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PMC:3279418 / 6052-7229 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12991 44-46 FW denotes In
T12992 47-51 FW denotes vivo
T12993 52-55 CC denotes and
T12994 56-58 FW denotes in
T12995 59-64 FW denotes vitro
T12996 65-73 NN denotes features
T12997 74-76 IN denotes of
T12998 77-84 NN denotes SHARPIN
T12999 86-87 -LRB- denotes (
T13000 87-88 NN denotes A
T13001 88-89 -RRB- denotes )
T13002 90-95 NN denotes COILS
T13003 96-99 CC denotes and
T13004 100-109 NNP denotes MotifScan
T13005 110-118 NN denotes programs
T13006 119-123 VB denotes were
T13007 124-128 VB denotes used
T13008 129-131 TO denotes to
T13009 132-139 VB denotes predict
T13010 140-143 DT denotes the
T13011 144-152 NN denotes presence
T13012 153-155 IN denotes of
T13013 156-158 NN denotes CC
T13014 159-160 -LRB- denotes (
T13015 160-171 NN denotes coiled-coil
T13016 171-172 -RRB- denotes )
T13017 173-179 NN denotes domain
T13018 179-180 -COMMA- denotes ,
T13019 181-184 NN denotes UBL
T13020 185-186 -LRB- denotes (
T13021 186-200 JJ denotes ubiquitin-like
T13022 200-201 -RRB- denotes )
T13023 202-208 NN denotes domain
T13024 209-212 CC denotes and
T13025 213-218 NN denotes ZFRBP
T13026 219-220 -LRB- denotes (
T13027 220-231 NN denotes zinc-finger
T13028 232-243 NN denotes Ran-Binding
T13029 244-251 NN denotes protein
T13030 252-253 CD denotes 2
T13031 253-254 -RRB- denotes )
T13032 255-261 NN denotes domain
T13033 262-267 WDT denotes which
T13034 268-272 VB denotes form
T13035 273-280 JJ denotes similar
T13036 281-286 NN denotes motif
T13037 287-295 NN denotes patterns
T13038 296-298 IN denotes in
T13039 299-302 DT denotes the
T13040 303-310 NN denotes SHARPIN
T13041 311-318 NN denotes protein
T13042 319-321 IN denotes of
T13043 322-327 JJ denotes human
T13044 327-328 -COMMA- denotes ,
T13045 329-334 NN denotes mouse
T13046 335-338 CC denotes and
T13047 339-342 NN denotes rat
T13048 343-351 NN denotes origins.
T13049 352-353 -LRB- denotes (
T13050 353-354 NN denotes B
T13051 354-355 -RRB- denotes )
T13052 356-361 CD denotes Eight
T13053 362-370 JJ denotes week-old
T13054 371-378 NN denotes females
T13055 379-381 IN denotes of
T13056 382-384 NN denotes WT
T13057 385-388 CC denotes and
T13058 389-393 NN denotes cpdm
T13059 394-398 NN denotes mice
T13060 400-403 DT denotes The
T13061 404-410 JJ denotes mutant
T13062 411-415 NN denotes mice
T13063 416-417 -LRB- denotes (
T13064 417-422 IN denotes above
T13065 422-423 -RRB- denotes )
T13066 424-431 VB denotes develop
T13067 432-443 JJ denotes progressive
T13068 444-448 NN denotes skin
T13069 449-461 NN denotes inflammation
T13070 462-470 VB denotes starting
T13071 471-473 IN denotes at
T13072 474-479 IN denotes about
T13073 480-484 CD denotes four
T13074 485-491 NN denotes weeks.
T13075 492-493 -LRB- denotes (
T13076 493-494 NN denotes C
T13077 494-495 -RRB- denotes )
T13078 496-510 JJ denotes Extramedullary
T13079 511-524 NN denotes hematopoiesis
T13080 525-531 VB denotes causes
T13081 532-538 JJ denotes marked
T13082 539-550 NN denotes enlargement
T13083 551-553 IN denotes of
T13084 554-557 DT denotes the
T13085 558-564 NN denotes spleen
T13086 565-567 IN denotes of
T13087 568-572 NN denotes cpdm
T13088 573-578 NN denotes mice.
T13089 579-580 -LRB- denotes (
T13090 580-581 NN denotes D
T13091 581-582 -RRB- denotes )
T13092 583-587 NN denotes BMDC
T13093 588-592 VB denotes were
T13094 593-602 VB denotes incubated
T13095 603-605 IN denotes in
T13096 606-609 DT denotes the
T13097 610-617 NN denotes absence
T13098 618-620 CC denotes or
T13099 621-629 NN denotes presence
T13100 630-632 IN denotes of
T13101 633-636 CD denotes 100
T13102 637-642 NN denotes ng/ml
T13103 643-646 NN denotes LPS
T13104 647-650 IN denotes for
T13105 651-652 CD denotes 4
T13106 653-658 NN denotes hours
T13107 660-663 DT denotes The
T13108 664-668 NN denotes mRNA
T13109 669-674 NN denotes level
T13110 675-677 IN denotes of
T13111 678-685 NN denotes Sharpin
T13112 686-689 VB denotes was
T13113 690-698 VB denotes measured
T13114 699-701 IN denotes by
T13115 702-709 NN denotes qRT-PCR
T13116 710-713 CC denotes and
T13117 714-723 VB denotes presented
T13118 724-732 JJ denotes relative
T13119 733-735 TO denotes to
T13120 736-739 DT denotes the
T13121 740-744 NN denotes mRNA
T13122 745-755 NN denotes expression
T13123 756-758 IN denotes in
T13124 759-773 JJ denotes non-stimulated
T13125 774-776 NNP denotes WT
T13126 777-781 NN denotes BMDC
T13127 783-787 NN denotes Bars
T13128 788-797 VB denotes represent
T13129 798-801 DT denotes the
T13130 802-806 JJ denotes mean
T13131 807-808 JJ denotes ±
T13132 809-813 NN denotes s.d.
T13133 814-816 IN denotes of
T13134 817-818 CD denotes 3
T13135 819-824 NN denotes mice.
