",suggests |
R4047 |
T6661 |
T6662 |
poss |
their,frequency |
R4048 |
T6662 |
T6659 |
nsubj |
frequency,suggests |
R4049 |
T6663 |
T6662 |
amod |
low,frequency |
R4050 |
T6664 |
T6662 |
prep |
in,frequency |
R4051 |
T6665 |
T6666 |
poss |
our,collection |
R4052 |
T6666 |
T6664 |
pobj |
collection,in |
R4053 |
T6667 |
T6666 |
compound |
cDNA,collection |
R4054 |
T6668 |
T6669 |
mark |
that,contribute |
R4055 |
T6669 |
T6659 |
ccomp |
contribute,suggests |
R4056 |
T6670 |
T6669 |
nsubj |
splicing,contribute |
R4057 |
T6671 |
T6670 |
amod |
contrary,splicing |
R4058 |
T6672 |
T6671 |
prep |
to,contrary |
R4059 |
T6673 |
T6674 |
amod |
genomic,organization |
R4060 |
T6674 |
T6672 |
pobj |
organization,to |
R4061 |
T6675 |
T6669 |
aux |
does,contribute |
R4062 |
T6676 |
T6669 |
neg |
not,contribute |
R4063 |
T6677 |
T6669 |
advmod |
significantly,contribute |
R4064 |
T6678 |
T6669 |
prep |
to,contribute |
R4065 |
T6679 |
T6680 |
det |
the,repertoire |
R4066 |
T6680 |
T6678 |
pobj |
repertoire,to |
R4067 |
T6681 |
T6682 |
amod |
olfactory,receptor |
R4068 |
T6682 |
T6680 |
compound |
receptor,repertoire |
R4069 |
T6683 |
T6680 |
compound |
transcript,repertoire |
R4070 |
T6684 |
T6659 |
punct |
.,suggests |
R4071 |
T6686 |
T6687 |
prep |
For,observe |
R4072 |
T6688 |
T6689 |
quantmod |
21,26 |
R4073 |
T6689 |
T6692 |
nummod |
26,genes |
R4074 |
T6690 |
T6689 |
quantmod |
of,26 |
R4075 |
T6691 |
T6689 |
quantmod |
the,26 |
R4076 |
T6692 |
T6686 |
pobj |
genes,For |
R4077 |
T6693 |
T6694 |
prep |
for,found |
R4078 |
T6694 |
T6692 |
relcl |
found,genes |
R4079 |
T6695 |
T6693 |
pobj |
which,for |
R4080 |
T6696 |
T6697 |
advmod |
unusually,spliced |
R4081 |
T6697 |
T6698 |
amod |
spliced,cDNAs |
R4082 |
T6698 |
T6694 |
nsubjpass |
cDNAs,found |
R4083 |
T6699 |
T6694 |
auxpass |
were,found |
R4084 |
T6700 |
T6687 |
punct |
", ",observe |
R4085 |
T6701 |
T6687 |
nsubj |
we,observe |
R4086 |
T6702 |
T6687 |
advmod |
also,observe |
R4087 |
T6703 |
T6704 |
det |
an,isoform |
R4088 |
T6704 |
T6687 |
dobj |
isoform,observe |
R4089 |
T6705 |
T6704 |
amod |
alternative,isoform |
R4090 |
T6706 |
T6704 |
punct |
(,isoform |
R4091 |
T6707 |
T6704 |
punct |
',isoform |
R4092 |
T6708 |
T6704 |
amod |
normal,isoform |
R4093 |
T6709 |
T6704 |
punct |
',isoform |
R4094 |
T6710 |
T6704 |
punct |
),isoform |
R4095 |
T6711 |
T6712 |
dep |
that,use |
R4096 |
T6712 |
T6704 |
relcl |
use,isoform |
R4097 |
T6713 |
T6712 |
aux |
does,use |
R4098 |
T6714 |
T6712 |
neg |
not,use |
R4099 |
T6715 |
T6716 |
compound |
splice,sites |
R4100 |
T6716 |
T6712 |
dobj |
sites,use |
R4101 |
T6717 |
T6716 |
prep |
within,sites |
R4102 |
T6718 |
T6719 |
det |
the,region |
R4103 |
T6719 |
T6717 |
pobj |
region,within |
R4104 |
T6720 |
T6719 |
amod |
coding,region |
R4105 |
T6721 |
T6687 |
punct |
.,observe |
R4106 |
T6723 |
T6724 |
punct |
(,identified |
R4107 |
T6725 |
T6724 |
prep |
For,identified |
R4108 |
T6726 |
T6727 |
det |
the,13 |
R4109 |
T6727 |
T6725 |
pobj |
13,For |
R4110 |
T6728 |
T6727 |
amod |
remaining,13 |
R4111 |
T6729 |
T6727 |
prep |
of,13 |
R4112 |
T6730 |
T6731 |
det |
the,genes |
R4113 |
T6731 |
T6729 |
pobj |
genes,of |
R4114 |
T6732 |
T6731 |
nummod |
3,genes |
R4115 |
T6733 |
T6732 |
punct |
',3 |
R4116 |
T6734 |
T6731 |
acl |
showing,genes |
R4117 |
T6735 |
T6736 |
amod |
odd,splicing |
R4118 |
T6736 |
T6734 |
dobj |
splicing,showing |
R4119 |
T6737 |
T6724 |
punct |
", ",identified |
R4120 |
T6738 |
T6724 |
nsubj |
we,identified |
R4121 |
T6739 |
T6724 |
aux |
have,identified |
R4122 |
T6740 |
T6741 |
advmod |
only,cDNA |
R4123 |
T6741 |
T6724 |
dobj |
cDNA,identified |
R4124 |
T6742 |
T6741 |
nummod |
one,cDNA |
R4125 |
T6743 |
T6724 |
cc |
so,identified |
R4126 |
T6744 |
T6745 |
aux |
have,determined |
R4127 |
T6745 |
T6724 |
conj |
determined,identified |
R4128 |
T6746 |
T6745 |
neg |
not,determined |
R4129 |
T6747 |
T6748 |
mark |
whether,are |
R4130 |
T6748 |
T6745 |
ccomp |
are,determined |
R4131 |
T6749 |
T6750 |
amod |
normal,isoforms |
R4132 |
T6750 |
T6748 |
nsubj |
isoforms,are |
R4133 |
T6751 |
T6748 |
acomp |
present,are |
R4134 |
T6752 |
T6724 |
punct |
.,identified |
R4135 |
T6753 |
T6724 |
punct |
),identified |
R4136 |
T6755 |
T6756 |
nsubjpass |
We,intrigued |
R4137 |
T6757 |
T6756 |
auxpass |
were,intrigued |
R4138 |
T6758 |
T6759 |
preconj |
both,by |
R4139 |
T6759 |
T6756 |
prep |
by,intrigued |
R4140 |
T6760 |
T6761 |
amod |
previous,reports |
R4141 |
T6761 |
T6759 |
pobj |
reports,by |
R4142 |
T6762 |
T6761 |
prep |
of,reports |
R4143 |
T6763 |
T6762 |
pobj |
splicing,of |
R4144 |
T6764 |
T6763 |
prep |
of,splicing |
R4145 |
T6765 |
T6766 |
amod |
human,receptors |
R4146 |
T6766 |
T6764 |
pobj |
receptors,of |
R4147 |
T6767 |
T6766 |
amod |
olfactory,receptors |
R4148 |
T6768 |
T6763 |
prep |
near,splicing |
R4149 |
T6769 |
T6770 |
det |
the,complex |
R4150 |
T6770 |
T6773 |
nmod |
complex,cluster |
R4151 |
T6771 |
T6770 |
amod |
major,complex |
R4152 |
T6772 |
T6770 |
nmod |
histocompatibility,complex |
R4153 |
T6773 |
T6768 |
pobj |
cluster,near |
R4154 |
T6774 |
T6770 |
punct |
(,complex |
R4155 |
T6775 |
T6770 |
appos |
MHC,complex |
R4156 |
T6776 |
T6773 |
punct |
),cluster |
R4157 |
T6777 |
T6773 |
punct |
", ",cluster |
R4158 |
T6778 |
T6779 |
advmod |
where,splice |
R4159 |
T6779 |
T6773 |
relcl |
splice,cluster |
R4160 |
T6780 |
T6781 |
amod |
several,genes |
R4161 |
T6781 |
T6779 |
nsubj |
genes,splice |
R4162 |
T6782 |
T6779 |
prep |
over,splice |
R4163 |
T6783 |
T6784 |
amod |
long,distances |
R4164 |
T6784 |
T6782 |
pobj |
distances,over |
R4165 |
T6785 |
T6779 |
prep |
to,splice |
R4166 |
T6786 |
T6787 |
det |
a,exon |
R4167 |
T6787 |
T6785 |
pobj |
exon,to |
R4168 |
T6788 |
T6787 |
amod |
common,exon |
R4169 |
T6789 |
T6787 |
amod |
upstream,exon |
R4170 |
T6790 |
T6791 |
punct |
[,27 |
R4171 |
T6791 |
T6773 |
parataxis |
27,cluster |
R4172 |
T6792 |
T6791 |
nummod |
26,27 |
R4173 |
T6793 |
T6791 |
punct |
",",27 |
R4174 |
T6794 |
T6791 |
punct |
],27 |
R4175 |
T6795 |
T6759 |
cc |
and,by |
R4176 |
T6796 |
T6759 |
conj |
by,by |
R4177 |
T6797 |
T6798 |
det |
the,idea |
R4178 |
T6798 |
T6796 |
pobj |
idea,by |
R4179 |
T6799 |
T6800 |
mark |
that,achieved |
R4180 |
T6800 |
T6798 |
acl |
achieved,idea |
R4181 |
T6801 |
T6802 |
amod |
olfactory,receptor |
R4182 |
T6802 |
T6803 |
nmod |
receptor,control |
R4183 |
T6803 |
T6800 |
nsubjpass |
control,achieved |
R4184 |
T6804 |
T6803 |
amod |
transcriptional,control |
R4185 |
T6805 |
T6800 |
aux |
could,achieved |
R4186 |
T6806 |
T6800 |
auxpass |
be,achieved |
R4187 |
T6807 |
T6800 |
prep |
by,achieved |
R4188 |
T6808 |
T6809 |
compound |
DNA,mechanisms |
R4189 |
T6809 |
T6807 |
pobj |
mechanisms,by |
R4190 |
T6810 |
T6809 |
compound |
recombination,mechanisms |
R4191 |
T6811 |
T6800 |
punct |
", ",achieved |
R4192 |
T6812 |
T6813 |
advmod |
perhaps,with |
R4193 |
T6813 |
T6800 |
prep |
with,achieved |
R4194 |
T6814 |
T6815 |
det |
the,result |
R4195 |
T6815 |
T6813 |
pobj |
result,with |
R4196 |
T6816 |
T6817 |
mark |
that,contain |
R4197 |
T6817 |
T6815 |
acl |
contain,result |
R4198 |
T6818 |
T6817 |
nsubj |
transcripts,contain |
R4199 |
T6819 |
T6817 |
aux |
would,contain |
R4200 |
T6820 |
T6821 |
det |
some,sequence |
R4201 |
T6821 |
T6817 |
dobj |
sequence,contain |
R4202 |
T6822 |
T6821 |
prep |
from,sequence |
R4203 |
T6823 |
T6824 |
det |
another,locus |
R4204 |
T6824 |
T6822 |
pobj |
locus,from |
R4205 |
T6825 |
T6756 |
punct |
.,intrigued |
R4206 |
T6827 |
T6828 |
nsubj |
We,verified |
R4207 |
T6829 |
T6828 |
advmod |
therefore,verified |
R4208 |
T6830 |
T6831 |
mark |
that,matches |
R4209 |
T6831 |
T6828 |
ccomp |
matches,verified |
R4210 |
T6832 |
T6833 |
det |
the,sequence |
R4211 |
T6833 |
T6831 |
nsubj |
sequence,matches |
R4212 |
T6834 |
T6833 |
amod |
entire,sequence |
R4213 |
T6835 |
T6833 |
prep |
of,sequence |
R4214 |
T6836 |
T6837 |
det |
each,EST |
R4215 |
T6837 |
T6835 |
pobj |
EST,of |
R4216 |
T6838 |
T6839 |
amod |
olfactory,receptor |
R4217 |
T6839 |
T6837 |
compound |
receptor,EST |
R4218 |
T6840 |
T6841 |
det |
the,gene |
R4219 |
T6841 |
T6843 |
poss |
gene,territory |
R4220 |
T6842 |
T6841 |
amod |
corresponding,gene |
R4221 |
T6843 |
T6831 |
dobj |
territory,matches |
R4222 |
T6844 |
T6841 |
case |
's,gene |
R4223 |
T6845 |
T6843 |
amod |
genomic,territory |
R4224 |
T6846 |
T6843 |
punct |
',territory |
R4225 |
T6847 |
T6843 |
punct |
',territory |
R4226 |
T6848 |
T6843 |
punct |
(,territory |
R4227 |
T6849 |
T6843 |
acl |
defined,territory |
R4228 |
T6850 |
T6849 |
prep |
for,defined |
R4229 |
T6851 |
T6852 |
det |
this,purpose |
R4230 |
T6852 |
T6850 |
pobj |
purpose,for |
R4231 |
T6853 |
T6849 |
prep |
as,defined |
R4232 |
T6854 |
T6853 |
prep |
from,as |
R4233 |
T6855 |
T6856 |
nummod |
1,kb |
R4234 |
T6856 |
T6857 |
npadvmod |
kb,after |
R4235 |
T6857 |
T6854 |
prep |
after,from |
R4236 |
T6858 |
T6859 |
det |
the,gene |
R4237 |
T6859 |
T6857 |
pobj |
gene,after |
R4238 |
T6860 |
T6859 |
amod |
preceding,gene |
R4239 |
T6861 |
T6854 |
prep |
to,from |
R4240 |
T6862 |
T6863 |
nummod |
1,kb |
R4241 |
T6863 |
T6864 |
npadvmod |
kb,after |
R4242 |
T6864 |
T6861 |
prep |
after,to |
R4243 |
T6865 |
T6866 |
det |
the,gene |
R4244 |
T6866 |
T6867 |
poss |
gene,codon |
R4245 |
T6867 |
T6864 |
pobj |
codon,after |
R4246 |
T6868 |
T6866 |
case |
's,gene |
R4247 |
T6869 |
T6867 |
compound |
stop,codon |
R4248 |
T6870 |
T6828 |
punct |
),verified |
R4249 |
T6871 |
T6828 |
punct |
.,verified |
R4250 |
T6873 |
T6874 |
nsubj |
We,found |
R4251 |
T6875 |
T6876 |
det |
no,cDNAs |
R4252 |
T6876 |
T6874 |
dobj |
cDNAs,found |
R4253 |
T6877 |
T6878 |
advmod |
where,encompassed |
R4254 |
T6878 |
T6876 |
relcl |
encompassed,cDNAs |
R4255 |
T6879 |
T6878 |
nsubj |
introns,encompassed |
R4256 |
T6880 |
T6881 |
amod |
other,genes |
R4257 |
T6881 |
T6878 |
dobj |
genes,encompassed |
R4258 |
T6882 |
T6883 |
amod |
olfactory,receptor |
R4259 |
T6883 |
T6881 |
compound |
receptor,genes |
R4260 |
T6884 |
T6878 |
punct |
", ",encompassed |
R4261 |
T6885 |
T6886 |
mark |
as,reported |
R4262 |
T6886 |
T6878 |
advcl |
reported,encompassed |
R4263 |
T6887 |
T6886 |
prep |
for,reported |
R4264 |
T6888 |
T6889 |
amod |
olfactory,receptors |
R4265 |
T6889 |
T6887 |
pobj |
receptors,for |
R4266 |
T6890 |
T6889 |
prep |
in,receptors |
R4267 |
T6891 |
T6892 |
det |
the,region |
R4268 |
T6892 |
T6890 |
pobj |
region,in |
R4269 |
T6893 |
T6894 |
amod |
human,MHC |
R4270 |
T6894 |
T6892 |
compound |
MHC,region |
R4271 |
T6895 |
T6896 |
punct |
[,27 |
R4272 |
T6896 |
T6886 |
parataxis |
27,reported |
R4273 |
T6897 |
T6896 |
nummod |
26,27 |
R4274 |
T6898 |
T6896 |
punct |
",",27 |
R4275 |
T6899 |
T6896 |
punct |
],27 |
R4276 |
T6900 |
T6874 |
punct |
.,found |
R4277 |
T6902 |
T6903 |
nummod |
Six,cDNAs |
R4278 |
T6903 |
T6904 |
nsubj |
cDNAs,extend |
R4279 |
T6905 |
T6904 |
aux |
do,extend |
R4280 |
T6906 |
T6904 |
advmod |
further,extend |
R4281 |
T6907 |
T6906 |
prep |
than,further |
R4282 |
T6908 |
T6909 |
det |
a,gene |
R4283 |
T6909 |
T6911 |
poss |
gene,territory |
R4284 |
T6910 |
T6909 |
amod |
single,gene |
R4285 |
T6911 |
T6907 |
pobj |
territory,than |
R4286 |
T6912 |
T6909 |
case |
's,gene |
R4287 |
T6913 |
T6911 |
punct |
',territory |
R4288 |
T6914 |
T6904 |
punct |
',extend |
R4289 |
T6915 |
T6904 |
cc |
and,extend |
R4290 |
T6916 |
T6904 |
conj |
appear,extend |
R4291 |
T6917 |
T6918 |
neg |
not,be |
R4292 |
T6918 |
T6916 |
xcomp |
be,appear |
R4293 |
T6919 |
T6918 |
aux |
to,be |
R4294 |
T6920 |
T6918 |
attr |
artifacts,be |
R4295 |
T6921 |
T6920 |
prep |
of,artifacts |
R4296 |
T6922 |
T6923 |
det |
the,process |
R4297 |
T6923 |
T6921 |
pobj |
process,of |
R4298 |
T6924 |
T6923 |
nmod |
sequencing,process |
R4299 |
T6925 |
T6924 |
cc |
or,sequencing |
R4300 |
T6926 |
T6924 |
conj |
analysis,sequencing |
R4301 |
T6927 |
T6904 |
punct |
.,extend |
R4302 |
T6929 |
T6930 |
prep |
In,use |
R4303 |
T6931 |
T6929 |
pobj |
each,In |
R4304 |
T6932 |
T6931 |
prep |
of,each |
R4305 |
T6933 |
T6934 |
det |
these,cases |
R4306 |
T6934 |
T6932 |
pobj |
cases,of |
R4307 |
T6935 |
T6930 |
punct |
", ",use |
R4308 |
T6936 |
T6937 |
det |
the,clones |
R4309 |
T6937 |
T6930 |
nsubj |
clones,use |
R4310 |
T6938 |
T6939 |
compound |
splice,sites |
R4311 |
T6939 |
T6930 |
dobj |
sites,use |
R4312 |
T6940 |
T6930 |
prep |
within,use |
R4313 |
T6941 |
T6942 |
det |
the,UTR |
R4314 |
T6942 |
T6940 |
pobj |
UTR,within |
R4315 |
T6943 |
T6942 |
nummod |
3,UTR |
R4316 |
T6944 |
T6943 |
punct |
',3 |
R4317 |
T6945 |
T6930 |
cc |
and,use |
R4318 |
T6946 |
T6947 |
advmod |
thus,extend |
R4319 |
T6947 |
T6930 |
conj |
extend,use |
R4320 |
T6948 |
T6949 |
advmod |
further,downstream |
R4321 |
T6949 |
T6947 |
advmod |
downstream,extend |
R4322 |
T6950 |
T6948 |
prep |
than,further |
R4323 |
T6951 |
T6952 |
det |
the,kb |
R4324 |
T6952 |
T6950 |
pobj |
kb,than |
R4325 |
T6953 |
T6952 |
amod |
arbitrary,kb |
R4326 |
T6954 |
T6952 |
nummod |
1,kb |
R4327 |
T6955 |
T6949 |
prep |
of,downstream |
R4328 |
T6956 |
T6957 |
det |
the,codon |
R4329 |
T6957 |
T6955 |
pobj |
codon,of |
R4330 |
T6958 |
T6957 |
compound |
stop,codon |
R4331 |
T6959 |
T6930 |
punct |
.,use |
R4332 |
T6961 |
T6962 |
nsubj |
Five,use |
R4333 |
T6963 |
T6961 |
prep |
of,Five |
R4334 |
T6964 |
T6965 |
det |
these,cDNAs |
R4335 |
T6965 |
T6963 |
pobj |
cDNAs,of |
R4336 |
T6966 |
T6965 |
nummod |
six,cDNAs |
R4337 |
T6967 |
T6962 |
advmod |
also,use |
R4338 |
T6968 |
T6969 |
compound |
splice,donor |
R4339 |
T6969 |
T6971 |
compound |
donor,sites |
R4340 |
T6970 |
T6969 |
punct |
-,donor |
R4341 |
T6971 |
T6962 |
dobj |
sites,use |
R4342 |
T6972 |
T6962 |
prep |
within,use |
R4343 |
T6973 |
T6974 |
det |
the,region |
R4344 |
T6974 |
T6972 |
pobj |
region,within |
R4345 |
T6975 |
T6974 |
amod |
coding,region |
R4346 |
T6976 |
T6962 |
cc |
and,use |
R4347 |
T6977 |
T6962 |
conj |
encode,use |
R4348 |
T6978 |
T6979 |
amod |
disrupted,receptors |
R4349 |
T6979 |
T6977 |
dobj |
receptors,encode |
R4350 |
T6980 |
T6979 |
amod |
olfactory,receptors |
R4351 |
T6981 |
T6982 |
punct |
(,Figure |
R4352 |
T6982 |
T6977 |
parataxis |
Figure,encode |
R4353 |
T6983 |
T6982 |
nummod |
6,Figure |
R4354 |
T6984 |
T6982 |
punct |
),Figure |
R4355 |
T6985 |
T6962 |
punct |
.,use |
R4356 |
T6987 |
T6988 |
prep |
In,spliced |
R4357 |
T6989 |
T6990 |
det |
the,cDNA |
R4358 |
T6990 |
T6987 |
pobj |
cDNA,In |
R4359 |
T6991 |
T6990 |
amod |
sixth,cDNA |
R4360 |
T6992 |
T6988 |
punct |
", ",spliced |
R4361 |
T6993 |
T6994 |
det |
a,intron |
R4362 |
T6994 |
T6988 |
nsubjpass |
intron,spliced |
R4363 |
T6995 |
T6996 |
nummod |
2.6,kb |
R4364 |
T6996 |
T6994 |
compound |
kb,intron |
R4365 |
T6997 |
T6996 |
punct |
-,kb |
R4366 |
T6998 |
T6988 |
auxpass |
is,spliced |
R4367 |
T6999 |
T6988 |
prep |
out,spliced |
R4368 |
T7000 |
T6999 |
prep |
of,out |
R4369 |
T7001 |
T7002 |
det |
the,UTR |
R4370 |
T7002 |
T7000 |
pobj |
UTR,of |
R4371 |
T7003 |
T7002 |
nummod |
3,UTR |
R4372 |
T7004 |
T7003 |
punct |
',3 |
R4373 |
T7005 |
T6988 |
punct |
", ",spliced |
R4374 |
T7006 |
T6988 |
advcl |
leaving,spliced |
R4375 |
T7007 |
T7008 |
det |
the,region |
R4376 |
T7008 |
T7006 |
dobj |
region,leaving |
R4377 |
T7009 |
T7008 |
amod |
coding,region |
R4378 |
T7010 |
T7006 |
oprd |
intact,leaving |
R4379 |
T7011 |
T6988 |
punct |
.,spliced |
R4380 |
T7013 |
T7014 |
mark |
If,achieved |
R4381 |
T7014 |
T7020 |
advcl |
achieved,derive |
R4382 |
T7015 |
T7016 |
amod |
olfactory,receptor |
R4383 |
T7016 |
T7017 |
nmod |
receptor,control |
R4384 |
T7017 |
T7014 |
nsubjpass |
control,achieved |
R4385 |
T7018 |
T7017 |
amod |
transcriptional,control |
R4386 |
T7019 |
T7014 |
auxpass |
is,achieved |
R4387 |
T7021 |
T7014 |
prep |
by,achieved |
R4388 |
T7022 |
T7023 |
compound |
DNA,recombination |
R4389 |
T7023 |
T7021 |
pobj |
recombination,by |
R4390 |
T7024 |
T7020 |
punct |
", ",derive |
R4391 |
T7025 |
T7026 |
det |
the,beginning |
R4392 |
T7026 |
T7020 |
nsubj |
beginning,derive |
R4393 |
T7027 |
T7026 |
prep |
of,beginning |
R4394 |
T7028 |
T7029 |
det |
each,transcript |
R4395 |
T7029 |
T7027 |
pobj |
transcript,of |
R4396 |
T7030 |
T7020 |
aux |
might,derive |
R4397 |
T7031 |
T7020 |
prep |
from,derive |
R4398 |
T7032 |
T7033 |
det |
a,region |
R4399 |
T7033 |
T7031 |
pobj |
region,from |
R4400 |
T7034 |
T7033 |
amod |
donated,region |
R4401 |
T7035 |
T7033 |
compound |
promoter,region |
R4402 |
T7036 |
T7020 |
punct |
", ",derive |
R4403 |
T7037 |
T7020 |
prep |
with,derive |
R4404 |
T7038 |
T7039 |
det |
the,rest |
R4405 |
T7039 |
T7040 |
nsubj |
rest,coming |
R4406 |
T7040 |
T7037 |
pcomp |
coming,with |
R4407 |
T7041 |
T7039 |
prep |
of,rest |
R4408 |
T7042 |
T7043 |
det |
the,transcript |
R4409 |
T7043 |
T7041 |
pobj |
transcript,of |
R4410 |
T7044 |
T7040 |
prep |
from,coming |
R4411 |
T7045 |
T7046 |
det |
the,locus |
R4412 |
T7046 |
T7044 |
pobj |
locus,from |
R4413 |
T7047 |
T7046 |
amod |
native,locus |
R4414 |
T7048 |
T7049 |
npadvmod |
ORF,containing |
R4415 |
T7049 |
T7046 |
amod |
containing,locus |
R4416 |
T7050 |
T7049 |
punct |
-,containing |
R4417 |
T7051 |
T7020 |
punct |
.,derive |
R4418 |
T7053 |
T7054 |
prep |
In,analyzed |
R4419 |
T7055 |
T7053 |
pobj |
order,In |
R4420 |
T7056 |
T7057 |
aux |
to,examine |
R4421 |
T7057 |
T7055 |
acl |
examine,order |
R4422 |
T7058 |
T7059 |
det |
the,hypothesis |
R4423 |
T7059 |
T7057 |
dobj |
hypothesis,examine |
R4424 |
T7060 |
T7059 |
compound |
recombination,hypothesis |
R4425 |
T7061 |
T7054 |
punct |
", ",analyzed |
R4426 |
T7062 |
T7054 |
nsubj |
we,analyzed |
R4427 |
T7063 |
T7064 |
nummod |
115,clones |
R4428 |
T7064 |
T7054 |
dobj |
clones,analyzed |
R4429 |
T7065 |
T7064 |
compound |
cDNA,clones |
R4430 |
T7066 |
T7067 |
prep |
for,failed |
R4431 |
T7067 |
T7064 |
relcl |
failed,clones |
R4432 |
T7068 |
T7066 |
pobj |
which,for |
R4433 |
T7069 |
T7067 |
nsubj |
sim4,failed |
R4434 |
T7070 |
T7071 |
aux |
to,align |
R4435 |
T7071 |
T7067 |
xcomp |
align,failed |
R4436 |
T7072 |
T7073 |
nummod |
20,bp |
R4437 |
T7073 |
T7071 |
dobj |
bp,align |
R4438 |
T7074 |
T7075 |
cc |
or,more |
R4439 |
T7075 |
T7073 |
nummod |
more,bp |
R4440 |
T7076 |
T7071 |
prep |
to,align |
R4441 |
T7077 |
T7078 |
det |
the,locus |
R4442 |
T7078 |
T7076 |
pobj |
locus,to |
R4443 |
T7079 |
T7078 |
amod |
corresponding,locus |
R4444 |
T7080 |
T7078 |
amod |
genomic,locus |
R4445 |
T7081 |
T7054 |
punct |
.,analyzed |
R4446 |
T7083 |
T7084 |
prep |
In,explained |
R4447 |
T7085 |
T7086 |
amod |
most,cases |
R4448 |
T7086 |
T7083 |
pobj |
cases,In |
R4449 |
T7087 |
T7084 |
punct |
", ",explained |
R4450 |
T7088 |
T7089 |
det |
the,sequence |
R4451 |
T7089 |
T7084 |
nsubjpass |
sequence,explained |
R4452 |
T7090 |
T7089 |
amod |
missing,sequence |
R4453 |
T7091 |
T7084 |
auxpass |
was,explained |
R4454 |
T7092 |
T7084 |
prep |
by,explained |
R4455 |
T7093 |
T7092 |
pobj |
gaps,by |
R4456 |
T7094 |
T7093 |
prep |
in,gaps |
R4457 |
T7095 |
T7096 |
det |
the,sequence |
R4458 |
T7096 |
T7094 |
pobj |
sequence,in |
R4459 |
T7097 |
T7096 |
amod |
genomic,sequence |
R4460 |
T7098 |
T7092 |
cc |
or,by |
R4461 |
T7099 |
T7092 |
conj |
by,by |
R4462 |
T7100 |
T7099 |
pobj |
matches,by |
R4463 |
T7101 |
T7102 |
dep |
that,fell |
R4464 |
T7102 |
T7100 |
relcl |
fell,matches |
R4465 |
T7103 |
T7102 |
prep |
below,fell |
R4466 |
T7104 |
T7105 |
poss |
our,cutoff |
R4467 |
T7105 |
T7103 |
pobj |
cutoff,below |
R4468 |
T7106 |
T7107 |
compound |
percent,identity |
R4469 |
T7107 |
T7108 |
npadvmod |
identity,based |
R4470 |
T7108 |
T7105 |
amod |
based,cutoff |
R4471 |
T7109 |
T7108 |
punct |
-,based |
R4472 |
T7110 |
T7105 |
prep |
for,cutoff |
R4473 |
T7111 |
T7110 |
pcomp |
reporting,for |
R4474 |
T7112 |
T7111 |
dobj |
matches,reporting |
R4475 |
T7113 |
T7084 |
punct |
.,explained |
R4476 |
T7115 |
T7116 |
prep |
For,found |
R4477 |
T7117 |
T7118 |
nummod |
three,cDNAs |
R4478 |
T7118 |
T7115 |
pobj |
cDNAs,For |
R4479 |
T7119 |
T7118 |
punct |
(,cDNAs |
R4480 |
T7120 |
T7118 |
prep |
from,cDNAs |
R4481 |
T7121 |
T7122 |
nummod |
three,receptors |
R4482 |
T7122 |
T7120 |
pobj |
receptors,from |
R4483 |
T7123 |
T7122 |
amod |
different,receptors |
R4484 |
T7124 |
T7122 |
amod |
olfactory,receptors |
R4485 |
T7125 |
T7116 |
punct |
),found |
R4486 |
T7126 |
T7116 |
punct |
", ",found |
R4487 |
T7127 |
T7116 |
nsubj |
we,found |
R4488 |
T7128 |
T7129 |
mark |
that,matched |
R4489 |
T7129 |
T7116 |
ccomp |
matched,found |
R4490 |
T7130 |
T7131 |
det |
the,piece |
R4491 |
T7131 |
T7129 |
nsubj |
piece,matched |
R4492 |
T7132 |
T7131 |
amod |
missing,piece |
R4493 |
T7133 |
T7131 |
prep |
of,piece |
R4494 |
T7134 |
T7133 |
pobj |
sequence,of |
R4495 |
T7135 |
T7129 |
advmod |
elsewhere,matched |
R4496 |
T7136 |
T7135 |
prep |
in,elsewhere |
R4497 |
T7137 |
T7138 |
det |
the,genome |
R4498 |
T7138 |
T7136 |
pobj |
genome,in |
R4499 |
T7139 |
T7116 |
punct |
.,found |
R4500 |
T7141 |
T7142 |
nsubj |
Comparison,confirmed |
R4501 |
T7143 |
T7141 |
prep |
with,Comparison |
R4502 |
T7144 |
T7145 |
det |
the,assembly |
R4503 |
T7145 |
T7143 |
pobj |
assembly,with |
R4504 |
T7146 |
T7145 |
amod |
public,assembly |
R4505 |
T7147 |
T7148 |
compound |
mouse,genome |
R4506 |
T7148 |
T7145 |
compound |
genome,assembly |
R4507 |
T7149 |
T7150 |
det |
the,matches |
R4508 |
T7150 |
T7142 |
dobj |
matches,confirmed |
R4509 |
T7151 |
T7150 |
amod |
distant,matches |
R4510 |
T7152 |
T7142 |
punct |
.,confirmed |
R4511 |
T7154 |
T7155 |
prep |
With,conclude |
R4512 |
T7156 |
T7157 |
predet |
such,number |
R4513 |
T7157 |
T7160 |
nsubj |
number,exhibiting |
R4514 |
T7158 |
T7157 |
det |
a,number |
R4515 |
T7159 |
T7157 |
amod |
small,number |
R4516 |
T7160 |
T7154 |
pcomp |
exhibiting,With |
R4517 |
T7161 |
T7157 |
prep |
of,number |
R4518 |
T7162 |
T7161 |
pobj |
cDNAs,of |
R4519 |
T7163 |
T7164 |
det |
a,sign |
R4520 |
T7164 |
T7160 |
dobj |
sign,exhibiting |
R4521 |
T7165 |
T7164 |
amod |
possible,sign |
R4522 |
T7166 |
T7164 |
prep |
of,sign |
R4523 |
T7167 |
T7168 |
compound |
DNA,recombination |
R4524 |
T7168 |
T7166 |
pobj |
recombination,of |
R4525 |
T7169 |
T7164 |
punct |
(,sign |
R4526 |
T7170 |
T7171 |
det |
a,sign |
R4527 |
T7171 |
T7164 |
appos |
sign,sign |
R4528 |
T7172 |
T7173 |
dep |
that,interpreted |
R4529 |
T7173 |
T7171 |
relcl |
interpreted,sign |
R4530 |
T7174 |
T7173 |
aux |
could,interpreted |
R4531 |
T7175 |
T7173 |
advmod |
also,interpreted |
R4532 |
T7176 |
T7173 |
auxpass |
be,interpreted |
R4533 |
T7177 |
T7173 |
prep |
as,interpreted |
R4534 |
T7178 |
T7179 |
amod |
chimeric,clones |
R4535 |
T7179 |
T7177 |
pobj |
clones,as |
R4536 |
T7180 |
T7179 |
compound |
cDNA,clones |
R4537 |
T7181 |
T7155 |
punct |
),conclude |
R4538 |
T7182 |
T7155 |
punct |
", ",conclude |
R4539 |
T7183 |
T7155 |
nsubj |
we,conclude |
R4540 |
T7184 |
T7185 |
mark |
that,is |
R4541 |
T7185 |
T7155 |
ccomp |
is,conclude |
R4542 |
T7186 |
T7187 |
amod |
such,rearrangement |
R4543 |
T7187 |
T7185 |
nsubj |
rearrangement,is |
R4544 |
T7188 |
T7185 |
acomp |
unlikely,is |
R4545 |
T7189 |
T7190 |
aux |
to,occur |
R4546 |
T7190 |
T7188 |
xcomp |
occur,unlikely |
R4547 |
T7191 |
T7155 |
punct |
.,conclude |
R4548 |
T7193 |
T7194 |
advmod |
However,remains |
R4549 |
T7195 |
T7194 |
punct |
", ",remains |
R4550 |
T7196 |
T7197 |
det |
the,possibility |
R4551 |
T7197 |
T7194 |
nsubj |
possibility,remains |
R4552 |
T7198 |
T7199 |
mark |
that,is |
R4553 |
T7199 |
T7194 |
ccomp |
is,remains |
R4554 |
T7200 |
T7201 |
compound |
DNA,recombination |
R4555 |
T7201 |
T7199 |
nsubj |
recombination,is |
R4556 |
T7202 |
T7199 |
acomp |
responsible,is |
R4557 |
T7203 |
T7202 |
prep |
for,responsible |
R4558 |
T7204 |
T7205 |
amod |
olfactory,receptor |
R4559 |
T7205 |
T7206 |
nmod |
receptor,regulation |
R4560 |
T7206 |
T7203 |
pobj |
regulation,for |
R4561 |
T7207 |
T7206 |
amod |
transcriptional,regulation |
R4562 |
T7208 |
T7199 |
punct |
", ",is |
R4563 |
T7209 |
T7199 |
prep |
with,is |
R4564 |
T7210 |
T7211 |
det |
the,region |
R4565 |
T7211 |
T7213 |
nsubj |
region,contributing |
R4566 |
T7212 |
T7211 |
amod |
donated,region |
R4567 |
T7213 |
T7209 |
pcomp |
contributing,with |
R4568 |
T7214 |
T7215 |
advmod |
only,sequences |
R4569 |
T7215 |
T7213 |
dobj |
sequences,contributing |
R4570 |
T7216 |
T7215 |
compound |
promoter,sequences |
R4571 |
T7217 |
T7215 |
cc |
but,sequences |
R4572 |
T7218 |
T7219 |
det |
no,part |
R4573 |
T7219 |
T7215 |
conj |
part,sequences |
R4574 |
T7220 |
T7219 |
prep |
of,part |
R4575 |
T7221 |
T7222 |
det |
the,transcript |
R4576 |
T7222 |
T7220 |
pobj |
transcript,of |
R4577 |
T7223 |
T7194 |
punct |
.,remains |
R4578 |
T7399 |
T7400 |
preconj |
Both,receptors |
R4579 |
T7400 |
T7403 |
nsubjpass |
receptors,expressed |
R4580 |
T7401 |
T7400 |
amod |
unclustered,receptors |
R4581 |
T7402 |
T7400 |
amod |
olfactory,receptors |
R4582 |
T7404 |
T7400 |
cc |
and,receptors |
R4583 |
T7405 |
T7406 |
amod |
olfactory,receptor |
R4584 |
T7406 |
T7407 |
compound |
receptor,pseudogenes |
R4585 |
T7407 |
T7400 |
conj |
pseudogenes,receptors |
R4586 |
T7408 |
T7403 |
aux |
can,expressed |
R4587 |
T7409 |
T7403 |
auxpass |
be,expressed |
R4588 |
T7411 |
T7412 |
nsubj |
We,were |
R4589 |
T7413 |
T7412 |
acomp |
interested,were |
R4590 |
T7414 |
T7413 |
prep |
in,interested |
R4591 |
T7415 |
T7416 |
mark |
whether,need |
R4592 |
T7416 |
T7414 |
pobj |
need,in |
R4593 |
T7417 |
T7418 |
amod |
olfactory,receptors |
R4594 |
T7418 |
T7416 |
nsubj |
receptors,need |
R4595 |
T7419 |
T7420 |
aux |
to,be |
R4596 |
T7420 |
T7416 |
xcomp |
be,need |
R4597 |
T7421 |
T7420 |
attr |
part,be |
R4598 |
T7422 |
T7421 |
prep |
of,part |
R4599 |
T7423 |
T7424 |
det |
a,cluster |
R4600 |
T7424 |
T7422 |
pobj |
cluster,of |
R4601 |
T7425 |
T7424 |
prep |
in,cluster |
R4602 |
T7426 |
T7427 |
det |
the,genome |
R4603 |
T7427 |
T7425 |
pobj |
genome,in |
R4604 |
T7428 |
T7420 |
prep |
in,be |
R4605 |
T7429 |
T7428 |
pobj |
order,in |
R4606 |
T7430 |
T7431 |
aux |
to,transcribed |
R4607 |
T7431 |
T7429 |
acl |
transcribed,order |
R4608 |
T7432 |
T7431 |
auxpass |
be,transcribed |
R4609 |
T7433 |
T7416 |
punct |
", ",need |
R4610 |
T7434 |
T7416 |
cc |
or,need |
R4611 |
T7435 |
T7436 |
mark |
if,is |
R4612 |
T7436 |
T7416 |
conj |
is,need |
R4613 |
T7437 |
T7438 |
det |
the,organization |
R4614 |
T7438 |
T7436 |
nsubj |
organization,is |
R4615 |
T7439 |
T7438 |
amod |
clustered,organization |
R4616 |
T7440 |
T7438 |
amod |
genomic,organization |
R4617 |
T7441 |
T7438 |
prep |
of,organization |
R4618 |
T7442 |
T7443 |
amod |
olfactory,receptors |
R4619 |
T7443 |
T7441 |
pobj |
receptors,of |
R4620 |
T7444 |
