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PMC:3279418 / 31450-31852 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12001 0-2 FW denotes In
T12002 3-8 FW denotes vitro
T12003 9-17 NN denotes cytokine
T12004 18-27 NN denotes secretion
T12005 28-30 IN denotes by
T12006 31-35 NN denotes BMDC
T12007 36-39 DT denotes The
T12008 40-44 NN denotes BMDC
T12009 45-49 VB denotes were
T12010 50-58 VB denotes cultured
T12011 59-61 IN denotes in
T12012 62-72 JJ denotes triplicate
T12013 73-78 NN denotes wells
T12014 79-81 IN denotes of
T12015 82-89 JJ denotes 24-well
T12016 90-92 CC denotes or
T12017 93-100 JJ denotes 96-well
T12018 101-107 NN denotes plates
T12023 122-130 NN denotes cells/mL
T12024 130-131 -COMMA- denotes ,
T12025 132-144 RB denotes respectively
T12026 144-145 -COMMA- denotes ,
T12027 146-148 IN denotes in
T12028 149-158 NN denotes RPMI-1640
T12029 159-167 JJ denotes complete
T12030 168-174 NN denotes medium
T12031 176-179 DT denotes The
T12032 180-185 NN denotes cells
T12033 186-190 VB denotes were
T12034 191-197 VB denotes washed
T12035 198-201 CC denotes and
T12036 202-212 VB denotes stimulated
T12037 213-217 IN denotes with
T12038 218-221 CD denotes 100
T12039 222-227 NN denotes ng/mL
T12040 228-231 NN denotes LPS
T12041 232-234 CC denotes or
T12042 235-237 CD denotes 25
T12043 238-243 NN denotes µg/mL
T12044 244-248 NN denotes poly
T12045 249-250 CD denotes I
T12046 250-251 -COLON- denotes :
T12047 251-253 NNP denotes C.
T12048 254-259 IN denotes After
T12049 260-262 CD denotes 24
T12050 263-268 NN denotes hours
T12051 268-269 -COMMA- denotes ,
T12052 270-282 NN denotes supernatants
T12053 283-287 VB denotes were
T12054 288-297 VB denotes harvested
T12055 298-301 IN denotes for
T12056 302-307 NN denotes ELISA
T12057 308-316 NN denotes analysis
T12058 318-321 DT denotes The
T12059 322-330 NN denotes presence
T12060 331-333 IN denotes of
T12061 334-341 NN denotes nitrite
T12062 342-344 IN denotes in
T12063 345-348 DT denotes the
T12064 349-361 NN denotes supernatants
T12065 362-365 VB denotes was
T12066 366-376 VB denotes determined
T12067 377-382 VB denotes using
T12068 383-386 DT denotes the
T12069 387-393 NNP denotes Griess
T12070 394-401 NN denotes reagent
T12019 108-110 IN denotes at
T12020 111-114 CD denotes 106
T12021 115-117 CC denotes or
T12022 118-121 CD denotes 105
R9960 T12002 T12001 arg1Of vitro,In
R9961 T12004 T12002 arg1Of secretion,vitro
R9962 T12004 T12003 arg1Of secretion,cytokine
R9963 T12004 T12005 arg1Of secretion,by
R9964 T12006 T12005 arg2Of BMDC,by
R9965 T12008 T12007 arg1Of BMDC,The
R9966 T12008 T12009 arg1Of BMDC,were
R9967 T12008 T12010 arg2Of BMDC,cultured
R9968 T12010 T12009 arg2Of cultured,were
R9969 T12010 T12011 arg1Of cultured,in
R9970 T12010 T12024 arg1Of cultured,","
R9971 T12010 T12025 arg1Of cultured,respectively
R9972 T12010 T12026 arg1Of cultured,","
R9973 T12010 T12027 arg1Of cultured,in
R9974 T12013 T12011 arg2Of wells,in
R9975 T12013 T12012 arg1Of wells,triplicate
R9976 T12013 T12014 arg1Of wells,of
R9977 T12015 T12016 arg1Of 24-well,or
R9978 T12017 T12016 arg2Of 96-well,or
R9979 T12018 T12014 arg2Of plates,of
R9980 T12018 T12015 arg1Of plates,24-well
R9981 T12018 T12017 arg1Of plates,96-well
R9982 T12018 T12019 arg1Of plates,at
R9983 T12020 T12021 arg1Of 106,or
R9984 T12022 T12021 arg2Of 105,or
R9985 T12023 T12019 arg2Of cells/mL,at
R9986 T12023 T12020 arg1Of cells/mL,106
R9987 T12023 T12022 arg1Of cells/mL,105
R9988 T12030 T12027 arg2Of medium,in
R9989 T12030 T12028 arg1Of medium,RPMI-1640
R9990 T12030 T12029 arg1Of medium,complete
R9991 T12032 T12031 arg1Of cells,The