T13136 825-826 SYM denotes *
T13137 827-828 NN denotes P
T13138 828-829 SYM denotes <
T13139 829-833 CD denotes 0.05
T13140 833-834 -COLON- denotes ;
T13141 835-837 SYM denotes **
T13142 838-839 NN denotes P
T13143 839-840 SYM denotes <
T13144 840-846 CD denotes 0.001.
T13145 847-848 -LRB- denotes (
T13146 848-849 NN denotes E
T13147 849-850 -RRB- denotes )
T13148 851-861 NN denotes Fibroblast
T13149 862-863 -LRB- denotes (
T13150 863-869 NN denotes NIH3T3
T13151 869-870 -RRB- denotes )
T13152 871-874 CC denotes and
T13153 875-886 NN denotes macrophages
T13154 887-888 -LRB- denotes (
T13155 888-896 NN denotes RAW264.7
T13156 896-897 -RRB- denotes )
T13157 898-903 NN denotes cells
T13158 904-908 VB denotes were
T13159 909-920 VB denotes transfected
T13160 921-925 IN denotes with
T13161 926-929 DT denotes the
T13162 930-940 NN denotes expression
T13163 941-948 NN denotes plasmid
T13164 949-962 NN denotes pFLAG-SHARPIN
T13165 964-969 IN denotes After
T13166 970-972 CD denotes 48
T13167 973-978 NN denotes hours
T13168 978-979 -COMMA- denotes ,
T13169 980-985 NN denotes cells
T13170 986-990 VB denotes were
T13171 991-996 VB denotes fixed
T13172 997-1000 CC denotes and
T13173 1001-1007 VB denotes probed
T13174 1008-1012 IN denotes with
T13175 1013-1022 JJ denotes anti-FLAG
T13176 1023-1026 CC denotes and
T13177 1027-1042 JJ denotes FITC-conjugated
T13178 1043-1052 JJ denotes secondary
T13179 1053-1061 NN denotes antibody
T13180 1063-1069 NN denotes Nuclei
T13181 1070-1074 VB denotes were
T13182 1075-1082 VB denotes stained
T13183 1083-1087 IN denotes with
T13184 1088-1092 NNP denotes DAPI
T13185 1094-1096 IN denotes In
T13186 1097-1101 DT denotes both
T13187 1102-1113 VB denotes transfected
T13188 1114-1118 NN denotes cell
T13189 1119-1124 NN denotes lines
T13190 1124-1125 -COMMA- denotes ,
T13191 1126-1138 NN denotes FLAG-SHARPIN
T13192 1139-1142 VB denotes was
T13193 1143-1148 VB denotes found
T13194 1149-1151 TO denotes to
T13195 1152-1154 VB denotes be
T13196 1155-1174 JJ denotes cytoplasm-localized
R10778 T12992 T12991 arg1Of vivo,In
R10779 T12992 T12993 arg1Of vivo,and
R10780 T12995 T12993 arg2Of vitro,and
R10781 T12995 T12994 arg1Of vitro,in
R10782 T12996 T12992 arg1Of features,vivo
R10783 T12996 T12995 arg1Of features,vitro
R10784 T12996 T12997 arg1Of features,of
R10785 T12998 T12997 arg2Of SHARPIN,of
R10786 T13000 T12999 arg2Of A,(
R10787 T13001 T12999 arg3Of ),(
R10788 T13002 T13003 arg1Of COILS,and
R10789 T13004 T13003 arg2Of MotifScan,and
R10790 T13005 T12999 arg1Of programs,(
R10791 T13005 T13002 arg1Of programs,COILS
R10792 T13005 T13004 arg1Of programs,MotifScan
R10793 T13005 T13006 arg1Of programs,were
R10794 T13005 T13007 arg2Of programs,used
R10795 T13007 T13006 arg2Of used,were
R10796 T13009 T13007 arg3Of predict,used
R10797 T13009 T13008 arg1Of predict,to
R10798 T13011 T13009 arg2Of presence,predict
R10799 T13011 T13010 arg1Of presence,the
R10800 T13011 T13012 arg1Of presence,of
R10801 T13015 T13014 arg2Of coiled-coil,(
R10802 T13016 T13014 arg3Of ),(
R10803 T13017 T13013 arg1Of domain,CC
R10804 T13017 T13014 arg1Of domain,(
R10805 T13017 T13018 arg1Of domain,","
R10806 T13018 T13024 arg1Of ",",and
R10807 T13021 T13020 arg2Of ubiquitin-like,(
R10808 T13022 T13020 arg3Of ),(
R10809 T13023 T13018 arg2Of domain,","
R10810 T13023 T13019 arg1Of domain,UBL
R10811 T13023 T13020 arg1Of domain,(
R10812 T13024 T13012 arg2Of and,of
R10813 T13024 T13033 arg1Of and,which
R10814 T13024 T13034 arg1Of and,form
R10815 T13025 T13026 arg1Of ZFRBP,(
R10816 T13029 T13026 arg2Of protein,(
R10817 T13029 T13027 arg1Of protein,zinc-finger
R10818 T13029 T13028 arg1Of protein,Ran-Binding
R10819 T13029 T13030 arg1Of protein,2
R10820 T13031 T13026 arg3Of ),(
R10821 T13032 T13024 arg2Of domain,and
R10822 T13032 T13025 arg1Of domain,ZFRBP
R10823 T13037 T13034 arg2Of patterns,form
R10824 T13037 T13035 arg1Of patterns,similar
R10825 T13037 T13036 arg1Of patterns,motif
R10826 T13037 T13038 arg1Of patterns,in
R10827 T13037 T13042 arg1Of patterns,of
R10828 T13041 T13038 arg2Of protein,in
R10829 T13041 T13039 arg1Of protein,the
R10830 T13041 T13040 arg1Of protein,SHARPIN
R10831 T13043 T13044 arg1Of human,","
R10832 T13045 T13046 arg1Of mouse,and
R10833 T13046 T13044 arg2Of and,","
R10834 T13048 T13046 arg2Of origins.,and
R10835 T13048 T13047 arg1Of origins.,rat
R10836 T13048 T13049 arg1Of origins.,(
R10837 T13050 T13049 arg2Of B,(
R10838 T13051 T13049 arg3Of ),(
R10839 T13054 T13042 arg2Of females,of
R10840 T13054 T13043 arg1Of females,human
R10841 T13054 T13045 arg1Of females,mouse
R10842 T13054 T13048 arg1Of females,origins.