T7436 |
advmod |
simply,is |
R4621 |
T7445 |
T7446 |
det |
a,consequence |
R4622 |
T7446 |
T7436 |
attr |
consequence,is |
R4623 |
T7447 |
T7446 |
prep |
of,consequence |
R4624 |
T7448 |
T7449 |
det |
the,fact |
R4625 |
T7449 |
T7447 |
pobj |
fact,of |
R4626 |
T7450 |
T7451 |
mark |
that,is |
R4627 |
T7451 |
T7449 |
acl |
is,fact |
R4628 |
T7452 |
T7453 |
amod |
local,duplication |
R4629 |
T7453 |
T7451 |
nsubj |
duplication,is |
R4630 |
T7454 |
T7455 |
det |
the,mechanism |
R4631 |
T7455 |
T7451 |
attr |
mechanism,is |
R4632 |
T7456 |
T7455 |
amod |
major,mechanism |
R4633 |
T7457 |
T7455 |
prep |
for,mechanism |
R4634 |
T7458 |
T7457 |
pcomp |
expanding,for |
R4635 |
T7459 |
T7460 |
det |
the,family |
R4636 |
T7460 |
T7458 |
dobj |
family,expanding |
R4637 |
T7461 |
T7460 |
compound |
gene,family |
R4638 |
T7462 |
T7463 |
punct |
[,1 |
R4639 |
T7463 |
T7412 |
parataxis |
1,were |
R4640 |
T7464 |
T7463 |
punct |
],1 |
R4641 |
T7465 |
T7412 |
punct |
.,were |
R4642 |
T7467 |
T7468 |
punct |
',are |
R4643 |
T7469 |
T7470 |
nmod |
Singleton,receptors |
R4644 |
T7470 |
T7468 |
nsubj |
receptors,are |
R4645 |
T7471 |
T7470 |
punct |
',receptors |
R4646 |
T7472 |
T7470 |
amod |
olfactory,receptors |
R4647 |
T7473 |
T7470 |
punct |
(,receptors |
R4648 |
T7474 |
T7470 |
acl |
defined,receptors |
R4649 |
T7475 |
T7474 |
prep |
as,defined |
R4650 |
T7476 |
T7477 |
amod |
full,length |
R4651 |
T7477 |
T7479 |
nmod |
length,receptors |
R4652 |
T7478 |
T7477 |
punct |
-,length |
R4653 |
T7479 |
T7475 |
pobj |
receptors,as |
R4654 |
T7480 |
T7479 |
amod |
olfactory,receptors |
R4655 |
T7481 |
T7479 |
prep |
without,receptors |
R4656 |
T7482 |
T7483 |
det |
another,receptor |
R4657 |
T7483 |
T7481 |
pobj |
receptor,without |
R4658 |
T7484 |
T7483 |
amod |
olfactory,receptor |
R4659 |
T7485 |
T7483 |
prep |
within,receptor |
R4660 |
T7486 |
T7487 |
nummod |
0.5,Mb |
R4661 |
T7487 |
T7485 |
pobj |
Mb,within |
R4662 |
T7488 |
T7468 |
punct |
),are |
R4663 |
T7489 |
T7490 |
advmod |
more,often |
R4664 |
T7490 |
T7468 |
advmod |
often,are |
R4665 |
T7491 |
T7468 |
attr |
pseudogenes,are |
R4666 |
T7492 |
T7493 |
mark |
than,are |
R4667 |
T7493 |
T7468 |
advcl |
are,are |
R4668 |
T7494 |
T7495 |
amod |
olfactory,receptors |
R4669 |
T7495 |
T7493 |
nsubj |
receptors,are |
R4670 |
T7496 |
T7495 |
prep |
in,receptors |
R4671 |
T7497 |
T7496 |
pobj |
clusters,in |
R4672 |
T7498 |
T7499 |
punct |
(,16 |
R4673 |
T7499 |
T7493 |
parataxis |
16,are |
R4674 |
T7500 |
T7499 |
quantmod |
8,16 |
R4675 |
T7501 |
T7499 |
quantmod |
out,16 |
R4676 |
T7502 |
T7499 |
quantmod |
of,16 |
R4677 |
T7503 |
T7499 |
cc |
versus,16 |
R4678 |
T7504 |
T7505 |
quantmod |
271,"1,358" |
R4679 |
T7505 |
T7499 |
conj |
"1,358",16 |
R4680 |
T7506 |
T7505 |
quantmod |
out,"1,358" |
R4681 |
T7507 |
T7505 |
quantmod |
of,"1,358" |
R4682 |
T7508 |
T7499 |
punct |
;,16 |
R4683 |
T7509 |
T7510 |
nsubj |
χ2,8.8 |
R4684 |
T7510 |
T7499 |
ccomp |
8.8,16 |
R4685 |
T7511 |
T7510 |
punct |
=,8.8 |
R4686 |
T7512 |
T7499 |
punct |
", ",16 |
R4687 |
T7513 |
T7514 |
nsubj |
P,0.005 |
R4688 |
T7514 |
T7499 |
ccomp |
0.005,16 |
R4689 |
T7515 |
T7514 |
punct |
<,0.005 |
R4690 |
T7516 |
T7499 |
punct |
),16 |
R4691 |
T7517 |
T7468 |
punct |
.,are |
R4692 |
T7519 |
T7520 |
prep |
Of,have |
R4693 |
T7521 |
T7522 |
det |
the,receptors |
R4694 |
T7522 |
T7519 |
pobj |
receptors,Of |
R4695 |
T7523 |
T7522 |
nummod |
eight,receptors |
R4696 |
T7524 |
T7522 |
amod |
intact,receptors |
R4697 |
T7525 |
T7522 |
nmod |
singleton,receptors |
R4698 |
T7526 |
T7522 |
amod |
olfactory,receptors |
R4699 |
T7527 |
T7520 |
punct |
", ",have |
R4700 |
T7528 |
T7520 |
nsubj |
two,have |
R4701 |
T7529 |
T7530 |
amod |
matching,cDNAs |
R4702 |
T7530 |
T7520 |
dobj |
cDNAs,have |
R4703 |
T7531 |
T7520 |
prep |
in,have |
R4704 |
T7532 |
T7533 |
poss |
our,collection |
R4705 |
T7533 |
T7531 |
pobj |
collection,in |
R4706 |
T7534 |
T7520 |
punct |
", ",have |
R4707 |
T7535 |
T7536 |
det |
a,proportion |
R4708 |
T7536 |
T7520 |
npadvmod |
proportion,have |
R4709 |
T7537 |
T7536 |
amod |
similar,proportion |
R4710 |
T7538 |
T7539 |
mark |
as,found |
R4711 |
T7539 |
T7536 |
advcl |
found,proportion |
R4712 |
T7540 |
T7539 |
prep |
for,found |
R4713 |
T7541 |
T7542 |
amod |
olfactory,receptors |
R4714 |
T7542 |
T7540 |
pobj |
receptors,for |
R4715 |
T7543 |
T7542 |
prep |
in,receptors |
R4716 |
T7544 |
T7543 |
pobj |
clusters,in |
R4717 |
T7545 |
T7520 |
punct |
", ",have |
R4718 |
T7546 |
T7520 |
advcl |
showing,have |
R4719 |
T7547 |
T7548 |
mark |
that,is |
R4720 |
T7548 |
T7546 |
ccomp |
is,showing |
R4721 |
T7549 |
T7548 |
nsubj |
clustering,is |
R4722 |
T7550 |
T7548 |
neg |
not,is |
R4723 |
T7551 |
T7552 |
det |
an,requirement |
R4724 |
T7552 |
T7548 |
attr |
requirement,is |
R4725 |
T7553 |
T7552 |
amod |
absolute,requirement |
R4726 |
T7554 |
T7552 |
prep |
for,requirement |
R4727 |
T7555 |
T7556 |
amod |
olfactory,receptor |
R4728 |
T7556 |
T7557 |
compound |
receptor,expression |
R4729 |
T7557 |
T7554 |
pobj |
expression,for |
R4730 |
T7558 |
T7520 |
punct |
.,have |
R4731 |
T7560 |
T7561 |
advmod |
However,are |
R4732 |
T7562 |
T7561 |
punct |
", ",are |
R4733 |
T7563 |
T7564 |
nsubj |
it,is |
R4734 |
T7564 |
T7561 |
ccomp |
is,are |
R4735 |
T7565 |
T7564 |
acomp |
possible,is |
R4736 |
T7566 |
T7567 |
det |
these,genes |
R4737 |
T7567 |
T7571 |
nsubj |
genes,are |
R4738 |
T7568 |
T7567 |
nummod |
two,genes |
R4739 |
T7569 |
T7567 |
amod |
expressed,genes |
R4740 |
T7570 |
T7567 |
compound |
singleton,genes |
R4741 |
T7571 |
T7564 |
advcl |
are,is |
R4742 |
T7572 |
T7571 |
attr |
part,are |
R4743 |
T7573 |
T7572 |
prep |
of,part |
R4744 |
T7574 |
T7573 |
punct |
',of |
R4745 |
T7575 |
T7576 |
amod |
extended,clusters |
R4746 |
T7576 |
T7573 |
pobj |
clusters,of |
R4747 |
T7577 |
T7576 |
punct |
',clusters |
R4748 |
T7578 |
T7579 |
amod |
olfactory,receptor |
R4749 |
T7579 |
T7576 |
compound |
receptor,clusters |
R4750 |
T7580 |
T7561 |
punct |
-,are |
R4751 |
T7581 |
T7582 |
poss |
their,neighbors |
R4752 |
T7582 |
T7561 |
nsubj |
neighbors,are |
R4753 |
T7583 |
T7582 |
amod |
nearest,neighbors |
R4754 |
T7584 |
T7585 |
amod |
olfactory,receptor |
R4755 |
T7585 |
T7582 |
compound |
receptor,neighbors |
R4756 |
T7586 |
T7587 |
nummod |
1.7,Mb |
R4757 |
T7587 |
T7588 |
npadvmod |
Mb,away |
R4758 |
T7588 |
T7561 |
advmod |
away,are |
R4759 |
T7589 |
T7587 |
cc |
and,Mb |
R4760 |
T7590 |
T7591 |
nummod |
2.6,Mb |
R4761 |
T7591 |
T7587 |
conj |
Mb,Mb |
R4762 |
T7592 |
T7561 |
punct |
", ",are |
R4763 |
T7593 |
T7561 |
advmod |
respectively,are |
R4764 |
T7594 |
T7561 |
punct |
.,are |
R4765 |
T7596 |
T7597 |
nsubj |
We,find |
R4766 |
T7598 |
T7597 |
advmod |
also,find |
R4767 |
T7599 |
T7600 |
mark |
that,expressed |
R4768 |
T7600 |
T7597 |
ccomp |
expressed,find |
R4769 |
T7601 |
T7602 |
det |
some,pseudogenes |
R4770 |
T7602 |
T7600 |
nsubjpass |
pseudogenes,expressed |
R4771 |
T7603 |
T7604 |
amod |
olfactory,receptor |
R4772 |
T7604 |
T7602 |
compound |
receptor,pseudogenes |
R4773 |
T7605 |
T7600 |
auxpass |
are,expressed |
R4774 |
T7606 |
T7600 |
punct |
", ",expressed |
R4775 |
T7607 |
T7600 |
prep |
albeit,expressed |
R4776 |
T7608 |
T7607 |
prep |
with,albeit |
R4777 |
T7609 |
T7610 |
det |
a,probability |
R4778 |
T7610 |
T7608 |
pobj |
probability,with |
R4779 |
T7611 |
T7610 |
amod |
lower,probability |
R4780 |
T7612 |
T7610 |
prep |
than,probability |
R4781 |
T7613 |
T7614 |
amod |
intact,receptors |
R4782 |
T7614 |
T7612 |
pobj |
receptors,than |
R4783 |
T7615 |
T7614 |
amod |
olfactory,receptors |
R4784 |
T7616 |
T7597 |
punct |
.,find |
R4785 |
T7618 |
T7619 |
advcl |
Considering,represented |
R4786 |
T7620 |
T7621 |
det |
the,sequences |
R4787 |
T7621 |
T7618 |
dobj |
sequences,Considering |
R4788 |
T7622 |
T7621 |
nummod |
"1,392",sequences |
R4789 |
T7623 |
T7624 |
amod |
olfactory,receptor |
R4790 |
T7624 |
T7621 |
compound |
receptor,sequences |
R4791 |
T7625 |
T7621 |
compound |
gene,sequences |
R4792 |
T7626 |
T7627 |
prep |
for,are |
R4793 |
T7627 |
T7621 |
relcl |
are,sequences |
R4794 |
T7628 |
T7626 |
pobj |
which,for |
R4795 |
T7629 |
T7630 |
amod |
reliable,data |
R4796 |
T7630 |
T7627 |
nsubj |
data,are |
R4797 |
T7631 |
T7632 |
amod |
full,length |
R4798 |
T7632 |
T7630 |
amod |
length,data |
R4799 |
T7633 |
T7632 |
punct |
-,length |
R4800 |
T7634 |
T7627 |
acomp |
available,are |
R4801 |
T7635 |
T7619 |
punct |
", ",represented |
R4802 |
T7636 |
T7637 |
quantmod |
15,285 |
R4803 |
T7637 |
T7640 |
nummod |
285,pseudogenes |
R4804 |
T7638 |
T7637 |
quantmod |
out,285 |
R4805 |
T7639 |
T7637 |
quantmod |
of,285 |
R4806 |
T7640 |
T7619 |
nsubjpass |
pseudogenes,represented |
R4807 |
T7641 |
T7642 |
punct |
(,% |
R4808 |
T7642 |
T7637 |
parataxis |
%,285 |
R4809 |
T7643 |
T7642 |
nummod |
5,% |
R4810 |
T7644 |
T7642 |
punct |
),% |
R4811 |
T7645 |
T7640 |
amod |
apparent,pseudogenes |
R4812 |
T7646 |
T7619 |
auxpass |
are,represented |
R4813 |
T7647 |
T7619 |
prep |
in,represented |
R4814 |
T7648 |
T7649 |
poss |
our,collection |
R4815 |
T7649 |
T7647 |
pobj |
collection,in |
R4816 |
T7650 |
T7649 |
compound |
cDNA,collection |
R4817 |
T7651 |
T7619 |
punct |
", ",represented |
R4818 |
T7652 |
T7619 |
prep |
compared,represented |
R4819 |
T7653 |
T7652 |
prep |
to,compared |
R4820 |
T7654 |
T7655 |
quantmod |
393,"1,107" |
R4821 |
T7655 |
T7658 |
nummod |
"1,107",receptors |
R4822 |
T7656 |
T7655 |
quantmod |
out,"1,107" |
R4823 |
T7657 |
T7655 |
quantmod |
of,"1,107" |
R4824 |
T7658 |
T7653 |
pobj |
receptors,to |
R4825 |
T7659 |
T7660 |
punct |
(,% |
R4826 |
T7660 |
T7655 |
parataxis |
%,"1,107" |
R4827 |
T7661 |
T7660 |
nummod |
36,% |
R4828 |
T7662 |
T7660 |
punct |
),% |
R4829 |
T7663 |
T7658 |
amod |
intact,receptors |
R4830 |
T7664 |
T7658 |
amod |
olfactory,receptors |
R4831 |
T7665 |
T7619 |
punct |
.,represented |
R4832 |
T7667 |
T7668 |
advmod |
However,are |
R4833 |
T7669 |
T7668 |
punct |
", ",are |
R4834 |
T7670 |
T7671 |
quantmod |
three,15 |
R4835 |
T7671 |
T7674 |
nummod |
15,pseudogenes |
R4836 |
T7672 |
T7671 |
quantmod |
of,15 |
R4837 |
T7673 |
T7671 |
quantmod |
these,15 |
R4838 |
T7674 |
T7668 |
nsubj |
pseudogenes,are |
R4839 |
T7675 |
T7674 |
punct |
',pseudogenes |
R4840 |
T7676 |
T7674 |
amod |
expressed,pseudogenes |
R4841 |
T7677 |
T7668 |
punct |
',are |
R4842 |
T7678 |
T7679 |
amod |
intact,genes |
R4843 |
T7679 |
T7668 |
attr |
genes,are |
R4844 |
T7680 |
T7668 |
prep |
in,are |
R4845 |
T7681 |
T7682 |
det |
the,sequence |
R4846 |
T7682 |
T7680 |
pobj |
sequence,in |
R4847 |
T7683 |
T7682 |
amod |
public,sequence |
R4848 |
T7684 |
T7685 |
compound |
mouse,genome |
R4849 |
T7685 |
T7682 |
compound |
genome,sequence |
R4850 |
T7686 |
T7668 |
punct |
.,are |
R4851 |
T7688 |
T7689 |
det |
The,defects |
R4852 |
T7689 |
T7690 |
nsubj |
defects,be |
R4853 |
T7691 |
T7689 |
prep |
in,defects |
R4854 |
T7692 |
T7693 |
poss |
Celera,version |
R4855 |
T7693 |
T7691 |
pobj |
version,in |
R4856 |
T7694 |
T7692 |
case |
's,Celera |
R4857 |
T7695 |
T7693 |
prep |
of,version |
R4858 |
T7696 |
T7697 |
det |
these,genes |
R4859 |
T7697 |
T7695 |
pobj |
genes,of |
R4860 |
T7698 |
T7690 |
aux |
may,be |
R4861 |
T7699 |
T7690 |
prep |
due,be |
R4862 |
T7700 |
T7699 |
pcomp |
to,due |
R4863 |
T7701 |
T7702 |
amod |
sequencing,errors |
R4864 |
T7702 |
T7699 |
pobj |
errors,due |
R4865 |
T7703 |
T7702 |
cc |
or,errors |
R4866 |
T7704 |
T7705 |
amod |
true,polymorphism |
R4867 |
T7705 |
T7702 |
conj |
polymorphism,errors |
R4868 |
T7706 |
T7690 |
punct |
.,be |
R4869 |
T7708 |
T7709 |
advmod |
Publicly,available |
R4870 |
T7709 |
T7710 |
amod |
available,sequence |
R4871 |
T7710 |
T7712 |
nsubj |
sequence,confirms |
R4872 |
T7711 |
T7710 |
compound |
mouse,sequence |
R4873 |
T7713 |
T7714 |
mark |
that,are |
R4874 |
T7714 |
T7712 |
ccomp |
are,confirms |
R4875 |
T7715 |
T7716 |
quantmod |
11,12 |
R4876 |
T7716 |
T7719 |
nummod |
12,pseudogenes |
R4877 |
T7717 |
T7716 |
quantmod |
of,12 |
R4878 |
T7718 |
T7716 |
quantmod |
the,12 |
R4879 |
T7719 |
T7714 |
nsubj |
pseudogenes,are |
R4880 |
T7720 |
T7719 |
amod |
remaining,pseudogenes |
R4881 |
T7721 |
T7719 |
amod |
expressed,pseudogenes |
R4882 |
T7722 |
T7714 |
advmod |
indeed,are |
R4883 |
T7723 |
T7714 |
attr |
pseudogenes,are |
R4884 |
T7724 |
T7712 |
punct |
.,confirms |
R4885 |
T7726 |
T7727 |
det |
No,sequence |
R4886 |
T7727 |
T7729 |
nsubj |
sequence,matches |
R4887 |
T7728 |
T7727 |
amod |
public,sequence |
R4888 |
T7730 |
T7731 |
det |
the,pseudogene |
R4889 |
T7731 |
T7729 |
dobj |
pseudogene,matches |
R4890 |
T7732 |
T7731 |
amod |
12th,pseudogene |
R4891 |
T7733 |
T7731 |
punct |
',pseudogene |
R4892 |
T7734 |
T7731 |
amod |
expressed,pseudogene |
R4893 |
T7735 |
T7729 |
punct |
',matches |
R4894 |
T7736 |
T7729 |
prep |
with,matches |
R4895 |
T7737 |
T7738 |
nummod |
99,% |
R4896 |
T7738 |
T7739 |
compound |
%,identity |
R4897 |
T7739 |
T7736 |
pobj |
identity,with |
R4898 |
T7740 |
T7739 |
cc |
or,identity |
R4899 |
T7741 |
T7739 |
conj |
more,identity |
R4900 |
T7742 |
T7729 |
punct |
.,matches |
R4906 |
T8686 |
T8687 |
nsubj |
We,identified |
R4907 |
T8688 |
T8687 |
aux |
have,identified |
R4908 |
T8689 |
T8687 |
cc |
and,identified |
R4909 |
T8690 |
T8687 |
conj |
sequenced,identified |
R4910 |
T8691 |
T8692 |
nummod |
"1,264",cDNAs |
R4911 |
T8692 |
T8690 |
dobj |
cDNAs,sequenced |
R4912 |
T8693 |
T8694 |
amod |
odorant,receptor |
R4913 |
T8694 |
T8692 |
compound |
receptor,cDNAs |
R4914 |
T8695 |
T8690 |
prep |
from,sequenced |
R4915 |
T8696 |
T8697 |
nummod |
419,genes |
R4916 |
T8697 |
T8695 |
pobj |
genes,from |
R4917 |
T8698 |
T8699 |
amod |
olfactory,receptor |
R4918 |
T8699 |
T8697 |
compound |
receptor,genes |
R4919 |
T8700 |
T8690 |
punct |
", ",sequenced |
R4920 |
T8701 |
T8690 |
conj |
confirming,sequenced |
R4921 |
T8702 |
T8703 |
poss |
their,expression |
R4922 |
T8703 |
T8701 |
dobj |
expression,confirming |
R4923 |
T8704 |
T8701 |
prep |
in,confirming |
R4924 |
T8705 |
T8706 |
det |
the,epithelium |
R4925 |
T8706 |
T8704 |
pobj |
epithelium,in |
R4926 |
T8707 |
T8706 |
amod |
olfactory,epithelium |
R4927 |
T8708 |
T8687 |
punct |
.,identified |
R4928 |
T8710 |
T8711 |
nsubj |
We,validated |
R4929 |
T8712 |
T8711 |
aux |
have,validated |
R4930 |
T8713 |
T8711 |
advmod |
thus,validated |
R4931 |
T8714 |
T8715 |
det |
the,prediction |
R4932 |
T8715 |
T8711 |
dobj |
prediction,validated |
R4933 |
T8716 |
T8717 |
npadvmod |
similarity,based |
R4934 |
T8717 |
T8715 |
amod |
based,prediction |
R4935 |
T8718 |
T8717 |
punct |
-,based |
R4936 |
T8719 |
T8715 |
prep |
of,prediction |
R4937 |
T8720 |
T8721 |
quantmod |
over,one |
R4938 |
T8721 |
T8719 |
pobj |
one,of |
R4939 |
T8722 |
T8721 |
punct |
-,one |
R4940 |
T8723 |
T8721 |
amod |
third,one |
R4941 |
T8724 |
T8721 |
prep |
of,one |
R4942 |
T8725 |
T8726 |
det |
the,genes |
R4943 |
T8726 |
T8724 |
pobj |
genes,of |
R4944 |
T8727 |
T8726 |
amod |
intact,genes |
R4945 |
T8728 |
T8729 |
amod |
olfactory,receptor |
R4946 |
T8729 |
T8726 |
compound |
receptor,genes |
R4947 |
T8730 |
T8726 |
acl |
annotated,genes |
R4948 |
T8731 |
T8730 |
prep |
in,annotated |
R4949 |
T8732 |
T8733 |
det |
the,genome |
R4950 |
T8733 |
T8731 |
pobj |
genome,in |
R4951 |
T8734 |
T8733 |
compound |
mouse,genome |
R4952 |
T8735 |
T8736 |
punct |
[,2 |
R4953 |
T8736 |
T8715 |
parataxis |
2,prediction |
R4954 |
T8737 |
T8736 |
nummod |
1,2 |
R4955 |
T8738 |
T8736 |
punct |
",",2 |
R4956 |
T8739 |
T8736 |
punct |
],2 |
R4957 |
T8740 |
T8711 |
punct |
", ",validated |
R4958 |
T8741 |
T8742 |
advmod |
thereby,increasing |
R4959 |
T8742 |
T8711 |
advcl |
increasing,validated |
R4960 |
T8743 |
T8742 |
advmod |
vastly,increasing |
R4961 |
T8744 |
T8745 |
det |
the,proportion |
R4962 |
T8745 |
T8742 |
dobj |
proportion,increasing |
R4963 |
T8746 |
T8745 |
prep |
of,proportion |
R4964 |
T8747 |
T8748 |
det |
the,family |
R4965 |
T8748 |
T8746 |
pobj |
family,of |
R4966 |
T8749 |
T8750 |
prep |
for,is |
R4967 |
T8750 |
T8748 |
relcl |
is,family |
R4968 |
T8751 |
T8749 |
pobj |
which,for |
R4969 |
T8752 |
T8753 |
amod |
experimental,evidence |
R4970 |
T8753 |
T8750 |
nsubj |
evidence,is |
R4971 |
T8754 |
T8753 |
prep |
of,evidence |
R4972 |
T8755 |
T8756 |
amod |
olfactory,function |
R4973 |
T8756 |
T8754 |
pobj |
function,of |
R4974 |
T8757 |
T8750 |
acomp |
available,is |
R4975 |
T8758 |
T8711 |
punct |
.,validated |
R4976 |
T8760 |
T8761 |
nsubj |
We,found |
R4977 |
T8762 |
T8761 |
aux |
have,found |
R4978 |
T8763 |
T8761 |
neg |
not,found |
R4979 |
T8764 |
T8761 |
dobj |
cDNAs,found |
R4980 |
T8765 |
T8764 |
prep |
for,cDNAs |
R4981 |
T8766 |
T8767 |
det |
all,genes |
R4982 |
T8767 |
T8765 |
pobj |
genes,for |
R4983 |
T8768 |
T8769 |
amod |
olfactory,receptor |
R4984 |
T8769 |
T8767 |
compound |
receptor,genes |
R4985 |
T8770 |
T8764 |
cc |
or,cDNAs |
R4986 |
T8771 |
T8772 |
det |
an,distribution |
R4987 |
T8772 |
T8764 |
conj |
distribution,cDNAs |
R4988 |
T8773 |
T8772 |
advmod |
even,distribution |
R4989 |
T8774 |
T8772 |
amod |
phylogenetic,distribution |
R4990 |
T8775 |
T8772 |
prep |
of,distribution |
R4991 |
T8776 |
T8775 |
pobj |
cDNAs,of |
R4992 |
T8777 |
T8761 |
punct |
", ",found |
R4993 |
T8778 |
T8779 |
advmod |
probably,are |
R4994 |
T8779 |
T8761 |
advcl |
are,found |
R4995 |
T8780 |
T8779 |
mark |
because,are |
R4996 |
T8781 |
T8782 |
det |
the,libraries |
R4997 |
T8782 |
T8779 |
nsubj |
libraries,are |
R4998 |
T8783 |
T8782 |
cc |
and,libraries |
R4999 |
T8784 |
T8783 |
punct |
/,and |
R5000 |
T8785 |
T8783 |
cc |
or,and |
R5001 |
T8786 |
T8787 |
poss |
our,screen |
R5002 |
T8787 |
T8782 |
conj |
screen,libraries |
R5003 |
T8788 |
T8779 |
acomp |
biased,are |
R5004 |
T8789 |
T8788 |
prep |
toward,biased |
R5005 |
T8790 |
T8791 |
amod |
certain,subfamilies |
R5006 |
T8791 |
T8789 |
pobj |
subfamilies,toward |
R5007 |
T8792 |
T8793 |
amod |
olfactory,receptor |
R5008 |
T8793 |
T8791 |
compound |
receptor,subfamilies |
R5009 |
T8794 |
T8761 |
punct |
.,found |
R5010 |
T8796 |
T8797 |
advcl |
Using,confirmed |
R5011 |
T8798 |
T8799 |
compound |
RT,PCR |
R5012 |
T8799 |
T8796 |
dobj |
PCR,Using |
R5013 |
T8800 |
T8799 |
punct |
-,PCR |
R5014 |
T8801 |
T8796 |
prep |
with,Using |
R5015 |
T8802 |
T8803 |
preconj |
both,degenerate |
R5016 |
T8803 |
T8804 |
amod |
degenerate,primers |
R5017 |
T8804 |
T8801 |
pobj |
primers,with |
R5018 |
T8805 |
T8803 |
cc |
and,degenerate |
R5019 |
T8806 |
T8803 |
conj |
specific,degenerate |
R5020 |
T8807 |
T8797 |
punct |
", ",confirmed |
R5021 |
T8808 |
T8797 |
nsubj |
we,confirmed |
R5022 |
T8809 |
T8797 |
aux |
have,confirmed |
R5023 |
T8810 |
T8811 |
amod |
olfactory,expression |
R5024 |
T8811 |
T8797 |
dobj |
expression,confirmed |
R5025 |
T8812 |
T8811 |
prep |
of,expression |
R5026 |
T8813 |
T8814 |
det |
a,number |
R5027 |
T8814 |
T8812 |
pobj |
number,of |
R5028 |
T8815 |
T8814 |
prep |
of,number |
R5029 |
T8816 |
T8817 |
amod |
additional,receptors |
R5030 |
T8817 |
T8815 |
pobj |
receptors,of |
R5031 |
T8818 |
T8817 |
amod |
olfactory,receptors |
R5032 |
T8819 |
T8797 |
punct |
", ",confirmed |
R5033 |
T8820 |
T8797 |
advcl |
bringing,confirmed |
R5034 |
T8821 |
T8822 |
det |
the,number |
R5035 |
T8822 |
T8820 |
dobj |
number,bringing |
R5036 |
T8823 |
T8822 |
amod |
total,number |
R5037 |
T8824 |
T8822 |
prep |
of,number |
R5038 |
T8825 |
T8826 |
amod |
olfactory,receptor |
R5039 |
T8826 |
T8827 |
compound |
receptor,genes |
R5040 |
T8827 |
T8824 |
pobj |
genes,of |
R5041 |
T8828 |
T8827 |
acl |
verified,genes |
R5042 |
T8829 |
T8828 |
prep |
in,verified |
R5043 |
T8830 |
T8831 |
det |
this,study |
R5044 |
T8831 |
T8829 |
pobj |
study,in |
R5045 |
T8832 |
T8820 |
prep |
to,bringing |
R5046 |
T8833 |
T8832 |
pobj |
436,to |
R5047 |
T8834 |
T8820 |
punct |
", ",bringing |
R5048 |
T8835 |
T8820 |
cc |
and,bringing |
R5049 |
T8836 |
T8820 |
conj |
ensuring,bringing |
R5050 |
T8837 |
T8838 |
mark |
that,have |
R5051 |
T8838 |
T8836 |
ccomp |
have,ensuring |
R5052 |
T8839 |
T8840 |
advmod |
almost,clades |
R5053 |
T8840 |
T8838 |
nsubj |
clades,have |
R5054 |
T8841 |
T8840 |
det |
all,clades |
R5055 |
T8842 |
T8840 |
amod |
phylogenetic,clades |
R5056 |
T8843 |
T8844 |
advmod |
at,one |
R5057 |
T8844 |
T8846 |
nummod |
one,representative |
R5058 |
T8845 |
T8844 |
advmod |
least,one |
R5059 |
T8846 |
T8838 |
dobj |
representative,have |
R5060 |
T8847 |
T8846 |
prep |
with,representative |
R5061 |
T8848 |
T8847 |
pobj |
evidence,with |
R5062 |
T8849 |
T8848 |
prep |
of,evidence |
R5063 |
T8850 |
T8851 |
amod |
olfactory,function |
R5064 |
T8851 |
T8849 |
pobj |
function,of |
R5065 |
T8852 |
T8797 |
punct |
.,confirmed |
R5066 |
T8854 |
T8855 |
nsubj |
Results,suggested |
R5067 |
T8856 |
T8854 |
prep |
of,Results |
R5068 |
T8857 |
T8858 |
poss |
our,screen |
R5069 |
T8858 |
T8856 |
pobj |
screen,of |
R5070 |
T8859 |
T8858 |
compound |
cDNA,screen |
R5071 |
T8860 |
T8858 |
compound |
library,screen |
R5072 |
T8861 |
T8862 |
mark |
that,expressed |
R5073 |
T8862 |
T8855 |
ccomp |
expressed,suggested |
R5074 |
T8863 |
T8864 |
det |
some,receptors |
R5075 |
T8864 |
T8862 |
nsubjpass |
receptors,expressed |
R5076 |
T8865 |
T8864 |
amod |
olfactory,receptors |
R5077 |
T8866 |
T8862 |
auxpass |
are,expressed |
R5078 |
T8867 |
T8862 |
prep |
at,expressed |
R5079 |
T8868 |
T8869 |
advmod |
significantly,higher |
R5080 |
T8869 |
T8870 |
amod |
higher,levels |
R5081 |
T8870 |
T8867 |
pobj |
levels,at |
R5082 |
T8871 |
T8870 |
prep |
than,levels |
R5083 |
T8872 |
T8871 |
pobj |
others,than |
R5084 |
T8873 |
T8855 |
punct |
.,suggested |
R5085 |
T8875 |
T8876 |
nsubj |
We,used |
R5086 |
T8877 |
T8878 |
amod |
quantitative,PCR |
R5087 |
T8878 |
T8876 |
dobj |
PCR,used |
R5088 |
T8879 |
T8880 |
aux |
to,show |
R5089 |
T8880 |
T8876 |
advcl |
show,used |
R5090 |
T8881 |
T8882 |
mark |
that,are |
R5091 |
T8882 |
T8880 |
ccomp |
are,show |
R5092 |
T8883 |
T8884 |
compound |
expression,levels |
R5093 |
T8884 |
T8882 |
nsubj |
levels,are |
R5094 |
T8885 |
T8882 |
advmod |
indeed,are |
R5095 |
T8886 |
T8887 |
advmod |
highly,variable |
R5096 |
T8887 |
T8882 |
acomp |
variable,are |
R5097 |
T8888 |
T8882 |
punct |
", ",are |
R5098 |
T8889 |
T8890 |
mark |
with,expressed |
R5099 |
T8890 |
T8882 |
advcl |
expressed,are |
R5100 |
T8891 |
T8892 |
nummod |
one,receptor |
R5101 |
T8892 |
T8890 |
nsubj |
receptor,expressed |
R5102 |
T8893 |
T8892 |
amod |
olfactory,receptor |
R5103 |
T8894 |
T8890 |
prep |
at,expressed |
R5104 |
T8895 |
T8896 |
advmod |
almost,300 |
R5105 |
T8896 |
T8897 |
nummod |
300,level |
R5106 |
T8897 |
T8894 |
pobj |
level,at |
R5107 |
T8898 |
T8896 |
quantmod |
times,300 |
R5108 |
T8899 |
T8897 |
det |
the,level |
R5109 |
T8900 |
T8897 |
prep |
of,level |
R5110 |
T8901 |
T8900 |
pobj |
another,of |
R5111 |
T8902 |
T8876 |
punct |
.,used |
R5112 |
T8904 |
T8905 |
amod |
Higher,levels |
R5113 |
T8905 |
T8907 |
nsubj |
levels,be |
R5114 |
T8906 |
T8905 |
compound |
expression,levels |
R5115 |
T8908 |
T8907 |
aux |
could,be |
R5116 |
T8909 |
T8907 |
prep |
due,be |
R5117 |
T8910 |
T8909 |
pcomp |
to,due |
R5118 |
T8911 |
T8912 |
amod |
increased,number |
R5119 |
T8912 |
T8909 |
pobj |
number,due |
R5120 |
T8913 |
T8912 |
compound |
transcript,number |
R5121 |
T8914 |
T8912 |
prep |
per,number |
R5122 |
T8915 |
T8914 |
pobj |
cell,per |
R5123 |
T8916 |
T8912 |
cc |
and,number |
R5124 |
T8917 |
T8916 |
punct |
/,and |
R5125 |
T8918 |
T8916 |
cc |
or,and |
R5126 |
T8919 |
T8920 |
det |
a,number |
R5127 |
T8920 |
T8922 |
nsubj |
number,choosing |
R5128 |
T8921 |
T8920 |
amod |
greater,number |
R5129 |
T8922 |
T8912 |
conj |
choosing,number |
R5130 |
T8923 |
T8920 |
prep |
of,number |
R5131 |
T8924 |
T8925 |
amod |
olfactory,neurons |
R5132 |
T8925 |
T8923 |
pobj |
neurons,of |
R5133 |
T8926 |
T8922 |
punct |
',choosing |
R5134 |
T8927 |
T8922 |
punct |
',choosing |
R5135 |
T8928 |
T8929 |
det |
those,genes |
R5136 |
T8929 |
T8922 |
dobj |
genes,choosing |
R5137 |
T8930 |
T8907 |
punct |
.,be |
R5138 |
T8932 |
T8933 |
prep |
For,appear |
R5139 |
T8934 |
T8935 |
nummod |
one,pair |
R5140 |
T8935 |
T8932 |
pobj |
pair,For |
R5141 |
T8936 |
T8935 |
prep |
of,pair |
R5142 |
T8937 |
T8936 |
pobj |
genes,of |
R5143 |
T8938 |
T8939 |
nsubj |
we,tested |
R5144 |
T8939 |
T8937 |
advcl |
tested,genes |
R5145 |
T8940 |
T8933 |
punct |
", ",appear |
R5146 |
T8941 |
T8942 |
compound |
expression,level |
R5147 |
T8942 |
T8943 |
compound |
level,differences |
R5148 |
T8943 |
T8933 |
nsubj |
differences,appear |
R5149 |
T8944 |
T8945 |
aux |
to,be |
R5150 |
T8945 |
T8933 |
xcomp |
be,appear |
R5151 |
T8946 |
T8945 |
prep |
due,be |
R5152 |
T8947 |
T8946 |
pcomp |
to,due |
R5153 |
T8948 |
T8949 |
det |
both,factors |
R5154 |
T8949 |
T8946 |
pobj |
factors,due |
R5155 |
T8950 |
T8933 |
punct |
.,appear |
R5156 |
T8952 |
T8953 |
nsubj |
It,be |
R5157 |
T8954 |
T8953 |
aux |
would,be |
R5158 |
T8955 |
T8953 |
acomp |
interesting,be |
R5159 |
T8956 |
T8957 |
aux |
to,collect |
R5160 |
T8957 |
T8953 |
xcomp |
collect,be |
R5161 |
T8958 |
T8957 |
dobj |
data,collect |
R5162 |
T8959 |
T8957 |
prep |
for,collect |
R5163 |
T8960 |
T8961 |
amod |
additional,genes |
R5164 |
T8961 |
T8959 |
pobj |
genes,for |
R5165 |
T8962 |
T8963 |
aux |
to,determine |
R5166 |
T8963 |
T8957 |
advcl |
determine,collect |
R5167 |
T8964 |
T8965 |
advmod |
how,vary |
R5168 |
T8965 |
T8963 |
ccomp |
vary,determine |
R5169 |
T8966 |
T8967 |
det |
the,numbers |
R5170 |
T8967 |
T8965 |
nsubj |
numbers,vary |
R5171 |
T8968 |
T8967 |
prep |
of,numbers |
R5172 |
T8969 |
T8970 |
amod |
expressing,cells |
R5173 |
T8970 |
T8968 |
pobj |
cells,of |
R5174 |
T8971 |
T8967 |
cc |
and,numbers |
R5175 |
T8972 |
T8973 |
compound |
transcript,levels |
R5176 |
T8973 |
T8967 |
conj |
levels,numbers |
R5177 |
T8974 |
T8973 |
prep |
per,levels |
R5178 |
T8975 |
T8974 |
pobj |
cell,per |
R5179 |
T8976 |
T8965 |
prep |
across,vary |
R5180 |
T8977 |
T8978 |
det |
the,family |
R5181 |
T8978 |
T8976 |
pobj |
family,across |
R5182 |
T8979 |
T8980 |
amod |
olfactory,receptor |
R5183 |
T8980 |
T8978 |
compound |
receptor,family |
R5184 |
T8981 |
T8953 |
punct |
.,be |
R5185 |
T8983 |
T8984 |
nsubj |
Data,show |
R5186 |
T8985 |
T8983 |
prep |
from,Data |
R5187 |
T8986 |
T8987 |
det |
a,number |
R5188 |
T8987 |
T8985 |
pobj |
number,from |
R5189 |
T8988 |
T8987 |
prep |
of,number |
R5190 |
T8989 |
T8990 |
amod |
previous,studies |
R5191 |
T8990 |
T8988 |
pobj |
studies,of |
R5192 |
T8991 |
T8984 |
advmod |
also,show |
R5193 |
T8992 |
T8993 |
mark |
that,expressed |
R5194 |
T8993 |
T8984 |
ccomp |
expressed,show |
R5195 |
T8994 |
T8995 |