R9992 T12032 T12033 arg1Of cells,were
R9993 T12032 T12034 arg2Of cells,washed
R9994 T12032 T12036 arg2Of cells,stimulated
R9995 T12034 T12035 arg1Of washed,and
R9996 T12035 T12033 arg2Of and,were
R9997 T12035 T12048 arg1Of and,After
R9998 T12035 T12051 arg1Of and,","
R9999 T12036 T12035 arg2Of stimulated,and
R10000 T12036 T12037 arg1Of stimulated,with
R10001 T12038 T12039 arg1Of 100,ng/mL
R10002 T12040 T12038 arg1Of LPS,100
R10003 T12040 T12041 arg1Of LPS,or
R10004 T12041 T12037 arg2Of or,with
R10005 T12041 T12046 arg1Of or,:
R10006 T12044 T12041 arg2Of poly,or
R10007 T12044 T12042 arg1Of poly,25
R10008 T12044 T12043 arg1Of poly,µg/mL
R10009 T12044 T12045 arg1Of poly,I
R10010 T12047 T12046 arg2Of C.,:
R10011 T12050 T12048 arg2Of hours,After
R10012 T12050 T12049 arg1Of hours,24
R10013 T12052 T12053 arg1Of supernatants,were
R10014 T12052 T12054 arg2Of supernatants,harvested
R10015 T12054 T12051 arg2Of harvested,","
R10016 T12054 T12053 arg2Of harvested,were
R10017 T12054 T12055 arg1Of harvested,for
R10018 T12057 T12055 arg2Of analysis,for
R10019 T12057 T12056 arg1Of analysis,ELISA
R10020 T12059 T12058 arg1Of presence,The
R10021 T12059 T12060 arg1Of presence,of
R10022 T12059 T12062 arg1Of presence,in
R10023 T12059 T12065 arg1Of presence,was
R10024 T12059 T12066 arg2Of presence,determined
R10025 T12061 T12060 arg2Of nitrite,of
R10026 T12064 T12062 arg2Of supernatants,in
R10027 T12064 T12063 arg1Of supernatants,the
R10028 T12066 T12065 arg2Of determined,was
R10029 T12067 T12066 arg3Of using,determined
R10030 T12070 T12067 arg2Of reagent,using
R10031 T12070 T12068 arg1Of reagent,the
R10032 T12070 T12069 arg1Of reagent,Griess

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11925 0-2 IN denotes In
T11926 3-8 NN denotes vitro
T11927 9-17 NN denotes cytokine
T11928 18-27 NN denotes secretion
T11929 28-30 IN denotes by
T11930 31-35 NNP denotes BMDC
T11931 36-39 NNP denotes The
T11932 40-44 NNP denotes BMDC
T11933 45-49 VBD denotes were
T11934 50-58 VBN denotes cultured
T11935 59-61 IN denotes in
T11936 62-72 NN denotes triplicate
T11937 73-78 NNS denotes wells
T11938 79-81 IN denotes of
T11939 82-89 JJ denotes 24-well
T11940 90-92 CC denotes or
T11941 93-100 JJ denotes 96-well
T11942 101-107 NNS denotes plates
T11943 108-110 IN denotes at
T11944 111-114 CD denotes 106
T11945 115-117 CC denotes or
T11946 118-121 CD denotes 105
T11947 122-130 NNP denotes cells/mL
T11948 130-131 , denotes ,
T11949 132-144 RB denotes respectively
T11950 144-145 , denotes ,
T11951 146-148 IN denotes in
T11952 149-158 NN denotes RPMI-1640
T11953 159-167 JJ denotes complete
T11954 168-174 NN denotes medium
T11955 174-175 . denotes .
T11956 176-179 DT denotes The
T11957 180-185 NNS denotes cells
T11958 186-190 VBD denotes were
T11959 191-197 VBN denotes washed
T11960 198-201 CC denotes and
T11961 202-212 VBN denotes stimulated
T11962 213-217 IN denotes with
T11963 218-221 CD denotes 100
T11964 222-227 NNP denotes ng/mL
T11965 228-231 NNP denotes LPS
T11966 232-234 CC denotes or
T11967 235-237 CD denotes 25
T11968 238-240 NN denotes µg
T11969 240-241 CD denotes /
T11970 241-243 NNP denotes mL
T11971 244-248 NN denotes poly
T11972 249-250 PRP denotes I
T11973 250-251 : denotes :
T11974 251-252 NNP denotes C
T11975 252-253 . denotes .
T11976 254-259 IN denotes After
T11977 260-262 CD denotes 24
T11978 263-268 NNS denotes hours
T11979 268-269 , denotes ,
T11980 270-282 NNS denotes supernatants
T11981 283-287 VBD denotes were
T11982 288-297 VBN denotes harvested
T11983 298-301 IN denotes for
T11984 302-307 NNP denotes ELISA
T11985 308-316 NN denotes analysis
T11986 316-317 . denotes .