R10843 T13054 T13052 arg1Of females,Eight
R10844 T13054 T13053 arg1Of females,week-old
R10845 T13054 T13055 arg1Of females,of
R10846 T13056 T13057 arg1Of WT,and
R10847 T13058 T13057 arg2Of cpdm,and
R10848 T13059 T13055 arg2Of mice,of
R10849 T13059 T13056 arg1Of mice,WT
R10850 T13059 T13058 arg1Of mice,cpdm
R10851 T13062 T13060 arg1Of mice,The
R10852 T13062 T13061 arg1Of mice,mutant
R10853 T13062 T13066 arg1Of mice,develop
R10854 T13066 T13063 arg1Of develop,(
R10855 T13066 T13064 arg1Of develop,above
R10856 T13066 T13065 arg1Of develop,)
R10857 T13069 T13066 arg2Of inflammation,develop
R10858 T13069 T13067 arg1Of inflammation,progressive
R10859 T13069 T13068 arg1Of inflammation,skin
R10860 T13069 T13070 arg1Of inflammation,starting
R10861 T13070 T13071 arg1Of starting,at
R10862 T13073 T13072 arg1Of four,about
R10863 T13074 T13073 arg1Of weeks.,four
R10864 T13074 T13075 arg1Of weeks.,(
R10865 T13076 T13075 arg2Of C,(
R10866 T13077 T13075 arg3Of ),(
R10867 T13078 T13074 arg1Of Extramedullary,weeks.
R10868 T13080 T13071 arg2Of causes,at
R10869 T13080 T13078 arg1Of causes,Extramedullary
R10870 T13080 T13079 arg1Of causes,hematopoiesis
R10871 T13080 T13093 modOf causes,were
R10872 T13082 T13081 arg1Of enlargement,marked
R10873 T13082 T13083 arg1Of enlargement,of
R10874 T13082 T13093 arg1Of enlargement,were
R10875 T13082 T13094 arg2Of enlargement,incubated
R10876 T13085 T13083 arg2Of spleen,of
R10877 T13085 T13084 arg1Of spleen,the
R10878 T13085 T13086 arg1Of spleen,of
R10879 T13088 T13087 arg1Of mice.,cpdm
R10880 T13088 T13089 arg1Of mice.,(
R10881 T13090 T13089 arg2Of D,(
R10882 T13091 T13089 arg3Of ),(
R10883 T13092 T13086 arg2Of BMDC,of
R10884 T13092 T13088 arg1Of BMDC,mice.
R10885 T13094 T13093 arg2Of incubated,were
R10886 T13094 T13095 arg1Of incubated,in
R10887 T13097 T13098 arg1Of absence,or
R10888 T13098 T13095 arg2Of or,in
R10889 T13098 T13096 arg1Of or,the
R10890 T13098 T13100 arg1Of or,of
R10891 T13099 T13098 arg2Of presence,or
R10892 T13101 T13102 arg1Of 100,ng/ml
R10893 T13103 T13100 arg2Of LPS,of
R10894 T13103 T13101 arg1Of LPS,100
R10895 T13103 T13104 arg1Of LPS,for
R10896 T13106 T13104 arg2Of hours,for
R10897 T13106 T13105 arg1Of hours,4
R10898 T13109 T13107 arg1Of level,The
R10899 T13109 T13108 arg1Of level,mRNA
R10900 T13109 T13110 arg1Of level,of
R10901 T13109 T13112 arg1Of level,was
R10902 T13109 T13113 arg2Of level,measured
R10903 T13109 T13117 arg1Of level,presented
R10904 T13111 T13110 arg2Of Sharpin,of
R10905 T13113 T13112 arg2Of measured,was
R10906 T13113 T13114 arg1Of measured,by
R10907 T13113 T13116 arg1Of measured,and
R10908 T13115 T13114 arg2Of qRT-PCR,by
R10909 T13117 T13116 arg2Of presented,and
R10910 T13117 T13119 arg1Of presented,to
R10911 T13119 T13118 arg1Of to,relative
R10912 T13122 T13119 arg2Of expression,to
R10913 T13122 T13120 arg1Of expression,the
R10914 T13122 T13121 arg1Of expression,mRNA
R10915 T13122 T13123 arg1Of expression,in
R10916 T13126 T13123 arg2Of BMDC,in
R10917 T13126 T13124 arg1Of BMDC,non-stimulated
R10918 T13126 T13125 arg1Of BMDC,WT
R10919 T13127 T13128 arg1Of Bars,represent
R10920 T13128 T13140 arg1Of represent,;
R10921 T13132 T13128 arg2Of s.d.,represent
R10922 T13132 T13129 arg1Of s.d.,the
R10923 T13132 T13130 arg1Of s.d.,mean
R10924 T13132 T13131 arg1Of s.d.,±
R10925 T13132 T13133 arg1Of s.d.,of
R10926 T13139 T13133 arg2Of 0.05,of
R10927 T13139 T13134 arg1Of 0.05,3
R10928 T13139 T13135 arg1Of 0.05,mice.
R10929 T13139 T13136 arg1Of 0.05,*
R10930 T13139 T13137 arg1Of 0.05,P
R10931 T13139 T13138 arg1Of 0.05,<
R10932 T13144 T13143 arg1Of 0.001.,<
R10933 T13146 T13145 arg2Of E,(
R10934 T13147 T13145 arg3Of ),(
R10935 T13148 T13141 arg1Of Fibroblast,**
R10936 T13148 T13142 arg1Of Fibroblast,P
R10937 T13148 T13144 arg1Of Fibroblast,0.001.