amod |
different,genes |
R5196 |
T8995 |
T8993 |
nsubjpass |
genes,expressed |
R5197 |
T8996 |
T8997 |
amod |
olfactory,receptor |
R5198 |
T8997 |
T8995 |
compound |
receptor,genes |
R5199 |
T8998 |
T8995 |
punct |
", ",genes |
R5200 |
T8999 |
T8995 |
cc |
or,genes |
R5201 |
T9000 |
T9001 |
advmod |
even,copies |
R5202 |
T9001 |
T8995 |
conj |
copies,genes |
R5203 |
T9002 |
T9001 |
prep |
of,copies |
R5204 |
T9003 |
T9004 |
det |
the,transgene |
R5205 |
T9004 |
T9002 |
pobj |
transgene,of |
R5206 |
T9005 |
T9004 |
amod |
same,transgene |
R5207 |
T9006 |
T9007 |
amod |
olfactory,receptor |
R5208 |
T9007 |
T9004 |
compound |
receptor,transgene |
R5209 |
T9008 |
T9001 |
prep |
in,copies |
R5210 |
T9009 |
T9010 |
amod |
different,locations |
R5211 |
T9010 |
T9008 |
pobj |
locations,in |
R5212 |
T9011 |
T9010 |
amod |
genomic,locations |
R5213 |
T9012 |
T8993 |
auxpass |
are,expressed |
R5214 |
T9013 |
T8993 |
prep |
in,expressed |
R5215 |
T9014 |
T9015 |
amod |
different,numbers |
R5216 |
T9015 |
T9013 |
pobj |
numbers,in |
R5217 |
T9016 |
T9015 |
prep |
of,numbers |
R5218 |
T9017 |
T9016 |
pobj |
cells,of |
R5219 |
T9018 |
T9019 |
punct |
[,35 |
R5220 |
T9019 |
T8993 |
parataxis |
35,expressed |
R5221 |
T9020 |
T9019 |
nummod |
14,35 |
R5222 |
T9021 |
T9019 |
punct |
",",35 |
R5223 |
T9022 |
T9019 |
nummod |
18,35 |
R5224 |
T9023 |
T9019 |
punct |
",",35 |
R5225 |
T9024 |
T9019 |
punct |
],35 |
R5226 |
T9025 |
T8993 |
punct |
", ",expressed |
R5227 |
T9026 |
T8993 |
cc |
but,expressed |
R5228 |
T9027 |
T9028 |
aux |
do,address |
R5229 |
T9028 |
T8993 |
conj |
address,expressed |
R5230 |
T9029 |
T9028 |
neg |
not,address |
R5231 |
T9030 |
T9031 |
det |
the,issue |
R5232 |
T9031 |
T9028 |
dobj |
issue,address |
R5233 |
T9032 |
T9031 |
prep |
of,issue |
R5234 |
T9033 |
T9034 |
compound |
transcript,level |
R5235 |
T9034 |
T9032 |
pobj |
level,of |
R5236 |
T9035 |
T9034 |
prep |
per,level |
R5237 |
T9036 |
T9035 |
pobj |
cell,per |
R5238 |
T9037 |
T8984 |
punct |
.,show |
R5239 |
T9039 |
T9040 |
det |
The,fact |
R5240 |
T9040 |
T9041 |
nsubj |
fact,is |
R5241 |
T9042 |
T9043 |
mark |
that,chosen |
R5242 |
T9043 |
T9040 |
acl |
chosen,fact |
R5243 |
T9044 |
T9045 |
det |
some,genes |
R5244 |
T9045 |
T9043 |
nsubjpass |
genes,chosen |
R5245 |
T9046 |
T9043 |
auxpass |
are,chosen |
R5246 |
T9047 |
T9048 |
advmod |
more,frequently |
R5247 |
T9048 |
T9043 |
advmod |
frequently,chosen |
R5248 |
T9049 |
T9043 |
punct |
", ",chosen |
R5249 |
T9050 |
T9043 |
cc |
and,chosen |
R5250 |
T9051 |
T9052 |
advmod |
when,chosen |
R5251 |
T9052 |
T9053 |
advcl |
chosen,expressed |
R5252 |
T9053 |
T9043 |
conj |
expressed,chosen |
R5253 |
T9054 |
T9053 |
aux |
may,expressed |
R5254 |
T9055 |
T9053 |
auxpass |
be,expressed |
R5255 |
T9056 |
T9053 |
prep |
at,expressed |
R5256 |
T9057 |
T9058 |
amod |
higher,levels |
R5257 |
T9058 |
T9056 |
pobj |
levels,at |
R5258 |
T9059 |
T9058 |
prep |
per,levels |
R5259 |
T9060 |
T9059 |
pobj |
cell,per |
R5260 |
T9061 |
T9041 |
punct |
", ",is |
R5261 |
T9062 |
T9041 |
acomp |
intriguing,is |
R5262 |
T9063 |
T9041 |
prep |
given,is |
R5263 |
T9064 |
T9065 |
det |
each,neuron |
R5264 |
T9065 |
T9067 |
poss |
neuron,regime |
R5265 |
T9066 |
T9065 |
amod |
olfactory,neuron |
R5266 |
T9067 |
T9063 |
pobj |
regime,given |
R5267 |
T9068 |
T9065 |
case |
's,neuron |
R5268 |
T9069 |
T9070 |
amod |
single,allele |
R5269 |
T9070 |
T9067 |
compound |
allele,regime |
R5270 |
T9071 |
T9070 |
punct |
-,allele |
R5271 |
T9072 |
T9067 |
compound |
expression,regime |
R5272 |
T9073 |
T9041 |
punct |
.,is |
R5273 |
T9075 |
T9076 |
det |
The,observation |
R5274 |
T9076 |
T9077 |
nsubj |
observation,leads |
R5275 |
T9078 |
T9076 |
prep |
of,observation |
R5276 |
T9079 |
T9080 |
amod |
unequal,expression |
R5277 |
T9080 |
T9078 |
pobj |
expression,of |
R5278 |
T9081 |
T9077 |
prep |
to,leads |
R5279 |
T9082 |
T9083 |
det |
a,number |
R5280 |
T9083 |
T9081 |
pobj |
number,to |
R5281 |
T9084 |
T9083 |
prep |
of,number |
R5282 |
T9085 |
T9084 |
pobj |
questions,of |
R5283 |
T9086 |
T9077 |
punct |
.,leads |
R5284 |
T9088 |
T9089 |
nsubjpass |
It,known |
R5285 |
T9089 |
T9091 |
ccomp |
known,choose |
R5286 |
T9090 |
T9089 |
auxpass |
is,known |
R5287 |
T9092 |
T9093 |
mark |
that,expressed |
R5288 |
T9093 |
T9089 |
ccomp |
expressed,known |
R5289 |
T9094 |
T9095 |
det |
each,receptor |
R5290 |
T9095 |
T9093 |
nsubjpass |
receptor,expressed |
R5291 |
T9096 |
T9095 |
amod |
olfactory,receptor |
R5292 |
T9097 |
T9093 |
auxpass |
is,expressed |
R5293 |
T9098 |
T9093 |
prep |
in,expressed |
R5294 |
T9099 |
T9098 |
pobj |
one,in |
R5295 |
T9100 |
T9099 |
prep |
of,one |
R5296 |
T9101 |
T9102 |
nummod |
four,zones |
R5297 |
T9102 |
T9100 |
pobj |
zones,of |
R5298 |
T9103 |
T9102 |
prep |
of,zones |
R5299 |
T9104 |
T9105 |
det |
the,epithelium |
R5300 |
T9105 |
T9103 |
pobj |
epithelium,of |
R5301 |
T9106 |
T9105 |
amod |
olfactory,epithelium |
R5302 |
T9107 |
T9108 |
punct |
[,15 |
R5303 |
T9108 |
T9093 |
parataxis |
15,expressed |
R5304 |
T9109 |
T9108 |
nummod |
14,15 |
R5305 |
T9110 |
T9108 |
punct |
",",15 |
R5306 |
T9111 |
T9108 |
punct |
],15 |
R5307 |
T9112 |
T9091 |
punct |
;,choose |
R5308 |
T9113 |
T9091 |
aux |
do,choose |
R5309 |
T9114 |
T9115 |
det |
some,zones |
R5310 |
T9115 |
T9091 |
nsubj |
zones,choose |
R5311 |
T9116 |
T9091 |
prep |
from,choose |
R5312 |
T9117 |
T9118 |
det |
a,sub-repertoire |
R5313 |
T9118 |
T9116 |
pobj |
sub-repertoire,from |
R5314 |
T9119 |
T9118 |
amod |
smaller,sub-repertoire |
R5315 |
T9120 |
T9121 |
amod |
olfactory,receptor |
R5316 |
T9121 |
T9118 |
compound |
receptor,sub-repertoire |
R5317 |
T9122 |
T9091 |
cc |
and,choose |
R5318 |
T9123 |
T9124 |
advmod |
thus,express |
R5319 |
T9124 |
T9091 |
conj |
express,choose |
R5320 |
T9125 |
T9126 |
det |
each,receptor |
R5321 |
T9126 |
T9124 |
dobj |
receptor,express |
R5322 |
T9127 |
T9126 |
amod |
olfactory,receptor |
R5323 |
T9128 |
T9124 |
prep |
in,express |
R5324 |
T9129 |
T9130 |
det |
a,number |
R5325 |
T9130 |
T9128 |
pobj |
number,in |
R5326 |
T9131 |
T9130 |
amod |
larger,number |
R5327 |
T9132 |
T9130 |
prep |
of,number |
R5328 |
T9133 |
T9132 |
pobj |
cells,of |
R5329 |
T9134 |
T9091 |
punct |
?,choose |
R5330 |
T9136 |
T9137 |
nsubj |
We,note |
R5331 |
T9138 |
T9139 |
mark |
that,expressed |
R5332 |
T9139 |
T9137 |
ccomp |
expressed,note |
R5333 |
T9140 |
T9141 |
amod |
several,receptors |
R5334 |
T9141 |
T9139 |
nsubjpass |
receptors,expressed |
R5335 |
T9142 |
T9143 |
advmod |
apparently,expressed |
R5336 |
T9143 |
T9141 |
amod |
expressed,receptors |
R5337 |
T9144 |
T9143 |
advmod |
highly,expressed |
R5338 |
T9145 |
T9141 |
amod |
olfactory,receptors |
R5339 |
T9146 |
T9141 |
punct |
(,receptors |
R5340 |
T9147 |
T9148 |
compound |
gene,A |
R5341 |
T9148 |
T9141 |
appos |
A,receptors |
R5342 |
T9149 |
T9150 |
punct |
", ",study |
R5343 |
T9150 |
T9148 |
parataxis |
study,A |
R5344 |
T9151 |
T9150 |
det |
this,study |
R5345 |
T9152 |
T9150 |
punct |
", ",study |
R5346 |
T9153 |
T9148 |
cc |
and,A |
R5347 |
T9154 |
T9148 |
conj |
MOR10,A |
R5348 |
T9155 |
T9154 |
cc |
and,MOR10 |
R5349 |
T9156 |
T9154 |
conj |
MOR28,MOR10 |
R5350 |
T9157 |
T9158 |
punct |
[,36 |
R5351 |
T9158 |
T9156 |
parataxis |
36,MOR28 |
R5352 |
T9159 |
T9158 |
punct |
],36 |
R5353 |
T9160 |
T9141 |
punct |
),receptors |
R5354 |
T9161 |
T9139 |
auxpass |
are,expressed |
R5355 |
T9162 |
T9139 |
prep |
in,expressed |
R5356 |
T9163 |
T9162 |
pobj |
zone,in |
R5357 |
T9164 |
T9163 |
nummod |
4,zone |
R5358 |
T9165 |
T9163 |
prep |
of,zone |
R5359 |
T9166 |
T9167 |
det |
the,epithelium |
R5360 |
T9167 |
T9165 |
pobj |
epithelium,of |
R5361 |
T9168 |
T9167 |
amod |
olfactory,epithelium |
R5362 |
T9169 |
T9137 |
punct |
.,note |
R5363 |
T9171 |
T9172 |
aux |
Does,contribute |
R5364 |
T9173 |
T9174 |
npadvmod |
activity,dependent |
R5365 |
T9174 |
T9176 |
amod |
dependent,competition |
R5366 |
T9175 |
T9174 |
punct |
-,dependent |
R5367 |
T9176 |
T9172 |
nsubj |
competition,contribute |
R5368 |
T9177 |
T9176 |
amod |
neuronal,competition |
R5369 |
T9178 |
T9179 |
punct |
[,37 |
R5370 |
T9179 |
T9176 |
parataxis |
37,competition |
R5371 |
T9180 |
T9179 |
punct |
],37 |
R5372 |
T9181 |
T9172 |
prep |
to,contribute |
R5373 |
T9182 |
T9183 |
amod |
increased,representation |
R5374 |
T9183 |
T9181 |
pobj |
representation,to |
R5375 |
T9184 |
T9183 |
prep |
of,representation |
R5376 |
T9185 |
T9186 |
det |
the,receptors |
R5377 |
T9186 |
T9184 |
pobj |
receptors,of |
R5378 |
T9187 |
T9186 |
amod |
olfactory,receptors |
R5379 |
T9188 |
T9189 |
dep |
that,respond |
R5380 |
T9189 |
T9186 |
relcl |
respond,receptors |
R5381 |
T9190 |
T9189 |
prep |
to,respond |
R5382 |
T9191 |
T9192 |
amod |
common,odorants |
R5383 |
T9192 |
T9190 |
pobj |
odorants,to |
R5384 |
T9193 |
T9192 |
amod |
environmental,odorants |
R5385 |
T9194 |
T9172 |
punct |
?,contribute |
R5386 |
T9196 |
T9197 |
aux |
Do,have |
R5387 |
T9198 |
T9199 |
det |
the,receptors |
R5388 |
T9199 |
T9197 |
nsubj |
receptors,have |
R5389 |
T9200 |
T9199 |
amod |
favored,receptors |
R5390 |
T9201 |
T9199 |
amod |
olfactory,receptors |
R5391 |
T9202 |
T9203 |
amod |
stronger,sequences |
R5392 |
T9203 |
T9197 |
dobj |
sequences,have |
R5393 |
T9204 |
T9203 |
compound |
promoter,sequences |
R5394 |
T9205 |
T9197 |
punct |
?,have |
R5395 |
T9208 |
T9209 |
det |
some,mRNAs |
R5396 |
T9209 |
T9207 |
nsubj |
mRNAs,Are |
R5397 |
T9210 |
T9211 |
amod |
olfactory,receptor |
R5398 |
T9211 |
T9209 |
compound |
receptor,mRNAs |
R5399 |
T9212 |
T9213 |
advmod |
more,stable |
R5400 |
T9213 |
T9207 |
acomp |
stable,Are |
R5401 |
T9214 |
T9213 |
prep |
than,stable |
R5402 |
T9215 |
T9214 |
pobj |
others,than |
R5403 |
T9216 |
T9207 |
punct |
", ",Are |
R5404 |
T9217 |
T9207 |
advcl |
leading,Are |
R5405 |
T9218 |
T9217 |
prep |
to,leading |
R5406 |
T9219 |
T9220 |
amod |
higher,levels |
R5407 |
T9220 |
T9218 |
pobj |
levels,to |
R5408 |
T9221 |
T9220 |
compound |
transcript,levels |
R5409 |
T9222 |
T9220 |
prep |
per,levels |
R5410 |
T9223 |
T9224 |
amod |
expressing,cell |
R5411 |
T9224 |
T9222 |
pobj |
cell,per |
R5412 |
T9225 |
T9207 |
punct |
?,Are |
R5413 |
T9228 |
T9229 |
det |
the,receptors |
R5414 |
T9229 |
T9227 |
nsubj |
receptors,Are |
R5415 |
T9230 |
T9229 |
amod |
favored,receptors |
R5416 |
T9231 |
T9229 |
amod |
olfactory,receptors |
R5417 |
T9232 |
T9227 |
prep |
in,Are |
R5418 |
T9233 |
T9234 |
advmod |
more,open |
R5419 |
T9234 |
T9235 |
amod |
open,conformation |
R5420 |
T9235 |
T9232 |
pobj |
conformation,in |
R5421 |
T9236 |
T9235 |
compound |
chromatin,conformation |
R5422 |
T9237 |
T9235 |
cc |
or,conformation |
R5423 |
T9238 |
T9239 |
advmod |
more,accessible |
R5424 |
T9239 |
T9240 |
amod |
accessible,locations |
R5425 |
T9240 |
T9235 |
conj |
locations,conformation |
R5426 |
T9241 |
T9240 |
amod |
genomic,locations |
R5427 |
T9242 |
T9227 |
punct |
?,Are |
R5428 |
T9244 |
T9245 |
nsubj |
Transcription,suggests |
R5429 |
T9246 |
T9244 |
prep |
of,Transcription |
R5430 |
T9247 |
T9248 |
amod |
apparent,genes |
R5431 |
T9248 |
T9246 |
pobj |
genes,of |
R5432 |
T9249 |
T9248 |
punct |
',genes |
R5433 |
T9250 |
T9248 |
nmod |
singleton,genes |
R5434 |
T9251 |
T9248 |
punct |
',genes |
R5435 |
T9252 |
T9253 |
amod |
olfactory,receptor |
R5436 |
T9253 |
T9248 |
compound |
receptor,genes |
R5437 |
T9254 |
T9255 |
punct |
(,Mb |
R5438 |
T9255 |
T9244 |
parataxis |
Mb,Transcription |
R5439 |
T9256 |
T9255 |
nummod |
0.5,Mb |
R5440 |
T9257 |
T9258 |
cc |
or,more |
R5441 |
T9258 |
T9255 |
nummod |
more,Mb |
R5442 |
T9259 |
T9255 |
prep |
from,Mb |
R5443 |
T9260 |
T9261 |
det |
the,gene |
R5444 |
T9261 |
T9259 |
pobj |
gene,from |
R5445 |
T9262 |
T9261 |
amod |
nearest,gene |
R5446 |
T9263 |
T9261 |
amod |
other,gene |
R5447 |
T9264 |
T9265 |
amod |
olfactory,receptor |
R5448 |
T9265 |
T9261 |
compound |
receptor,gene |
R5449 |
T9266 |
T9255 |
punct |
),Mb |
R5450 |
T9267 |
T9268 |
mark |
that,is |
R5451 |
T9268 |
T9245 |
ccomp |
is,suggests |
R5452 |
T9269 |
T9268 |
expl |
there,is |
R5453 |
T9270 |
T9271 |
det |
no,requirement |
R5454 |
T9271 |
T9268 |
attr |
requirement,is |
R5455 |
T9272 |
T9271 |
amod |
absolute,requirement |
R5456 |
T9273 |
T9271 |
prep |
for,requirement |
R5457 |
T9274 |
T9275 |
amod |
genomic,clustering |
R5458 |
T9275 |
T9273 |
pobj |
clustering,for |
R5459 |
T9276 |
T9277 |
mark |
for,transcribed |
R5460 |
T9277 |
T9268 |
advcl |
transcribed,is |
R5461 |
T9278 |
T9279 |
det |
an,receptor |
R5462 |
T9279 |
T9277 |
nsubjpass |
receptor,transcribed |
R5463 |
T9280 |
T9279 |
amod |
olfactory,receptor |
R5464 |
T9281 |
T9277 |
aux |
to,transcribed |
R5465 |
T9282 |
T9277 |
auxpass |
be,transcribed |
R5466 |
T9283 |
T9268 |
punct |
", ",is |
R5467 |
T9284 |
T9268 |
advcl |
consistent,is |
R5468 |
T9285 |
T9284 |
prep |
with,consistent |
R5469 |
T9286 |
T9285 |
pobj |
observations,with |
R5470 |
T9287 |
T9288 |
mark |
that,expressed |
R5471 |
T9288 |
T9286 |
acl |
expressed,observations |
R5472 |
T9289 |
T9290 |
amod |
small,transgenes |
R5473 |
T9290 |
T9288 |
nsubjpass |
transgenes,expressed |
R5474 |
T9291 |
T9292 |
amod |
olfactory,receptor |
R5475 |
T9292 |
T9290 |
compound |
receptor,transgenes |
R5476 |
T9293 |
T9288 |
aux |
can,expressed |
R5477 |
T9294 |
T9288 |
auxpass |
be,expressed |
R5478 |
T9295 |
T9288 |
advmod |
correctly,expressed |
R5479 |
T9296 |
T9297 |
advmod |
when,integrated |
R5480 |
T9297 |
T9288 |
advcl |
integrated,expressed |
R5481 |
T9298 |
T9297 |
prep |
outside,integrated |
R5482 |
T9299 |
T9300 |
amod |
native,clusters |
R5483 |
T9300 |
T9298 |
pobj |
clusters,outside |
R5484 |
T9301 |
T9302 |
amod |
olfactory,receptor |
R5485 |
T9302 |
T9300 |
compound |
receptor,clusters |
R5486 |
T9303 |
T9304 |
punct |
[,35 |
R5487 |
T9304 |
T9245 |
parataxis |
35,suggests |
R5488 |
T9305 |
T9304 |
punct |
],35 |
R5489 |
T9306 |
T9245 |
punct |
.,suggests |
R5490 |
T9308 |
T9309 |
advmod |
However,suggests |
R5491 |
T9310 |
T9309 |
punct |
", ",suggests |
R5492 |
T9311 |
T9312 |
det |
the,count |
R5493 |
T9312 |
T9309 |
nsubj |
count,suggests |
R5494 |
T9313 |
T9312 |
amod |
high,count |
R5495 |
T9314 |
T9312 |
compound |
pseudogene,count |
R5496 |
T9315 |
T9312 |
prep |
among,count |
R5497 |
T9316 |
T9317 |
nmod |
singleton,genes |
R5498 |
T9317 |
T9315 |
pobj |
genes,among |
R5499 |
T9318 |
T9319 |
amod |
olfactory,receptor |
R5500 |
T9319 |
T9317 |
compound |
receptor,genes |
R5501 |
T9320 |
T9312 |
punct |
(,count |
R5502 |
T9321 |
T9322 |
nummod |
50,% |
R5503 |
T9322 |
T9312 |
appos |
%,count |
R5504 |
T9323 |
T9322 |
punct |
", ",% |
R5505 |
T9324 |
T9322 |
cc |
versus,% |
R5506 |
T9325 |
T9326 |
nummod |
20,% |
R5507 |
T9326 |
T9322 |
conj |
%,% |
R5508 |
T9327 |
T9326 |
prep |
for,% |
R5509 |
T9328 |
T9329 |
amod |
clustered,genes |
R5510 |
T9329 |
T9327 |
pobj |
genes,for |
R5511 |
T9330 |
T9331 |
amod |
olfactory,receptor |
R5512 |
T9331 |
T9329 |
compound |
receptor,genes |
R5513 |
T9332 |
T9312 |
punct |
),count |
R5514 |
T9333 |
T9334 |
mark |
that,are |
R5515 |
T9334 |
T9309 |
ccomp |
are,suggests |
R5516 |
T9335 |
T9336 |
neg |
not,locations |
R5517 |
T9336 |
T9334 |
nsubj |
locations,are |
R5518 |
T9337 |
T9336 |
det |
all,locations |
R5519 |
T9338 |
T9336 |
amod |
genomic,locations |
R5520 |
T9339 |
T9334 |
acomp |
favorable,are |
R5521 |
T9340 |
T9339 |
prep |
for,favorable |
R5522 |
T9341 |
T9342 |
amod |
olfactory,receptor |
R5523 |
T9342 |
T9343 |
compound |
receptor,survival |
R5524 |
T9343 |
T9340 |
pobj |
survival,for |
R5525 |
T9344 |
T9343 |
compound |
gene,survival |
R5526 |
T9345 |
T9334 |
punct |
", ",are |
R5527 |
T9346 |
T9347 |
advmod |
perhaps,due |
R5528 |
T9347 |
T9334 |
prep |
due,are |
R5529 |
T9348 |
T9347 |
pcomp |
to,due |
R5530 |
T9349 |
T9350 |
amod |
transcriptional,constraints |
R5531 |
T9350 |
T9347 |
pobj |
constraints,due |
R5532 |
T9351 |
T9309 |
punct |
.,suggests |
R5533 |
T9353 |
T9354 |
nsubj |
It,is |
R5534 |
T9354 |
T9355 |
ccomp |
is,rescue |
R5535 |
T9356 |
T9354 |
advmod |
also,is |
R5536 |
T9357 |
T9354 |
acomp |
possible,is |
R5537 |
T9358 |
T9359 |
mark |
that,be |
R5538 |
T9359 |
T9354 |
ccomp |
be,is |
R5539 |
T9360 |
T9361 |
amod |
evolutionary,factors |
R5540 |
T9361 |
T9359 |
nsubj |
factors,be |
R5541 |
T9362 |
T9359 |
aux |
may,be |
R5542 |
T9363 |
T9359 |
acomp |
responsible,be |
R5543 |
T9364 |
T9363 |
prep |
for,responsible |
R5544 |
T9365 |
T9366 |
amod |
reduced,content |
R5545 |
T9366 |
T9364 |
pobj |
content,for |
R5546 |
T9367 |
T9366 |
compound |
pseudogene,content |
R5547 |
T9368 |
T9366 |
prep |
of,content |
R5548 |
T9369 |
T9370 |
amod |
clustered,receptors |
R5549 |
T9370 |
T9368 |
pobj |
receptors,of |
R5550 |
T9371 |
T9370 |
amod |
olfactory,receptors |
R5551 |
T9372 |
T9355 |
punct |
-,rescue |
R5552 |
T9373 |
T9374 |
compound |
gene,conversion |
R5553 |
T9374 |
T9355 |
nsubj |
conversion,rescue |
R5554 |
T9375 |
T9374 |
prep |
between,conversion |
R5555 |
T9376 |
T9377 |
amod |
neighboring,receptors |
R5556 |
T9377 |
T9375 |
pobj |
receptors,between |
R5557 |
T9378 |
T9377 |
amod |
olfactory,receptors |
R5558 |
T9379 |
T9355 |
aux |
could,rescue |
R5559 |
T9380 |
T9381 |
amod |
inactivating,mutations |
R5560 |
T9381 |
T9355 |
dobj |
mutations,rescue |
R5561 |
T9382 |
T9381 |
prep |
in,mutations |
R5562 |
T9383 |
T9384 |
amod |
clustered,genes |
R5563 |
T9384 |
T9382 |
pobj |
genes,in |
R5564 |
T9385 |
T9381 |
punct |
", ",mutations |
R5565 |
T9386 |
T9381 |
cc |
but,mutations |
R5566 |
T9387 |
T9386 |
neg |
not,but |
R5567 |
T9388 |
T9381 |
conj |
singletons,mutations |
R5568 |
T9389 |
T9355 |
punct |
.,rescue |
R5569 |
T9391 |
T9392 |
mark |
Before,answered |
R5570 |
T9392 |
T9402 |
advcl |
answered,be |
R5571 |
T9393 |
T9394 |
det |
these,questions |
R5572 |
T9394 |
T9392 |
nsubjpass |
questions,answered |
R5573 |
T9395 |
T9394 |
prep |
about,questions |
R5574 |
T9396 |
T9397 |
amod |
olfactory,receptor |
R5575 |
T9397 |
T9398 |
compound |
receptor,gene |
R5576 |
T9398 |
T9399 |
compound |
gene,choice |
R5577 |
T9399 |
T9395 |
pobj |
choice,about |
R5578 |
T9400 |
T9392 |
aux |
can,answered |
R5579 |
T9401 |
T9392 |
auxpass |
be,answered |
R5580 |
T9403 |
T9402 |
punct |
", ",be |
R5581 |
T9404 |
T9402 |
nsubj |
it,be |
R5582 |
T9405 |
T9402 |
aux |
will,be |
R5583 |
T9406 |
T9402 |
acomp |
important,be |
R5584 |
T9407 |
T9408 |
aux |
to,measure |
R5585 |
T9408 |
T9402 |
xcomp |
measure,be |
R5586 |
T9409 |
T9410 |
compound |
expression,levels |
R5587 |
T9410 |
T9408 |
dobj |
levels,measure |
R5588 |
T9411 |
T9410 |
prep |
of,levels |
R5589 |
T9412 |
T9413 |
det |
a,number |
R5590 |
T9413 |
T9411 |
pobj |
number,of |
R5591 |
T9414 |
T9413 |
amod |
larger,number |
R5592 |
T9415 |
T9413 |
prep |
of,number |
R5593 |
T9416 |
T9415 |
pobj |
genes,of |
R5594 |
T9417 |
T9408 |
punct |
", ",measure |
R5595 |
T9418 |
T9419 |
advmod |
perhaps,using |
R5596 |
T9419 |
T9408 |
advcl |
using,measure |
R5597 |
T9420 |
T9421 |
det |
an,microarray |
R5598 |
T9421 |
T9419 |
dobj |
microarray,using |
R5599 |
T9422 |
T9423 |
amod |
olfactory,receptor |
R5600 |
T9423 |
T9424 |
compound |
receptor,gene |
R5601 |
T9424 |
T9421 |
compound |
gene,microarray |
R5602 |
T9425 |
T9402 |
punct |
.,be |
R5603 |
T9427 |
T9428 |
poss |
Our,study |
R5604 |
T9428 |
T9429 |
nsubj |
study,provides |
R5605 |
T9430 |
T9431 |
advmod |
at,least |
R5606 |
T9431 |
T9432 |
advmod |
least,partial |
R5607 |
T9432 |
T9433 |
amod |
partial,data |
R5608 |
T9433 |
T9429 |
dobj |
data,provides |
R5609 |
T9434 |
T9433 |
prep |
about,data |
R5610 |
T9435 |
T9436 |
det |
the,structures |
R5611 |
T9436 |
T9434 |
pobj |
structures,about |
R5612 |
T9437 |
T9436 |
amod |
upstream,structures |
R5613 |
T9438 |
T9436 |
compound |
transcript,structures |
R5614 |
T9439 |
T9436 |
prep |
of,structures |
R5615 |
T9440 |
T9441 |
quantmod |
over,300 |
R5616 |
T9441 |
T9442 |
nummod |
300,genes |
R5617 |
T9442 |
T9439 |
pobj |
genes,of |
R5618 |
T9443 |
T9444 |
amod |
olfactory,receptor |
R5619 |
T9444 |
T9442 |
compound |
receptor,genes |
R5620 |
T9445 |
T9429 |
punct |
.,provides |
R5621 |
T9447 |
T9448 |
det |
These,data |
R5622 |
T9448 |
T9449 |
nsubj |
data,provide |
R5623 |
T9450 |
T9451 |
amod |
tentative,locations |
R5624 |
T9451 |
T9449 |
dobj |
locations,provide |
R5625 |
T9452 |
T9451 |
prep |
of,locations |
R5626 |
T9453 |
T9454 |
det |
a,set |
R5627 |
T9454 |
T9452 |
pobj |
set,of |
R5628 |
T9455 |
T9454 |
amod |
large,set |
R5629 |
T9456 |
T9454 |
prep |
of,set |
R5630 |
T9457 |
T9458 |
compound |
promoter,regions |
R5631 |
T9458 |
T9456 |
pobj |
regions,of |
R5632 |
T9459 |
T9449 |
punct |
", ",provide |
R5633 |
T9460 |
T9449 |
advcl |
allowing,provide |
R5634 |
T9461 |
T9462 |
amod |
computational,searches |
R5635 |
T9462 |
T9460 |
dobj |
searches,allowing |
R5636 |
T9463 |
T9462 |
prep |
for,searches |
R5637 |
T9464 |
T9465 |
amod |
shared,motifs |
R5638 |
T9465 |
T9463 |
pobj |
motifs,for |
R5639 |
T9466 |
T9465 |
compound |
sequence,motifs |
R5640 |
T9467 |
T9468 |
dep |
that,involved |
R5641 |
T9468 |
T9465 |
relcl |
involved,motifs |
R5642 |
T9469 |
T9468 |
aux |
might,involved |
R5643 |
T9470 |
T9468 |
auxpass |
be,involved |
R5644 |
T9471 |
T9468 |
prep |
in,involved |
R5645 |
T9472 |
T9473 |
det |
the,regulation |
R5646 |
T9473 |
T9471 |
pobj |
regulation,in |
R5647 |
T9474 |
T9473 |
amod |
intriguing,regulation |
R5648 |
T9475 |
T9473 |
amod |
transcriptional,regulation |
R5649 |
T9476 |
T9473 |
prep |
of,regulation |
R5650 |
T9477 |
T9478 |
amod |
olfactory,receptors |
R5651 |
T9478 |
T9476 |
pobj |
receptors,of |
R5652 |
T9479 |
T9449 |
punct |
.,provide |
R5653 |
T9481 |
T9482 |
advmod |
However,be |
R5654 |
T9483 |
T9482 |
punct |
", ",be |
R5655 |
T9484 |
T9482 |
prep |
given,be |
R5656 |
T9485 |
T9486 |
mark |
that,are |
R5657 |
T9486 |
T9484 |
pcomp |
are,given |
R5658 |
T9487 |
T9488 |
neg |
not,cDNAs |
R5659 |
T9488 |
T9486 |
nsubj |
cDNAs,are |
R5660 |
T9489 |
T9488 |
det |
all,cDNAs |
R5661 |
T9490 |
T9491 |
amod |
full,length |
R5662 |
T9491 |
T9493 |
compound |
length,clones |
R5663 |
T9492 |
T9491 |
punct |
-,length |
R5664 |
T9493 |
T9486 |
attr |
clones,are |
R5665 |
T9494 |
T9482 |
punct |
", ",be |
R5666 |
T9495 |
T9482 |
nsubj |
some,be |
R5667 |
T9496 |
T9495 |
prep |
of,some |
R5668 |
T9497 |
T9498 |
det |
these,candidates |
R5669 |
T9498 |
T9496 |
pobj |
candidates,of |
R5670 |
T9499 |
T9482 |
aux |
will,be |
R5671 |
T9500 |
T9482 |
neg |
not,be |
R5672 |
T9501 |
T9502 |
amod |
true,regions |
R5673 |
T9502 |
T9482 |
attr |
regions,be |
R5674 |
T9503 |
T9502 |
compound |
promoter,regions |
R5675 |
T9504 |
T9482 |
punct |
.,be |
R5676 |
T9506 |
T9507 |
det |
The,sequences |
R5677 |
T9507 |
T9511 |
nsubj |
sequences,aid |
R5678 |
T9508 |
T9509 |
nummod |
5,UTR |
R5679 |
T9509 |
T9507 |
compound |
UTR,sequences |
R5680 |
T9510 |
T9508 |
punct |
',5 |
R5681 |
T9512 |
T9513 |
nsubj |
we,obtained |
R5682 |
T9513 |
T9507 |
advcl |
obtained,sequences |
R5683 |
T9514 |
T9511 |
aux |
will,aid |
R5684 |
T9515 |
T9511 |
advmod |
also,aid |
R5685 |
T9516 |
T9511 |
prep |
in,aid |
R5686 |
T9517 |
T9518 |
det |
the,design |
R5687 |
T9518 |
T9516 |
pobj |
design,in |
R5688 |
T9519 |
T9518 |
prep |
of,design |
R5689 |
T9520 |
T9521 |
amod |
experimental,probes |
R5690 |
T9521 |
T9519 |
pobj |
probes,of |
R5691 |
T9522 |
T9511 |
punct |
", ",aid |
R5692 |
T9523 |
T9511 |
prep |
for,aid |
R5693 |
T9524 |
T9523 |
pobj |
example,for |
R5694 |
T9525 |
T9523 |
punct |
", ",for |
R5695 |
T9526 |
T9523 |
conj |
for,for |
R5696 |
T9527 |
T9528 |
advmod |
in,situ |
R5697 |
T9528 |
T9529 |
amod |
situ,hybridizations |
R5698 |
T9529 |
T9526 |
pobj |
hybridizations,for |
R5699 |
T9530 |
T9526 |
cc |
or,for |
R5700 |
T9531 |
T9532 |
aux |
to,immobilize |
R5701 |
T9532 |
T9526 |
conj |
immobilize,for |
R5702 |
T9533 |
T9532 |
prep |
on,immobilize |
R5703 |
T9534 |
T9535 |
det |
an,microarray |
R5704 |
T9535 |
T9533 |
pobj |
microarray,on |
R5705 |
T9536 |
T9537 |
amod |
olfactory,receptor |
R5706 |
T9537 |
T9535 |
compound |
receptor,microarray |
R5707 |
T9538 |
T9511 |
punct |
.,aid |
R5708 |
T9540 |
T9541 |
nsubj |
One,be |
R5709 |
T9542 |
T9540 |
prep |
of,One |
R5710 |
T9543 |
T9544 |
det |
the,challenges |
R5711 |
T9544 |
T9542 |
pobj |
challenges,of |
R5712 |
T9545 |
T9544 |
prep |
of,challenges |
R5713 |
T9546 |
T9547 |
predet |
such,array |
R5714 |
T9547 |
T9545 |
pobj |
array,of |
R5715 |
T9548 |
T9547 |
det |
an,array |
R5716 |
T9549 |
T9541 |
aux |
will,be |
R5717 |
T9550 |
T9551 |
aux |
to,design |
R5718 |
T9551 |
T9541 |
xcomp |
design,be |
R5719 |
T9552 |
T9553 |
amod |
unique,probes |
R5720 |
T9553 |
T9551 |
dobj |
probes,design |
R5721 |
T9554 |
T9555 |
prep |
with,represent |
R5722 |
T9555 |
T9553 |
relcl |
represent,probes |
R5723 |
T9556 |
T9554 |
pobj |
which,with |
R5724 |
T9557 |
T9555 |
aux |
to,represent |
R5725 |
T9558 |
T9559 |
det |
each,gene |
R5726 |
T9559 |
T9555 |
dobj |
gene,represent |
R5727 |
T9560 |
T9541 |
punct |
.,be |
R5728 |
T9562 |
T9563 |
advmod |
Often,is |
R5729 |
T9564 |
T9563 |
punct |
", ",is |
R5730 |
T9565 |
T9566 |
det |
the,region |
R5731 |
T9566 |
T9563 |
nsubj |
region,is |
R5732 |
T9567 |
T9566 |
amod |
coding,region |
R5733 |
T9568 |
T9566 |
prep |
of,region |
R5734 |
T9569 |
T9570 |
amod |
olfactory,receptors |
R5735 |
T9570 |
T9568 |
pobj |
receptors,of |
R5736 |
T9571 |
T9572 |
advmod |
highly,similar |
R5737 |
T9572 |
T9563 |
acomp |
similar,is |
R5738 |
T9573 |
T9563 |
prep |
between,is |
R5739 |
T9574 |
T9575 |
advmod |
recently,duplicated |
R5740 |
T9575 |
T9576 |
amod |
duplicated,genes |
R5741 |
T9576 |
T9573 |
pobj |
genes,between |
R5742 |
T9577 |
T9563 |
punct |
.,is |
R5743 |
T9579 |
T9580 |
amod |
Many,pairs |
R5744 |
T9580 |
T9581 |
nsubj |
pairs,show |
R5745 |
T9582 |
T9580 |
prep |
of,pairs |
R5746 |
T9583 |
T9584 |
amod |
similar,receptors |
R5747 |
T9584 |
T9582 |
pobj |
receptors,of |
R5748 |
T9585 |
T9584 |
amod |
olfactory,receptors |
R5749 |
T9586 |
T9587 |
amod |
more,divergence |
R5750 |
T9587 |
T9581 |
dobj |
divergence,show |
R5751 |
T9588 |
T9587 |
compound |
sequence,divergence |
R5752 |
T9589 |
T9581 |
prep |
in,show |
R5753 |
T9590 |
T9591 |
det |
the,UTRs |
R5754 |
T9591 |
T9589 |
pobj |
UTRs,in |
R5755 |
T9592 |
T9581 |
prep |
than,show |
R5756 |
T9593 |
T9594 |
det |
the,region |
R5757 |
T9594 |
T9592 |
pobj |
region,than |
R5758 |
T9595 |
T9596 |
npadvmod |
protein,coding |
R5759 |
T9596 |
T9594 |
amod |
coding,region |
R5760 |
T9597 |
T9596 |
punct |
-,coding |
R5761 |
T9598 |
T9599 |
punct |
(,J.Y. |
R5762 |
T9599 |
T9581 |
meta |
J.Y.,show |
R5763 |
T9600 |
T9599 |
punct |
", ",J.Y. |