R10938 T13148 T13145 arg1Of Fibroblast,(
R10939 T13148 T13149 arg1Of Fibroblast,(
R10940 T13148 T13152 arg1Of Fibroblast,and
R10941 T13150 T13149 arg2Of NIH3T3,(
R10942 T13151 T13149 arg3Of ),(
R10943 T13152 T13154 arg1Of and,(
R10944 T13153 T13152 arg2Of macrophages,and
R10945 T13155 T13154 arg2Of RAW264.7,(
R10946 T13156 T13154 arg3Of ),(
R10947 T13157 T13148 arg1Of cells,Fibroblast
R10948 T13157 T13153 arg1Of cells,macrophages
R10949 T13157 T13158 arg1Of cells,were
R10950 T13157 T13159 arg2Of cells,transfected
R10951 T13159 T13140 arg2Of transfected,;
R10952 T13159 T13158 arg2Of transfected,were
R10953 T13159 T13160 arg1Of transfected,with
R10954 T13164 T13160 arg2Of pFLAG-SHARPIN,with
R10955 T13164 T13161 arg1Of pFLAG-SHARPIN,the
R10956 T13164 T13162 arg1Of pFLAG-SHARPIN,expression
R10957 T13164 T13163 arg1Of pFLAG-SHARPIN,plasmid
R10958 T13167 T13165 arg2Of hours,After
R10959 T13167 T13166 arg1Of hours,48
R10960 T13169 T13170 arg1Of cells,were
R10961 T13169 T13171 arg2Of cells,fixed
R10962 T13169 T13173 arg2Of cells,probed
R10963 T13171 T13172 arg1Of fixed,and
R10964 T13172 T13165 arg1Of and,After
R10965 T13172 T13168 arg1Of and,","
R10966 T13172 T13170 arg2Of and,were
R10967 T13173 T13172 arg2Of probed,and
R10968 T13173 T13174 arg1Of probed,with
R10969 T13175 T13176 arg1Of anti-FLAG,and
R10970 T13177 T13176 arg2Of FITC-conjugated,and
R10971 T13179 T13174 arg2Of antibody,with
R10972 T13179 T13175 arg1Of antibody,anti-FLAG
R10973 T13179 T13177 arg1Of antibody,FITC-conjugated
R10974 T13179 T13178 arg1Of antibody,secondary
R10975 T13180 T13181 arg1Of Nuclei,were
R10976 T13180 T13182 arg2Of Nuclei,stained
R10977 T13182 T13181 arg2Of stained,were
R10978 T13182 T13183 arg1Of stained,with
R10979 T13184 T13183 arg2Of DAPI,with
R10980 T13189 T13185 arg2Of lines,In
R10981 T13189 T13186 arg1Of lines,both
R10982 T13189 T13187 arg2Of lines,transfected
R10983 T13189 T13188 arg1Of lines,cell
R10984 T13191 T13192 arg1Of FLAG-SHARPIN,was
R10985 T13191 T13193 arg2Of FLAG-SHARPIN,found
R10986 T13191 T13195 arg1Of FLAG-SHARPIN,be
R10987 T13191 T13196 arg1Of FLAG-SHARPIN,cytoplasm-localized
R10988 T13193 T13185 arg1Of found,In
R10989 T13193 T13190 arg1Of found,","
R10990 T13193 T13192 arg2Of found,was
R10991 T13195 T13193 arg3Of be,found
R10992 T13195 T13194 arg1Of be,to
R10993 T13196 T13195 arg2Of cytoplasm-localized,be

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12771 44-46 IN denotes In
T12772 47-51 NN denotes vivo
T12773 52-55 CC denotes and
T12774 56-58 IN denotes in
T12775 59-64 NN denotes vitro
T12776 65-73 NNS denotes features
T12777 74-76 IN denotes of
T12778 77-84 NNP denotes SHARPIN
T12779 84-85 . denotes .
T12780 86-87 -LRB- denotes (
T12781 87-88 NNP denotes A
T12782 88-89 -RRB- denotes )
T12783 90-95 NNP denotes COILS
T12784 96-99 CC denotes and
T12785 100-109 NNP denotes MotifScan
T12786 110-118 NNS denotes programs
T12787 119-123 VBD denotes were
T12788 124-128 VBN denotes used
T12789 129-131 TO denotes to
T12790 132-139 VB denotes predict
T12791 140-143 DT denotes the
T12792 144-152 NN denotes presence
T12793 153-155 IN denotes of
T12794 156-158 NNP denotes CC
T12795 159-160 -LRB- denotes (
T12796 160-171 NN denotes coiled-coil
T12797 171-172 -RRB- denotes )
T12798 173-179 NN denotes domain
T12799 179-180 , denotes ,
T12800 181-184 NNP denotes UBL
T12801 185-186 -LRB- denotes (
T12802 186-200 JJ denotes ubiquitin-like
T12803 200-201 -RRB- denotes )
T12804 202-208 NN denotes domain
T12805 209-212 CC denotes and
T12806 213-218 NNP denotes ZFRBP
T12807 219-220 -LRB- denotes (
T12808 220-231 NN denotes zinc-finger
T12809 232-243 NNP denotes Ran-Binding
T12810 244-251 NN denotes protein
T12811 252-253 CD denotes 2
T12812 253-254 -RRB- denotes )
T12813 255-261 NN denotes domain
T12814 262-267 WDT denotes which
T12815 268-272 VBP denotes form
T12816 273-280 JJ denotes similar
T12817 281-286 NN denotes motif
T12818 287-295 NNS denotes patterns
T12819 296-298 IN denotes in
T12820 299-302 DT denotes the
T12821 303-310 NNP denotes SHARPIN
T12822 311-318 NN denotes protein
T12823 319-321 IN denotes of
T12824 322-327 JJ denotes human
T12825 327-328 , denotes ,
T12826 329-334 NN denotes mouse
T12827 335-338 CC denotes and
T12828 339-342 NN denotes rat
T12829 343-350 NNS denotes origins
T12830 350-351 . denotes .
T12831 352-353 -LRB- denotes (
T12832 353-354 NNP denotes B
T12833 354-355 -RRB- denotes )
T12834 356-361 CD denotes Eight
T12835 362-370 JJ denotes week-old
T12836 371-378 NNS denotes females
T12837 379-381 IN denotes of
T12838 382-384 NNP denotes WT
T12839 385-388 CC denotes and
T12840 389-393 NN denotes cpdm
T12841 394-398 NNS denotes mice
T12842 398-399 . denotes .
T12843 400-403 DT denotes The
T12844 404-410 JJ denotes mutant
T12845 411-415 NNS denotes mice
T12846 416-417 -LRB- denotes (
T12847 417-422 IN denotes above
T12848 422-423 -RRB- denotes )
T12849 424-431 VB denotes develop
T12850 432-443 JJ denotes progressive
T12851 444-448 NN denotes skin
T12852 449-461 NN denotes inflammation
T12853 462-470 VBG denotes starting
T12854 471-473 IN denotes at
T12855 474-479 IN denotes about
T12856 480-484 CD denotes four
T12857 485-490 NNS denotes weeks
T12858 490-491 . denotes .
T12859 492-493 -LRB- denotes (
T12860 493-494 $ denotes C
T12861 494-495 -RRB- denotes )
T12862 496-510 JJ denotes Extramedullary
T12863 511-524 NN denotes hematopoiesis
T12864 525-531 VBZ denotes causes
T12865 532-538 JJ denotes marked
T12866 539-550 NN denotes enlargement
T12867 551-553 IN denotes of
T12868 554-557 DT denotes the
T12869 558-564 NN denotes spleen
T12870 565-567 IN denotes of
T12871 568-572 NN denotes cpdm
T12872 573-577 NNS denotes mice
T12873 577-578 . denotes .
T12874 579-580 -LRB- denotes (
T12875 580-581 NNP denotes D
T12876 581-582 -RRB- denotes )
T12877 583-587 NNP denotes BMDC
T12878 588-592 VBD denotes were
T12879 593-602 VBN denotes incubated
T12880 603-605 IN denotes in
T12881 606-609 DT denotes the
T12882 610-617 NN denotes absence
T12883 618-620 CC denotes or
T12884 621-629 NN denotes presence
T12885 630-632 IN denotes of
T12886 633-636 CD denotes 100
T12887 637-642 JJ denotes ng/ml
T12888 643-646 NNP denotes LPS
T12889 647-650 IN denotes for
T12890 651-652 CD denotes 4
T12891 653-658 NNS denotes hours
T12892 658-659 . denotes .
T12893 660-663 DT denotes The
T12894 664-668 NNP denotes mRNA
T12895 669-674 NN denotes level
T12896 675-677 IN denotes of
T12897 678-685 NNP denotes Sharpin
T12898 686-689 VBD denotes was
T12899 690-698 VBN denotes measured
T12900 699-701 IN denotes by
T12901 702-709 NNP denotes qRT-PCR
T12902 710-713 CC denotes and
T12903 714-723 VBN denotes presented
T12904 724-732 JJ denotes relative
T12905 733-735 TO denotes to
T12906 736-739 DT denotes the
T12907 740-744 NNP denotes mRNA
T12908 745-755 NN denotes expression
T12909 756-758 IN denotes in
T12910 759-773 JJ denotes non-stimulated
T12911 774-776 NNP denotes WT
T12912 777-781 NNP denotes BMDC
T12913 781-782 . denotes .
T12914 783-787 NNS denotes Bars
T12915 788-797 VBP denotes represent
T12916 798-801 DT denotes the
T12917 802-806 JJ denotes mean
T12918 807-808 NN denotes ±
T12919 809-813 NN denotes s.d.
T12920 814-816 IN denotes of
T12921 817-818 CD denotes 3
T12922 819-823 NNS denotes mice
T12923 823-824 . denotes .
T12924 825-826 SYM denotes *
T12925 827-828 NN denotes P
T12926 828-829 NN denotes <
T12927 829-833 CD denotes 0.05
T12928 833-834 : denotes ;
T12929 835-837 SYM denotes **
T12930 838-839 FW denotes P
T12931 839-840 FW denotes <
T12932 840-845 CD denotes 0.001
T12933 845-846 . denotes .
T12934 847-848 -LRB- denotes (
T12935 848-849 NNP denotes E
T12936 849-850 -RRB- denotes )
T12937 851-861 NNP denotes Fibroblast
T12938 862-863 -LRB- denotes (
T12939 863-869 NNP denotes NIH3T3
T12940 869-870 -RRB- denotes )
T12941 871-874 CC denotes and
T12942 875-886 NNS denotes macrophages
T12943 887-888 -LRB- denotes (
T12944 888-894 CD denotes RAW264
T12945 894-896 CD denotes .7
T12946 896-897 -RRB- denotes )
T12947 898-903 NNS denotes cells
T12948 904-908 VBD denotes were
T12949 909-920 VBN denotes transfected
T12950 921-925 IN denotes with
T12951 926-929 DT denotes the
T12952 930-940 NN denotes expression
T12953 941-948 VBD denotes plasmid
T12954 949-962 NNP denotes pFLAG-SHARPIN
T12955 962-963 . denotes .
T12956 964-969 IN denotes After
T12957 970-972 CD denotes 48
T12958 973-978 NNS denotes hours
T12959 978-979 , denotes ,
T12960 980-985 NNS denotes cells
T12961 986-990 VBD denotes were
T12962 991-996 VBN denotes fixed
T12963 997-1000 CC denotes and
T12964 1001-1007 VBN denotes probed
T12965 1008-1012 IN denotes with
T12966 1013-1022 JJ denotes anti-FLAG
T12967 1023-1026 CC denotes and
T12968 1027-1042 JJ denotes FITC-conjugated
T12969 1043-1052 JJ denotes secondary
T12970 1053-1061 NN denotes antibody
T12971 1061-1062 . denotes .
T12972 1063-1069 NNP denotes Nuclei
T12973 1070-1074 VBD denotes were
T12974 1075-1082 VBN denotes stained
T12975 1083-1087 IN denotes with
T12976 1088-1092 NNP denotes DAPI
T12977 1092-1093 . denotes .
T12978 1094-1096 IN denotes In
T12979 1097-1101 DT denotes both
T12980 1102-1113 VBN denotes transfected
T12981 1114-1118 NN denotes cell
T12982 1119-1124 NNS denotes lines
T12983 1124-1125 , denotes ,
T12984 1126-1138 NNP denotes FLAG-SHARPIN
T12985 1139-1142 VBD denotes was
T12986 1143-1148 VBN denotes found
T12987 1149-1151 TO denotes to
T12988 1152-1154 VB denotes be
T12989 1155-1174 JJ denotes cytoplasm-localized
T12990 1174-1175 . denotes .