R5764 |
T9601 |
T9599 |
amod |
unpublished,J.Y. |
R5765 |
T9602 |
T9599 |
nmod |
observations,J.Y. |
R5766 |
T9603 |
T9599 |
punct |
),J.Y. |
R5767 |
T9604 |
T9581 |
punct |
.,show |
R5768 |
T9606 |
T9607 |
det |
The,UTRs |
R5769 |
T9607 |
T9608 |
nsubj |
UTRs,make |
R5770 |
T9609 |
T9608 |
aux |
would,make |
R5771 |
T9610 |
T9608 |
advmod |
therefore,make |
R5772 |
T9611 |
T9612 |
det |
a,choice |
R5773 |
T9612 |
T9608 |
dobj |
choice,make |
R5774 |
T9613 |
T9612 |
amod |
better,choice |
R5775 |
T9614 |
T9612 |
prep |
of,choice |
R5776 |
T9615 |
T9614 |
pobj |
sequence,of |
R5777 |
T9616 |
T9617 |
prep |
from,design |
R5778 |
T9617 |
T9615 |
relcl |
design,sequence |
R5779 |
T9618 |
T9616 |
pobj |
which,from |
R5780 |
T9619 |
T9617 |
aux |
to,design |
R5781 |
T9620 |
T9621 |
amod |
unique,oligonucleotides |
R5782 |
T9621 |
T9617 |
dobj |
oligonucleotides,design |
R5783 |
T9622 |
T9623 |
aux |
to,distinguish |
R5784 |
T9623 |
T9617 |
advcl |
distinguish,design |
R5785 |
T9624 |
T9625 |
advmod |
closely,related |
R5786 |
T9625 |
T9626 |
amod |
related,genes |
R5787 |
T9626 |
T9623 |
dobj |
genes,distinguish |
R5788 |
T9627 |
T9628 |
amod |
olfactory,receptor |
R5789 |
T9628 |
T9626 |
compound |
receptor,genes |
R5790 |
T9629 |
T9608 |
punct |
.,make |
R5791 |
T9631 |
T9632 |
nsubj |
Locations,are |
R5792 |
T9632 |
T9639 |
ccomp |
are,provides |
R5793 |
T9633 |
T9631 |
prep |
of,Locations |
R5794 |
T9634 |
T9635 |
det |
these,regions |
R5795 |
T9635 |
T9633 |
pobj |
regions,of |
R5796 |
T9636 |
T9631 |
prep |
in,Locations |
R5797 |
T9637 |
T9638 |
amod |
genomic,sequence |
R5798 |
T9638 |
T9636 |
pobj |
sequence,in |
R5799 |
T9640 |
T9632 |
acomp |
difficult,are |
R5800 |
T9641 |
T9642 |
aux |
to,predict |
R5801 |
T9642 |
T9640 |
advcl |
predict,difficult |
R5802 |
T9643 |
T9639 |
punct |
-,provides |
R5803 |
T9644 |
T9645 |
poss |
our,study |
R5804 |
T9645 |
T9639 |
nsubj |
study,provides |
R5805 |
T9646 |
T9647 |
nummod |
5,UTR |
R5806 |
T9647 |
T9649 |
compound |
UTR,sequences |
R5807 |
T9648 |
T9646 |
punct |
',5 |
R5808 |
T9649 |
T9639 |
dobj |
sequences,provides |
R5809 |
T9650 |
T9649 |
prep |
of,sequences |
R5810 |
T9651 |
T9652 |
nummod |
343,genes |
R5811 |
T9652 |
T9650 |
pobj |
genes,of |
R5812 |
T9653 |
T9649 |
cc |
and,sequences |
R5813 |
T9654 |
T9655 |
det |
the,length |
R5814 |
T9655 |
T9649 |
conj |
length,sequences |
R5815 |
T9656 |
T9655 |
amod |
approximate,length |
R5816 |
T9657 |
T9658 |
nummod |
3,UTR |
R5817 |
T9658 |
T9655 |
compound |
UTR,length |
R5818 |
T9659 |
T9657 |
punct |
',3 |
R5819 |
T9660 |
T9655 |
prep |
for,length |
R5820 |
T9661 |
T9662 |
nummod |
399,genes |
R5821 |
T9662 |
T9660 |
pobj |
genes,for |
R5822 |
T9663 |
T9664 |
amod |
olfactory,receptor |
R5823 |
T9664 |
T9662 |
compound |
receptor,genes |
R5824 |
T9665 |
T9639 |
punct |
.,provides |
R5825 |
T9667 |
T9668 |
compound |
Probe,design |
R5826 |
T9668 |
T9669 |
nsubj |
design,account |
R5827 |
T9669 |
T9672 |
ccomp |
account,designed |
R5828 |
T9670 |
T9669 |
aux |
must,account |
R5829 |
T9671 |
T9669 |
advmod |
also,account |
R5830 |
T9673 |
T9669 |
prep |
for,account |
R5831 |
T9674 |
T9675 |
det |
the,isoforms |
R5832 |
T9675 |
T9673 |
pobj |
isoforms,for |
R5833 |
T9676 |
T9675 |
amod |
multiple,isoforms |
R5834 |
T9677 |
T9675 |
amod |
transcriptional,isoforms |
R5835 |
T9678 |
T9675 |
acl |
observed,isoforms |
R5836 |
T9679 |
T9678 |
prep |
for,observed |
R5837 |
T9680 |
T9681 |
amod |
many,receptors |
R5838 |
T9681 |
T9679 |
pobj |
receptors,for |
R5839 |
T9682 |
T9681 |
amod |
olfactory,receptors |
R5840 |
T9683 |
T9672 |
punct |
-,designed |
R5841 |
T9684 |
T9672 |
prep |
depending,designed |
R5842 |
T9685 |
T9684 |
prep |
on,depending |
R5843 |
T9686 |
T9687 |
det |
the,question |
R5844 |
T9687 |
T9685 |
pobj |
question,on |
R5845 |
T9688 |
T9689 |
auxpass |
being,asked |
R5846 |
T9689 |
T9687 |
acl |
asked,question |
R5847 |
T9690 |
T9672 |
punct |
", ",designed |
R5848 |
T9691 |
T9672 |
nsubjpass |
probes,designed |
R5849 |
T9692 |
T9672 |
aux |
could,designed |
R5850 |
T9693 |
T9672 |
auxpass |
be,designed |
R5851 |
T9694 |
T9672 |
prep |
in,designed |
R5852 |
T9695 |
T9696 |
amod |
shared,sequence |
R5853 |
T9696 |
T9694 |
pobj |
sequence,in |
R5854 |
T9697 |
T9698 |
aux |
to,determine |
R5855 |
T9698 |
T9672 |
advcl |
determine,designed |
R5856 |
T9699 |
T9700 |
det |
the,level |
R5857 |
T9700 |
T9698 |
dobj |
level,determine |
R5858 |
T9701 |
T9700 |
amod |
total,level |
R5859 |
T9702 |
T9700 |
prep |
of,level |
R5860 |
T9703 |
T9704 |
det |
all,isoforms |
R5861 |
T9704 |
T9702 |
pobj |
isoforms,of |
R5862 |
T9705 |
T9672 |
punct |
", ",designed |
R5863 |
T9706 |
T9672 |
cc |
or,designed |
R5864 |
T9707 |
T9672 |
conj |
in,designed |
R5865 |
T9708 |
T9709 |
amod |
unique,exons |
R5866 |
T9709 |
T9707 |
pobj |
exons,in |
R5867 |
T9710 |
T9711 |
aux |
to,measure |
R5868 |
T9711 |
T9707 |
advcl |
measure,in |
R5869 |
T9712 |
T9713 |
det |
the,level |
R5870 |
T9713 |
T9711 |
dobj |
level,measure |
R5871 |
T9714 |
T9713 |
prep |
of,level |
R5872 |
T9715 |
T9716 |
det |
each,isoform |
R5873 |
T9716 |
T9714 |
pobj |
isoform,of |
R5874 |
T9717 |
T9711 |
advmod |
separately,measure |
R5875 |
T9718 |
T9672 |
punct |
.,designed |
R5876 |
T9720 |
T9721 |
nsubj |
We,find |
R5877 |
T9722 |
T9723 |
mark |
that,transcribed |
R5878 |
T9723 |
T9721 |
ccomp |
transcribed,find |
R5879 |
T9724 |
T9725 |
det |
the,majority |
R5880 |
T9725 |
T9723 |
nsubjpass |
majority,transcribed |
R5881 |
T9726 |
T9725 |
prep |
of,majority |
R5882 |
T9727 |
T9728 |
det |
the,receptors |
R5883 |
T9728 |
T9726 |
pobj |
receptors,of |
R5884 |
T9729 |
T9728 |
amod |
olfactory,receptors |
R5885 |
T9730 |
T9723 |
punct |
", ",transcribed |
R5886 |
T9731 |
T9723 |
prep |
like,transcribed |
R5887 |
T9732 |
T9733 |
amod |
most,genes |
R5888 |
T9733 |
T9731 |
pobj |
genes,like |
R5889 |
T9734 |
T9733 |
amod |
non-olfactory,genes |
R5890 |
T9735 |
T9733 |
compound |
receptor,genes |
R5891 |
T9842 |
T9841 |
punct |
", ",stability |
R5892 |
T9843 |
T9841 |
conj |
localization,stability |
R5893 |
T9844 |
T9843 |
cc |
or,localization |
R5894 |
T9845 |
T9843 |
conj |
degradation,localization |
R5895 |
T9846 |
T9847 |
punct |
[,42 |
R5896 |
T9847 |
T9823 |
parataxis |
42,have |
R5897 |
T9848 |
T9847 |
nummod |
41,42 |
R5898 |
T9849 |
T9847 |
punct |
",",42 |
R5899 |
T9850 |
T9847 |
punct |
],42 |
R5900 |
T9851 |
T9823 |
punct |
.,have |
R5901 |
T9853 |
T9854 |
poss |
Our,study |
R5902 |
T9854 |
T9855 |
nsubj |
study,shows |
R5903 |
T9856 |
T9857 |
mark |
that,fit |
R5904 |
T9857 |
T9855 |
ccomp |
fit,shows |
R5905 |
T9858 |
T9859 |
quantmod |
about,5 |
R5906 |
T9859 |
T9860 |
nummod |
5,% |
R5907 |
T9860 |
T9857 |
nsubj |
%,fit |
R5908 |
T9736 |
T9737 |
punct |
[,39 |
R5909 |
T9861 |
T9860 |
prep |
of,% |
R5910 |
T9737 |
T9723 |
parataxis |
39,transcribed |
R5911 |
T9862 |
T9863 |
amod |
olfactory,receptor |
R5912 |
T9738 |
T9737 |
nummod |
38,39 |
R5913 |
T9739 |
T9737 |
punct |
",",39 |
R5914 |
T9863 |
T9864 |
compound |
receptor,transcripts |
R5915 |
T9740 |
T9737 |
punct |
],39 |
R5916 |
T9741 |
T9723 |
punct |
", ",transcribed |
R5917 |
T9864 |
T9861 |
pobj |
transcripts,of |
R5918 |
T9742 |
T9723 |
auxpass |
are,transcribed |
R5919 |
T9743 |
T9723 |
prep |
as,transcribed |
R5920 |
T9744 |
T9745 |
amod |
multiple,isoforms |
R5921 |
T9745 |
T9743 |
pobj |
isoforms,as |
R5922 |
T9865 |
T9857 |
aux |
do,fit |
R5923 |
T9746 |
T9723 |
punct |
", ",transcribed |
R5924 |
T9747 |
T9723 |
advcl |
involving,transcribed |
R5925 |
T9866 |
T9857 |
neg |
not,fit |
R5926 |
T9748 |
T9749 |
amod |
alternative,splicing |
R5927 |
T9867 |
T9868 |
det |
the,notion |
R5928 |
T9868 |
T9857 |
dobj |
notion,fit |
R5929 |
T9749 |
T9747 |
dobj |
splicing,involving |
R5930 |
T9750 |
T9749 |
prep |
of,splicing |
R5931 |
T9869 |
T9868 |
amod |
current,notion |
R5932 |
T9751 |
T9752 |
nummod |
5,exons |
R5933 |
T9752 |
T9750 |
pobj |
exons,of |
R5934 |
T9753 |
T9751 |
punct |
',5 |
R5935 |
T9870 |
T9868 |
prep |
of,notion |
R5936 |
T9754 |
T9752 |
amod |
untranslated,exons |
R5937 |
T9755 |
T9749 |
cc |
and,splicing |
R5938 |
T9756 |
T9757 |
amod |
alternate,usage |
R5939 |
T9757 |
T9749 |
conj |
usage,splicing |
R5940 |
T9758 |
T9759 |
compound |
polyadenylation,site |
R5941 |
T9871 |
T9872 |
amod |
olfactory,receptor |
R5942 |
T9759 |
T9757 |
compound |
site,usage |
R5943 |
T9760 |
T9759 |
punct |
-,site |
R5944 |
T9761 |
T9721 |
punct |
.,find |
R5945 |
T9872 |
T9873 |
compound |
receptor,gene |
R5946 |
T9763 |
T9764 |
det |
The,act |
R5947 |
T9764 |
T9765 |
nsubj |
act,be |
R5948 |
T9873 |
T9874 |
compound |
gene,structure |
R5949 |
T9766 |
T9764 |
prep |
of,act |
R5950 |
T9874 |
T9870 |
pobj |
structure,of |
R5951 |
T9767 |
T9766 |
pobj |
splicing,of |
R5952 |
T9875 |
T9855 |
punct |
.,shows |
R5956 |
T9877 |
T9878 |
advmod |
Occasionally,spliced |
R5957 |
T9771 |
T9772 |
prep |
for,40 |
R5958 |
T9772 |
T9765 |
parataxis |
40,be |
R5959 |
T9773 |
T9774 |
amod |
efficient,export |
R5960 |
T9774 |
T9771 |
pobj |
export,for |
R5961 |
T9879 |
T9878 |
punct |
", ",spliced |
R5962 |
T9775 |
T9774 |
compound |
mRNA,export |
R5963 |
T9776 |
T9774 |
prep |
from,export |
R5964 |
T9777 |
T9778 |
det |
the,nucleus |
R5965 |
T9880 |
T9881 |
det |
an,intron |
R5966 |
T9778 |
T9776 |
pobj |
nucleus,from |
R5967 |
T9779 |
T9772 |
punct |
[,40 |
R5968 |
T9780 |
T9772 |
punct |
],40 |
R5969 |
T9881 |
T9878 |
nsubjpass |
intron,spliced |
R5970 |
T9781 |
T9772 |
cc |
or,40 |
R5971 |
T9782 |
T9783 |
aux |
to,couple |
R5972 |
T9882 |
T9878 |
auxpass |
is,spliced |
R5973 |
T9783 |
T9772 |
conj |
couple,40 |
R5974 |
T9784 |
T9785 |
amod |
olfactory,receptor |
R5975 |
T9785 |
T9786 |
compound |
receptor,regions |
R5976 |
T9883 |
T9878 |
prep |
out,spliced |
R5977 |
T9786 |
T9783 |
dobj |
regions,couple |
R5978 |
T9787 |
T9786 |
compound |
coding,regions |
R5979 |
T9884 |
T9883 |
prep |
of,out |
R5980 |
T9788 |
T9783 |
prep |
with,couple |
R5981 |
T9789 |
T9790 |
advmod |
genomically,distant |
R5982 |
T9790 |
T9791 |
amod |
distant,promoters |
R5983 |
T9885 |
T9886 |
det |
the,region |
R5984 |
T9791 |
T9788 |
pobj |
promoters,with |
R5985 |
T9792 |
T9765 |
punct |
.,be |
R5986 |
T9886 |
T9884 |
pobj |
region,of |
R5987 |
T9794 |
T9795 |
det |
The,nature |
R5988 |
T9795 |
T9797 |
nsubj |
nature,be |
R5989 |
T9887 |
T9886 |
nummod |
3,region |
R5990 |
T9796 |
T9795 |
amod |
exact,nature |
R5991 |
T9798 |
T9795 |
prep |
of,nature |
R5992 |
T9799 |
T9800 |
det |
the,transcript |
R5993 |
T9800 |
T9798 |
pobj |
transcript,of |
R5994 |
T9888 |
T9887 |
punct |
',3 |
R5995 |
T9801 |
T9800 |
amod |
spliced,transcript |
R5996 |
T9802 |
T9797 |
aux |
might,be |
R5997 |
T9803 |
T9797 |
acomp |
unimportant,be |
R5998 |
T9889 |
T9886 |
amod |
untranslated,region |
R5999 |
T9804 |
T9797 |
punct |
", ",be |
R6000 |
T9805 |
T9806 |
amod |
such,produced |
R6001 |
T9890 |
T9878 |
punct |
.,spliced |
R6002 |
T9806 |
T9797 |
advcl |
produced,be |
R6003 |
T9807 |
T9806 |
mark |
that,produced |
R6004 |
T9808 |
T9809 |
amod |
several,isoforms |
R6005 |
T9892 |
T9893 |
det |
A,number |
R6006 |
T9809 |
T9806 |
nsubjpass |
isoforms,produced |
R6007 |
T9810 |
T9806 |
aux |
might,produced |
R6008 |
T9811 |
T9806 |
auxpass |
be,produced |
R6009 |
T9893 |
T9894 |
nsubj |
number,use |
R6010 |
T9812 |
T9813 |
advmod |
simply,are |
R6011 |
T9813 |
T9806 |
advcl |
are,produced |
R6012 |
T9814 |
T9813 |
mark |
because,are |
R6013 |
T9815 |
T9816 |
amod |
multiple,sites |
R6014 |
T9895 |
T9893 |
prep |
of,number |
R6015 |
T9816 |
T9813 |
nsubj |
sites,are |
R6016 |
T9817 |
T9816 |
amod |
functional,sites |
R6017 |
T9818 |
T9816 |
compound |
splice,sites |
R6018 |
T9819 |
T9813 |
acomp |
available,are |
R6019 |
T9896 |
T9895 |
pobj |
cDNAs,of |
R6020 |
T9820 |
T9797 |
punct |
.,be |
R6021 |
T9897 |
T9898 |
compound |
splice,sites |
R6022 |
T9822 |
T9823 |
advmod |
Alternatively,have |
R6023 |
T9824 |
T9823 |
punct |
", ",have |
R6024 |
T9898 |
T9894 |
dobj |
sites,use |
R6025 |
T9825 |
T9826 |
det |
the,multiplicity |
R6026 |
T9826 |
T9823 |
nsubj |
multiplicity,have |
R6027 |
T9827 |
T9826 |
prep |
of,multiplicity |
R6028 |
T9899 |
T9898 |
prep |
within,sites |
R6029 |
T9828 |
T9829 |
amod |
transcriptional,isoforms |
R6030 |
T9829 |
T9827 |
pobj |
isoforms,of |
R6031 |
T9830 |
T9823 |
aux |
might,have |
R6032 |
T9900 |
T9901 |
det |
the,receptor |
R6033 |
T9831 |
T9832 |
amod |
functional,significance |
R6034 |
T9832 |
T9823 |
dobj |
significance,have |
R6035 |
T9901 |
T9903 |
poss |
receptor,ORF |
R6036 |
T9833 |
T9823 |
punct |
", ",have |
R6037 |
T9834 |
T9835 |
mark |
as,contain |
R6038 |
T9902 |
T9901 |
amod |
olfactory,receptor |
R6039 |
T9835 |
T9823 |
advcl |
contain,have |
R6040 |
T9903 |
T9899 |
pobj |
ORF,within |
R6041 |
T9836 |
T9835 |
nsubj |
UTRs,contain |
R6042 |
T9837 |
T9835 |
aux |
may,contain |
R6043 |
T9838 |
T9835 |
dobj |
signals,contain |
R6044 |
T9839 |
T9838 |
acl |
controlling,signals |
R6045 |
T9840 |
T9841 |
compound |
mRNA,stability |
R6046 |
T9904 |
T9901 |
case |
's,receptor |
R6047 |
T9841 |
T9839 |
dobj |
stability,controlling |
R6048 |
T9905 |
T9894 |
punct |
", ",use |
R6049 |
T9906 |
T9894 |
advcl |
meaning,use |
R6050 |
T9907 |
T9908 |
mark |
that,is |
R6051 |
T9908 |
T9906 |
ccomp |
is,meaning |
R6052 |
T9909 |
T9910 |
poss |
their,product |
R6053 |
T9910 |
T9908 |
nsubj |
product,is |
R6054 |
T9948 |
T9946 |
compound |
amino,acids |
R6055 |
T9949 |
T9940 |
agent |
by,encoded |
R6056 |
T9911 |
T9910 |
compound |
protein,product |
R6057 |
T9950 |
T9951 |
det |
an,exon |
R6058 |
T9951 |
T9949 |
pobj |
exon,by |
R6059 |
T9912 |
T9908 |
acomp |
different,is |
R6060 |
T9952 |
T9951 |
amod |
upstream,exon |
R6061 |
T9953 |
T9926 |
punct |
", ",encode |
R6062 |
T9954 |
T9955 |
mark |
as,observed |
R6063 |
T9913 |
T9912 |
prep |
from,different |
R6064 |
T9955 |
T9926 |
advcl |
observed,encode |
R6065 |
T9956 |
T9955 |
aux |
has,observed |
R6066 |
T9914 |
T9913 |
pobj |
that,from |
R6067 |
T9957 |
T9955 |
auxpass |
been,observed |
R6068 |
T9958 |
T9955 |
advmod |
previously,observed |
R6069 |
T9915 |
T9914 |
acl |
predicted,that |
R6070 |
T9959 |
T9955 |
prep |
for,observed |
R6071 |
T9960 |
T9961 |
det |
a,gene |
R6072 |
T9961 |
T9959 |
pobj |
gene,for |
R6073 |
T9916 |
T9915 |
prep |
on,predicted |
R6074 |
T9962 |
T9961 |
amod |
subtelomeric,gene |
R6075 |
T9963 |
T9961 |
amod |
human,gene |
R6076 |
T9964 |
T9965 |
amod |
olfactory,receptor |
R6077 |
T9917 |
T9918 |
det |
the,basis |
R6078 |
T9965 |
T9961 |
compound |
receptor,gene |
R6079 |
T9966 |
T9967 |
punct |
[,25 |
R6080 |
T9918 |
T9916 |
pobj |
basis,on |
R6081 |
T9967 |
T9926 |
parataxis |
25,encode |
R6082 |
T9968 |
T9967 |
punct |
],25 |
R6083 |
T9969 |
T9926 |
punct |
.,encode |
R6084 |
T9919 |
T9918 |
prep |
of,basis |
R6085 |
T9971 |
T9972 |
amod |
Such,splicing |
R6086 |
T9972 |
T9976 |
nsubj |
splicing,increase |
R6087 |
T9920 |
T9921 |
amod |
genomic,sequence |
R6088 |
T9973 |
T9972 |
nmod |
within,splicing |
R6089 |
T9974 |
T9973 |
punct |
-,within |
R6090 |
T9975 |
T9973 |
pobj |
ORF,within |
R6091 |
T9921 |
T9919 |
pobj |
sequence,of |
R6092 |
T9977 |
T9976 |
aux |
might,increase |
R6093 |
T9978 |
T9979 |
npadvmod |
protein,coding |
R6094 |
T9979 |
T9981 |
amod |
coding,diversity |
R6095 |
T9980 |
T9979 |
punct |
-,coding |
R6096 |
T9981 |
T9976 |
dobj |
diversity,increase |
R6097 |
T9982 |
T9976 |
punct |
", ",increase |
R6098 |
T9922 |
T9921 |
advmod |
alone,sequence |
R6099 |
T9983 |
T9984 |
mark |
although,is |
R6100 |
T9984 |
T9976 |
advcl |
is,increase |
R6101 |
T9985 |
T9984 |
punct |
", ",is |
R6102 |
T9923 |
T9894 |
punct |
.,use |
R6103 |
T9986 |
T9984 |
prep |
given,is |
R6104 |
T9987 |
T9988 |
det |
the,number |
R6105 |
T9988 |
T9986 |
pobj |
number,given |
R6106 |
T9925 |
T9926 |
prep |
In,encode |
R6107 |
T9989 |
T9988 |
amod |
small,number |
R6108 |
T9990 |
T9988 |
prep |
of,number |
R6109 |
T9991 |
T9990 |
pobj |
genes,of |
R6110 |
T9992 |
T9988 |
acl |
involved,number |
R6111 |
T9993 |
T9984 |
punct |
", ",is |
R6112 |
T9927 |
T9928 |
nummod |
two,cases |
R6113 |
T9994 |
T9984 |
nsubj |
splicing,is |
R6114 |
T9995 |
T9984 |
acomp |
unlikely,is |
R6115 |
T9996 |
T9997 |
aux |
to,affect |
R6116 |
T9997 |
T9995 |
xcomp |
affect,unlikely |
R6117 |
T9928 |
T9925 |
pobj |
cases,In |
R6118 |
T9998 |
T9997 |
advmod |
significantly,affect |
R6119 |
T9999 |
T10000 |
det |
the,repertoire |
R6120 |
T10000 |
T9997 |
dobj |
repertoire,affect |
R6121 |
T10001 |
T10000 |
amod |
functional,repertoire |
R6122 |
T9929 |
T9928 |
amod |
such,cases |
R6123 |
T10002 |
T10000 |
compound |
receptor,repertoire |
R6124 |
T10003 |
T9976 |
punct |
.,increase |
R6125 |
T9930 |
T9926 |
punct |
", ",encode |
R6126 |
T10005 |
T10006 |
nsubj |
Most,appear |
R6127 |
T10007 |
T10005 |
prep |
of,Most |
R6128 |
T9931 |
T9932 |
det |
the,transcript |
R6129 |
T10008 |
T10009 |
det |
the,forms |
R6130 |
T9932 |
T9926 |
nsubj |
transcript,encode |
R6131 |
T9933 |
T9926 |
aux |
would,encode |
R6132 |
T10009 |
T10007 |
pobj |
forms,of |
R6133 |
T9934 |
T9935 |
det |
a,receptor |
R6134 |
T10010 |
T10009 |
amod |
atypical,forms |
R6135 |
T10011 |
T10009 |
compound |
splice,forms |
R6136 |
T10012 |
T10013 |
nsubj |
we,observe |
R6137 |
T9935 |
T9926 |
dobj |
receptor,encode |
R6138 |
T10013 |
T10009 |
advcl |
observe,forms |
R6139 |
T10014 |
T10015 |
aux |
to,encode |
R6140 |
T10015 |
T10006 |
xcomp |
encode,appear |
R6141 |
T9936 |
T9935 |
amod |
functional,receptor |
R6142 |
T10016 |
T10017 |
amod |
non-functional,transcripts |
R6143 |
T10017 |
T10015 |
dobj |
transcripts,encode |
R6144 |
T9937 |
T9935 |
amod |
olfactory,receptor |
R6145 |
T10018 |
T10017 |
punct |
", ",transcripts |
R6146 |
T10019 |
T10017 |
acl |
containing,transcripts |
R6147 |
T10020 |
T10019 |
dobj |
frameshifts,containing |
R6148 |
T10021 |
T10019 |
cc |
or,containing |
R6149 |
T10022 |
T10019 |
conj |
lacking,containing |
R6150 |
T9938 |
T9926 |
punct |
", ",encode |
R6151 |
T10023 |
T10024 |
det |
a,codon |
R6152 |
T10024 |
T10022 |
dobj |
codon,lacking |
R6153 |
T10025 |
T10024 |
compound |
start,codon |
R6154 |
T9939 |
T9940 |
mark |
with,encoded |
R6155 |
T10026 |
T10024 |
cc |
or,codon |
R6156 |
T10027 |
T10028 |
amod |
other,residues |
R6157 |
T10028 |
T10024 |
conj |
residues,codon |
R6158 |
T9940 |
T9926 |
advcl |
encoded,encode |
R6159 |
T10029 |
T10028 |
amod |
functional,residues |
R6160 |
T10030 |
T10028 |
acl |
conserved,residues |
R6161 |
T10031 |
T10030 |
prep |
throughout,conserved |
R6162 |
T9941 |
T9942 |
det |
the,methionine |
R6163 |
T10032 |
T10033 |
det |
the,family |
R6164 |
T10033 |
T10031 |
pobj |
family,throughout |
R6165 |
T10034 |
T10035 |
amod |
olfactory,receptor |
R6166 |
T9942 |
T9940 |
nsubj |
methionine,encoded |
R6167 |
T10035 |
T10033 |
compound |
receptor,family |
R6168 |
T10036 |
T10006 |
punct |
.,appear |
R6169 |
T9943 |
T9942 |
amod |
initiating,methionine |
R6170 |
T10038 |
T10039 |
det |
These,transcripts |
R6171 |
T10039 |
T10041 |
nsubj |
transcripts,are |
R6172 |
T9944 |
T9942 |
cc |
and,methionine |
R6173 |
T10040 |
T10039 |
amod |
nonfunctional,transcripts |
R6174 |
T10042 |
T10041 |
advmod |
probably,are |
R6175 |
T9945 |
T9946 |
amod |
first,acids |
R6176 |
T10043 |
T10044 |
amod |
aberrant,products |
R6177 |
T10044 |
T10041 |
attr |
products,are |
R6178 |
T10045 |
T10044 |
compound |
by,products |
R6179 |
T9946 |
T9942 |
conj |
acids,methionine |
R6180 |
T10046 |
T10044 |
punct |
-,products |
R6181 |
T10047 |
T10044 |
prep |
of,products |
R6182 |
T10048 |
T10049 |
det |
the,system |
R6183 |
T9947 |
T9946 |
amod |
few,acids |
R6184 |
T10049 |
T10047 |
pobj |
system,of |
R6185 |
T10050 |
T10049 |
compound |
splicing,system |
R6186 |
T10051 |
T10052 |
punct |
[,43 |
R6187 |
T10054 |
T10055 |
dep |
that,degraded |
R6188 |
T10052 |
T10044 |
parataxis |
43,products |
R6189 |
T10053 |
T10052 |
punct |
],43 |
R6190 |
T10055 |
T10044 |
relcl |
degraded,products |
R6191 |
T10056 |
T10055 |
aux |
have,degraded |
R6192 |
T10057 |
T10055 |
neg |
not,degraded |
R6193 |
T10058 |
T10055 |
advmod |
yet,degraded |
R6194 |
T10160 |
T10158 |
pobj |
pseudogenes,for |
R6195 |
T10161 |
T10160 |
amod |
human,pseudogenes |
R6196 |
T10059 |
T10055 |
auxpass |
been,degraded |
R6197 |
T10162 |
T10163 |
amod |
olfactory,receptor |
R6198 |
T10163 |
T10160 |
compound |
receptor,pseudogenes |
R6199 |
T10164 |
T10165 |
punct |
[,44 |
R6200 |
T10165 |
T10143 |
parataxis |
44,observe |
R6201 |
T10166 |
T10165 |
nummod |
26,44 |
R6202 |
T10060 |
T10055 |
agent |
by,degraded |
R6203 |
T10167 |
T10165 |
punct |
",",44 |
R6204 |
T10168 |
T10165 |
punct |
],44 |
R6205 |
T10169 |
T10143 |
punct |
.,observe |
R6206 |
T10061 |
T10062 |
compound |
RNA,systems |
R6207 |
T10171 |
T10172 |
mark |
Although,represented |
R6208 |
T10172 |
T10180 |
advcl |
represented,express |
R6209 |
T10062 |
T10060 |
pobj |
systems,by |
R6210 |
T10173 |
T10174 |
amod |
many,fewer |
R6211 |
T10174 |
T10175 |
amod |
fewer,pseudogenes |
R6212 |
T10175 |
T10172 |
nsubjpass |
pseudogenes,represented |
R6213 |
T10063 |
T10062 |
compound |
surveillance,systems |
R6214 |
T10176 |
T10175 |
prep |
than,pseudogenes |
R6215 |
T10177 |
T10178 |
amod |
intact,genes |
R6216 |
T10064 |
T10065 |
punct |
[,41 |
R6217 |
T10178 |
T10176 |
pobj |
genes,than |
R6218 |
T10179 |
T10172 |
auxpass |
were,represented |
R6219 |
T10065 |
T10055 |
parataxis |
41,degraded |
R6220 |
T10181 |
T10172 |
prep |
in,represented |
R6221 |
T10066 |
T10065 |
nummod |
40,41 |
R6222 |
T10182 |
T10183 |
poss |
our,collection |
R6223 |
T10067 |
T10065 |
punct |
",",41 |
R6224 |
T10183 |
T10181 |
pobj |
collection,in |
R6225 |
T10184 |
T10183 |
compound |
cDNA,collection |
R6226 |
T10068 |
T10065 |
punct |
],41 |
R6227 |
T10185 |
T10180 |
punct |
", ",express |
R6228 |
T10186 |
T10187 |
det |
some,neurons |
R6229 |
T10187 |
T10180 |
nsubj |
neurons,express |
R6230 |
T10069 |
T10041 |
punct |
.,are |
R6231 |
T10188 |
T10187 |
prep |
in,neurons |
R6232 |
T10189 |
T10190 |
det |
the,epithelium |
R6233 |
T10071 |
T10072 |
det |
The,neurons |
R6234 |
T10190 |
T10188 |
pobj |
epithelium,in |
R6235 |
T10191 |
T10190 |
amod |
olfactory,epithelium |
R6236 |
T10192 |
T10180 |
advmod |
evidently,express |
R6237 |
T10193 |
T10194 |
amod |
disrupted,receptors |
R6239 |
T10194 |
T10180 |
dobj |
receptors,express |
R6240 |
T10195 |
T10194 |
amod |
olfactory,receptors |
R6241 |
T10196 |
T10180 |
cc |
and,express |
R6242 |
T10074 |
T10072 |
acl |
expressing,neurons |
R6243 |
T10197 |
T10198 |
advmod |
thus,be |
R6244 |
T10198 |
T10180 |
conj |
be,express |
R6245 |
T10199 |
T10198 |
aux |
might,be |
R6246 |
T10200 |
T10198 |
acomp |
unable,be |
R6247 |
T10075 |
T10076 |
det |
these,transcripts |
R6248 |
T10201 |
T10202 |
aux |
to,respond |
R6249 |
T10202 |
T10200 |
xcomp |
respond,unable |
R6250 |
T10076 |
T10074 |
dobj |
transcripts,expressing |
R6251 |
T10203 |
T10202 |
prep |
to,respond |
R6252 |
T10204 |
T10203 |
pobj |
odorants,to |
R6253 |
T10205 |
T10202 |
cc |
or,respond |
R6254 |
T10206 |
T10207 |
aux |
to,innervate |
R6255 |
T10207 |
T10202 |
conj |
innervate,respond |
R6256 |
T10077 |
T10076 |
amod |
aberrant,transcripts |
R6257 |
T10208 |
T10207 |
advmod |
correctly,innervate |
R6258 |
T10209 |
T10210 |
det |
the,bulb |
R6259 |
T10210 |
T10207 |
dobj |
bulb,innervate |
R6260 |
T10078 |
T10073 |
aux |
might,make |
R6261 |
T10211 |
T10210 |
amod |
olfactory,bulb |
R6262 |
T10212 |
T10180 |
punct |
.,express |
R6263 |
T10079 |
T10073 |
advmod |
also,make |
R6264 |
T10214 |
T10215 |
nsubj |
Wang,shown |
R6265 |
T10080 |
T10081 |
amod |
normal,transcripts |
R6266 |
T10216 |
T10214 |
punct |
", ",Wang |
R6267 |
T10217 |
T10214 |
conj |
Axel,Wang |
R6268 |
T10218 |
T10217 |
cc |
and,Axel |
R6269 |
T10081 |
T10073 |
dobj |
transcripts,make |
R6270 |
T10219 |
T10217 |
conj |
coworkers,Axel |
R6271 |
T10220 |
T10215 |
aux |
have,shown |
R6272 |
T10221 |
T10222 |
mark |
that,support |
R6273 |
T10082 |
T10073 |
prep |
for,make |
R6274 |
T10222 |
T10215 |
advcl |
support,shown |
R6275 |
T10223 |
T10224 |
det |
an,gene |
R6276 |
T10083 |
T10084 |
det |
the,genes |
R6277 |
T10224 |
T10222 |
nsubj |
gene,support |
R6278 |
T10225 |
T10224 |
amod |
artificial,gene |
R6279 |
T10226 |
T10224 |
amod |
transgenic,gene |
R6280 |
T10084 |
T10082 |
pobj |
genes,for |
R6281 |
T10227 |
T10228 |
amod |
olfactory,receptor |
R6282 |
T10228 |
T10224 |
compound |
receptor,gene |
R6283 |
T10229 |
T10224 |
acl |
containing,gene |
R6284 |
T10085 |
T10084 |
amod |
same,genes |
R6285 |
T10230 |
T10231 |
nummod |
two,mutations |
R6286 |
T10231 |
T10229 |
dobj |
mutations,containing |
R6287 |
T10086 |
T10073 |
cc |
and,make |
R6288 |
T10232 |
T10231 |
amod |
nonsense,mutations |
R6289 |
T10233 |
T10222 |
aux |
can,support |
R6290 |
T10234 |
T10222 |
dobj |
development,support |
R6291 |
T10087 |
T10088 |
advmod |
thus,produce |
R6292 |
T10235 |
T10234 |
prep |
of,development |
R6293 |
T10236 |
T10237 |
det |
an,neuron |
R6294 |
T10237 |
T10235 |
pobj |
neuron,of |
R6295 |
T10088 |
T10073 |
conj |
produce,make |
R6296 |
T10238 |
T10237 |
amod |
olfactory,neuron |
R6297 |
T10239 |
T10222 |
punct |
", ",support |
R6298 |
T10240 |
T10222 |
cc |
but,support |
R6299 |
T10089 |
T10090 |
det |
a,receptor |
R6300 |
T10241 |
T10242 |
mark |
that,fail |
R6301 |
T10242 |
T10222 |
conj |
fail,support |
R6302 |
T10243 |
T10244 |
npadvmod |
pseudogene,expressing |
R6303 |
T10244 |
T10246 |
amod |
expressing,neurons |
R6304 |
T10245 |
T10244 |
punct |
-,expressing |
R6305 |
T10246 |
T10242 |
nsubj |
neurons,fail |
R6306 |
T10090 |
T10088 |
dobj |
receptor,produce |
R6307 |
T10247 |
T10248 |
aux |
to,converge |
R6308 |
T10248 |
T10242 |
xcomp |
converge,fail |
R6309 |
T10249 |
T10248 |
prep |
on,converge |
R6310 |
T10091 |
T10090 |
amod |
functional,receptor |
R6311 |
T10250 |
T10251 |
det |
a,glomerulus |
R6312 |
T10251 |
T10249 |
pobj |
glomerulus,on |
R6313 |
T10252 |
T10248 |
prep |
in,converge |
R6314 |
T10092 |
T10090 |
amod |
olfactory,receptor |
R6315 |
T10253 |
T10254 |
det |
the,bulb |
R6316 |
T10254 |
T10252 |
pobj |
bulb,in |
R6317 |
T10093 |
T10073 |
punct |
.,make |
R6318 |
T10255 |
T10254 |
amod |
olfactory,bulb |
R6319 |
T10256 |
T10257 |
punct |
[,45 |
R6320 |
T10095 |
T10096 |
advmod |
Alternatively,ensure |
R6321 |
T10257 |
T10215 |
parataxis |
45,shown |
R6322 |
T10258 |
T10257 |
punct |
],45 |
R6323 |
T10259 |
T10215 |
punct |
.,shown |
R6324 |
T10097 |
T10096 |
punct |
", ",ensure |
R6325 |
T10261 |
T10262 |
prep |
By,is |
R6326 |
T10263 |
T10261 |
pobj |
analogy,By |
R6327 |
T10264 |
T10263 |
prep |
with,analogy |
R6328 |
T10098 |
T10099 |
det |
the,regulation |
R6329 |
T10265 |
T10266 |
det |
an,mutant |
R6330 |
T10099 |
T10096 |
nsubj |
regulation,ensure |
R6331 |
T10100 |
T10099 |
amod |
unusual,regulation |
R6332 |
T10101 |
T10099 |
amod |
transcriptional,regulation |
R6333 |
T10102 |
T10099 |
prep |
of,regulation |
R6334 |
T10103 |
T10104 |
amod |
olfactory,receptors |
R6335 |
T10104 |
T10102 |
pobj |
receptors,of |
R6337 |
T10105 |
T10096 |
aux |
might,ensure |
R6338 |
T10267 |
T10268 |
amod |
olfactory,receptor |
R6340 |
T10106 |
T10107 |
mark |
that,expressed |
R6343 |
T10107 |
T10096 |
ccomp |
expressed,ensure |
R6347 |
T10108 |
T10109 |
advmod |
only,isoform |
R6350 |
T10109 |
T10107 |
nsubjpass |
isoform,expressed |
R6354 |
T10110 |
T10109 |
nummod |
one,isoform |
R6360 |
T10111 |
T10109 |
compound |
splice,isoform |
R6365 |
T10112 |
T10107 |
auxpass |
is,expressed |
R6368 |
T10113 |
T10107 |
prep |
per,expressed |
R6373 |
T10114 |
T10113 |
pobj |
cell,per |
R6374 |
T10294 |
T10295 |
det |
a,number |
R6375 |
T10295 |
T10293 |
dobj |
number,leaving |
R6376 |
T10115 |
T10116 |
punct |
(,unlikely |
R6377 |
T10296 |
T10295 |
amod |
small,number |
R6378 |
T10297 |
T10295 |
prep |
of,number |
R6379 |
T10298 |
T10299 |
npadvmod |
pseudogene,expressing |
R6380 |
T10116 |
T10107 |
parataxis |
unlikely,expressed |
R6381 |
T10299 |
T10301 |
amod |
expressing,neurons |
R6382 |
T10300 |
T10299 |
punct |
-,expressing |
R6383 |
T10117 |
T10116 |
punct |
", ",unlikely |
R6384 |
T10118 |
T10116 |
cc |
but,unlikely |
R6385 |
T10119 |
T10116 |
conj |
possible,unlikely |
R6386 |
T10301 |
T10297 |
pobj |
neurons,of |
R6387 |
T10120 |
T10121 |
mark |
if,operates |
R6388 |
T10302 |
T10293 |
prep |
in,leaving |
R6389 |
T10303 |
T10304 |
amod |
adult,mice |
R6390 |
T10121 |
T10116 |
advcl |
operates,unlikely |
R6391 |
T10304 |
T10302 |
pobj |
mice,in |
R6392 |
T10305 |
T10293 |
punct |
", ",leaving |
R6393 |
T10122 |
T10123 |
det |
an,mechanism |
R6394 |
T10306 |
T10307 |
cc |
but,at |
R6395 |
T10307 |
T10293 |
prep |
at,leaving |
R6396 |
T10308 |
T10309 |
advmod |
greatly,reduced |
R6397 |
T10123 |
T10121 |
nsubj |
mechanism,operates |
R6398 |
T10309 |
T10310 |
amod |
reduced,levels |
R6399 |
T10310 |
T10307 |
pobj |
levels,at |
R6400 |
T10311 |
T10310 |
prep |
compared,levels |
R6401 |
T10124 |
T10125 |
npadvmod |
RNA,based |
R6402 |
T10312 |
T10311 |
prep |
to,compared |
R6403 |
T10313 |
T10312 |
pobj |
neurons,to |
R6404 |
T10314 |
T10313 |
acl |
expressing,neurons |
R6405 |
T10125 |
T10123 |
amod |
based,mechanism |
R6406 |
T10315 |
T10316 |
amod |
intact,receptors |
R6407 |
T10316 |
T10314 |
dobj |
receptors,expressing |
R6408 |
T10317 |
T10316 |
amod |
olfactory,receptors |
R6409 |
T10318 |
T10262 |
punct |
.,is |
R6410 |
T10126 |
T10125 |
punct |
-,based |
R6411 |
T10127 |
T10123 |
compound |
feedback,mechanism |
R6412 |
T10128 |
T10116 |
punct |
),unlikely |
R6413 |
T10129 |
T10107 |
punct |
", ",expressed |
R6414 |
T10130 |
T10131 |
advmod |
thus,condemning |
R6415 |
T10131 |
T10107 |
advcl |
condemning,expressed |
R6416 |
T10132 |
T10133 |
nsubj |
cells,be |
R6417 |
T10133 |
T10131 |
ccomp |
be,condemning |
R6418 |
T10134 |
T10132 |
acl |
expressing,cells |
R6419 |
T10135 |
T10136 |
det |
these,isoforms |
R6420 |
T10136 |
T10134 |
dobj |
isoforms,expressing |
R6421 |
T10137 |
T10136 |
amod |
aberrant,isoforms |
R6422 |
T10138 |
T10133 |
aux |
to,be |
R6423 |
T10139 |
T10133 |
acomp |
dysfunctional,be |
R6424 |
T10140 |
T10096 |
punct |
.,ensure |
R6425 |
T10142 |
T10143 |
nsubj |
We,observe |
R6426 |
T10144 |
T10143 |
advmod |
also,observe |
R6427 |
T10145 |
T10143 |
dobj |
transcripts,observe |
R6428 |
T10146 |
T10145 |
prep |
from,transcripts |
R6429 |
T10147 |
T10148 |
det |
a,number |
R6430 |
T10148 |
T10146 |
pobj |
number,from |
R6431 |
T10149 |
T10148 |
amod |
small,number |
R6432 |
T10150 |
T10148 |
prep |
of,number |
R6433 |
T10151 |
T10152 |
amod |
olfactory,receptor |
R6434 |
T10152 |
T10153 |
compound |
receptor,pseudogenes |
R6435 |
T10153 |
T10150 |
pobj |
pseudogenes,of |
R6436 |
T10154 |
T10143 |
punct |
", ",observe |
R6437 |
T10155 |
T10156 |
mark |
as,described |
R6438 |
T10156 |
T10143 |
advcl |
described,observe |
R6439 |
T10157 |
T10156 |
advmod |
previously,described |
R6440 |
T10158 |
T10156 |
prep |
for,described |
R6441 |
T10159 |
T10160 |
nummod |
three,pseudogenes |
R6442 |
T10408 |
T10409 |
poss |
Our,study |
R6443 |
T10409 |
T10410 |
nsubj |
study,provided |
R6444 |
T10411 |
T10410 |
aux |
has,provided |
R6445 |
T10412 |
T10413 |
det |
an,resource |
R6446 |
T10413 |
T10410 |
dobj |
resource,provided |
R6447 |
T10414 |
T10415 |
amod |
olfactory,receptor |
R6448 |
T10415 |
T10416 |
compound |
receptor,cDNA |
R6449 |
T10416 |
T10413 |
compound |
cDNA,resource |
R6450 |
T10417 |
T10413 |
acl |
representing,resource |
R6451 |
T10418 |
T10419 |
quantmod |
over,one |
R6452 |
T10419 |
T10417 |
dobj |
one,representing |
R6453 |
T10420 |
T10419 |
punct |
-,one |
R6454 |
T10421 |
T10419 |
amod |
third,one |
R6455 |
T10422 |
T10419 |
prep |
of,one |
R6456 |
T10423 |
T10424 |
det |
the,family |
R6457 |
T10424 |
T10422 |
pobj |
family,of |
R6458 |
T10425 |
T10426 |
amod |
olfactory,receptor |
R6459 |
T10426 |
T10427 |
compound |
receptor,gene |
R6460 |
T10427 |
T10424 |
compound |
gene,family |
R6461 |
T10428 |
T10410 |
punct |
.,provided |
R6462 |
T10430 |
T10431 |
nsubj |
We,established |
R6463 |
T10432 |
T10431 |
aux |
have,established |
R6464 |
T10433 |
T10431 |
advmod |
thus,established |
R6465 |
T10434 |
T10435 |
quantmod |
over,400 |
R6466 |
T10435 |
T10436 |
nummod |
400,genes |
R6467 |
T10436 |
T10431 |
dobj |
genes,established |
R6468 |
T10437 |
T10436 |
amod |
annotated,genes |
R6469 |
T10438 |
T10439 |
amod |
olfactory,receptor |
R6470 |
T10439 |
T10436 |
compound |
receptor,genes |
R6471 |
T10440 |
T10431 |
prep |
as,established |
R6472 |
T10441 |
T10440 |
pcomp |
having,as |
R6473 |
T10442 |
T10443 |
amod |
olfactory,function |
R6474 |
T10443 |
T10441 |
dobj |
function,having |
R6475 |
T10444 |
T10431 |
punct |
.,established |
R6476 |
T10446 |
T10447 |
det |
The,sequences |
R6477 |
T10447 |
T10448 |
nsubj |
sequences,demonstrate |
R6478 |
T10449 |
T10450 |
nsubj |
we,generated |
R6479 |
T10450 |
T10447 |
advcl |
generated,sequences |
R6480 |
T10451 |
T10452 |
mark |
that,has |
R6481 |
T10452 |
T10448 |
ccomp |
has,demonstrate |
R6482 |
T10453 |
T10454 |
det |
the,majority |
R6483 |
T10454 |
T10452 |
nsubj |
majority,has |
R6484 |
T10455 |
T10454 |
prep |
of,majority |
R6485 |
T10456 |
T10457 |
det |
the,family |
R6486 |
T10457 |
T10455 |
pobj |
family,of |
R6487 |
T10458 |
T10459 |
amod |
olfactory,receptor |
R6488 |
T10459 |
T10460 |
compound |
receptor,gene |
R6489 |
T10460 |
T10457 |
compound |
gene,family |
R6490 |
T10461 |
T10462 |
amod |
multiple,isoforms |
R6491 |
T10462 |
T10452 |
dobj |
isoforms,has |
R6492 |
T10463 |
T10462 |
amod |
transcriptional,isoforms |
R6493 |
T10464 |
T10448 |
punct |
.,demonstrate |
R6494 |
T10466 |
T10467 |
advmod |
Most,transcripts |
R6495 |
T10467 |
T10470 |
nsubj |
transcripts,encode |
R6496 |
T10468 |
T10469 |
amod |
olfactory,receptor |
R6497 |
T10469 |
T10467 |
compound |
receptor,transcripts |
R6498 |
T10471 |
T10472 |
amod |
functional,proteins |
R6499 |
T10472 |
T10470 |
dobj |
proteins,encode |
R6500 |
T10473 |
T10472 |
compound |
receptor,proteins |
R6501 |
T10474 |
T10470 |
punct |
", ",encode |
R6502 |
T10475 |
T10470 |
prep |
with,encode |
R6503 |
T10476 |
T10477 |
amod |
rare,exceptions |
R6504 |
T10477 |
T10475 |
pobj |
exceptions,with |
R6505 |
T10478 |
T10470 |
punct |
.,encode |
R6506 |
T10480 |
T10481 |
nsubj |
We,show |
R6507 |
T10482 |
T10483 |
mark |
that,have |
R6508 |
T10483 |
T10481 |
ccomp |
have,show |
R6509 |
T10484 |
T10485 |
amod |
individual,genes |
R6510 |
T10485 |
T10483 |
nsubj |
genes,have |
R6511 |
T10486 |
T10487 |
amod |
olfactory,receptor |
R6512 |
T10487 |
T10485 |
compound |
receptor,genes |
R6513 |
T10488 |
T10483 |
aux |
can,have |
R6514 |
T10489 |
T10490 |
advmod |
vastly,different |
R6515 |
T10490 |
T10491 |
amod |
different,levels |
R6516 |
T10491 |
T10483 |
dobj |
levels,have |
R6517 |
T10492 |
T10491 |
compound |
expression,levels |
R6518 |
T10493 |
T10481 |
punct |
", ",show |
R6519 |
T10494 |
T10495 |
det |
an,finding |
R6520 |
T10495 |
T10481 |
npadvmod |
finding,show |
R6521 |
T10496 |
T10495 |
amod |
intriguing,finding |
R6522 |
T10497 |
T10495 |
prep |
in,finding |
R6523 |
T10498 |
T10497 |
pobj |
light,in |
R6524 |
T10499 |
T10498 |
prep |
of,light |
R6525 |
T10500 |
T10501 |
det |
the,regime |
R6526 |
T10501 |
T10499 |
pobj |
regime,of |
R6527 |
T10502 |
T10501 |
amod |
unusual,regime |
R6528 |
T10503 |
T10504 |
nummod |
one,neuron |
R6529 |
T10504 |
T10501 |
nmod |
neuron,regime |
R6530 |
T10505 |
T10504 |
punct |
-,neuron |
R6531 |
T10506 |
T10507 |
nummod |
one,gene |
R6532 |
T10507 |
T10504 |
appos |
gene,neuron |
R6533 |
T10508 |
T10507 |
punct |
-,gene |
R6534 |
T10509 |
T10501 |
amod |
transcriptional,regime |
R6535 |
T10510 |
T10501 |
prep |
of,regime |
R6536 |
T10511 |
T10512 |
det |
the,epithelium |
R6537 |
T10512 |
T10510 |
pobj |
epithelium,of |
R6538 |
T10513 |
T10512 |
amod |
olfactory,epithelium |
R6539 |
T10514 |
T10481 |
punct |
.,show |
R6540 |
T10516 |
T10517 |
poss |
Our,results |
R6541 |
T10517 |
T10518 |
nsubj |
results,facilitate |
R6542 |
T10519 |
T10517 |
cc |
and,results |
R6543 |
T10520 |
T10521 |
det |
the,sequences |
R6544 |
T10521 |
T10517 |
conj |
sequences,results |
R6545 |
T10522 |
T10523 |
nsubj |
we,provide |
R6546 |
T10523 |
T10521 |
advcl |
provide,sequences |
R6547 |
T10524 |
T10518 |
aux |
will,facilitate |
R6548 |
T10525 |
T10526 |
amod |
future,studies |
R6549 |
T10526 |
T10518 |
dobj |
studies,facilitate |
R6550 |
T10527 |
T10526 |
amod |
global,studies |
R6551 |
T10528 |
T10526 |
prep |
of,studies |
R6552 |
T10529 |
T10530 |
det |
the,mechanisms |
R6553 |
T10530 |
T10528 |
pobj |
mechanisms,of |
R6554 |
T10531 |
T10530 |
cc |
and,mechanisms |
R6555 |
T10532 |
T10530 |
conj |
dynamics,mechanisms |
R6556 |
T10533 |
T10530 |
prep |
of,mechanisms |
R6557 |
T10534 |
T10535 |
amod |
olfactory,receptor |
R6558 |
T10535 |
T10536 |
compound |
receptor,gene |
R6559 |
T10536 |
T10537 |
compound |
gene,expression |
R6560 |
T10537 |
T10533 |
pobj |
expression,of |
R6561 |
T10538 |
T10518 |
punct |
.,facilitate |
R6562 |
T10658 |
T10657 |
prep |
of,Identification |
R6563 |
T10659 |
T10660 |
amod |
olfactory,receptor |
R6564 |
T10660 |
T10661 |
compound |
receptor,cDNAs |
R6565 |
T10661 |
T10658 |
pobj |
cDNAs,of |
R6566 |
T10663 |
T10664 |
det |
An,library |
R6567 |
T10664 |
T10668 |
nsubjpass |
library,provided |
R6568 |
T10665 |
T10666 |
amod |
adult,mouse |
R6569 |
T10666 |
T10667 |
compound |
mouse,cDNA |
R6570 |
T10667 |
T10664 |
compound |
cDNA,library |
R6571 |
T10669 |
T10664 |
acl |
made,library |
R6572 |
T10670 |
T10669 |
prep |
from,made |
R6573 |
T10671 |
T10672 |
det |
the,epithelium |
R6574 |
T10672 |
T10670 |
pobj |
epithelium,from |
R6575 |
T10673 |
T10672 |
amod |
olfactory,epithelium |
R6576 |
T10674 |
T10672 |
prep |
of,epithelium |
R6577 |
T10675 |
T10676 |
det |
a,animal |
R6578 |
T10676 |
T10674 |
pobj |
animal,of |
R6579 |
T10677 |
T10676 |
amod |
single,animal |
R6580 |
T10678 |
T10668 |
auxpass |
was,provided |
R6581 |
T10679 |
T10668 |
agent |
by,provided |
R6582 |
T10680 |
T10681 |
compound |
Leslie,Vosshall |
R6583 |
T10681 |
T10679 |
pobj |
Vosshall,by |
R6584 |
T10682 |
T10683 |
punct |
(,University |
R6585 |
T10683 |
T10681 |
parataxis |
University,Vosshall |
R6586 |
T10684 |
T10683 |
compound |
Rockefeller,University |
R6587 |
T10685 |
T10683 |
punct |
", ",University |
R6588 |
T10686 |
T10687 |
compound |
New,York |
R6589 |
T10687 |
T10683 |
npadvmod |
York,University |
R6590 |
T10688 |
T10683 |
punct |
", ",University |
R6591 |
T10689 |
T10683 |
npadvmod |
NY,University |
R6592 |
T10690 |
T10683 |
punct |
", ",University |
R6593 |
T10691 |
T10683 |
npadvmod |
USA,University |
R6594 |
T10692 |
T10683 |
punct |
),University |
R6595 |
T10693 |
T10668 |
punct |
", ",provided |
R6596 |
T10694 |
T10668 |
cc |
and,provided |
R6597 |
T10695 |
T10696 |
det |
an,library |
R6598 |
T10696 |
T10698 |
nsubjpass |
library,provided |
R6599 |
T10697 |
T10696 |
amod |
embryonic,library |
R6600 |
T10698 |
T10668 |
conj |
provided,provided |
R6601 |
T10699 |
T10696 |
punct |
(,library |
R6602 |
T10700 |
T10696 |
acl |
made,library |
R6603 |
T10701 |
T10700 |
prep |
from,made |
R6604 |
T10702 |
T10703 |
det |
the,epithelia |
R6605 |
T10703 |
T10701 |
pobj |
epithelia,from |
R6606 |
T10704 |
T10703 |
amod |
olfactory,epithelia |
R6607 |
T10705 |
T10703 |
prep |
of,epithelia |
R6608 |
T10706 |
T10707 |
amod |
several,embryos |
R6609 |
T10707 |
T10705 |
pobj |
embryos,of |
R6610 |
T10708 |
T10709 |
compound |
E16.5,E18.5 |
R6611 |
T10709 |
T10707 |
compound |
E18.5,embryos |
R6612 |
T10710 |
T10709 |
punct |
-,E18.5 |
R6613 |
T10711 |
T10698 |
punct |
),provided |
R6614 |
T10712 |
T10698 |
auxpass |
was,provided |
R6615 |
T10713 |
T10698 |
agent |
by,provided |
R6616 |
T10714 |
T10715 |
compound |
Tyler,Cutforth |
R6617 |
T10715 |
T10713 |
pobj |
Cutforth,by |
R6618 |
T10716 |
T10717 |
punct |
(,University |
R6619 |
T10717 |
T10715 |
parataxis |
University,Cutforth |
R6620 |
T10718 |
T10717 |
compound |
Columbia,University |
R6621 |
T10719 |
T10717 |
punct |
", ",University |
R6622 |
T10720 |
T10721 |
compound |
New,York |
R6623 |
T10721 |
T10717 |
npadvmod |
York,University |
R6624 |
T10722 |
T10717 |
punct |
", ",University |
R6625 |
T10723 |
T10717 |
npadvmod |
NY,University |
R6626 |
T10724 |
T10717 |
punct |
", ",University |
R6627 |
T10725 |
T10717 |
npadvmod |
USA,University |
R6628 |
T10726 |
T10717 |
punct |
),University |
R6629 |
T10727 |
T10698 |
punct |
.,provided |
R6630 |
T10729 |
T10730 |
det |
Both,libraries |
R6631 |
T10730 |
T10731 |
nsubjpass |
libraries,primed |
R6632 |
T10732 |
T10731 |
auxpass |
were,primed |
R6633 |
T10733 |
T10731 |
dep |
oligo,primed |
R6634 |
T10734 |
T10731 |
punct |
-,primed |
R6635 |
T10735 |
T10731 |
dep |
dT,primed |
R6636 |
T10736 |
T10731 |
cc |
and,primed |
R6637 |
T10737 |
T10738 |
advmod |
directionally,cloned |
R6638 |
T10738 |
T10731 |
conj |
cloned,primed |
R6639 |
T10739 |
T10738 |
prep |
into,cloned |
R6640 |
T10740 |
T10741 |
det |
the,vector |
R6641 |
T10741 |
T10739 |
pobj |
vector,into |
R6642 |
T10742 |
T10743 |
compound |
lambdaZAP,XR |
R6643 |
T10743 |
T10741 |
compound |
XR,vector |
R6644 |
T10744 |
T10743 |
punct |
-,XR |
R6645 |
T10745 |
T10746 |
punct |
(,Stratagene |
R6646 |
T10746 |
T10741 |
parataxis |
Stratagene,vector |
R6647 |
T10747 |
T10746 |
punct |
", ",Stratagene |
R6648 |
T10748 |
T10749 |
compound |
La,Jolla |
R6649 |
T10749 |
T10746 |
npadvmod |
Jolla,Stratagene |
R6650 |
T10750 |
T10746 |
punct |
", ",Stratagene |
R6651 |
T10751 |
T10746 |
npadvmod |
CA,Stratagene |
R6652 |
T10752 |
T10746 |
punct |
", ",Stratagene |
R6653 |
T10753 |
T10746 |
npadvmod |
USA,Stratagene |
R6654 |
T10754 |
T10746 |
punct |
),Stratagene |
R6655 |
T10755 |
T10731 |
punct |
.,primed |
R6656 |
T10757 |
T10758 |
det |
The,library |
R6657 |
T10758 |
T10760 |
nsubj |
library,has |
R6658 |
T10759 |
T10758 |
amod |
adult,library |
R6659 |
T10761 |
T10762 |
det |
a,complexity |
R6660 |
T10762 |
T10760 |
dobj |
complexity,has |
R6661 |
T10763 |
T10762 |
prep |
of,complexity |
R6662 |
T10764 |
T10765 |
quantmod |
6.5,106 |
R6663 |
T10765 |
T10767 |
nummod |
106,clones |
R6664 |
T10766 |
T10765 |
punct |
×,106 |
R6665 |
T10767 |
T10763 |
pobj |
clones,of |
R6666 |
T10768 |
T10767 |
amod |
primary,clones |
R6667 |
T10769 |
T10760 |
punct |
", ",has |
R6668 |
T10770 |
T10760 |
cc |
and,has |
R6669 |
T10771 |
T10772 |
det |
the,library |
R6670 |
T10772 |
T10774 |
nsubj |
library,has |
R6671 |
T10773 |
T10772 |
amod |
embryonic,library |
R6672 |
T10774 |
T10760 |
conj |
has,has |
R6673 |
T10775 |
T10776 |
det |
a,complexity |
R6674 |
T10776 |
T10774 |
dobj |
complexity,has |
R6675 |
T10777 |
T10776 |
prep |
of,complexity |
R6676 |
T10778 |
T10779 |
quantmod |
1.65,106 |
R6677 |
T10779 |
T10777 |
pobj |
106,of |
R6678 |
T10780 |
T10779 |
punct |
×,106 |
R6679 |
T10781 |
T10774 |
punct |
.,has |
R6680 |
T10783 |
T10784 |
nsubjpass |
Libraries,amplified |
R6681 |
T10785 |
T10784 |
auxpass |
were,amplified |
R6682 |
T10786 |
T10787 |
aux |
to,give |
R6683 |
T10787 |
T10784 |
advcl |
give,amplified |
R6684 |
T10788 |
T10787 |
dobj |
titers,give |
R6685 |
T10789 |
T10788 |
prep |
of,titers |
R6686 |
T10790 |
T10791 |
quantmod |
5,109 |
R6687 |
T10791 |
T10793 |
nummod |
109,pfu |
R6688 |
T10792 |
T10791 |
punct |
×,109 |
R6689 |
T10793 |
T10789 |
pobj |
pfu,of |
R6690 |
T10794 |
T10795 |
punct |
/,ml |
R6691 |
T10795 |
T10793 |
prep |
ml,pfu |
R6692 |
T10796 |
T10797 |
punct |
(,adult |
R6693 |
T10797 |
T10793 |
parataxis |
adult,pfu |
R6694 |
T10798 |
T10797 |
punct |
),adult |
R6695 |
T10799 |
T10793 |
cc |
or,pfu |
R6696 |
T10800 |
T10801 |
quantmod |
2,1010 |
R6697 |
T10801 |
T10803 |
nummod |
1010,pfu |
R6698 |
T10802 |
T10801 |
punct |
×,1010 |
R6699 |
T10803 |
T10793 |
conj |
pfu,pfu |
R6700 |
T10804 |
T10805 |
punct |
/,ml |
R6701 |
T10805 |
T10803 |
prep |
ml,pfu |
R6702 |
T10806 |
T10807 |
punct |
(,embryonic |
R6703 |
T10807 |
T10803 |
parataxis |
embryonic,pfu |
R6704 |
T10808 |
T10807 |
punct |
),embryonic |
R6705 |
T10809 |
T10784 |
punct |
.,amplified |
R6706 |
T10811 |
T10812 |
compound |
Hybridization,probes |
R6707 |
T10812 |
T10813 |
nsubjpass |
probes,made |
R6708 |
T10814 |
T10813 |
auxpass |
were,made |
R6709 |
T10815 |
T10813 |
prep |
by,made |
R6710 |
T10816 |
T10817 |
amod |
degenerate,PCR |
R6711 |
T10817 |
T10815 |
pobj |
PCR,by |
R6712 |
T10818 |
T10817 |
prep |
of,PCR |
R6713 |
T10819 |
T10820 |
nmod |
mouse,DNA |
R6714 |
T10820 |
T10818 |
pobj |
DNA,of |
R6715 |
T10821 |
T10820 |
amod |
genomic,DNA |
R6716 |
T10822 |
T10813 |
punct |
", ",made |
R6717 |
T10823 |
T10813 |
prep |
in,made |
R6718 |
T10824 |
T10825 |
det |
a,fashion |
R6719 |
T10825 |
T10823 |
pobj |
fashion,in |
R6720 |
T10826 |
T10825 |
amod |
similar,fashion |
R6721 |
T10827 |
T10825 |
prep |
to,fashion |
R6722 |
T10828 |
T10827 |
pobj |
those,to |
R6723 |
T10829 |
T10828 |
acl |
described,those |
R6724 |
T10830 |
T10829 |
advmod |
previously,described |
R6725 |
T10831 |
T10832 |
punct |
[,1 |
R6726 |
T10832 |
T10829 |
parataxis |
1,described |
R6727 |
T10833 |
T10832 |
punct |
],1 |
R6728 |
T10834 |
T10813 |
punct |
", ",made |
R6729 |
T10835 |
T10836 |
mark |
with,given |
R6730 |
T10836 |
T10813 |
advcl |
given,made |
R6731 |
T10837 |
T10838 |
compound |
primer,pairs |
R6732 |
T10838 |
T10836 |
nsubj |
pairs,given |
R6733 |
T10839 |
T10838 |
cc |
and,pairs |
R6734 |
T10840 |
T10841 |
amod |
annealing,temperatures |
R6735 |
T10841 |
T10838 |
conj |
temperatures,pairs |
R6736 |
T10842 |
T10836 |
prep |
in,given |
R6737 |
T10843 |
T10842 |
pobj |
Table,in |
R6738 |
T10844 |
T10843 |
nummod |
2,Table |
R6739 |
T10845 |
T10813 |
punct |
.,made |
R6740 |
T10847 |
T10848 |
amod |
Low,stringency |
R6741 |
T10848 |
T10850 |
compound |
stringency,conditions |
R6742 |
T10849 |
T10848 |
punct |
-,stringency |
R6743 |
T10850 |
T10852 |
nsubj |
conditions,were |
R6744 |
T10851 |
T10850 |
compound |
hybridization,conditions |
R6745 |
T10853 |
T10854 |
mark |
as,described |
R6746 |
T10854 |
T10852 |
advcl |
described,were |
R6747 |
T10855 |
T10856 |
punct |
[,1 |
R6748 |
T10856 |
T10854 |
parataxis |
1,described |
R6749 |
T10857 |
T10856 |
punct |
],1 |
R6750 |
T10858 |
T10852 |
punct |
.,were |
R6751 |
T10860 |
T10861 |
advmod |
Clonally,pure |
R6752 |
T10861 |
T10863 |
amod |
pure,plaques |
R6753 |
T10862 |
T10861 |
punct |
-,pure |
R6754 |
T10863 |
T10864 |
nsubjpass |
plaques,obtained |
R6755 |
T10865 |
T10864 |
auxpass |
were,obtained |
R6756 |
T10866 |
T10864 |
prep |
through,obtained |
R6757 |
T10867 |
T10868 |
amod |
secondary,screens |
R6758 |
T10868 |
T10866 |
pobj |
screens,through |
R6759 |
T10869 |
T10864 |
advcl |
using,obtained |
R6760 |
T10870 |
T10871 |
det |
the,probe |
R6761 |
T10871 |
T10869 |
dobj |
probe,using |
R6762 |
T10872 |
T10871 |
amod |
same,probe |
R6763 |
T10873 |
T10871 |
prep |
as,probe |
R6764 |
T10874 |
T10875 |
det |
the,screen |
R6765 |
T10875 |
T10873 |
pobj |
screen,as |
R6766 |
T10876 |
T10875 |
amod |
corresponding,screen |
R6767 |
T10877 |
T10875 |
amod |
primary,screen |
R6768 |
T10878 |
T10864 |
punct |
.,obtained |
R6769 |
T10880 |
T10881 |
nsubjpass |
PCR,performed |
R6770 |
T10882 |
T10880 |
prep |
with,PCR |
R6771 |
T10883 |
T10884 |
compound |
vector,primers |
R6772 |
T10884 |
T10882 |
pobj |
primers,with |
R6773 |
T10885 |
T10886 |
punct |
(,R |
R6774 |
T10886 |
T10880 |
parataxis |
R,PCR |
R6775 |
T10887 |
T10886 |
compound |
M13F,R |
R6776 |
T10888 |
T10886 |
punct |
/,R |
R6777 |
T10889 |
T10886 |
punct |
),R |
R6778 |
T10890 |
T10881 |
auxpass |
was,performed |
R6779 |
T10891 |
T10892 |
aux |
to,prepare |
R6780 |
T10892 |
T10881 |
advcl |
prepare,performed |
R6781 |
T10893 |
T10894 |
compound |
sequencing,templates |
R6782 |
T10894 |
T10892 |
dobj |
templates,prepare |
R6783 |
T10895 |
T10881 |
punct |
.,performed |
R6784 |
T10897 |
T10898 |
compound |
cDNA,size |
R6785 |
T10898 |
T10899 |
compound |
size,estimates |
R6786 |
T10899 |
T10900 |
nsubjpass |
estimates,obtained |
R6787 |
T10901 |
T10900 |
auxpass |
were,obtained |
R6788 |
T10902 |
T10900 |
prep |
by,obtained |
R6789 |
T10903 |
T10904 |
compound |
agarose,gel |
R6790 |
T10904 |
T10905 |
compound |
gel,electrophoresis |
R6791 |
T10905 |
T10902 |
pobj |
electrophoresis,by |
R6792 |
T10906 |
T10900 |
punct |
", ",obtained |
R6793 |
T10907 |
T10900 |
cc |
and,obtained |
R6794 |
T10908 |
T10909 |
nsubjpass |
inserts,sequenced |
R6795 |
T10909 |
T10900 |
conj |
sequenced,obtained |
R6796 |
T10910 |
T10909 |
auxpass |
were,sequenced |
R6797 |
T10911 |
T10909 |
prep |
from,sequenced |
R6798 |
T10912 |
T10913 |
det |
the,end |
R6799 |
T10913 |
T10911 |
pobj |
end,from |
R6800 |
T10914 |
T10913 |
nummod |
5,end |
R6801 |
T10915 |
T10914 |
punct |
',5 |
R6802 |
T10916 |
T10909 |
advcl |
using,sequenced |
R6803 |
T10917 |
T10918 |
det |
the,primer |
R6804 |
T10918 |
T10916 |
dobj |
primer,using |
R6805 |
T10919 |
T10918 |
compound |
M13R,primer |
R6806 |
T10920 |
T10918 |
cc |
and,primer |
R6807 |
T10921 |
T10922 |
amod |
big,dye |
R6808 |
T10922 |
T10924 |
compound |
dye,chemistry |
R6809 |
T10923 |
T10922 |
punct |
-,dye |
R6810 |
T10924 |
T10918 |
conj |
chemistry,primer |
R6811 |
T10925 |
T10924 |
compound |
terminator,chemistry |
R6812 |
T10926 |
T10916 |
prep |
according,using |
R6813 |
T10927 |
T10926 |
prep |
to,according |
R6814 |
T10928 |
T10929 |
poss |
ABI,protocols |
R6815 |
T10929 |
T10927 |
pobj |
protocols,to |
R6816 |
T10930 |
T10928 |
case |
's,ABI |
R6817 |
T10931 |
T10932 |
punct |
(,Biosystems |
R6818 |
T10932 |
T10929 |
parataxis |
Biosystems,protocols |
R6819 |
T10933 |
T10932 |
compound |
Applied,Biosystems |
R6820 |
T10934 |
T10932 |
punct |
", ",Biosystems |
R6821 |
T10935 |
T10936 |
compound |
Foster,City |
R6822 |
T10936 |
T10932 |
npadvmod |
City,Biosystems |
R6823 |
T10937 |
T10932 |
punct |
", ",Biosystems |
R6824 |
T10938 |
T10932 |
npadvmod |
CA,Biosystems |
R6825 |
T10939 |
T10932 |
punct |
", ",Biosystems |
R6826 |
T10940 |
T10932 |
npadvmod |
USA,Biosystems |
R6827 |
T10941 |
T10932 |
punct |
),Biosystems |
R6828 |
T10942 |
T10909 |
punct |
.,sequenced |
R6829 |
T10944 |
T10945 |
prep |
In,converted |
R6830 |
T10946 |
T10944 |
pobj |
order,In |
R6831 |
T10947 |
T10948 |
aux |
to,obtain |
R6832 |
T10948 |
T10946 |
acl |
obtain,order |
R6833 |
T10949 |
T10950 |
nummod |
3,sequence |
R6834 |
T10950 |
T10948 |
dobj |
sequence,obtain |
R6835 |
T10951 |
T10949 |
punct |
',3 |
R6836 |
T10952 |
T10945 |
punct |
", ",converted |
R6837 |
T10953 |
T10954 |
amod |
selected,clones |
R6838 |
T10954 |
T10945 |
nsubjpass |
clones,converted |
R6839 |
T10955 |
T10954 |
compound |
phage,clones |
R6840 |
T10956 |
T10945 |
auxpass |
were,converted |
R6841 |
T10957 |
T10945 |
prep |
to,converted |
R6842 |
T10958 |
T10959 |
compound |
plasmid,stocks |
R6843 |
T10959 |
T10957 |
pobj |
stocks,to |
R6844 |
T10960 |
T10945 |
prep |
following,converted |
R6845 |
T10961 |
T10962 |
det |
a,version |
R6846 |
T10962 |
T10960 |
pobj |
version,following |
R6847 |
T10963 |
T10962 |
amod |
scaled,version |
R6848 |
T10964 |
T10963 |
punct |
-,scaled |
R6849 |
T10965 |
T10963 |
prt |
down,scaled |
R6850 |
T10966 |
T10962 |
prep |
of,version |
R6851 |
T10967 |
T10968 |
poss |
Stratagene,protocol |
R6852 |
T10968 |
T10966 |
pobj |
protocol,of |
R6853 |
T10969 |
T10967 |
case |
's,Stratagene |
R6854 |
T10970 |
T10971 |
advmod |
in,vivo |
R6855 |
T10971 |
T10968 |
amod |
vivo,protocol |
R6856 |
T10972 |
T10968 |
compound |
excision,protocol |
R6857 |
T10973 |
T10945 |
punct |
.,converted |
R6858 |
T10975 |
T10976 |
compound |
Plasmid,DNA |
R6859 |
T10976 |
T10977 |
nsubj |
DNA,gave |
R6860 |
T10978 |
T10979 |
amod |
better,sequence |
R6861 |
T10979 |
T10977 |
dobj |
sequence,gave |
R6862 |
T10980 |
T10981 |
nummod |
3,end |
R6863 |
T10981 |
T10979 |
compound |
end,sequence |
R6864 |
T10982 |
T10980 |
punct |
',3 |
R6865 |
T10983 |
T10981 |
punct |
-,end |
R6866 |
T10984 |
T10979 |
prep |
than,sequence |
R6867 |
T10985 |
T10986 |
compound |
PCR,products |
R6868 |
T10986 |
T10984 |
pobj |
products,than |
R6869 |
T10987 |
T10986 |
punct |
", ",products |
R6870 |
T10988 |
T10989 |
dep |
which,suffered |
R6871 |
T10989 |
T10986 |
relcl |
suffered,products |
R6872 |
T10990 |
T10989 |
advmod |
often,suffered |
R6873 |
T10991 |
T10989 |
prep |
from,suffered |
R6874 |
T10992 |
T10991 |
pobj |
polymerase,from |
R6875 |
T10993 |
T10992 |
amod |
stuttering,polymerase |
R6876 |
T10994 |
T10989 |
prep |
through,suffered |
R6877 |
T10995 |
T10996 |
det |
the,tract |
R6878 |
T10996 |
T10994 |
pobj |
tract,through |
R6879 |
T10997 |
T10996 |
nmod |
poly,tract |
R6880 |
T10998 |
T10997 |
punct |
(,poly |
R6881 |
T10999 |
T10997 |
appos |
A,poly |
R6882 |
T11000 |
T10996 |
punct |
),tract |
R6883 |
T11001 |
T10977 |
punct |
.,gave |
R6884 |
T11003 |
T11004 |
compound |
cDNA,sequences |
R6885 |
T11004 |
T11005 |
nsubj |
sequences,are |
R6886 |
T11006 |
T11004 |
cc |
and,sequences |
R6887 |
T11007 |
T11008 |
amod |
associated,information |
R6888 |
T11008 |
T11004 |
conj |
information,sequences |
R6889 |
T11009 |
T11005 |
acomp |
available,are |
R6890 |
T11010 |
T11005 |
prep |
through,are |
R6891 |
T11011 |
T11010 |
pobj |
dbEST,through |
R6892 |
T11012 |
T11013 |
punct |