R10558 T12771 T12771 ROOT In,In
R10559 T12772 T12771 pobj vivo,In
R10560 T12773 T12771 cc and,In
R10561 T12774 T12771 conj in,In
R10562 T12775 T12776 amod vitro,features
R10563 T12776 T12774 pobj features,in
R10564 T12777 T12776 prep of,features
R10565 T12778 T12777 pobj SHARPIN,of
R10566 T12779 T12771 punct .,In
R10567 T12780 T12788 punct (,used
R10568 T12781 T12786 nmod A,programs
R10569 T12782 T12781 punct ),A
R10570 T12783 T12786 nmod COILS,programs
R10571 T12784 T12783 cc and,COILS
R10572 T12785 T12783 conj MotifScan,COILS
R10573 T12786 T12788 nsubjpass programs,used
R10574 T12787 T12788 auxpass were,used
R10575 T12788 T12788 ROOT used,used
R10576 T12789 T12790 aux to,predict
R10577 T12790 T12788 xcomp predict,used
R10578 T12791 T12792 det the,presence
R10579 T12792 T12790 dobj presence,predict
R10580 T12793 T12792 prep of,presence
R10581 T12794 T12793 pobj CC,of
R10582 T12795 T12794 punct (,CC
R10583 T12796 T12798 nmod coiled-coil,domain
R10584 T12797 T12798 punct ),domain
R10585 T12798 T12794 appos domain,CC
R10586 T12799 T12794 punct ",",CC
R10587 T12800 T12794 conj UBL,CC
R10588 T12801 T12802 punct (,ubiquitin-like
R10589 T12802 T12800 appos ubiquitin-like,UBL
R10590 T12803 T12802 punct ),ubiquitin-like
R10591 T12804 T12793 pobj domain,of
R10592 T12805 T12804 cc and,domain
R10593 T12806 T12813 compound ZFRBP,domain
R10594 T12807 T12810 punct (,protein
R10595 T12808 T12809 compound zinc-finger,Ran-Binding
R10596 T12809 T12810 compound Ran-Binding,protein
R10597 T12810 T12806 appos protein,ZFRBP
R10598 T12811 T12810 nummod 2,protein
R10599 T12812 T12810 punct ),protein
R10600 T12813 T12792 appos domain,presence
R10601 T12814 T12815 nsubj which,form
R10602 T12815 T12813 relcl form,domain
R10603 T12816 T12818 amod similar,patterns
R10604 T12817 T12818 compound motif,patterns
R10605 T12818 T12815 dobj patterns,form
R10606 T12819 T12818 prep in,patterns
R10607 T12820 T12822 det the,protein
R10608 T12821 T12822 compound SHARPIN,protein
R10609 T12822 T12819 pobj protein,in
R10610 T12823 T12822 prep of,protein
R10611 T12824 T12826 amod human,mouse
R10612 T12825 T12824 punct ",",human
R10613 T12826 T12823 pobj mouse,of
R10614 T12827 T12826 cc and,mouse
R10615 T12828 T12829 compound rat,origins
R10616 T12829 T12826 conj origins,mouse
R10617 T12830 T12788 punct .,used
R10618 T12831 T12832 punct (,B
R10619 T12832 T12832 ROOT B,B
R10620 T12833 T12832 punct ),B
R10621 T12834 T12836 nummod Eight,females
R10622 T12835 T12836 amod week-old,females
R10623 T12836 T12836 ROOT females,females
R10624 T12837 T12836 prep of,females
R10625 T12838 T12841 nmod WT,mice
R10626 T12839 T12838 cc and,WT
R10627 T12840 T12841 compound cpdm,mice
R10628 T12841 T12837 pobj mice,of
R10629 T12842 T12836 punct .,females
R10630 T12843 T12845 det The,mice
R10631 T12844 T12845 amod mutant,mice
R10632 T12845 T12849 nsubj mice,develop
R10633 T12846 T12847 punct (,above
R10634 T12847 T12845 advmod above,mice
R10635 T12848 T12847 punct ),above
R10636 T12849 T12849 ROOT develop,develop
R10637 T12850 T12852 amod progressive,inflammation
R10638 T12851 T12852 compound skin,inflammation
R10639 T12852 T12849 dobj inflammation,develop
R10640 T12853 T12849 advcl starting,develop
R10641 T12854 T12853 prep at,starting
R10642 T12855 T12856 advmod about,four
R10643 T12856 T12857 nummod four,weeks
R10644 T12857 T12854 pobj weeks,at
R10645 T12858 T12849 punct .,develop
R10646 T12859 T12860 punct (,C
R10647 T12860 T12860 ROOT C,C
R10648 T12861 T12860 punct ),C
R10649 T12862 T12863 amod Extramedullary,hematopoiesis
R10650 T12863 T12864 nsubj hematopoiesis,causes
R10651 T12864 T12864 ROOT causes,causes
R10652 T12865 T12866 amod marked,enlargement
R10653 T12866 T12864 dobj enlargement,causes
R10654 T12867 T12866 prep of,enlargement
R10655 T12868 T12869 det the,spleen
R10656 T12869 T12867 pobj spleen,of
R10657 T12870 T12869 prep of,spleen
R10658 T12871 T12872 compound cpdm,mice
R10659 T12872 T12870 pobj mice,of
R10660 T12873 T12864 punct .,causes
R10661 T12874 T12877 punct (,BMDC
R10662 T12875 T12877 nmod D,BMDC
R10663 T12876 T12877 punct ),BMDC
R10664 T12877 T12879 nsubjpass BMDC,incubated
R10665 T12878 T12879 auxpass were,incubated
R10666 T12879 T12879 ROOT incubated,incubated
R10667 T12880 T12879 prep in,incubated
R10668 T12881 T12882 det the,absence
R10669 T12882 T12880 pobj absence,in
R10670 T12883 T12882 cc or,absence
R10671 T12884 T12882 conj presence,absence
R10672 T12885 T12882 prep of,absence
R10673 T12886 T12888 nummod 100,LPS
R10674 T12887 T12888 compound ng/ml,LPS
R10675 T12888 T12885 pobj LPS,of
R10676 T12889 T12879 prep for,incubated
R10677 T12890 T12891 nummod 4,hours
R10678 T12891 T12889 pobj hours,for
R10679 T12892 T12879 punct .,incubated
R10680 T12893 T12895 det The,level
R10681 T12894 T12895 compound mRNA,level
R10682 T12895 T12899 nsubjpass level,measured
R10683 T12896 T12895 prep of,level
R10684 T12897 T12896 pobj Sharpin,of
R10685 T12898 T12899 auxpass was,measured
R10686 T12899 T12899 ROOT measured,measured
R10687 T12900 T12899 agent by,measured
R10688 T12901 T12900 pobj qRT-PCR,by
R10689 T12902 T12899 cc and,measured
R10690 T12903 T12899 conj presented,measured
R10691 T12904 T12903 advmod relative,presented
R10692 T12905 T12904 prep to,relative
R10693 T12906 T12908 det the,expression
R10694 T12907 T12908 compound mRNA,expression
R10695 T12908 T12905 pobj expression,to
R10696 T12909 T12908 prep in,expression
R10697 T12910 T12912 compound non-stimulated,BMDC
R10698 T12911 T12912 compound WT,BMDC
R10699 T12912 T12909 pobj BMDC,in
R10700 T12913 T12899 punct .,measured
R10701 T12914 T12915 nsubj Bars,represent
R10702 T12915 T12915 ROOT represent,represent
R10703 T12916 T12919 det the,s.d.