(,CB172832 |
R6893 |
T11013 |
T11011 |
parataxis |
CB172832,dbEST |
R6894 |
T11014 |
T11013 |
compound |
Genbank,CB172832 |
R6895 |
T11015 |
T11013 |
compound |
accessions,CB172832 |
R6896 |
T11016 |
T11017 |
punct |
-,CB174569 |
R6897 |
T11017 |
T11013 |
prep |
CB174569,CB172832 |
R6898 |
T11018 |
T11013 |
punct |
),CB172832 |
R6899 |
T11019 |
T11011 |
cc |
and,dbEST |
R6900 |
T11020 |
T11021 |
poss |
our,database |
R6909 |
T11030 |
T11035 |
nsubj |
catalog,is |
R6910 |
T11031 |
T11030 |
amod |
updated,catalog |
R6911 |
T11032 |
T11033 |
amod |
olfactory,receptor |
R6912 |
T11033 |
T11034 |
compound |
receptor,gene |
R6913 |
T11034 |
T11030 |
compound |
gene,catalog |
R6914 |
T11036 |
T11035 |
acomp |
available,is |
R6915 |
T11037 |
T11035 |
prep |
through,is |
R6916 |
T11038 |
T11037 |
pobj |
Genbank,through |
R6917 |
T11039 |
T11040 |
punct |
(,AY317244 |
R6918 |
T11040 |
T11038 |
parataxis |
AY317244,Genbank |
R6919 |
T11041 |
T11040 |
compound |
accessions,AY317244 |
R6920 |
T11042 |
T11043 |
punct |
-,AY318733 |
R6921 |
T11043 |
T11040 |
prep |
AY318733,AY317244 |
R6922 |
T11044 |
T11040 |
punct |
),AY317244 |
R6923 |
T11045 |
T11035 |
punct |
.,is |
R6924 |
T11047 |
T11048 |
prep |
Throughout,referred |
R6925 |
T11049 |
T11050 |
det |
the,manuscript |
R6926 |
T11050 |
T11047 |
pobj |
manuscript,Throughout |
R6927 |
T11051 |
T11048 |
punct |
", ",referred |
R6928 |
T11052 |
T11048 |
nsubjpass |
genes,referred |
R6929 |
T11053 |
T11048 |
auxpass |
are,referred |
R6930 |
T11054 |
T11048 |
prep |
to,referred |
R6931 |
T11055 |
T11048 |
prep |
by,referred |
R6932 |
T11056 |
T11057 |
poss |
their,numbers |
R6933 |
T11057 |
T11055 |
pobj |
numbers,by |
R6934 |
T11058 |
T11057 |
compound |
Genbank,numbers |
R6935 |
T11059 |
T11057 |
compound |
accession,numbers |
R6936 |
T11060 |
T11048 |
punct |
.,referred |
R6937 |
T11276 |
T11277 |
compound |
Sequence,analysis |
R6938 |
T11279 |
T11280 |
compound |
cDNA,sequences |
R6939 |
T11280 |
T11281 |
nsubj |
sequences,called |
R6940 |
T11282 |
T11281 |
aux |
were,called |
R6941 |
T11283 |
T11281 |
dep |
base,called |
R6942 |
T11284 |
T11281 |
punct |
-,called |
R6943 |
T11285 |
T11281 |
cc |
and,called |
R6944 |
T11286 |
T11287 |
dep |
quality,trimmed |
R6945 |
T11287 |
T11281 |
conj |
trimmed,called |
R6946 |
T11288 |
T11287 |
punct |
-,trimmed |
R6947 |
T11289 |
T11281 |
advcl |
using,called |
R6948 |
T11290 |
T11289 |
dobj |
phred,using |
R6949 |
T11291 |
T11292 |
punct |
(,0.05 |
R6950 |
T11292 |
T11281 |
parataxis |
0.05,called |
R6951 |
T11293 |
T11292 |
nsubj |
trim_cutoff,0.05 |
R6952 |
T11294 |
T11292 |
punct |
=,0.05 |
R6953 |
T11295 |
T11292 |
punct |
),0.05 |
R6954 |
T11296 |
T11297 |
punct |
[,47 |
R6955 |
T11297 |
T11281 |
parataxis |
47,called |
R6956 |
T11298 |
T11297 |
punct |
],47 |
R6957 |
T11299 |
T11281 |
punct |
", ",called |
R6958 |
T11300 |
T11281 |
cc |
and,called |
R6959 |
T11301 |
T11302 |
compound |
vector,sequences |
R6960 |
T11302 |
T11303 |
nsubjpass |
sequences,removed |
R6961 |
T11303 |
T11281 |
conj |
removed,called |
R6962 |
T11304 |
T11303 |
auxpass |
were,removed |
R6963 |
T11305 |
T11303 |
advcl |
using,removed |
R6964 |
T11306 |
T11305 |
dobj |
cross_match,using |
R6965 |
T11307 |
T11308 |
punct |
[,48 |
R6966 |
T11308 |
T11303 |
parataxis |
48,removed |
R6967 |
T11309 |
T11308 |
punct |
],48 |
R6968 |
T11310 |
T11303 |
punct |
.,removed |
R6969 |
T11312 |
T11313 |
det |
Any,sequences |
R6970 |
T11313 |
T11314 |
nsubjpass |
sequences,discarded |
R6971 |
T11315 |
T11313 |
prep |
of,sequences |
R6972 |
T11316 |
T11317 |
amod |
less,50 |
R6973 |
T11317 |
T11319 |
nummod |
50,bp |
R6974 |
T11318 |
T11317 |
quantmod |
than,50 |
R6975 |
T11319 |
T11315 |
pobj |
bp,of |
R6976 |
T11320 |
T11319 |
prep |
after,bp |
R6977 |
T11321 |
T11320 |
pobj |
trimming,after |
R6978 |
T11322 |
T11314 |
auxpass |
were,discarded |
R6979 |
T11323 |
T11314 |
punct |
.,discarded |
R6980 |
T11325 |
T11326 |
nummod |
3,UTR |
R6981 |
T11326 |
T11328 |
compound |
UTR,lengths |
R6982 |
T11327 |
T11325 |
punct |
',3 |
R6983 |
T11328 |
T11329 |
nsubjpass |
lengths,estimated |
R6984 |
T11330 |
T11329 |
auxpass |
were,estimated |
R6985 |
T11331 |
T11329 |
prep |
by,estimated |
R6986 |
T11332 |
T11331 |
pcomp |
combining,by |
R6987 |
T11333 |
T11334 |
amod |
approximate,insert |
R6988 |
T11334 |
T11332 |
dobj |
insert,combining |
R6989 |
T11335 |
T11334 |
nmod |
sizes,insert |
R6990 |
T11336 |
T11334 |
acl |
determined,insert |
R6991 |
T11337 |
T11336 |
prep |
by,determined |
R6992 |
T11338 |
T11337 |
pobj |
PCR,by |
R6993 |
T11339 |
T11338 |
prep |
with,PCR |
R6994 |
T11340 |
T11341 |
nummod |
5,sequence |
R6995 |
T11341 |
T11343 |
compound |
sequence,data |
R6996 |
T11342 |
T11340 |
punct |
',5 |
R6997 |
T11343 |
T11339 |
pobj |
data,with |
R6998 |
T11344 |
T11345 |
advmod |
where,possible |
R6999 |
T11345 |
T11336 |
advcl |
possible,determined |
R7000 |
T11346 |
T11347 |
punct |
(,estimate |
R7001 |
T11347 |
T11329 |
parataxis |
estimate,estimated |
R7002 |
T11348 |
T11349 |
mark |
if,extend |
R7003 |
T11349 |
T11347 |
advcl |
extend,estimate |
R7004 |
T11350 |
T11351 |
det |
the,sequence |
R7005 |
T11351 |
T11349 |
nsubj |
sequence,extend |
R7006 |
T11352 |
T11351 |
nummod |
5,sequence |
R7007 |
T11353 |
T11352 |
punct |
',5 |
R7008 |
T11354 |
T11349 |
aux |
did,extend |
R7009 |
T11355 |
T11349 |
neg |
not,extend |
R7010 |
T11356 |
T11349 |
prep |
into,extend |
R7011 |
T11357 |
T11358 |
det |
the,region |
R7012 |
T11358 |
T11356 |
pobj |
region,into |
R7013 |
T11359 |
T11358 |
amod |
coding,region |
R7014 |
T11360 |
T11347 |
nsubj |
we,estimate |
R7015 |
T11361 |
T11347 |
aux |
could,estimate |
R7016 |
T11362 |
T11347 |
neg |
not,estimate |
R7017 |
T11363 |
T11364 |
nummod |
3,UTR |
R7018 |
T11364 |
T11366 |
compound |
UTR,size |
R7019 |
T11365 |
T11363 |
punct |
',3 |
R7020 |
T11366 |
T11347 |
dobj |
size,estimate |
R7021 |
T11367 |
T11347 |
punct |
),estimate |
R7022 |
T11368 |
T11329 |
punct |
.,estimated |
R7023 |
T11370 |
T11371 |
nsubj |
We,counted |
R7024 |
T11371 |
T11372 |
ccomp |
counted,be |
R7025 |
T11373 |
T11371 |
dobj |
cDNAs,counted |
R7026 |
T11374 |
T11373 |
prep |
from,cDNAs |
R7027 |
T11375 |
T11376 |
det |
a,gene |
R7028 |
T11376 |
T11374 |
pobj |
gene,from |
R7029 |
T11377 |
T11376 |
amod |
given,gene |
R7030 |
T11378 |
T11371 |
prep |
as,counted |
R7031 |
T11379 |
T11378 |
pcomp |
showing,as |
R7032 |
T11380 |
T11381 |
amod |
alternative,site |
R7033 |
T11381 |
T11383 |
compound |
site,usage |
R7034 |
T11382 |
T11381 |
compound |
polyadenylation,site |
R7035 |
T11383 |
T11379 |
dobj |
usage,showing |
R7036 |
T11384 |
T11385 |
mark |
if,varied |
R7037 |
T11385 |
T11371 |
advcl |
varied,counted |
R7038 |
T11386 |
T11387 |
nummod |
3,UTR |
R7039 |
T11387 |
T11389 |
compound |
UTR,length |
R7040 |
T11388 |
T11386 |
punct |
',3 |
R7041 |
T11389 |
T11390 |
compound |
length,estimates |
R7042 |
T11390 |
T11385 |
nsubj |
estimates,varied |
R7043 |
T11391 |
T11385 |
prep |
by,varied |
R7044 |
T11392 |
T11393 |
advmod |
at,400 |
R7045 |
T11393 |
T11395 |
nummod |
400,bp |
R7046 |
T11394 |
T11393 |
advmod |
least,400 |
R7047 |
T11395 |
T11391 |
pobj |
bp,by |
R7048 |
T11396 |
T11372 |
punct |
-,be |
R7049 |
T11397 |
T11398 |
amod |
smaller,variation |
R7050 |
T11398 |
T11372 |
nsubj |
variation,be |
R7051 |
T11399 |
T11372 |
aux |
could,be |
R7052 |
T11400 |
T11372 |
acomp |
real,be |
R7053 |
T11401 |
T11372 |
punct |
", ",be |
R7054 |
T11402 |
T11372 |
cc |
but,be |
R7055 |
T11403 |
T11404 |
aux |
may,be |
R7056 |
T11404 |
T11372 |
conj |
be,be |
R7057 |
T11405 |
T11404 |
neg |
not,be |
R7058 |
T11406 |
T11404 |
acomp |
distinguishable,be |
R7059 |
T11407 |
T11406 |
prep |
from,distinguishable |
R7060 |
T11408 |
T11407 |
pobj |
error,from |
R7061 |
T11409 |
T11404 |
prep |
in,be |
R7062 |
T11410 |
T11411 |
poss |
our,estimates |
R7063 |
T11411 |
T11409 |
pobj |
estimates,in |
R7064 |
T11412 |
T11411 |
compound |
size,estimates |
R7065 |
T11413 |
T11372 |
punct |
.,be |
R7066 |
T11415 |
T11416 |
aux |
To,assign |
R7067 |
T11416 |
T11417 |
advcl |
assign,defined |
R7068 |
T11418 |
T11416 |
dobj |
cDNAs,assign |
R7069 |
T11419 |
T11416 |
prep |
to,assign |
R7070 |
T11420 |
T11421 |
poss |
their,genes |
R7071 |
T11421 |
T11419 |
pobj |
genes,to |
R7072 |
T11422 |
T11421 |
amod |
corresponding,genes |
R7073 |
T11423 |
T11424 |
amod |
olfactory,receptor |
R7074 |
T11424 |
T11421 |
compound |
receptor,genes |
R7075 |
T11425 |
T11417 |
punct |
", ",defined |
R7076 |
T11426 |
T11417 |
nsubj |
we,defined |
R7077 |
T11427 |
T11417 |
advmod |
first,defined |
R7078 |
T11428 |
T11429 |
det |
a,territory |
R7079 |
T11429 |
T11417 |
dobj |
territory,defined |
R7080 |
T11430 |
T11429 |
amod |
genomic,territory |
R7081 |
T11431 |
T11429 |
punct |
',territory |
R7082 |
T11432 |
T11429 |
punct |
',territory |
R7083 |
T11433 |
T11429 |
prep |
for,territory |
R7084 |
T11434 |
T11435 |
det |
each,gene |
R7085 |
T11435 |
T11433 |
pobj |
gene,for |
R7086 |
T11436 |
T11429 |
punct |
", ",territory |
R7087 |
T11437 |
T11429 |
prep |
with,territory |
R7088 |
T11438 |
T11439 |
det |
the,attributes |
R7089 |
T11439 |
T11437 |
pobj |
attributes,with |
R7090 |
T11440 |
T11439 |
amod |
following,attributes |
R7091 |
T11441 |
T11439 |
punct |
: ,attributes |
R7092 |
T11442 |
T11439 |
appos |
strand,attributes |
R7093 |
T11443 |
T11442 |
punct |
", ",strand |
R7094 |
T11444 |
T11445 |
compound |
start,position |
R7095 |
T11445 |
T11442 |
conj |
position,strand |
R7096 |
T11446 |
T11447 |
punct |
(,is |
R7097 |
T11447 |
T11445 |
parataxis |
is,position |
R7098 |
T11448 |
T11449 |
nummod |
100,kb |
R7099 |
T11449 |
T11450 |
npadvmod |
kb,upstream |
R7100 |
T11450 |
T11447 |
advmod |
upstream,is |
R7101 |
T11451 |
T11450 |
prep |
of,upstream |
R7102 |
T11452 |
T11453 |
det |
the,codon |
R7103 |
T11453 |
T11451 |
pobj |
codon,of |
R7104 |
T11454 |
T11453 |
compound |
start,codon |
R7105 |
T11455 |
T11450 |
cc |
or,upstream |
R7106 |
T11456 |
T11457 |
nummod |
1,kb |
R7107 |
T11457 |
T11458 |
npadvmod |
kb,after |
R7108 |
T11458 |
T11459 |
prep |
after,upstream |
R7109 |
T11459 |
T11450 |
conj |
upstream,upstream |
R7110 |
T11460 |
T11461 |
det |
the,gene |
R7111 |
T11461 |
T11458 |
pobj |
gene,after |
R7112 |
T11462 |
T11461 |
amod |
previous,gene |
R7113 |
T11463 |
T11459 |
prep |
on,upstream |
R7114 |
T11464 |
T11465 |
det |
the,strand |
R7115 |
T11465 |
T11463 |
pobj |
strand,on |
R7116 |
T11466 |
T11465 |
amod |
same,strand |
R7117 |
T11467 |
T11447 |
punct |
", ",is |
R7118 |
T11468 |
T11447 |
dep |
whichever,is |
R7119 |
T11469 |
T11447 |
acomp |
closer,is |
R7120 |
T11470 |
T11447 |
punct |
),is |
R7121 |
T11471 |
T11445 |
cc |
and,position |
R7122 |
T11472 |
T11473 |
compound |
end,position |
R7123 |
T11473 |
T11445 |
conj |
position,position |
R7124 |
T11474 |
T11475 |
punct |
(,downstream |
R7125 |
T11475 |
T11473 |
parataxis |
downstream,position |
R7126 |
T11476 |
T11477 |
nummod |
1,kb |
R7127 |
T11477 |
T11475 |
npadvmod |
kb,downstream |
R7128 |
T11478 |
T11475 |
prep |
of,downstream |
R7129 |
T11479 |
T11480 |
det |
the,codon |
R7130 |
T11480 |
T11478 |
pobj |
codon,of |
R7131 |
T11481 |
T11480 |
compound |
stop,codon |
R7132 |
T11482 |
T11475 |
punct |
),downstream |
R7133 |
T11483 |
T11417 |
punct |
.,defined |
R7134 |
T11485 |
T11486 |
amod |
Trimmed,sequences |
R7135 |
T11486 |
T11487 |
nsubjpass |
sequences,compared |
R7136 |
T11488 |
T11487 |
auxpass |
were,compared |
R7137 |
T11489 |
T11487 |
prep |
with,compared |
R7138 |
T11490 |
T11491 |
amod |
genomic,sequences |
R7139 |
T11491 |
T11489 |
pobj |
sequences,with |
R7140 |
T11492 |
T11487 |
advcl |
using,compared |
R7141 |
T11493 |
T11492 |
dobj |
sim4,using |
R7142 |
T11494 |
T11495 |
punct |
[,30 |
R7143 |
T11495 |
T11487 |
parataxis |
30,compared |
R7144 |
T11496 |
T11495 |
punct |
],30 |
R7145 |
T11497 |
T11498 |
punct |
(,settings |
R7146 |
T11498 |
T11487 |
parataxis |
settings,compared |
R7147 |
T11499 |
T11500 |
nsubj |
P,1 |
R7148 |
T11500 |
T11498 |
dep |
1,settings |
R7149 |
T11501 |
T11500 |
punct |
=,1 |
R7150 |
T11502 |
T11503 |
aux |
to,remove |
R7151 |
T11503 |
T11500 |
advcl |
remove,1 |
R7152 |
T11504 |
T11505 |
compound |
polyA,tails |
R7153 |
T11505 |
T11503 |
dobj |
tails,remove |
R7154 |
T11506 |
T11500 |
cc |
and,1 |
R7155 |
T11507 |
T11508 |
nsubj |
N,1 |
R7156 |
T11508 |
T11510 |
ccomp |
1,perform |
R7157 |
T11509 |
T11508 |
punct |
=,1 |
R7158 |
T11510 |
T11500 |
conj |
perform,1 |
R7159 |
T11511 |
T11510 |
aux |
to,perform |
R7160 |
T11512 |
T11513 |
det |
an,search |
R7161 |
T11513 |
T11510 |
dobj |
search,perform |
R7162 |
T11514 |
T11513 |
amod |
intensive,search |
R7163 |
T11515 |
T11513 |
prep |
for,search |
R7164 |
T11516 |
T11517 |
amod |
small,exons |
R7165 |
T11517 |
T11515 |
pobj |
exons,for |
R7166 |
T11518 |
T11498 |
punct |
),settings |
R7167 |
T11519 |
T11487 |
punct |
.,compared |
R7168 |
T11521 |
T11522 |
det |
The,algorithm |
R7169 |
T11522 |
T11524 |
nsubj |
algorithm,uses |
R7170 |
T11523 |
T11522 |
compound |
sim4,algorithm |
R7171 |
T11525 |
T11526 |
compound |
splice,site |
R7172 |
T11526 |
T11528 |
compound |
site,sequences |
R7173 |
T11527 |
T11526 |
punct |
-,site |
R7174 |
T11528 |
T11524 |
dobj |
sequences,uses |
R7175 |
T11529 |
T11528 |
compound |
consensus,sequences |
R7176 |
T11530 |
T11531 |
aux |
to,refine |
R7177 |
T11531 |
T11524 |
advcl |
refine,uses |
R7178 |
T11532 |
T11531 |
dep |
alignments,refine |
R7179 |
T11533 |
T11524 |
punct |
.,uses |
R7180 |
T11535 |
T11536 |
advmod |
Only,matches |
R7181 |
T11536 |
T11537 |
nsubjpass |
matches,considered |
R7182 |
T11538 |
T11536 |
prep |
of,matches |
R7183 |
T11539 |
T11540 |
nummod |
96,% |
R7184 |
T11540 |
T11541 |
nmod |
%,identity |
R7185 |
T11541 |
T11538 |
pobj |
identity,of |
R7186 |
T11542 |
T11543 |
cc |
or,greater |
R7187 |
T11543 |
T11540 |
nummod |
greater,% |
R7188 |
T11544 |
T11541 |
compound |
nucleotide,identity |
R7189 |
T11545 |
T11537 |
auxpass |
were,considered |
R7190 |
T11546 |
T11537 |
punct |
.,considered |
R7191 |
T11548 |
T11549 |
amod |
RepeatMasked,sequences |
R7192 |
T11549 |
T11550 |
nsubjpass |
sequences,compared |
R7193 |
T11551 |
T11552 |
punct |
[,49 |
R7194 |
T11552 |
T11549 |
parataxis |
49,sequences |
R7195 |
T11553 |
T11552 |
punct |
],49 |
R7196 |
T11554 |
T11550 |
auxpass |
were,compared |
R7197 |
T11555 |
T11550 |
advmod |
also,compared |
R7198 |
T11556 |
T11550 |
prep |
to,compared |
R7199 |
T11557 |
T11558 |
amod |
genomic,sequences |
R7200 |
T11558 |
T11556 |
pobj |
sequences,to |
R7201 |
T11559 |
T11550 |
punct |
;,compared |
R7202 |
T11560 |
T11561 |
dep |
cDNA,rejected |
R7203 |
T11561 |
T11550 |
dep |
rejected,compared |
R7204 |
T11562 |
T11561 |
punct |
:,rejected |
R7205 |
T11563 |
T11564 |
amod |
genomic,sequence |
R7206 |
T11564 |
T11565 |
compound |
sequence,pairings |
R7207 |
T11565 |
T11561 |
nsubjpass |
pairings,rejected |
R7208 |
T11566 |
T11567 |
neg |
not,found |
R7209 |
T11567 |
T11565 |
acl |
found,pairings |
R7210 |
T11568 |
T11567 |
prep |
in,found |
R7211 |
T11569 |
T11570 |
preconj |
both,masked |
R7212 |
T11570 |
T11571 |
amod |
masked,alignments |
R7213 |
T11571 |
T11568 |
pobj |
alignments,in |
R7214 |
T11572 |
T11570 |
cc |
and,masked |
R7215 |
T11573 |
T11570 |
conj |
unmasked,masked |
R7216 |
T11574 |
T11561 |
auxpass |
were,rejected |
R7217 |
T11575 |
T11550 |
punct |
.,compared |
R7218 |
T11577 |
T11578 |
nsubjpass |
Coordinates,used |
R7219 |
T11579 |
T11577 |
prep |
from,Coordinates |
R7220 |
T11580 |
T11581 |
det |
the,alignment |
R7221 |
T11581 |
T11579 |
pobj |
alignment,from |
R7222 |
T11582 |
T11581 |
amod |
unmasked,alignment |
R7223 |
T11583 |
T11578 |
auxpass |
were,used |
R7224 |
T11584 |
T11578 |
prep |
for,used |
R7225 |
T11585 |
T11586 |
amod |
further,analysis |
R7226 |
T11586 |
T11584 |
pobj |
analysis,for |
R7227 |
T11587 |
T11578 |
punct |
.,used |
R7228 |
T11589 |
T11590 |
det |
Any,sequence |
R7229 |
T11590 |
T11592 |
nsubjpass |
sequence,assigned |
R7230 |
T11591 |
T11590 |
compound |
cDNA,sequence |
R7231 |
T11593 |
T11590 |
acl |
matching,sequence |
R7232 |
T11594 |
T11595 |
advmod |
entirely,within |
R7233 |
T11595 |
T11593 |
prep |
within,matching |
R7234 |
T11596 |
T11597 |
det |
a,territory |
R7235 |
T11597 |
T11595 |
pobj |
territory,within |
R7236 |
T11598 |
T11592 |
auxpass |
was,assigned |
R7237 |
T11599 |
T11592 |
prep |
to,assigned |
R7238 |
T11600 |
T11601 |
det |
that,gene |
R7239 |
T11601 |
T11599 |
pobj |
gene,to |
R7240 |
T11602 |
T11592 |
punct |
.,assigned |
R7241 |
T11604 |
T11605 |
mark |
If,matched |
R7242 |
T11605 |
T11608 |
advcl |
matched,chosen |
R7243 |
T11606 |
T11607 |
det |
a,cDNA |
R7244 |
T11607 |
T11605 |
nsubj |
cDNA,matched |
R7245 |
T11609 |
T11610 |
amod |
more,one |
R7246 |
T11610 |
T11612 |
nummod |
one,territory |
R7247 |
T11611 |
T11610 |
quantmod |
than,one |
R7248 |
T11612 |
T11605 |
dobj |
territory,matched |
R7249 |
T11613 |
T11612 |
compound |
gene,territory |
R7250 |
T11614 |
T11608 |
punct |
", ",chosen |
R7251 |
T11615 |
T11616 |
det |
the,match |
R7252 |
T11616 |
T11608 |
nsubjpass |
match,chosen |
R7253 |
T11617 |
T11616 |
amod |
best,match |
R7254 |
T11618 |
T11608 |
auxpass |
was,chosen |
R7255 |
T11619 |
T11620 |
punct |
(,one |
R7256 |
T11620 |
T11608 |
parataxis |
one,chosen |
R7257 |
T11621 |
T11622 |
advmod |
that,is |
R7258 |
T11622 |
T11620 |
advmod |
is,one |
R7259 |
T11623 |
T11620 |
punct |
", ",one |
R7260 |
T11624 |
T11620 |
det |
the,one |
R7261 |
T11625 |
T11620 |
prep |
with,one |
R7262 |
T11626 |
T11627 |
amod |
highest,score |
R7263 |
T11627 |
T11625 |
pobj |
score,with |
R7264 |
T11628 |
T11627 |
punct |
',score |
R7265 |
T11629 |
T11620 |
punct |
',one |
R7266 |
T11630 |
T11620 |
punct |
", ",one |
R7267 |
T11631 |
T11632 |
advmod |
where,is |
R7268 |
T11632 |
T11620 |
relcl |
is,one |
R7269 |
T11633 |
T11632 |
nsubj |
score,is |
R7270 |
T11634 |
T11635 |
det |
the,total |
R7271 |
T11635 |
T11632 |
attr |
total,is |
R7272 |
T11636 |
T11635 |
prep |
of,total |
R7273 |
T11637 |
T11638 |
det |
all,exons |
R7274 |
T11638 |
T11639 |
poss |
exons,lengths |
R7275 |
T11639 |
T11636 |
pobj |
lengths,of |
R7276 |
T11640 |
T11638 |
case |
',exons |
R7277 |
T11641 |
T11635 |
acl |
multiplied,total |
R7278 |
T11642 |
T11641 |
prep |
by,multiplied |
R7279 |
T11643 |
T11644 |
poss |
their,identities |
R7280 |
T11644 |
T11642 |
pobj |
identities,by |
R7281 |
T11645 |
T11644 |
amod |
respective,identities |
R7282 |
T11646 |
T11644 |
compound |
percent,identities |
R7283 |
T11647 |
T11620 |
punct |
),one |
R7284 |
T11648 |
T11608 |
punct |
.,chosen |
R7285 |
T11650 |
T11651 |
nsubj |
We,flagged |
R7286 |
T11652 |
T11651 |
aux |
found,flagged |
R7287 |
T11653 |
T11654 |
nummod |
27,cDNAs |
R7288 |
T11654 |
T11651 |
dative |
cDNAs,flagged |
R7289 |
T11655 |
T11656 |
dep |
that,spanned |
R7290 |
T11656 |
T11654 |
relcl |
spanned,cDNAs |
R7291 |
T11657 |
T11658 |
det |
a,range |
R7292 |
T11658 |
T11656 |
dobj |
range,spanned |
R7293 |
T11659 |
T11658 |
amod |
larger,range |
R7294 |
T11660 |
T11658 |
amod |
genomic,range |
R7295 |
T11661 |
T11658 |
prep |
than,range |
R7296 |
T11662 |
T11663 |
nummod |
one,territory |
R7297 |
T11663 |
T11661 |
pobj |
territory,than |
R7298 |
T11664 |
T11663 |
compound |
gene,territory |
R7299 |
T11665 |
T11651 |
cc |
and,flagged |
R7300 |
T11666 |
T11651 |
dobj |
them,flagged |
R7301 |
T11667 |
T11651 |
prep |
for,flagged |
R7302 |
T11668 |
T11669 |
advmod |
more,careful |
R7303 |
T11669 |
T11670 |
amod |
careful,analysis |
R7304 |
T11670 |
T11667 |
pobj |
analysis,for |
R7305 |
T11671 |
T11651 |
punct |
.,flagged |
R7306 |
T11673 |
T11674 |
prep |
Of,showed |
R7307 |
T11675 |
T11673 |
pobj |
these,Of |
R7308 |
T11676 |
T11674 |
punct |
", ",showed |
R7309 |
T11677 |
T11678 |
nummod |
six,cDNAs |
R7310 |
T11678 |
T11674 |
nsubj |
cDNAs,showed |
R7311 |
T11679 |
T11680 |
amod |
unusual,splicing |
R7312 |
T11680 |
T11674 |
dobj |
splicing,showed |
R7313 |
T11681 |
T11674 |
prep |
within,showed |
R7314 |
T11682 |
T11683 |
det |
the,UTR |
R7315 |
T11683 |
T11681 |
pobj |
UTR,within |
R7316 |
T11684 |
T11683 |
nummod |
3,UTR |
R7317 |
T11685 |
T11684 |
punct |
',3 |
R7318 |
T11686 |
T11674 |
punct |
", ",showed |
R7319 |
T11687 |
T11674 |
cc |
but,showed |
R7320 |
T11688 |
T11689 |
det |
the,violators |
R7321 |
T11689 |
T11693 |
nsubjpass |
violators,found |
R7322 |
T11690 |
T11689 |
amod |
remaining,violators |
R7323 |
T11691 |
T11689 |
punct |
',violators |
R7324 |
T11692 |
T11689 |
compound |
territory,violators |
R7325 |
T11693 |
T11674 |
conj |
found,showed |
R7326 |
T11694 |
T11693 |
punct |
',found |
R7327 |
T11695 |
T11693 |
auxpass |
were,found |
R7328 |
T11696 |
T11697 |
aux |
to,be |
R7329 |
T11697 |
T11693 |
xcomp |
be,found |
R7330 |
T11698 |
T11697 |
attr |
artifacts,be |
R7331 |
T11699 |
T11698 |
prep |
of,artifacts |
R7332 |
T11700 |
T11701 |
det |
the,process |
R7333 |
T11701 |
T11699 |
pobj |
process,of |
R7334 |
T11702 |
T11701 |
compound |
analysis,process |
R7335 |
T11703 |
T11704 |
dep |
which,fell |
R7336 |
T11704 |
T11698 |
relcl |
fell,artifacts |
R7337 |
T11705 |
T11704 |
prep |
into,fell |
R7338 |
T11706 |
T11707 |
nummod |
three,types |
R7339 |
T11707 |
T11705 |
pobj |
types,into |
R7340 |
T11708 |
T11674 |
punct |
.,showed |
R7341 |
T11710 |
T11711 |
nsubj |
These,included |
R7342 |
T11712 |
T11711 |
punct |
: ,included |
R7343 |
T11713 |
T11711 |
dobj |
cDNAs,included |
R7344 |
T11714 |
T11715 |
advmod |
where,appeared |
R7345 |
T11715 |
T11713 |
relcl |
appeared,cDNAs |
R7346 |
T11716 |
T11717 |
det |
the,insert |
R7347 |
T11717 |
T11715 |
nsubj |
insert,appeared |
R7348 |
T11718 |
T11719 |
aux |
to,cloned |
R7349 |
T11719 |
T11715 |
xcomp |
cloned,appeared |
R7350 |
T11720 |
T11719 |
auxpass |
be,cloned |
R7351 |
T11721 |
T11719 |
prep |
in,cloned |
R7352 |
T11722 |
T11723 |
det |
the,orientation |
R7353 |
T11723 |
T11721 |
pobj |
orientation,in |
R7354 |
T11724 |
T11723 |
amod |
reverse,orientation |
R7355 |
T11725 |
T11726 |
punct |
(,cDNAs |
R7356 |
T11726 |
T11713 |
parataxis |
cDNAs,cDNAs |
R7357 |
T11727 |
T11726 |
nummod |
six,cDNAs |
R7358 |
T11728 |
T11726 |
punct |
),cDNAs |
R7359 |
T11729 |
T11713 |
punct |
;,cDNAs |
R7360 |
T11730 |
T11713 |
conj |
sequences,cDNAs |
R7361 |
T11731 |
T11730 |
prep |
from,sequences |
R7362 |
T11732 |
T11733 |
advmod |
recently,duplicated |
R7363 |
T11733 |
T11734 |
amod |
duplicated,pairs |
R7364 |
T11734 |
T11731 |
pobj |
pairs,from |
R7365 |
T11735 |
T11734 |
compound |
gene,pairs |
R7366 |
T11736 |
T11730 |
punct |
", ",sequences |
R7367 |
T11737 |
T11738 |
advmod |
where,assigned |
R7368 |
T11738 |
T11730 |
relcl |
assigned,sequences |
R7369 |
T11739 |
T11738 |
nsubj |
sim4,assigned |
R7370 |
T11740 |
T11741 |
amod |
coding,region |
R7371 |
T11741 |
T11738 |
dobj |
region,assigned |
R7372 |
T11742 |
T11741 |
cc |
and,region |
R7373 |
T11743 |
T11744 |
amod |
upstream,exons |
R7374 |
T11744 |
T11741 |
conj |
exons,region |
R7375 |
T11745 |
T11738 |
prep |
to,assigned |
R7376 |
T11746 |
T11747 |
amod |
different,members |
R7377 |
T11747 |
T11745 |
pobj |
members,to |
R7378 |
T11748 |
T11747 |
prep |
of,members |
R7379 |
T11749 |
T11750 |
det |
the,pair |
R7380 |
T11750 |
T11748 |
pobj |
pair,of |
R7381 |
T11751 |
T11738 |
punct |
", ",assigned |
R7382 |
T11752 |
T11753 |
mark |
although,aligned |
R7383 |
T11753 |
T11738 |
advcl |
aligned,assigned |
R7384 |
T11754 |
T11753 |
nsubjpass |
exons,aligned |
R7385 |
T11755 |
T11753 |
aux |
could,aligned |
R7386 |
T11756 |
T11757 |
advmod |
equally,well |
R7387 |
T11757 |
T11753 |
advmod |
well,aligned |
R7388 |
T11758 |
T11753 |
aux |
have,aligned |
R7389 |
T11759 |
T11753 |
auxpass |
been,aligned |
R7390 |
T11760 |
T11753 |
advmod |
closer,aligned |
R7391 |
T11761 |
T11760 |
prep |
to,closer |
R7392 |
T11762 |
T11761 |
pobj |
one,to |
R7393 |
T11763 |
T11762 |
det |
another,one |
R7394 |
T11764 |
T11765 |
punct |
(,cDNAs |
R7395 |
T11765 |
T11730 |
parataxis |
cDNAs,sequences |
R7396 |
T11766 |
T11765 |
nummod |
six,cDNAs |
R7397 |
T11767 |
T11765 |
punct |
),cDNAs |
R7398 |
T11768 |
T11730 |
punct |
;,sequences |
R7399 |
T11769 |
T11730 |
cc |
and,sequences |
R7400 |
T11770 |
T11730 |
conj |
artifacts,sequences |
R7401 |
T11771 |
T11770 |
prep |
due,artifacts |
R7402 |
T11772 |
T11771 |
pcomp |
to,due |
R7403 |
T11773 |
T11771 |
pobj |
use,due |
R7404 |
T11774 |
T11773 |
prep |
of,use |
R7405 |
T11775 |
T11776 |
poss |
sim4,parameter |
R7406 |
T11776 |
T11774 |
pobj |
parameter,of |
R7407 |
T11777 |
T11775 |
case |
's,sim4 |
R7408 |
T11778 |
T11779 |
nsubj |
N,1 |
R7409 |
T11779 |
T11776 |
nummod |
1,parameter |
R7410 |
T11780 |
T11779 |
punct |
=,1 |
R7411 |
T11781 |
T11782 |
punct |
(,cDNAs |
R7412 |
T11782 |
T11770 |
parataxis |
cDNAs,artifacts |
R7413 |
T11783 |
T11782 |
nummod |
nine,cDNAs |
R7414 |
T11784 |
T11782 |
punct |
),cDNAs |
R7415 |
T11785 |
T11711 |
punct |
.,included |
R7416 |
T11787 |
T11788 |
det |
This,parameter |
R7417 |
T11788 |
T11789 |
nsubj |
parameter,instructs |
R7418 |
T11790 |
T11791 |
det |
the,program |
R7419 |
T11791 |
T11789 |
dobj |
program,instructs |
R7420 |
T11792 |
T11793 |
aux |
to,make |
R7421 |
T11793 |
T11789 |
xcomp |
make,instructs |
R7422 |
T11794 |
T11795 |
amod |
extra,effort |
R7423 |
T11795 |
T11793 |
dobj |
effort,make |
R7424 |
T11796 |
T11797 |
aux |
to,match |
R7425 |
T11797 |
T11795 |
acl |
match,effort |
R7426 |
T11798 |
T11799 |
amod |
small,exons |
R7427 |
T11799 |
T11797 |
dobj |
exons,match |
R7428 |
T11800 |
T11799 |
amod |
upstream,exons |
R7429 |
T11801 |
T11789 |
punct |
", ",instructs |
R7430 |
T11802 |
T11789 |
advcl |
allowing,instructs |
R7431 |
T11803 |
T11804 |
det |
a,length |
R7432 |
T11804 |
T11807 |
nsubjpass |
length,matched |
R7433 |
T11805 |
T11804 |
amod |
greater,length |
R7434 |
T11806 |
T11804 |
amod |
total,length |
R7435 |
T11807 |
T11802 |
ccomp |
matched,allowing |
R7436 |
T11808 |
T11804 |
prep |
of,length |
R7437 |
T11809 |
T11810 |
compound |
EST,sequence |
R7438 |
T11810 |
T11808 |
pobj |
sequence,of |
R7439 |
T11811 |
T11807 |
aux |
to,matched |
R7440 |
T11812 |
T11807 |
auxpass |
be,matched |
R7441 |
T11813 |
T11789 |
punct |
.,instructs |
R7442 |
T11815 |
T11816 |
advmod |
However,caused |
R7443 |
T11817 |
T11816 |
punct |
", ",caused |
R7444 |
T11818 |
T11816 |
advmod |
occasionally,caused |
R7445 |
T11819 |
T11820 |
det |
the,parameter |
R7446 |
T11820 |
T11816 |
nsubj |
parameter,caused |
R7447 |
T11821 |
T11822 |
nsubj |
N,1 |
R7448 |
T11822 |
T11820 |
nummod |
1,parameter |
R7449 |
T11823 |
T11822 |
punct |
=,1 |
R7450 |
T11824 |
T11825 |
det |
the,program |
R7451 |
T11825 |
T11826 |
nsubj |
program,assign |
R7452 |
T11826 |
T11816 |
ccomp |
assign,caused |
R7453 |
T11827 |
T11826 |
aux |
to,assign |
R7454 |
T11828 |
T11829 |
advmod |
very,small |
R7455 |
T11829 |
T11830 |
amod |
small,sequences |
R7456 |
T11830 |
T11826 |
dobj |
sequences,assign |
R7457 |
T11831 |
T11832 |
punct |
(,bp |
R7458 |
T11832 |
T11830 |
parataxis |
bp,sequences |
R7459 |
T11833 |
T11834 |
compound |
1,4 |
R7460 |
T11834 |
T11832 |
nummod |
4,bp |
R7461 |
T11835 |
T11834 |
punct |
-,4 |
R7462 |
T11836 |
T11832 |
punct |
),bp |
R7463 |
T11837 |
T11826 |
prep |
to,assign |
R7464 |
T11838 |
T11839 |
amod |
distant,exons |
R7465 |
T11839 |
T11837 |
pobj |
exons,to |
R7466 |
T11840 |
T11839 |
amod |
upstream,exons |
R7467 |
T11841 |
T11826 |
punct |
", ",assign |
R7468 |
T11842 |
T11843 |
advmod |
when,match |
R7469 |
T11843 |
T11826 |
advcl |
match,assign |
R7470 |
T11844 |
T11843 |
nsubj |
they,match |
R7471 |
T11845 |
T11843 |
advmod |
probably,match |
R7472 |
T11846 |
T11843 |
advmod |
nearer,match |
R7473 |
T11847 |
T11846 |
prep |
to,nearer |
R7474 |
T11848 |
T11849 |
det |
the,sequence |
R7475 |
T11849 |
T11847 |
pobj |
sequence,to |
R7476 |
T11850 |
T11849 |
amod |
corresponding,sequence |
R7477 |
T11851 |
T11849 |
compound |
coding,sequence |
R7478 |
T11852 |
T11816 |
punct |
.,caused |
R7479 |
T11854 |
T11855 |
det |
The,distribution |
R7480 |
T11855 |
T11857 |
nsubjpass |
distribution,calculated |
R7481 |
T11856 |
T11855 |
amod |
expected,distribution |
R7482 |
T11858 |
T11855 |
acl |
shown,distribution |
R7483 |
T11859 |
T11858 |
prep |
in,shown |
R7484 |
T11860 |
T11859 |
pobj |
Figure,in |
R7485 |
T11861 |
T11860 |
nummod |
2,Figure |
R7486 |
T11862 |
T11857 |
auxpass |
was,calculated |
R7487 |
T11863 |
T11857 |
advcl |
using,calculated |
R7488 |
T11864 |
T11865 |
det |
the,equation |
R7489 |
T11865 |
T11863 |
dobj |
equation,using |
R7490 |
T11866 |
T11867 |
nmod |
P,x |
R7491 |
T11867 |
T11869 |
nsubj |
x,μμx |
R7492 |
T11868 |
T11867 |
punct |
(,x |
R7493 |
T11869 |
T11865 |
appos |
μμx,equation |
R7494 |
T11870 |
T11867 |
punct |
),x |
R7495 |
T11871 |
T11869 |
punct |
=,μμx |
R7496 |
T11872 |
T11869 |
nmod |
e,μμx |
R7497 |
T11873 |
T11869 |
punct |
-,μμx |
R7498 |
T11874 |
T11875 |
punct |
/,x |
R7499 |
T11875 |
T11869 |
prep |
x,μμx |
R7500 |
T11876 |
T11875 |
punct |
!,x |
R7501 |
T11877 |
T11865 |
punct |
", ",equation |
R7502 |
T11878 |
T11879 |
advmod |
where,is |
R7503 |
T11879 |
T11865 |
relcl |
is,equation |
R7504 |
T11880 |
T11881 |
nmod |
P,x |
R7505 |
T11881 |
T11879 |
nsubj |
x,is |
R7506 |
T11882 |
T11881 |
punct |
(,x |
R7507 |
T11883 |
T11881 |
punct |
),x |
R7508 |
T11884 |
T11885 |
det |
the,probability |
R7509 |
T11885 |
T11879 |
attr |
probability,is |
R7510 |
T11886 |
T11885 |
compound |
Poisson,probability |
R7511 |
T11887 |
T11885 |
prep |
of,probability |
R7512 |
T11888 |
T11887 |
pcomp |
observing,of |
R7513 |
T11889 |
T11890 |
compound |
x,cDNAs |
R7514 |
T11890 |
T11888 |
dobj |
cDNAs,observing |
R7515 |
T11891 |
T11890 |
prep |
per,cDNAs |
R7516 |
T11892 |
T11891 |
pobj |
gene,per |
R7517 |
T11893 |
T11879 |
punct |
", ",is |
R7518 |
T11894 |
T11879 |
cc |
and,is |
R7519 |
T11895 |
T11896 |
nsubj |
μ,is |
R7520 |
T11896 |
T11879 |
conj |
is,is |
R7521 |
T11897 |
T11898 |
det |
the,number |
R7522 |
T11898 |
T11896 |
attr |
number,is |
R7523 |
T11899 |
T11898 |
amod |
mean,number |
R7524 |
T11900 |
T11898 |
prep |
of,number |
R7525 |
T11901 |
T11900 |
pobj |
cDNAs,of |
R7526 |
T11902 |
T11901 |
acl |
observed,cDNAs |
R7527 |
T11903 |
T11902 |
prep |
per,observed |
R7528 |
T11904 |
T11903 |
pobj |
gene,per |
R7529 |
T11905 |
T11906 |
punct |
(,cDNAs |
R7530 |
T11906 |
T11896 |
parataxis |
cDNAs,is |
R7531 |
T11907 |
T11908 |
nsubj |
μ,1 |
R7532 |
T11908 |
T11906 |
ccomp |
1,cDNAs |
R7533 |
T11909 |
T11908 |
punct |
=,1 |
R7534 |
T11910 |
T11906 |
punct |
",",cDNAs |
R7535 |
T11911 |
T11912 |
nummod |
176,983 |
R7536 |
T11912 |
T11906 |
dep |
983,cDNAs |
R7537 |
T11913 |
T11912 |
punct |
/,983 |
R7538 |
T11914 |
T11906 |
punct |
: ,cDNAs |
R7539 |
T11915 |
T11906 |
nummod |
"1,176",cDNAs |
R7540 |
T11916 |
T11906 |
acl |
matching,cDNAs |
R7541 |
T11917 |
T11918 |
amod |
olfactory,receptor |
R7542 |
T11918 |
T11919 |
compound |
receptor,genes |
R7543 |
T11919 |
T11916 |
dobj |
genes,matching |
R7544 |
T11920 |
T11916 |
prep |
in,matching |
R7545 |
T11921 |
T11922 |
poss |
our,dataset |
R7546 |
T11922 |
T11920 |
pobj |
dataset,in |
R7547 |
T11923 |
T11906 |
cc |
and,cDNAs |
R7548 |
T11924 |
T11925 |
nummod |
983,receptors |
R7549 |
T11925 |
T11906 |
conj |
receptors,cDNAs |
R7550 |
T11926 |
T11925 |
amod |
intact,receptors |
R7551 |
T11927 |
T11925 |
nmod |
class,receptors |
R7552 |
T11928 |
T11927 |
nummod |
II,class |
R7553 |
T11929 |
T11925 |
amod |
olfactory,receptors |
R7554 |
T11930 |
T11906 |
punct |
),cDNAs |
R7555 |
T11931 |
T11857 |
punct |
.,calculated |
R7556 |
T11933 |
T11934 |
prep |
In,ignored |
R7557 |
T11935 |
T11936 |
poss |
our,analysis |
R7558 |
T11936 |
T11933 |
pobj |
analysis,In |
R7559 |
T11937 |
T11936 |
prep |
of,analysis |
R7560 |
T11938 |
T11939 |
amod |
expressed,pseudogenes |
R7561 |
T11939 |
T11937 |
pobj |
pseudogenes,of |
R7562 |
T11940 |
T11934 |
punct |
", ",ignored |
R7563 |
T11941 |
T11934 |
nsubj |
we,ignored |
R7564 |
T11942 |
T11943 |
nummod |
two,pseudogenes |
R7565 |
T11943 |
T11934 |
dobj |
pseudogenes,ignored |
R7566 |
T11944 |
T11945 |
amod |
olfactory,receptor |
R7567 |
T11945 |
T11943 |
compound |
receptor,pseudogenes |
R7568 |
T11946 |
T11943 |
acl |
found,pseudogenes |
R7569 |
T11947 |
T11946 |
advmod |
very,found |
R7570 |
T11948 |
T11947 |
advmod |
near,very |
R7571 |
T11949 |
T11950 |
det |
the,ends |
R7572 |
T11950 |
T11947 |
npadvmod |
ends,very |
R7573 |
T11951 |
T11950 |
prep |
of,ends |
R7574 |
T11952 |
T11953 |
amod |
genomic,sequences |
R7575 |
T11953 |
T11951 |
pobj |
sequences,of |
R7576 |
T11954 |
T11946 |
cc |
and,found |
R7577 |
T11955 |
T11956 |
advmod |
thus,likely |
R7578 |
T11956 |
T11946 |
conj |
likely,found |
R7579 |
T11957 |
T11958 |
aux |
to,be |
R7580 |
T11958 |
T11956 |
xcomp |
be,likely |
R7581 |
T11959 |
T11960 |
npadvmod |
error,prone |
R7582 |
T11960 |
T11958 |
acomp |
prone,be |
R7583 |
T11961 |
T11960 |
punct |
-,prone |
R7584 |
T11962 |
T11934 |
punct |
.,ignored |
R7585 |
T11964 |
T11965 |
det |
A,alignment |
R7586 |
T11965 |
T11968 |
nsubjpass |
alignment,generated |
R7587 |
T11966 |
T11967 |
compound |
protein,sequence |
R7588 |
T11967 |
T11965 |
compound |
sequence,alignment |
R7589 |
T11969 |
T11965 |
prep |
of,alignment |
R7590 |
T11970 |
T11971 |
amod |
intact,receptors |
R7591 |
T11971 |
T11969 |
pobj |
receptors,of |
R7592 |
T11972 |
T11971 |
nmod |
mouse,receptors |
R7593 |
T11973 |
T11971 |
amod |
olfactory,receptors |
R7594 |
T11974 |
T11968 |
auxpass |
was,generated |
R7595 |
T11975 |
T11968 |
advcl |
using,generated |
R7596 |
T11976 |
T11975 |
dobj |
CLUSTALW,using |
R7597 |
T11977 |
T11978 |
punct |
[,50 |
R7598 |
T11978 |
T11975 |
parataxis |
50,using |
R7599 |
T11979 |
T11978 |
punct |
],50 |
R7600 |
T11980 |
T11968 |
punct |
", ",generated |
R7601 |
T11981 |
T11968 |
conj |
edited,generated |
R7602 |
T11982 |
T11981 |
prep |
by,edited |
R7603 |
T11983 |
T11982 |
pobj |
hand,by |
R7604 |
T11984 |
T11981 |
punct |
", ",edited |
R7605 |
T11985 |
T11981 |
cc |
and,edited |
R7606 |
T11986 |
T11981 |
conj |
used,edited |
R7607 |
T11987 |
T11988 |
aux |
to,produce |
R7608 |
T11988 |
T11986 |
advcl |
produce,used |
R7609 |
T11989 |
T11990 |
det |
the,tree |
R7610 |
T11990 |
T11988 |
dobj |
tree,produce |
R7611 |
T11991 |
T11990 |
amod |
phylogenetic,tree |
R7612 |
T11992 |
T11990 |
acl |
shown,tree |
R7613 |
T11993 |
T11992 |
prep |
in,shown |
R7614 |
T11994 |
T11993 |
pobj |
Figure,in |
R7615 |
T11995 |
T11994 |
nummod |
1,Figure |
R7616 |
T11996 |
T11988 |
advcl |
using,produce |
R7617 |
T11997 |
T11998 |
poss |
PAUP,algorithm |
R7618 |
T11998 |
T11996 |
dobj |
algorithm,using |
R7619 |
T11999 |
T11997 |
case |
's,PAUP |
R7620 |
T12000 |
T12001 |
npadvmod |
neighbor,joining |
R7621 |
T12001 |
T11998 |
amod |
joining,algorithm |
R7622 |
T12002 |
T12001 |
punct |
-,joining |
R7623 |
T12003 |
T12004 |
punct |
(,Associates |
R7624 |
T12004 |
T11988 |
parataxis |
Associates,produce |
R7625 |
T12005 |
T12006 |
compound |
v4.0b6,Version |
R7626 |
T12006 |
T12004 |
dep |
Version,Associates |
R7627 |
T12007 |
T12006 |
nummod |
4,Version |
R7628 |
T12008 |
T12004 |
punct |
", ",Associates |
R7629 |
T12009 |
T12004 |
compound |
Sinauer,Associates |
R7630 |
T12010 |
T12004 |
punct |
", ",Associates |
R7631 |
T12011 |
T12004 |
npadvmod |
Sunderland,Associates |
R7632 |
T12012 |
T12004 |
punct |
", ",Associates |
R7633 |
T12013 |
T12004 |
npadvmod |
MA,Associates |
R7634 |
T12014 |
T12004 |
punct |
),Associates |
R7635 |
T12015 |
T11968 |
punct |
.,generated |
R7636 |
T12017 |
T12018 |
det |
The,tree |
R7637 |
T12018 |
T12019 |
nsubjpass |
tree,colored |
R7638 |
T12020 |
T12019 |
auxpass |
was,colored |
R7639 |
T12021 |
T12019 |
advcl |
using,colored |
R7640 |
T12022 |
T12023 |
det |
a,script |
R7641 |
T12023 |
T12021 |
dobj |
script,using |
R7642 |
T12024 |
T12023 |
compound |
custom,script |
R7643 |
T12025 |
T12019 |
punct |
.,colored |
R7644 |
T12027 |
T12028 |
compound |
Information,content |
R7645 |
T12028 |
T12029 |
nsubjpass |
content,calculated |
R7646 |
T12030 |
T12028 |
punct |
(,content |
R7647 |
T12031 |
T12032 |
det |
the,measure |
R7648 |
T12032 |
T12028 |
appos |
measure,content |
R7649 |
T12033 |
T12032 |
prep |
of,measure |
R7650 |
T12034 |
T12035 |
compound |
sequence,conservation |
R7651 |
T12035 |
T12033 |
pobj |
conservation,of |
R7652 |
T12036 |
T12035 |
acl |
shown,conservation |
R7653 |
T12037 |
T12036 |
prep |
in,shown |
R7654 |
T12038 |
T12037 |
pobj |
Figure,in |
R7655 |
T12039 |
T12038 |
nummod |
6,Figure |
R7656 |
T12040 |
T12029 |
punct |
),calculated |
R7657 |
T12041 |
T12029 |
auxpass |
was,calculated |
R7658 |
T12042 |
T12029 |
prep |
for,calculated |
R7659 |
T12043 |
T12044 |
det |
each,position |
R7660 |
T12044 |
T12042 |
pobj |
position,for |
R7661 |
T12045 |
T12044 |
prep |
in,position |
R7662 |
T12046 |
T12047 |
det |
the,alignment |
R7663 |
T12047 |
T12045 |
pobj |
alignment,in |
R7664 |
T12048 |
T12029 |
advcl |
using,calculated |
R7665 |
T12049 |
T12048 |
dobj |
alpro,using |
R7666 |
T12050 |
T12051 |
punct |
[,51 |
R7667 |
T12051 |
T12029 |
parataxis |
51,calculated |
R7668 |
T12052 |
T12051 |
punct |
],51 |
R7669 |
T12053 |
T12029 |
punct |
.,calculated |
R7670 |
T12055 |
T12056 |
aux |
To,determine |
R7671 |
T12056 |
T12057 |
advcl |
determine,examined |
R7672 |
T12058 |
T12059 |
det |
the,number |
R7673 |
T12059 |
T12056 |
dobj |
number,determine |
R7674 |
T12060 |
T12059 |
prep |
of,number |
R7675 |
T12061 |
T12062 |
amod |
transcriptional,isoforms |
R7676 |
T12062 |
T12060 |
pobj |
isoforms,of |
R7677 |
T12063 |
T12056 |
prep |
for,determine |
R7678 |
T12064 |
T12065 |
det |
each,gene |
R7679 |
T12065 |
T12063 |
pobj |
gene,for |
R7680 |
T12066 |
T12057 |
punct |
", ",examined |
R7681 |
T12067 |
T12057 |
nsubj |
we,examined |
R7682 |
T12068 |
T12069 |
det |
the,output |
R7683 |
T12069 |
T12057 |
dobj |
output,examined |
R7684 |
T12070 |
T12069 |
compound |
sim4,output |
R7685 |
T12071 |
T12057 |
prep |
for,examined |
R7686 |
T12072 |
T12073 |
det |
every,cDNA |
R7687 |
T12073 |
T12071 |
pobj |
cDNA,for |
R7688 |
T12074 |
T12073 |
amod |
matching,cDNA |
R7689 |
T12075 |
T12057 |
prep |
in,examined |
R7690 |
T12076 |
T12077 |
amod |
decreasing,order |
R7691 |
T12077 |
T12075 |
pobj |
order,in |
R7692 |
T12078 |
T12077 |
prep |
of,order |
R7693 |
T12079 |
T12078 |
pobj |
number,of |
R7694 |
T12080 |
T12079 |
prep |
of,number |
R7695 |
T12081 |
T12080 |
pobj |
exons,of |
R7696 |
T12082 |
T12057 |
punct |
.,examined |
R7697 |
T12084 |
T12085 |
det |
The,cDNA |
R7698 |
T12085 |
T12087 |
nsubjpass |
cDNA,counted |
R7699 |
T12086 |
T12085 |
amod |
first,cDNA |
R7700 |
T12088 |
T12087 |
auxpass |
was,counted |
R7701 |
T12089 |
T12087 |
prep |
as,counted |
R7702 |
T12090 |
T12091 |
nummod |
one,form |
R7703 |
T12091 |
T12089 |
pobj |
form,as |
R7704 |
T12092 |
T12091 |
compound |
splice,form |
R7705 |
T12093 |
T12087 |
punct |
", ",counted |
R7706 |
T12094 |
T12087 |
cc |
and,counted |
R7707 |
T12095 |
T12096 |
prep |
for,determined |
R7708 |
T12096 |
T12087 |
conj |
determined,counted |
R7709 |
T12097 |
T12098 |
det |
each,cDNA |
R7710 |
T12098 |
T12095 |
pobj |
cDNA,for |
R7711 |
T12099 |
T12098 |
amod |
subsequent,cDNA |
R7712 |
T12100 |
T12096 |
punct |
", ",determined |
R7713 |
T12101 |
T12096 |
nsubj |
we,determined |
R7714 |
T12102 |
T12103 |
mark |
whether,was |
R7715 |
T12103 |
T12096 |
ccomp |
was,determined |
R7716 |
T12104 |
T12105 |
compound |
exon,structure |
R7717 |
T12105 |
T12103 |
nsubj |
structure,was |
R7718 |
T12106 |
T12107 |
advmod |
mutually,exclusive |
R7719 |
T12107 |
T12103 |
acomp |
exclusive,was |
R7720 |
T12108 |
T12107 |
prep |
to,exclusive |
R7721 |
T12109 |
T12108 |
pobj |
isoforms,to |
R7722 |
T12110 |
T12111 |
advmod |
already,counted |
R7723 |
T12111 |
T12109 |
acl |
counted,isoforms |
R7724 |
T12112 |
T12096 |
punct |
.,determined |
R7725 |
T12114 |
T12115 |
nsubj |
We,were |
R7726 |
T12116 |
T12115 |
acomp |
conservative,were |
R7727 |
T12117 |
T12115 |
prep |
in,were |
R7728 |
T12118 |
T12119 |
poss |
our,definition |
R7729 |
T12119 |
T12117 |
pobj |
definition,in |
R7730 |
T12120 |
T12119 |
prep |
of,definition |
R7731 |
T12121 |
T12122 |
advmod |
mutually,exclusive |
R7732 |
T12122 |
T12120 |
pobj |
exclusive,of |
R7733 |
T12123 |
T12115 |
punct |
", ",were |
R7734 |
T12124 |
T12115 |
cc |
and,were |
R7735 |
T12125 |
T12126 |
advmod |
thus,represents |
R7736 |
T12126 |
T12115 |
conj |
represents,were |
R7737 |
T12127 |
T12128 |
poss |
our,count |
R7738 |
T12128 |
T12126 |
nsubj |
count,represents |
R7739 |
T12129 |
T12130 |
det |
the,number |
R7740 |
T12130 |
T12126 |
dobj |
number,represents |
R7741 |
T12131 |
T12130 |
amod |
minimum,number |
R7742 |
T12132 |
T12130 |
prep |
of,number |
R7743 |
T12133 |
T12132 |
pobj |
isoforms,of |
R7744 |
T12134 |
T12133 |
acl |
represented,isoforms |
R7745 |
T12135 |
T12134 |
prep |
in,represented |
R7746 |
T12136 |
T12137 |
det |
the,collection |
R7747 |
T12137 |
T12135 |
pobj |
collection,in |
R7748 |
T12138 |
T12137 |
compound |
cDNA,collection |
R7749 |
T12139 |
T12126 |
punct |
.,represents |
R7750 |
T12269 |
T12270 |
compound |
RT,PCR |
R7751 |
T12271 |
T12270 |
punct |
-,PCR |
R7752 |
T12273 |
T12274 |
det |
The,epithelia |
R7753 |
T12274 |
T12276 |
nsubjpass |
epithelia,dissected |
R7754 |
T12275 |
T12274 |
amod |
olfactory,epithelia |
R7755 |
T12277 |
T12276 |
auxpass |
were,dissected |
R7756 |
T12278 |
T12276 |
prep |
from,dissected |
R7757 |
T12279 |
T12280 |
nummod |
three,mice |
R7758 |
T12280 |
T12278 |
pobj |
mice,from |
R7759 |
T12281 |
T12280 |
amod |
adult,mice |
R7760 |
T12282 |
T12280 |
amod |
female,mice |
R7761 |
T12283 |
T12280 |
nmod |
C57BL,mice |
R7762 |
T12284 |
T12283 |
punct |
/,C57BL |
R7763 |
T12285 |
T12283 |
nummod |
6,C57BL |
R7764 |
T12286 |
T12276 |
punct |
", ",dissected |
R7765 |
T12287 |
T12276 |
prep |
including,dissected |
R7766 |
T12288 |
T12287 |
pobj |
tissues,including |
R7767 |
T12289 |
T12288 |
acl |
attached,tissues |
R7768 |
T12290 |
T12289 |
prep |
to,attached |
R7769 |
T12291 |
T12292 |
det |
the,skull |
R7770 |
T12292 |
T12290 |
pobj |
skull,to |
R7771 |
T12293 |
T12292 |
cc |
and,skull |
R7772 |
T12294 |
T12292 |
conj |
septum,skull |
R7773 |
T12295 |
T12276 |
punct |
.,dissected |
R7774 |
T12297 |
T12298 |
nsubjpass |
RNA,isolated |
R7775 |
T12299 |
T12298 |
auxpass |
was,isolated |
R7776 |
T12300 |
T12298 |
advcl |
using,isolated |
R7777 |
T12301 |
T12302 |
det |
the,kit |
R7778 |
T12302 |
T12300 |
dobj |
kit,using |
R7779 |
T12303 |
T12302 |
compound |
Qiagen,kit |
R7780 |
T12304 |
T12302 |
compound |
RNeasy,kit |
R7781 |
T12305 |
T12302 |
compound |
midi,kit |
R7782 |
T12306 |
T12307 |
punct |
(,Qiagen |
R7783 |
T12307 |
T12302 |
parataxis |
Qiagen,kit |
R7784 |
T12308 |
T12307 |
punct |
", ",Qiagen |
R7785 |
T12309 |
T12307 |
npadvmod |
Valencia,Qiagen |
R7786 |
T12310 |
T12307 |
punct |
", ",Qiagen |
R7787 |
T12311 |
T12307 |
npadvmod |
CA,Qiagen |
R7788 |
T12312 |
T12307 |
punct |
", ",Qiagen |
R7789 |
T12313 |
T12307 |
npadvmod |
USA,Qiagen |
R7790 |
T12314 |
T12307 |
punct |
),Qiagen |
R7791 |
T12315 |
T12300 |
punct |
", ",using |
R7792 |
T12316 |
T12300 |
prep |
including,using |
R7793 |
T12317 |
T12318 |
det |
a,step |
R7794 |
T12318 |
T12316 |
pobj |
step,including |
R7795 |
T12319 |
T12318 |
compound |
DNase,step |
R7796 |
T12320 |
T12318 |
compound |
treatment,step |
R7797 |
T12321 |
T12298 |
punct |
.,isolated |
R7798 |
T12323 |
T12324 |
amod |
First,strand |
R7799 |
T12324 |
T12326 |
compound |
strand,cDNA |
R7800 |
T12325 |
T12324 |
punct |
-,strand |
R7801 |
T12326 |
T12327 |
nsubjpass |
cDNA,produced |
R7802 |
T12328 |
T12327 |
auxpass |
was,produced |
R7803 |
T12329 |
T12327 |
prep |
from,produced |
R7804 |
T12330 |
T12331 |
nummod |
2.5,μg |
R7805 |
T12331 |
T12329 |
pobj |
μg,from |
R7806 |
T12332 |
T12331 |
prep |
of,μg |
R7807 |
T12333 |
T12332 |
pobj |
RNA,of |
R7808 |
T12334 |
T12331 |
prep |
in,μg |
R7809 |
T12335 |
T12336 |
det |
a,volume |
R7810 |
T12336 |
T12334 |
pobj |
volume,in |
R7811 |
T12337 |
T12336 |
prep |
of,volume |
R7812 |
T12338 |
T12339 |
nummod |
50,μl |
R7813 |
T12339 |
T12337 |
pobj |
μl,of |
R7814 |
T12340 |
T12327 |
advcl |
using,produced |
R7815 |
T12341 |
T12342 |
amod |
random,hexamers |
R7816 |
T12342 |
T12340 |
dobj |
hexamers,using |
R7817 |
T12343 |
T12342 |
cc |
and,hexamers |
R7818 |
T12344 |
T12345 |
poss |
Invitrogen,transcriptase |
R7819 |
T12345 |
T12342 |
conj |
transcriptase,hexamers |
R7820 |
T12346 |
T12344 |
case |
's,Invitrogen |
R7821 |
T12347 |
T12345 |
nmod |
Superscript,transcriptase |
R7822 |
T12348 |
T12347 |
nummod |
II,Superscript |
R7823 |
T12349 |
T12345 |
amod |
reverse,transcriptase |
R7824 |
T12350 |
T12351 |
punct |
(,Invitrogen |
R7825 |
T12351 |
T12345 |
parataxis |
Invitrogen,transcriptase |
R7826 |
T12352 |
T12351 |
punct |
", ",Invitrogen |
R7827 |
T12353 |
T12351 |
npadvmod |
Carlsbad,Invitrogen |
R7828 |
T12354 |
T12351 |
punct |
", ",Invitrogen |
R7829 |
T12355 |
T12351 |
npadvmod |
CA,Invitrogen |
R7830 |
T12356 |
T12351 |
punct |
", ",Invitrogen |
R7831 |
T12357 |
T12351 |
npadvmod |
USA,Invitrogen |
R7832 |
T12358 |
T12351 |
punct |
),Invitrogen |
R7833 |
T12359 |
T12327 |
punct |
", ",produced |
R7834 |
T12360 |
T12327 |
prep |
according,produced |
R7835 |
T12361 |
T12360 |
prep |
to,according |
R7836 |
T12362 |
T12363 |
det |
the,manufacturer |
R7837 |
T12363 |
T12364 |
poss |
manufacturer,recommendations |
R7838 |
T12364 |
T12361 |
pobj |
recommendations,to |
R7839 |
T12365 |
T12363 |
case |
's,manufacturer |
R7840 |
T12366 |
T12327 |
punct |
.,produced |
R7841 |
T12368 |
T12369 |
nummod |
One,fifth |
R7842 |
T12369 |
T12373 |
nsubjpass |
fifth,used |
R7843 |
T12370 |
T12369 |
punct |
-,fifth |
R7844 |
T12371 |
T12369 |
nummod |
twenty,fifth |
R7845 |
T12372 |
T12369 |
punct |
-,fifth |
R7846 |
T12374 |
T12369 |
prep |
of,fifth |
R7847 |
T12375 |
T12376 |
det |
the,cDNA |
R7848 |
T12376 |
T12374 |
pobj |
cDNA,of |
R7849 |
T12377 |
T12376 |
amod |
resulting,cDNA |
R7850 |
T12378 |
T12373 |
auxpass |
was,used |
R7851 |
T12379 |
T12373 |
prep |
as,used |
R7852 |
T12380 |
T12379 |
pobj |
template,as |
R7853 |
T12381 |
T12373 |
prep |
in,used |
R7854 |
T12382 |
T12383 |
amod |
subsequent,reactions |
R7855 |
T12383 |
T12381 |
pobj |
reactions,in |
R7856 |
T12384 |
T12383 |
compound |
PCR,reactions |
R7857 |
T12385 |
T12373 |
punct |
.,used |
R7858 |
T12387 |
T12388 |
compound |
PCR,amplification |
R7859 |
T12388 |
T12389 |
nsubjpass |
amplification,performed |
R7860 |
T12390 |
T12388 |
amod |
biased,amplification |
R7861 |
T12391 |
T12390 |
prep |
towards,biased |
R7862 |
T12392 |
T12393 |
nmod |
class,receptors |
R7863 |
T12393 |
T12391 |
pobj |
receptors,towards |
R7864 |
T12394 |
T12392 |
nummod |
I,class |
R7865 |
T12395 |
T12393 |
amod |
olfactory,receptors |
R7866 |
T12396 |
T12389 |
auxpass |
was,performed |
R7867 |
T12397 |
T12389 |
advcl |
using,performed |
R7868 |
T12398 |
T12399 |
amod |
degenerate,P26 |
R7869 |
T12399 |
T12397 |
dobj |
P26,using |
R7870 |
T12400 |
T12399 |
compound |
primers,P26 |
R7871 |
T12401 |
T12402 |
punct |
[,17 |
R7872 |
T12402 |
T12399 |
parataxis |
17,P26 |
R7873 |
T12403 |
T12402 |
punct |
],17 |
R7874 |
T12404 |
T12399 |
cc |
and,P26 |
R7875 |
T12405 |
T12399 |
conj |
classI_R1,P26 |
R7876 |
T12406 |
T12407 |
punct |
(,GGRTTIADIRYIGGNGG |
R7877 |
T12407 |
T12405 |
parataxis |
GGRTTIADIRYIGGNGG,classI_R1 |
R7878 |
T12408 |
T12407 |
nummod |
5,GGRTTIADIRYIGGNGG |
R7879 |
T12409 |
T12408 |
punct |
',5 |
R7880 |
T12410 |
T12407 |
punct |
-,GGRTTIADIRYIGGNGG |
R7881 |
T12411 |
T12407 |
punct |
-,GGRTTIADIRYIGGNGG |
R7882 |
T12412 |
T12407 |
nummod |
3,GGRTTIADIRYIGGNGG |
R7883 |
T12413 |
T12407 |
punct |
',GGRTTIADIRYIGGNGG |
R7884 |
T12414 |
T12407 |
punct |
),GGRTTIADIRYIGGNGG |
R7885 |
T12415 |
T12399 |
prep |
with,P26 |
R7886 |
T12416 |
T12417 |
det |
an,temperature |
R7887 |
T12417 |
T12415 |
pobj |
temperature,with |
R7888 |
T12418 |
T12417 |
amod |
annealing,temperature |
R7889 |
T12419 |
T12417 |
prep |
of,temperature |
R7890 |
T12420 |
T12421 |
nummod |
44,°C |
R7891 |
T12421 |
T12419 |
pobj |
°C,of |
R7892 |
T12422 |
T12389 |
punct |
.,performed |
R7893 |
T12424 |
T12425 |
det |
The,product |
R7894 |
T12425 |
T12426 |
nsubjpass |
product,cloned |
R7895 |
T12427 |
T12426 |
auxpass |
was,cloned |
R7896 |
T12428 |
T12429 |
punct |
(,Invitrogen |
R7897 |
T12429 |
T12426 |
parataxis |
Invitrogen,cloned |
R7898 |
T12430 |
T12431 |
compound |
TA,kit |
R7899 |
T12431 |
T12429 |
dep |
kit,Invitrogen |
R7900 |
T12432 |
T12431 |
compound |
cloning,kit |
R7901 |
T12433 |
T12429 |
punct |
", ",Invitrogen |
R7902 |
T12434 |
T12429 |
punct |
),Invitrogen |
R7903 |
T12435 |
T12426 |
punct |
", ",cloned |
R7904 |
T12436 |
T12426 |
cc |
and,cloned |
R7905 |
T12437 |
T12438 |
amod |
individual,clones |
R7906 |
T12438 |
T12439 |
nsubjpass |
clones,sequenced |
R7907 |
T12439 |
T12426 |
conj |
sequenced,cloned |
R7908 |
T12440 |
T12439 |
auxpass |
were,sequenced |
R7909 |
T12441 |
T12439 |
punct |
.,sequenced |
R7910 |
T12443 |
T12444 |
amod |
Specific,primers |
R7911 |
T12444 |
T12446 |
nsubjpass |
primers,given |
R7912 |
T12445 |
T12444 |
compound |
PCR,primers |
R7913 |
T12447 |
T12444 |
acl |
used,primers |
R7914 |
T12448 |
T12449 |
aux |
to,confirm |
R7915 |
T12449 |
T12447 |
advcl |
confirm,used |
R7916 |
T12450 |
T12449 |
dobj |
expression,confirm |
R7917 |
T12451 |
T12450 |
prep |
of,expression |
R7918 |
T12452 |
T12453 |
amod |
individual,genes |
R7919 |
T12453 |
T12451 |
pobj |
genes,of |
R7920 |
T12454 |
T12455 |
amod |
olfactory,receptor |
R7921 |
T12455 |
T12453 |
compound |
receptor,genes |
R7922 |
T12456 |
T12446 |
auxpass |
are,given |
R7923 |
T12457 |
T12446 |
prep |
in,given |
R7924 |
T12458 |
T12459 |
amod |
Additional,file |
R7925 |
T12459 |
T12457 |
pobj |
file,in |
R7926 |
T12460 |
T12459 |
compound |
data,file |
R7927 |
T12461 |
T12459 |
nummod |
1,file |
R7928 |
T12462 |
T12446 |
punct |
.,given |
R7929 |
T12464 |
T12465 |
det |
Each,product |
R7930 |
T12465 |
T12467 |
nsubjpass |
product,sequenced |
R7931 |
T12466 |
T12465 |
compound |
PCR,product |
R7932 |
T12468 |
T12467 |
auxpass |
was,sequenced |
R7933 |
T12469 |
T12470 |
aux |
to,confirm |
R7934 |
T12470 |
T12467 |
advcl |
confirm,sequenced |
R7935 |
T12471 |
T12472 |
mark |
that,amplified |
R7936 |
T12472 |
T12470 |
ccomp |
amplified,confirm |
R7937 |
T12473 |
T12474 |
det |
the,gene |
R7938 |
T12474 |
T12472 |
nsubjpass |
gene,amplified |
R7939 |
T12475 |
T12474 |
amod |
expected,gene |
R7940 |
T12476 |
T12474 |
cc |
and,gene |
R7941 |
T12477 |
T12478 |
det |
no,others |
R7942 |
T12478 |
T12474 |
conj |
others,gene |
R7943 |
T12479 |
T12472 |
aux |
had,amplified |
R7944 |
T12480 |
T12472 |
auxpass |
been,amplified |
R7945 |
T12481 |
T12467 |
punct |
.,sequenced |
R7946 |
T12483 |
T12484 |
compound |
Control,reactions |
R7947 |
T12484 |
T12485 |
nsubj |
reactions,gave |
R7948 |
T12486 |
T12484 |
prep |
on,reactions |
R7949 |
T12487 |
T12488 |
det |
a,template |
R7950 |
T12488 |
T12486 |
pobj |
template,on |
R7951 |
T12489 |
T12488 |
acl |
made,template |
R7952 |
T12490 |
T12489 |
prep |
by,made |
R7953 |
T12491 |
T12490 |
pcomp |
omitting,by |
R7954 |
T12492 |
T12493 |
amod |
reverse,transcriptase |
R7955 |
T12493 |
T12491 |
dobj |
transcriptase,omitting |
R7956 |
T12494 |
T12495 |
det |
no,product |
R7957 |
T12495 |
T12485 |
dobj |
product,gave |
R7958 |
T12496 |
T12485 |
punct |
", ",gave |
R7959 |
T12497 |
T12485 |
advcl |
indicating,gave |
R7960 |
T12498 |
T12499 |
mark |
that,was |
R7961 |
T12499 |
T12497 |
ccomp |
was,indicating |
R7962 |
T12500 |
T12501 |
det |
the,preparation |
R7963 |
T12501 |
T12499 |
nsubj |
preparation,was |
R7964 |
T12502 |
T12501 |
compound |
RNA,preparation |
R7965 |
T12503 |
T12499 |
acomp |
uncontaminated,was |
R7966 |
T12504 |
T12503 |
prep |
by,uncontaminated |
R7967 |
T12505 |
T12506 |
amod |
genomic,DNA |
R7968 |
T12506 |
T12504 |
pobj |
DNA,by |
R7969 |
T12507 |
T12485 |
punct |
.,gave |
R7970 |
T12509 |
T12510 |
amod |
Relative,levels |
R7971 |
T12510 |
T12512 |
nsubjpass |
levels,estimated |
R7972 |
T12511 |
T12510 |
compound |
transcript,levels |
R7973 |
T12513 |
T12512 |
auxpass |
were,estimated |
R7974 |
T12514 |
T12512 |
advcl |
using,estimated |
R7975 |
T12515 |
T12516 |
amod |
real,time |
R7976 |
T12516 |
T12518 |
compound |
time,PCR |
R7977 |
T12517 |
T12516 |
punct |
-,time |
R7978 |
T12518 |
T12514 |
dobj |
PCR,using |
R7979 |
T12519 |
T12514 |
prep |
according,using |
R7980 |
T12520 |
T12519 |
prep |
to,according |
R7981 |
T12521 |
T12522 |
compound |
Applied,Biosystems |
R7982 |
T12522 |
T12523 |
poss |
Biosystems,protocols |
R7983 |
T12523 |
T12520 |
pobj |
protocols,to |
R7984 |
T12524 |
T12522 |
case |
',Biosystems |
R7985 |
T12525 |
T12514 |
punct |
", ",using |
R7986 |
T12526 |
T12527 |
mark |
with,given |
R7987 |
T12527 |
T12514 |
advcl |
given,using |
R7988 |
T12528 |
T12529 |
compound |
magnesium,concentration |
R7989 |
T12529 |
T12527 |
nsubj |
concentration,given |
R7990 |
T12530 |
T12529 |
punct |
", ",concentration |
R7991 |
T12531 |
T12532 |
compound |
primer,pair |
R7992 |
T12532 |
T12529 |
conj |
pair,concentration |
R7993 |
T12533 |
T12532 |
cc |
and,pair |