R10704 T12917 T12919 amod mean,s.d.
R10705 T12918 T12919 compound ±,s.d.
R10706 T12919 T12915 dobj s.d.,represent
R10707 T12920 T12919 prep of,s.d.
R10708 T12921 T12922 nummod 3,mice
R10709 T12922 T12920 pobj mice,of
R10710 T12923 T12915 punct .,represent
R10711 T12924 T12930 punct *,P
R10712 T12925 T12927 compound P,0.05
R10713 T12926 T12927 compound <,0.05
R10714 T12927 T12924 npadvmod 0.05,*
R10715 T12928 T12930 punct ;,P
R10716 T12929 T12930 punct **,P
R10717 T12930 T12930 ROOT P,P
R10718 T12931 T12930 prep <,P
R10719 T12932 T12931 pobj 0.001,<
R10720 T12933 T12930 punct .,P
R10721 T12934 T12937 punct (,Fibroblast
R10722 T12935 T12937 nmod E,Fibroblast
R10723 T12936 T12937 punct ),Fibroblast
R10724 T12937 T12947 nmod Fibroblast,cells
R10725 T12938 T12939 punct (,NIH3T3
R10726 T12939 T12937 appos NIH3T3,Fibroblast
R10727 T12940 T12939 punct ),NIH3T3
R10728 T12941 T12937 cc and,Fibroblast
R10729 T12942 T12937 conj macrophages,Fibroblast
R10730 T12943 T12942 punct (,macrophages
R10731 T12944 T12945 nummod RAW264,.7
R10732 T12945 T12942 appos .7,macrophages
R10733 T12946 T12942 punct ),macrophages
R10734 T12947 T12949 nsubjpass cells,transfected
R10735 T12948 T12949 auxpass were,transfected
R10736 T12949 T12949 ROOT transfected,transfected
R10737 T12950 T12949 prep with,transfected
R10738 T12951 T12952 det the,expression
R10739 T12952 T12950 pobj expression,with
R10740 T12953 T12949 conj plasmid,transfected
R10741 T12954 T12953 nsubj pFLAG-SHARPIN,plasmid
R10742 T12955 T12949 punct .,transfected
R10743 T12956 T12962 prep After,fixed
R10744 T12957 T12958 nummod 48,hours
R10745 T12958 T12956 pobj hours,After
R10746 T12959 T12962 punct ",",fixed
R10747 T12960 T12962 nsubjpass cells,fixed
R10748 T12961 T12962 auxpass were,fixed
R10749 T12962 T12962 ROOT fixed,fixed
R10750 T12963 T12962 cc and,fixed
R10751 T12964 T12962 conj probed,fixed
R10752 T12965 T12964 prep with,probed
R10753 T12966 T12970 amod anti-FLAG,antibody
R10754 T12967 T12966 cc and,anti-FLAG
R10755 T12968 T12966 conj FITC-conjugated,anti-FLAG
R10756 T12969 T12970 amod secondary,antibody
R10757 T12970 T12965 pobj antibody,with
R10758 T12971 T12962 punct .,fixed
R10759 T12972 T12974 nsubjpass Nuclei,stained
R10760 T12973 T12974 auxpass were,stained
R10761 T12974 T12974 ROOT stained,stained
R10762 T12975 T12974 prep with,stained
R10763 T12976 T12975 pobj DAPI,with
R10764 T12977 T12974 punct .,stained
R10765 T12978 T12986 prep In,found
R10766 T12979 T12982 det both,lines
R10767 T12980 T12982 amod transfected,lines
R10768 T12981 T12982 compound cell,lines
R10769 T12982 T12978 pobj lines,In
R10770 T12983 T12986 punct ",",found
R10771 T12984 T12986 nsubjpass FLAG-SHARPIN,found
R10772 T12985 T12986 auxpass was,found
R10773 T12986 T12986 ROOT found,found
R10774 T12987 T12988 aux to,be
R10775 T12988 T12986 xcomp be,found
R10776 T12989 T12988 acomp cytoplasm-localized,be
R10777 T12990 T12986 punct .,found

UBERON-AE

Id Subject Object Predicate Lexical cue
T12754 558-564 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen

GO-BP

Id Subject Object Predicate Lexical cue
T13211 449-461 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T13212 511-524 http://purl.obolibrary.org/obo/GO_0030097 denotes hematopoiesis
T13213 1165-1174 http://purl.obolibrary.org/obo/GO_0051179 denotes localized

GO-MF

Id Subject Object Predicate Lexical cue
T13214 186-195 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T13215 1053-1061 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T13216 898-903 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T13217 980-985 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T13218 1114-1118 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T13219 1053-1061 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T13220 1053-1061 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T13221 1155-1164 http://purl.obolibrary.org/obo/GO_0005737 denotes cytoplasm

sentences

Id Subject Object Predicate Lexical cue
T12763 44-85 Sentence denotes In vivo and in vitro features of SHARPIN.