R7994 |
T12534 |
T12535 |
amod |
fluorescent,probe |
R7995 |
T12535 |
T12532 |
conj |
probe,pair |
R7996 |
T12536 |
T12527 |
prep |
in,given |
R7997 |
T12537 |
T12538 |
amod |
Additional,file |
R7998 |
T12538 |
T12536 |
pobj |
file,in |
R7999 |
T12539 |
T12538 |
compound |
data,file |
R8000 |
T12540 |
T12538 |
nummod |
2,file |
R8001 |
T12541 |
T12512 |
punct |
.,estimated |
R8002 |
T12543 |
T12544 |
det |
The,increase |
R8003 |
T12544 |
T12545 |
nsubjpass |
increase,measured |
R8004 |
T12546 |
T12544 |
prep |
in,increase |
R8005 |
T12547 |
T12546 |
pobj |
fluorescence,in |
R8006 |
T12548 |
T12544 |
prep |
during,increase |
R8007 |
T12549 |
T12548 |
pobj |
thermocycling,during |
R8008 |
T12550 |
T12545 |
auxpass |
was,measured |
R8009 |
T12551 |
T12545 |
prep |
on,measured |
R8010 |
T12552 |
T12553 |
det |
an,7900HT |
R8011 |
T12553 |
T12551 |
pobj |
7900HT,on |
R8012 |
T12554 |
T12553 |
compound |
ABI,7900HT |
R8013 |
T12555 |
T12553 |
compound |
PRISM,7900HT |
R8014 |
T12556 |
T12545 |
punct |
.,measured |
R8015 |
T12558 |
T12559 |
amod |
Standard,curves |
R8016 |
T12559 |
T12560 |
nsubjpass |
curves,constructed |
R8017 |
T12561 |
T12560 |
auxpass |
were,constructed |
R8018 |
T12562 |
T12560 |
prep |
for,constructed |
R8019 |
T12563 |
T12564 |
det |
each,pair |
R8020 |
T12564 |
T12562 |
pobj |
pair,for |
R8021 |
T12565 |
T12564 |
compound |
primer,pair |
R8022 |
T12566 |
T12560 |
advcl |
using,constructed |
R8023 |
T12567 |
T12568 |
compound |
triplicate,samples |
R8024 |
T12568 |
T12566 |
dobj |
samples,using |
R8025 |
T12569 |
T12568 |
prep |
of,samples |
R8026 |
T12570 |
T12571 |
nmod |
mouse,DNA |
R8027 |
T12571 |
T12569 |
pobj |
DNA,of |
R8028 |
T12572 |
T12571 |
amod |
genomic,DNA |
R8029 |
T12573 |
T12571 |
prep |
of,DNA |
R8030 |
T12574 |
T12575 |
nummod |
nine,concentrations |
R8031 |
T12575 |
T12573 |
pobj |
concentrations,of |
R8032 |
T12576 |
T12575 |
amod |
known,concentrations |
R8033 |
T12577 |
T12578 |
punct |
(,ng |
R8034 |
T12578 |
T12575 |
parataxis |
ng,concentrations |
R8035 |
T12579 |
T12578 |
dep |
range,ng |
R8036 |
T12580 |
T12581 |
quantmod |
0.01,100 |
R8037 |
T12581 |
T12578 |
nummod |
100,ng |
R8038 |
T12582 |
T12581 |
punct |
-,100 |
R8039 |
T12583 |
T12578 |
punct |
", ",ng |
R8040 |
T12584 |
T12578 |
cc |
or,ng |
R8041 |
T12585 |
T12586 |
advmod |
about,"30,000" |
R8042 |
T12586 |
T12589 |
nummod |
"30,000",copies |
R8043 |
T12587 |
T12586 |
quantmod |
3,"30,000" |
R8044 |
T12588 |
T12586 |
punct |
-,"30,000" |
R8045 |
T12589 |
T12578 |
conj |
copies,ng |
R8046 |
T12590 |
T12589 |
prep |
of,copies |
R8047 |
T12591 |
T12592 |
det |
the,genome |
R8048 |
T12592 |
T12590 |
pobj |
genome,of |
R8049 |
T12593 |
T12592 |
compound |
haploid,genome |
R8050 |
T12594 |
T12578 |
punct |
),ng |
R8051 |
T12595 |
T12560 |
punct |
.,constructed |
R8052 |
T12597 |
T12598 |
amod |
Relative,level |
R8053 |
T12598 |
T12600 |
nsubjpass |
level,determined |
R8054 |
T12599 |
T12598 |
compound |
expression,level |
R8055 |
T12601 |
T12598 |
prep |
of,level |
R8056 |
T12602 |
T12603 |
det |
each,gene |
R8057 |
T12603 |
T12601 |
pobj |
gene,of |
R8058 |
T12604 |
T12600 |
auxpass |
was,determined |
R8059 |
T12605 |
T12600 |
prep |
by,determined |
R8060 |
T12606 |
T12605 |
pcomp |
comparing,by |
R8061 |
T12607 |
T12608 |
det |
the,Ct |
R8062 |
T12608 |
T12606 |
dobj |
Ct,comparing |
R8063 |
T12609 |
T12608 |
amod |
mean,Ct |
R8064 |
T12610 |
T12608 |
punct |
(,Ct |
R8065 |
T12611 |
T12608 |
appos |
cycle,Ct |
R8066 |
T12612 |
T12613 |
advmod |
where,reaches |
R8067 |
T12613 |
T12611 |
relcl |
reaches,cycle |
R8068 |
T12614 |
T12613 |
nsubj |
fluorescence,reaches |
R8069 |
T12615 |
T12616 |
det |
an,value |
R8070 |
T12616 |
T12613 |
dobj |
value,reaches |
R8071 |
T12617 |
T12616 |
amod |
arbitrary,value |
R8072 |
T12618 |
T12616 |
compound |
threshold,value |
R8073 |
T12619 |
T12608 |
punct |
),Ct |
R8074 |
T12620 |
T12608 |
acl |
obtained,Ct |
R8075 |
T12621 |
T12620 |
prep |
with,obtained |
R8076 |
T12622 |
T12623 |
nummod |
six,samples |
R8077 |
T12623 |
T12621 |
pobj |
samples,with |
R8078 |
T12624 |
T12623 |
compound |
replicate,samples |
R8079 |
T12625 |
T12623 |
prep |
of,samples |
R8080 |
T12626 |
T12627 |
amod |
reverse,transcribed |
R8081 |
T12627 |
T12629 |
amod |
transcribed,RNA |
R8082 |
T12628 |
T12627 |
punct |
-,transcribed |
R8083 |
T12629 |
T12625 |
pobj |
RNA,of |
R8084 |
T12630 |
T12606 |
prep |
to,comparing |
R8085 |
T12631 |
T12632 |
det |
the,curve |
R8086 |
T12632 |
T12630 |
pobj |
curve,to |
R8087 |
T12633 |
T12632 |
amod |
standard,curve |
R8088 |
T12634 |
T12632 |
prep |
for,curve |
R8089 |
T12635 |
T12636 |
det |
the,primers |
R8090 |
T12636 |
T12634 |
pobj |
primers,for |
R8091 |
T12637 |
T12636 |
amod |
corresponding,primers |
R8092 |
T12638 |
T12600 |
punct |
.,determined |
R8093 |
T12640 |
T12641 |
amod |
Relative,levels |
R8094 |
T12641 |
T12643 |
nsubjpass |
levels,measured |
R8095 |
T12642 |
T12641 |
compound |
RNA,levels |
R8096 |
T12644 |
T12641 |
prep |
of,levels |
R8097 |
T12645 |
T12646 |
det |
a,gene |
R8098 |
T12646 |
T12644 |
pobj |
gene,of |
R8099 |
T12647 |
T12646 |
compound |
housekeeping,gene |
R8100 |
T12648 |
T12646 |
punct |
", ",gene |
R8101 |
T12649 |
T12650 |
amod |
ribosomal,S16 |
R8102 |
T12650 |
T12646 |
appos |
S16,gene |
R8103 |
T12651 |
T12643 |
punct |
", ",measured |
R8104 |
T12652 |
T12643 |
auxpass |
were,measured |
R8105 |
T12653 |
T12654 |
mark |
as,described |
R8106 |
T12654 |
T12643 |
advcl |
described,measured |
R8107 |
T12655 |
T12654 |
advmod |
previously,described |
R8108 |
T12656 |
T12657 |
punct |
[,52 |
R8109 |
T12657 |
T12654 |
parataxis |
52,described |
R8110 |
T12658 |
T12657 |
punct |
],52 |
R8111 |
T12659 |
T12643 |
punct |
.,measured |
R8112 |
T12661 |
T12662 |
compound |
Control,reactions |
R8113 |
T12662 |
T12663 |
nsubj |
reactions,amplified |
R8114 |
T12664 |
T12662 |
prep |
on,reactions |
R8115 |
T12665 |
T12664 |
pobj |
template,on |
R8116 |
T12666 |
T12665 |
acl |
prepared,template |
R8117 |
T12667 |
T12666 |
prep |
by,prepared |
R8118 |
T12668 |
T12667 |
pcomp |
omitting,by |
R8119 |
T12669 |
T12670 |
amod |
reverse,transcriptase |
R8120 |
T12670 |
T12668 |
dobj |
transcriptase,omitting |
R8121 |
T12671 |
T12663 |
prep |
at,amplified |
R8122 |
T12672 |
T12673 |
det |
a,level |
R8123 |
T12673 |
T12671 |
pobj |
level,at |
R8124 |
T12674 |
T12673 |
amod |
relative,level |
R8125 |
T12675 |
T12673 |
prep |
of,level |
R8126 |
T12676 |
T12677 |
quantmod |
0.03,0.01 |
R8127 |
T12677 |
T12679 |
nummod |
0.01,ng |
R8128 |
T12678 |
T12677 |
punct |
±,0.01 |
R8129 |
T12679 |
T12675 |
pobj |
ng,of |
R8130 |
T12680 |
T12679 |
cc |
or,ng |
R8131 |
T12681 |
T12679 |
conj |
less,ng |
R8132 |
T12682 |
T12663 |
prep |
in,amplified |
R8133 |
T12683 |
T12684 |
det |
each,case |
R8134 |
T12684 |
T12682 |
pobj |
case,in |
R8135 |
T12685 |
T12663 |
punct |
.,amplified |
R8136 |
T12687 |
T12688 |
compound |
Expression,measurements |
R8137 |
T12688 |
T12689 |
nsubjpass |
measurements,normalized |
R8138 |
T12690 |
T12688 |
prep |
of,measurements |
R8139 |
T12691 |
T12692 |
det |
the,genes |
R8140 |
T12692 |
T12690 |
pobj |
genes,of |
R8141 |
T12693 |
T12692 |
nummod |
seven,genes |
R8142 |
T12694 |
T12689 |
auxpass |
were,normalized |
R8143 |
T12695 |
T12689 |
prep |
for,normalized |
R8144 |
T12696 |
T12697 |
det |
each,mouse |
R8145 |
T12697 |
T12695 |
pobj |
mouse,for |
R8146 |
T12698 |
T12699 |
mark |
so,were |
R8147 |
T12699 |
T12689 |
advcl |
were,normalized |
R8148 |
T12700 |
T12699 |
mark |
that,were |
R8149 |
T12701 |
T12702 |
compound |
S16,levels |
R8150 |
T12702 |
T12699 |
nsubj |
levels,were |
R8151 |
T12703 |
T12699 |
acomp |
equal,were |
R8152 |
T12704 |
T12703 |
prep |
to,equal |
R8153 |
T12705 |
T12704 |
pobj |
1,to |
R8154 |
T12706 |
T12707 |
punct |
(,units |
R8155 |
T12707 |
T12705 |
parataxis |
units,1 |
R8156 |
T12708 |
T12707 |
amod |
arbitrary,units |
R8157 |
T12709 |
T12707 |
punct |
),units |
R8158 |
T12710 |
T12689 |
punct |
.,normalized |
R8159 |
T12805 |
T12806 |
advmod |
In,situ |
R8160 |
T12806 |
T12807 |
amod |
situ,hybridization |
R8161 |
T12809 |
T12810 |
amod |
Coronal,sections |
R8162 |
T12810 |
T12811 |
nsubjpass |
sections,cut |
R8163 |
T12812 |
T12811 |
auxpass |
were,cut |
R8164 |
T12813 |
T12811 |
prep |
from,cut |
R8165 |
T12814 |
T12815 |
det |
the,epithelia |
R8166 |
T12815 |
T12813 |
pobj |
epithelia,from |
R8167 |
T12816 |
T12815 |
amod |
olfactory,epithelia |
R8168 |
T12817 |
T12815 |
prep |
of,epithelia |
R8169 |
T12818 |
T12819 |
det |
an,mouse |
R8170 |
T12819 |
T12817 |
pobj |
mouse,of |
R8171 |
T12820 |
T12819 |
amod |
adult,mouse |
R8172 |
T12821 |
T12822 |
punct |
(,Figure |
R8173 |
T12822 |
T12819 |
parataxis |
Figure,mouse |
R8174 |
T12823 |
T12822 |
nummod |
4,Figure |
R8175 |
T12824 |
T12822 |
punct |
),Figure |
R8176 |
T12825 |
T12819 |
cc |
and,mouse |
R8177 |
T12826 |
T12827 |
det |
a,mouse |
R8178 |
T12827 |
T12819 |
conj |
mouse,mouse |
R8179 |
T12828 |
T12827 |
amod |
young,mouse |
R8180 |
T12829 |
T12830 |
punct |
(,P6 |
R8181 |
T12830 |
T12828 |
parataxis |
P6,young |
R8182 |
T12831 |
T12830 |
punct |
),P6 |
R8183 |
T12832 |
T12827 |
nmod |
C57BL,mouse |
R8184 |
T12833 |
T12832 |
punct |
/,C57BL |
R8185 |
T12834 |
T12832 |
nummod |
6,C57BL |
R8186 |
T12835 |
T12811 |
punct |
.,cut |
R8187 |
T12837 |
T12838 |
nmod |
RNA,hybridization |
R8188 |
T12838 |
T12841 |
nsubjpass |
hybridization,carried |
R8189 |
T12839 |
T12840 |
advmod |
in,situ |
R8190 |
T12840 |
T12838 |
amod |
situ,hybridization |
R8191 |
T12842 |
T12841 |
auxpass |
was,carried |
R8192 |
T12843 |
T12841 |
prt |
out,carried |
R8193 |
T12844 |
T12845 |
mark |
as,described |
R8194 |
T12845 |
T12841 |
advcl |
described,carried |
R8195 |
T12846 |
T12845 |
advmod |
previously,described |
R8196 |
T12847 |
T12848 |
punct |
[,53 |
R8197 |
T12848 |
T12845 |
parataxis |
53,described |
R8198 |
T12849 |
T12848 |
nummod |
15,53 |
R8199 |
T12850 |
T12848 |
punct |
",",53 |
R8200 |
T12851 |
T12848 |
punct |
],53 |
R8201 |
T12852 |
T12841 |
prep |
with,carried |
R8202 |
T12853 |
T12854 |
npadvmod |
digoxigenin,labeled |
R8203 |
T12854 |
T12856 |
amod |
labeled,riboprobes |
R8204 |
T12855 |
T12854 |
punct |
-,labeled |
R8205 |
T12856 |
T12852 |
pobj |
riboprobes,with |
R8206 |
T12857 |
T12856 |
amod |
antisense,riboprobes |
R8207 |
T12858 |
T12856 |
amod |
specific,riboprobes |
R8208 |
T12859 |
T12858 |
prep |
for,specific |
R8209 |
T12860 |
T12861 |
det |
the,UTRs |
R8210 |
T12861 |
T12859 |
pobj |
UTRs,for |
R8211 |
T12862 |
T12861 |
nummod |
3,UTRs |
R8212 |
T12863 |
T12862 |
punct |
',3 |
R8213 |
T12864 |
T12861 |
prep |
of,UTRs |
R8214 |
T12865 |
T12866 |
compound |
genes,AY318555 |
R8215 |
T12866 |
T12864 |
pobj |
AY318555,of |
R8216 |
T12867 |
T12868 |
punct |
(,kb |
R8217 |
T12868 |
T12866 |
parataxis |
kb,AY318555 |
R8218 |
T12869 |
T12868 |
nummod |
0.5,kb |
R8219 |
T12870 |
T12868 |
punct |
),kb |
R8220 |
T12871 |
T12866 |
cc |
and,AY318555 |
R8221 |
T12872 |
T12866 |
conj |
AY317365,AY318555 |
R8222 |
T12873 |
T12874 |
punct |
(,kb |
R8223 |
T12874 |
T12872 |
parataxis |
kb,AY317365 |
R8224 |
T12875 |
T12874 |
nummod |
0.5,kb |
R8225 |
T12876 |
T12874 |
punct |
),kb |
R8226 |
T12877 |
T12841 |
punct |
.,carried |
R8227 |
T12879 |
T12880 |
compound |
Riboprobe,sequences |
R8228 |
T12880 |
T12881 |
nsubjpass |
sequences,generated |
R8229 |
T12882 |
T12881 |
auxpass |
were,generated |
R8230 |
T12883 |
T12881 |
prep |
by,generated |
R8231 |
T12884 |
T12883 |
pobj |
PCR,by |
R8232 |
T12885 |
T12881 |
advcl |
using,generated |
R8233 |
T12886 |
T12887 |
compound |
primer,pairs |
R8234 |
T12887 |
T12885 |
dobj |
pairs,using |
R8235 |
T12888 |
T12889 |
nummod |
5,TCTTCCAAACCTGGACCCCCC |
R8236 |
T12889 |
T12887 |
appos |
TCTTCCAAACCTGGACCCCCC,pairs |
R8237 |
T12890 |
T12888 |
punct |
',5 |
R8238 |
T12891 |
T12889 |
punct |
-,TCTTCCAAACCTGGACCCCCC |
R8239 |
T12892 |
T12889 |
punct |
-,TCTTCCAAACCTGGACCCCCC |
R8240 |
T12893 |
T12889 |
nummod |
3,TCTTCCAAACCTGGACCCCCC |
R8241 |
T12894 |
T12889 |
punct |
',TCTTCCAAACCTGGACCCCCC |
R8242 |
T12895 |
T12889 |
cc |
and,TCTTCCAAACCTGGACCCCCC |
R8243 |
T12896 |
T12897 |
nummod |
5,ATCTCTCCAGCACCTTACTTG |
R8244 |
T12897 |
T12889 |
conj |
ATCTCTCCAGCACCTTACTTG,TCTTCCAAACCTGGACCCCCC |
R8245 |
T12898 |
T12896 |
punct |
',5 |
R8246 |
T12899 |
T12897 |
punct |
-,ATCTCTCCAGCACCTTACTTG |
R8247 |
T12900 |
T12897 |
punct |
-,ATCTCTCCAGCACCTTACTTG |
R8248 |
T12901 |
T12897 |
nummod |
3,ATCTCTCCAGCACCTTACTTG |
R8249 |
T12902 |
T12897 |
punct |
',ATCTCTCCAGCACCTTACTTG |
R8250 |
T12903 |
T12885 |
prep |
for,using |
R8251 |
T12904 |
T12903 |
pobj |
AY318555,for |
R8252 |
T12905 |
T12885 |
cc |
and,using |
R8253 |
T12906 |
T12907 |
compound |
primer,pairs |
R8254 |
T12907 |
T12885 |
conj |
pairs,using |
R8255 |
T12908 |
T12909 |
nummod |
5,TAAGATGTAAGTGATAATTTAGATTACAGG |
R8256 |
T12909 |
T12907 |
appos |
TAAGATGTAAGTGATAATTTAGATTACAGG,pairs |
R8257 |
T12910 |
T12908 |
punct |
',5 |
R8258 |
T12911 |
T12909 |
punct |
-,TAAGATGTAAGTGATAATTTAGATTACAGG |
R8259 |
T12912 |
T12909 |
punct |
-,TAAGATGTAAGTGATAATTTAGATTACAGG |
R8260 |
T12913 |
T12909 |
nummod |
3,TAAGATGTAAGTGATAATTTAGATTACAGG |
R8261 |
T12914 |
T12909 |
punct |
',TAAGATGTAAGTGATAATTTAGATTACAGG |
R8262 |
T12915 |
T12909 |
cc |
and,TAAGATGTAAGTGATAATTTAGATTACAGG |
R8263 |
T12916 |
T12917 |
nummod |
5,TTTCTGCCTCAGCTATGACAG |
R8264 |
T12917 |
T12909 |
conj |
TTTCTGCCTCAGCTATGACAG,TAAGATGTAAGTGATAATTTAGATTACAGG |
R8265 |
T12918 |
T12916 |
punct |
',5 |
R8266 |
T12919 |
T12917 |
punct |
-,TTTCTGCCTCAGCTATGACAG |
R8267 |
T12920 |
T12917 |
punct |
-,TTTCTGCCTCAGCTATGACAG |
R8268 |
T12921 |
T12917 |
nummod |
3,TTTCTGCCTCAGCTATGACAG |
R8269 |
T12922 |
T12917 |
punct |
',TTTCTGCCTCAGCTATGACAG |
R8270 |
T12923 |
T12907 |
prep |
for,pairs |
R8271 |
T12924 |
T12923 |
pobj |
AY317365,for |
R8272 |
T12925 |
T12881 |
punct |
.,generated |
R8273 |
T12927 |
T12928 |
nsubjpass |
Hybridization,carried |
R8274 |
T12929 |
T12928 |
auxpass |
was,carried |
R8275 |
T12930 |
T12928 |
prt |
out,carried |
R8276 |
T12931 |
T12928 |
prep |
in,carried |
R8277 |
T12932 |
T12933 |
nummod |
50,% |
R8278 |
T12933 |
T12934 |
compound |
%,formamide |
R8279 |
T12934 |
T12931 |
pobj |
formamide,in |
R8280 |
T12935 |
T12928 |
prep |
at,carried |
R8281 |
T12936 |
T12937 |
nummod |
65,°C |
R8282 |
T12937 |
T12935 |
pobj |
°C,at |
R8283 |
T12938 |
T12928 |
punct |
", ",carried |
R8284 |
T12939 |
T12928 |
cc |
and,carried |
R8285 |
T12940 |
T12941 |
nsubjpass |
slides,washed |
R8286 |
T12941 |
T12928 |
conj |
washed,carried |
R8287 |
T12942 |
T12941 |
auxpass |
were,washed |
R8288 |
T12943 |
T12941 |
prep |
at,washed |
R8289 |
T12944 |
T12945 |
amod |
high,stringency |
R8290 |
T12945 |
T12943 |
pobj |
stringency,at |
R8291 |
T12946 |
T12947 |
punct |
(,°C |
R8292 |
T12947 |
T12945 |
parataxis |
°C,stringency |
R8293 |
T12948 |
T12947 |
nummod |
65,°C |
R8294 |
T12949 |
T12947 |
punct |
", ",°C |
R8295 |
T12950 |
T12951 |
nsubj |
0.2,SSC |
R8296 |
T12951 |
T12947 |
ccomp |
SSC,°C |
R8297 |
T12952 |
T12951 |
punct |
×,SSC |
R8298 |
T12953 |
T12947 |
punct |
),°C |
R8299 |
T12954 |
T12941 |
punct |
.,washed |
R8300 |
T12956 |
T12957 |
det |
The,probes |
R8301 |
T12957 |
T12958 |
nsubj |
probes,hybridize |
R8302 |
T12959 |
T12957 |
appos |
each,probes |
R8303 |
T12960 |
T12958 |
prep |
to,hybridize |
R8304 |
T12961 |
T12962 |
advmod |
only,band |
R8305 |
T12962 |
T12960 |
pobj |
band,to |
R8306 |
T12963 |
T12962 |
nummod |
one,band |
R8307 |
T12964 |
T12962 |
prep |
on,band |
R8308 |
T12965 |
T12966 |
det |
a,blot |
R8309 |
T12966 |
T12964 |
pobj |
blot,on |
R8310 |
T12967 |
T12966 |
compound |
Southern,blot |
R8311 |
T12968 |
T12958 |
punct |
", ",hybridize |
R8312 |
T12969 |
T12958 |
advcl |
indicating,hybridize |
R8313 |
T12970 |
T12971 |
mark |
that,detects |
R8314 |
T12971 |
T12969 |
ccomp |
detects,indicating |
R8315 |
T12972 |
T12973 |
det |
each,probe |
R8316 |
T12973 |
T12971 |
nsubj |
probe,detects |
R8317 |
T12974 |
T12971 |
advmod |
only,detects |
R8318 |
T12975 |
T12976 |
nummod |
one,gene |
R8319 |
T12976 |
T12971 |
dobj |
gene,detects |
R8320 |
T12977 |
T12978 |
amod |
olfactory,receptor |
R8321 |
T12978 |
T12976 |
compound |
receptor,gene |
R8322 |
T12979 |
T12958 |
punct |
.,hybridize |
R8323 |
T12981 |
T12982 |
compound |
BLAST,analyses |
R8324 |
T12982 |
T12983 |
nsubj |
analyses,show |
R8325 |
T12984 |
T12985 |
mark |
that,is |
R8326 |
T12985 |
T12983 |
advcl |
is,show |
R8327 |
T12986 |
T12987 |
det |
the,probe |
R8328 |
T12987 |
T12985 |
nsubj |
probe,is |
R8329 |
T12988 |
T12987 |
compound |
AY318555,probe |
R8330 |
T12989 |
T12985 |
acomp |
unique,is |
R8331 |
T12990 |
T12985 |
prep |
in,is |
R8332 |
T12991 |
T12992 |
poss |
Celera,assembly |
R8333 |
T12992 |
T12990 |
pobj |
assembly,in |
R8334 |
T12993 |
T12991 |
case |
's,Celera |
R8335 |
T12994 |
T12995 |
compound |
mouse,genome |
R8336 |
T12995 |
T12992 |
compound |
genome,assembly |
R8337 |
T12996 |
T12997 |
punct |
(,Release |
R8338 |
T12997 |
T12985 |
parataxis |
Release,is |
R8339 |
T12998 |
T12997 |
nummod |
13,Release |
R8340 |
T12999 |
T12997 |
punct |
),Release |
R8341 |
T13000 |
T12985 |
punct |
", ",is |
R8342 |
T13001 |
T12985 |
cc |
and,is |
R8343 |
T13002 |
T13003 |
mark |
that,is |
R8344 |
T13003 |
T12985 |
conj |
is,is |
R8345 |
T13004 |
T13005 |
det |
the,probe |
R8346 |
T13005 |
T13003 |
nsubj |
probe,is |
R8347 |
T13006 |
T13005 |
compound |
AY317365,probe |
R8348 |
T13007 |
T13003 |
acomp |
similar,is |
R8349 |
T13008 |
T13007 |
prep |
to,similar |
R8350 |
T13009 |
T13010 |
advmod |
only,region |
R8351 |
T13010 |
T13008 |
pobj |
region,to |
R8352 |
T13011 |
T13010 |
nummod |
one,region |
R8353 |
T13012 |
T13010 |
amod |
other,region |
R8354 |
T13013 |
T13010 |
amod |
genomic,region |
R8355 |
T13014 |
T12983 |
punct |
.,show |
R8356 |
T13016 |
T13017 |
det |
This,region |
R8357 |
T13017 |
T13020 |
nsubj |
region,is |
R8358 |
T13018 |
T13017 |
amod |
potential,region |
R8359 |
T13019 |
T13017 |
amod |
cross-hybridizing,region |
R8360 |
T13021 |
T13022 |
quantmod |
over,10 |
R8361 |
T13022 |
T13023 |
nummod |
10,Mb |
R8362 |
T13023 |
T13024 |
npadvmod |
Mb,from |
R8363 |
T13024 |
T13020 |
prep |
from,is |
R8364 |
T13025 |
T13026 |
det |
the,region |
R8365 |
T13026 |
T13024 |
pobj |
region,from |
R8366 |
T13027 |
T13026 |
amod |
nearest,region |
R8367 |
T13028 |
T13029 |
amod |
olfactory,receptor |
R8368 |
T13029 |
T13026 |
compound |
receptor,region |
R8369 |
T13030 |
T13026 |
compound |
coding,region |
R8370 |
T13031 |
T13020 |
cc |
and,is |
R8371 |
T13032 |
T13020 |
conj |
is,is |
R8372 |
T13033 |
T13032 |
advmod |
thus,is |
R8373 |
T13034 |
T13035 |
advmod |
highly,unlikely |
R8374 |
T13035 |
T13032 |
acomp |
unlikely,is |
R8375 |
T13036 |
T13037 |
aux |
to,included |
R8376 |
T13037 |
T13035 |
xcomp |
included,unlikely |
R8377 |
T13038 |
T13037 |
auxpass |
be,included |
R8378 |
T13039 |
T13037 |
prep |
in,included |
R8379 |
T13040 |
T13041 |
det |
any,transcript |
R8380 |
T13041 |
T13039 |
pobj |
transcript,in |
R8381 |
T13042 |
T13043 |
amod |
olfactory,receptor |
R8382 |
T13043 |
T13041 |
compound |
receptor,transcript |
R8383 |
T13044 |
T13020 |
punct |
.,is |
R8384 |
T13046 |
T13047 |
amod |
Low,power |
R8385 |
T13047 |
T13049 |
compound |
power,images |
R8386 |
T13048 |
T13047 |
punct |
-,power |
R8387 |
T13049 |
T13050 |
nsubjpass |
images,composed |
R8388 |
T13051 |
T13050 |
auxpass |
are,composed |
R8389 |
T13052 |
T13050 |
prep |
of,composed |
R8390 |
T13053 |
T13054 |
nummod |
three,micrographs |
R8391 |
T13054 |
T13052 |
pobj |
micrographs,of |
R8392 |
T13055 |
T13054 |
amod |
overlapping,micrographs |
R8393 |
T13056 |
T13057 |
punct |
(,40 |
R8394 |
T13057 |
T13054 |
parataxis |
40,micrographs |
R8395 |
T13058 |
T13057 |
punct |
×,40 |
R8396 |
T13059 |
T13057 |
punct |
),40 |
R8397 |
T13060 |
T13054 |
acl |
assembled,micrographs |
R8398 |
T13061 |
T13060 |
prep |
in,assembled |
R8399 |
T13062 |
T13063 |
compound |
Adobe,Photoshop |
R8400 |
T13063 |
T13061 |
pobj |
Photoshop,in |
R8401 |
T13064 |
T13063 |
nummod |
7.0,Photoshop |
R8402 |
T13065 |
T13050 |
punct |
.,composed |
R8405 |
T13087 |
T13085 |
prep |
of,list |
R8406 |
T13088 |
T13089 |
det |
the,primers |
R8407 |
T13089 |
T13087 |
pobj |
primers,of |
R8408 |
T13090 |
T13089 |
acl |
used,primers |
R8409 |
T13091 |
T13092 |
aux |
to,confirm |
R8410 |
T13092 |
T13090 |
advcl |
confirm,used |
R8411 |
T13093 |
T13094 |
det |
the,expression |
R8412 |
T13094 |
T13092 |
dobj |
expression,confirm |
R8413 |
T13095 |
T13094 |
prep |
of,expression |
R8414 |
T13096 |
T13097 |
amod |
olfactory,receptor |
R8415 |
T13097 |
T13098 |
compound |
receptor,genes |
R8416 |
T13098 |
T13095 |
pobj |
genes,of |
R8417 |
T13099 |
T13092 |
prep |
by,confirm |
R8418 |
T13100 |
T13101 |
compound |
RT,PCR |
R8419 |
T13101 |
T13099 |
pobj |
PCR,by |
R8420 |
T13102 |
T13101 |
punct |
-,PCR |
R8421 |
T13103 |
T13101 |
cc |
and,PCR |
R8422 |
T13104 |
T13101 |
conj |
PCR,PCR |
R8423 |
T13105 |
T13101 |
prep |
from,PCR |
R8424 |
T13106 |
T13107 |
compound |
cDNA,templates |
R8425 |
T13107 |
T13105 |
pobj |
templates,from |
R8426 |
T13108 |
T13107 |
compound |
library,templates |
R8427 |
T13109 |
T13086 |
aux |
can,found |
R8428 |
T13110 |
T13086 |
auxpass |
be,found |
R8429 |
T13111 |
T13086 |
prep |
in,found |
R8430 |
T13112 |
T13113 |
amod |
Additional,file |
R8431 |
T13113 |
T13111 |
pobj |
file,in |
R8432 |
T13114 |
T13113 |
compound |
data,file |
R8433 |
T13115 |
T13113 |
nummod |
1,file |
R8434 |
T13116 |
T13086 |
punct |
.,found |
R8435 |
T13118 |
T13119 |
det |
The,conditions |
R8436 |
T13119 |
T13121 |
nsubjpass |
conditions,found |
R8437 |
T13120 |
T13119 |
amod |
experimental,conditions |
R8438 |
T13122 |
T13119 |
acl |
used,conditions |
R8439 |
T13123 |
T13122 |
prep |
for,used |
R8440 |
T13124 |
T13125 |
amod |
real,time |
R8441 |
T13125 |
T13127 |
compound |
time,PCR |
R8442 |
T13126 |
T13125 |
punct |
-,time |
R8443 |
T13127 |
T13123 |
pobj |
PCR,for |
R8444 |
T13128 |
T13121 |
aux |
can,found |
R8445 |
T13129 |
T13121 |
auxpass |
be,found |
R8446 |
T13130 |
T13121 |
prep |
in,found |
R8447 |
T13131 |
T13132 |
amod |
Additional,file |
R8448 |
T13132 |
T13130 |
pobj |
file,in |
R8449 |
T13133 |
T13132 |
compound |
data,file |
R8450 |
T13134 |
T13132 |
nummod |
2,file |
R8451 |
T13135 |
T13121 |
punct |
.,found |
R30 |
T328 |
T327 |
compound |
sequence,tags |
R295 |
T271 |
T272 |
det |
The,family |
R296 |
T272 |
T276 |
nsubj |
family,is |
R297 |
T273 |
T274 |
amod |
olfactory,receptor |
R298 |
T274 |
T275 |
compound |
receptor,gene |
R299 |
T275 |
T272 |
compound |
gene,family |
R300 |
T277 |
T276 |
attr |
one,is |
R1192 |
T2067 |
T2065 |
pobj |
region,of |
R5953 |
T9768 |
T9764 |
appos |
itself,act |
R5954 |
T9769 |
T9765 |
aux |
may,be |
R5955 |
T9770 |
T9765 |
acomp |
important,be |
R6238 |
T10072 |
T10073 |
nsubj |
neurons,make |
R6336 |
T10266 |
T10264 |
pobj |
mutant,with |
R6339 |
T10268 |
T10269 |
compound |
receptor,deletion |
R6341 |
T10269 |
T10266 |
compound |
deletion,mutant |
R6342 |
T10270 |
T10271 |
punct |
[,45 |
R8403 |
T13084 |
T13085 |
det |
A,list |
R8404 |
T13085 |
T13086 |
nsubjpass |
list,found |
R276 |
T246 |
T247 |
compound |
Odorant,receptor |
R277 |
T247 |
T249 |
npadvmod |
receptor,expressed |
R278 |
T249 |
T250 |
amod |
expressed,tags |
R279 |
T250 |
T252 |
nsubj |
tags,demonstrate |
R280 |
T251 |
T250 |
compound |
sequence,tags |
R281 |
T253 |
T254 |
amod |
olfactory,expression |
R282 |
T254 |
T252 |
dobj |
expression,demonstrate |
R283 |
T255 |
T254 |
prep |
of,expression |
R284 |
T256 |
T257 |
quantmod |
over,400 |
R285 |
T257 |
T258 |
nummod |
400,genes |
R286 |
T258 |
T255 |
pobj |
genes,of |
R287 |
T259 |
T254 |
punct |
", ",expression |
R288 |
T260 |
T261 |
amod |
extensive,splicing |
R289 |
T261 |
T254 |
conj |
splicing,expression |
R290 |
T262 |
T261 |
amod |
alternate,splicing |
R291 |
T263 |
T261 |
cc |
and,splicing |
R292 |
T264 |
T265 |
amod |
unequal,levels |
R293 |
T265 |
T261 |
conj |
levels,splicing |
R294 |
T266 |
T265 |
compound |
expression,levels |
R6901 |
T11021 |
T11011 |
conj |
database,dbEST |
R6902 |
T11022 |
T11023 |
amod |
olfactory,receptor |
R6903 |
T11023 |
T11021 |
compound |
receptor,database |
R6904 |
T11024 |
T11025 |
punct |
[,46 |
R6905 |
T11025 |
T11005 |
parataxis |
46,are |
R6906 |
T11026 |
T11025 |
punct |
],46 |
R6907 |
T11027 |
T11005 |
punct |
.,are |
R6908 |
T11029 |
T11030 |
det |
The,catalog |
R5 |
T301 |
T290 |
conj |
is,identified |
R6 |
T302 |
T300 |
acl |
confirming,evidence |
R7 |
T303 |
T304 |
amod |
olfactory,function |
R8 |
T304 |
T302 |
dobj |
function,confirming |
R9 |
T305 |
T301 |
acomp |
available,is |
R10 |
T306 |
T301 |
prep |
for,is |
R11 |
T307 |
T308 |
advmod |
very,few |
R12 |
T308 |
T309 |
amod |
few,receptors |
R13 |
T309 |
T306 |
pobj |
receptors,for |
R14 |
T310 |
T309 |
amod |
olfactory,receptors |
R15 |
T311 |
T301 |
punct |
.,is |
R16 |
T313 |
T314 |
nsubj |
We,screened |
R17 |
T315 |
T314 |
advmod |
therefore,screened |
R18 |
T316 |
T317 |
det |
a,library |
R19 |
T317 |
T314 |
dobj |
library,screened |
R20 |
T318 |
T319 |
nmod |
mouse,epithelium |
R21 |
T319 |
T317 |
compound |
epithelium,library |
R22 |
T320 |
T319 |
amod |
olfactory,epithelium |
R23 |
T321 |
T317 |
compound |
cDNA,library |
R24 |
T322 |
T323 |
aux |
to,obtain |
R25 |
T323 |
T314 |
advcl |
obtain,screened |
R26 |
T324 |
T325 |
amod |
olfactory,receptor |
R27 |
T325 |
T326 |
npadvmod |
receptor,expressed |
R28 |
T326 |
T327 |
amod |
expressed,tags |
R6344 |
T10271 |
T10263 |
parataxis |
45,analogy |
R6345 |
T10272 |
T10271 |
punct |
],45 |
R6346 |
T10273 |
T10262 |
punct |
", ",is |
R6348 |
T10274 |
T10262 |
nsubj |
it,is |
R6349 |
T10275 |
T10262 |
acomp |
likely,is |
R6351 |
T10276 |
T10277 |
mark |
that,die |
R6352 |
T10277 |
T10262 |
ccomp |
die,is |
R6353 |
T10278 |
T10279 |
amod |
most,neurons |
R6355 |
T10279 |
T10277 |
nsubj |
neurons,die |
R6356 |
T10280 |
T10281 |
npadvmod |
pseudogene,expressing |
R6357 |
T10281 |
T10279 |
amod |
expressing,neurons |
R6358 |
T10282 |
T10281 |
punct |
-,expressing |
R6359 |
T10283 |
T10277 |
cc |
or,die |
R6361 |
T10284 |
T10277 |
conj |
switch,die |
R6362 |
T10285 |
T10286 |
aux |
to,express |
R6363 |
T10286 |
T10284 |
advcl |
express,switch |
R6364 |
T10287 |
T10288 |
det |
a,gene |
R6366 |
T10288 |
T10286 |
dobj |
gene,express |
R6367 |
T10289 |
T10288 |
amod |
different,gene |
R6369 |
T10290 |
T10291 |
amod |
olfactory,receptor |
R6370 |
T10291 |
T10288 |
compound |
receptor,gene |
R6371 |
T10292 |
T10277 |
punct |
", ",die |
R6372 |
T10293 |
T10277 |
advcl |
leaving,die |