T12764 86-399 Sentence denotes (A) COILS and MotifScan programs were used to predict the presence of CC (coiled-coil) domain, UBL (ubiquitin-like) domain and ZFRBP (zinc-finger Ran-Binding protein 2) domain which form similar motif patterns in the SHARPIN protein of human, mouse and rat origins. (B) Eight week-old females of WT and cpdm mice.
T12765 400-659 Sentence denotes The mutant mice (above) develop progressive skin inflammation starting at about four weeks. (C) Extramedullary hematopoiesis causes marked enlargement of the spleen of cpdm mice. (D) BMDC were incubated in the absence or presence of 100 ng/ml LPS for 4 hours.
T12766 660-782 Sentence denotes The mRNA level of Sharpin was measured by qRT-PCR and presented relative to the mRNA expression in non-stimulated WT BMDC.
T12767 783-963 Sentence denotes Bars represent the mean ± s.d. of 3 mice. * P<0.05; ** P<0.001. (E) Fibroblast (NIH3T3) and macrophages (RAW264.7) cells were transfected with the expression plasmid pFLAG-SHARPIN.
T12768 964-1062 Sentence denotes After 48 hours, cells were fixed and probed with anti-FLAG and FITC-conjugated secondary antibody.
T12769 1063-1093 Sentence denotes Nuclei were stained with DAPI.
T12770 1094-1175 Sentence denotes In both transfected cell lines, FLAG-SHARPIN was found to be cytoplasm-localized.
T41 0-85 Sentence denotes 10.1371/journal.pone.0031809.g001 Figure 1 In vivo and in vitro features of SHARPIN.
T42 86-399 Sentence denotes (A) COILS and MotifScan programs were used to predict the presence of CC (coiled-coil) domain, UBL (ubiquitin-like) domain and ZFRBP (zinc-finger Ran-Binding protein 2) domain which form similar motif patterns in the SHARPIN protein of human, mouse and rat origins. (B) Eight week-old females of WT and cpdm mice.
T43 400-659 Sentence denotes The mutant mice (above) develop progressive skin inflammation starting at about four weeks. (C) Extramedullary hematopoiesis causes marked enlargement of the spleen of cpdm mice. (D) BMDC were incubated in the absence or presence of 100 ng/ml LPS for 4 hours.
T44 660-782 Sentence denotes The mRNA level of Sharpin was measured by qRT-PCR and presented relative to the mRNA expression in non-stimulated WT BMDC.
T45 783-963 Sentence denotes Bars represent the mean ± s.d. of 3 mice. * P<0.05; ** P<0.001. (E) Fibroblast (NIH3T3) and macrophages (RAW264.7) cells were transfected with the expression plasmid pFLAG-SHARPIN.
T46 964-1062 Sentence denotes After 48 hours, cells were fixed and probed with anti-FLAG and FITC-conjugated secondary antibody.
T47 1063-1093 Sentence denotes Nuclei were stained with DAPI.
T48 1094-1175 Sentence denotes In both transfected cell lines, FLAG-SHARPIN was found to be cytoplasm-localized.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T13238 77-84 Protein denotes SHARPIN
T13239 303-310 Protein denotes SHARPIN
T13240 664-674 Transcription denotes mRNA level true
T13241 678-685 Protein denotes Sharpin
T13242 955-962 Protein denotes SHARPIN
T13243 1131-1138 Protein denotes SHARPIN
T13244 1155-1164 Entity denotes cytoplasm
T13245 1165-1174 Localization denotes localized
R11000 T13241 T13240 themeOf Sharpin,mRNA level
R11001 T13243 T13245 themeOf SHARPIN,localized
R11002 T13244 T13245 locationOf cytoplasm,localized

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T13246 77-84 Protein denotes SHARPIN
T13247 181-184 Protein denotes UBL
T13248 186-195 Protein denotes ubiquitin
T13249 213-218 Protein denotes ZFRBP
T13250 220-253 Protein denotes zinc-finger Ran-Binding protein 2
T13251 303-318 Protein denotes SHARPIN protein
T13252 678-685 Protein denotes Sharpin
T13253 774-781 Protein denotes WT BMDC
T13254 745-755 Transcription denotes expression
T13255 1126-1130 Protein denotes FLAG
T13256 1131-1138 Protein denotes SHARPIN
R11003 T13253 T13254 themeOf WT BMDC,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T12755 77-84 Protein denotes SHARPIN
T12756 303-310 Protein denotes SHARPIN
T12757 664-674 Transcription denotes mRNA level true
T12758 678-685 Protein denotes Sharpin
T12759 955-962 Protein denotes SHARPIN
T12760 1131-1138 Protein denotes SHARPIN
T12761 1155-1164 Entity denotes cytoplasm
T12762 1165-1174 Localization denotes localized
R10555 T12758 T12757 themeOf Sharpin,mRNA level
R10556 T12760 T12762 themeOf SHARPIN,localized
R10557 T12761 T12762 locationOf cytoplasm,localized

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13197 77-84 Q9H0F6 denotes SHARPIN
T13198 303-310 Q9H0F6 denotes SHARPIN
T13199 678-685 Q9H0F6 denotes Sharpin
T13200 724-732 Q04864 denotes relative
T13201 955-962 Q9H0F6 denotes SHARPIN
T13202 1131-1138 Q9H0F6 denotes SHARPIN

test2

Id Subject Object Predicate Lexical cue Speculation
T12745 77-84 Protein denotes SHARPIN true
T12746 303-310 Protein denotes SHARPIN
T12747 664-674 Transcription denotes mRNA level
T12748 678-685 Protein denotes Sharpin
T12749 740-755 Transcription denotes mRNA expression
T12750 930-940 Gene_expression denotes expression
T12751 955-962 Protein denotes SHARPIN
T12752 1131-1138 Protein denotes SHARPIN
T12753 1165-1174 Localization denotes localized
R10552 T12748 T12749 themeOf Sharpin,mRNA expression
R10553 T12748 T12747 themeOf Sharpin,mRNA level
R10554 T12752 T12753 themeOf SHARPIN,localized