T11987 318-321 DT denotes The
T11988 322-330 NN denotes presence
T11989 331-333 IN denotes of
T11990 334-341 NN denotes nitrite
T11991 342-344 IN denotes in
T11992 345-348 DT denotes the
T11993 349-361 NNS denotes supernatants
T11994 362-365 VBD denotes was
T11995 366-376 VBN denotes determined
T11996 377-382 VBG denotes using
T11997 383-386 DT denotes the
T11998 387-393 NNP denotes Griess
T11999 394-401 NN denotes reagent
T12000 401-402 . denotes .
R9884 T11925 T11934 prep In,cultured
R9885 T11926 T11928 amod vitro,secretion
R9886 T11927 T11928 compound cytokine,secretion
R9887 T11928 T11925 pobj secretion,In
R9888 T11929 T11928 prep by,secretion
R9889 T11930 T11929 pobj BMDC,by
R9890 T11931 T11932 det The,BMDC
R9891 T11932 T11934 nsubjpass BMDC,cultured
R9892 T11933 T11934 auxpass were,cultured
R9893 T11934 T11934 ROOT cultured,cultured
R9894 T11935 T11934 prep in,cultured
R9895 T11936 T11937 amod triplicate,wells
R9896 T11937 T11935 pobj wells,in
R9897 T11938 T11937 prep of,wells
R9898 T11939 T11942 amod 24-well,plates
R9899 T11940 T11939 cc or,24-well
R9900 T11941 T11939 conj 96-well,24-well
R9901 T11942 T11938 pobj plates,of
R9902 T11943 T11934 prep at,cultured
R9903 T11944 T11947 nummod 106,cells/mL
R9904 T11945 T11944 cc or,106
R9905 T11946 T11944 conj 105,106
R9906 T11947 T11943 pobj cells/mL,at
R9907 T11948 T11947 punct ",",cells/mL
R9908 T11949 T11947 npadvmod respectively,cells/mL
R9909 T11950 T11947 punct ",",cells/mL
R9910 T11951 T11947 prep in,cells/mL
R9911 T11952 T11954 amod RPMI-1640,medium
R9912 T11953 T11954 amod complete,medium
R9913 T11954 T11951 pobj medium,in
R9914 T11955 T11934 punct .,cultured
R9915 T11956 T11957 det The,cells
R9916 T11957 T11959 nsubjpass cells,washed
R9917 T11958 T11959 auxpass were,washed
R9918 T11959 T11959 ROOT washed,washed
R9919 T11960 T11959 cc and,washed
R9920 T11961 T11959 conj stimulated,washed
R9921 T11962 T11961 prep with,stimulated
R9922 T11963 T11965 nummod 100,LPS
R9923 T11964 T11965 compound ng/mL,LPS
R9924 T11965 T11962 pobj LPS,with
R9925 T11966 T11965 cc or,LPS
R9926 T11967 T11969 quantmod 25,/
R9927 T11968 T11969 quantmod µg,/
R9928 T11969 T11972 npadvmod /,I
R9929 T11970 T11971 compound mL,poly
R9930 T11971 T11972 dep poly,I
R9931 T11972 T11965 conj I,LPS
R9932 T11973 T11972 punct :,I
R9933 T11974 T11972 appos C,I
R9934 T11975 T11959 punct .,washed
R9935 T11976 T11982 prep After,harvested
R9936 T11977 T11978 nummod 24,hours
R9937 T11978 T11976 pobj hours,After
R9938 T11979 T11982 punct ",",harvested
R9939 T11980 T11982 nsubjpass supernatants,harvested
R9940 T11981 T11982 auxpass were,harvested
R9941 T11982 T11982 ROOT harvested,harvested
R9942 T11983 T11982 prep for,harvested
R9943 T11984 T11985 compound ELISA,analysis
R9944 T11985 T11983 pobj analysis,for
R9945 T11986 T11982 punct .,harvested
R9946 T11987 T11988 det The,presence
R9947 T11988 T11995 nsubjpass presence,determined
R9948 T11989 T11988 prep of,presence
R9949 T11990 T11989 pobj nitrite,of
R9950 T11991 T11988 prep in,presence
R9951 T11992 T11993 det the,supernatants
R9952 T11993 T11991 pobj supernatants,in
R9953 T11994 T11995 auxpass was,determined
R9954 T11995 T11995 ROOT determined,determined
R9955 T11996 T11995 advcl using,determined
R9956 T11997 T11999 det the,reagent
R9957 T11998 T11999 compound Griess,reagent
R9958 T11999 T11996 dobj reagent,using
R9959 T12000 T11995 punct .,determined

GO-BP

Id Subject Object Predicate Lexical cue
T12075 9-27 http://purl.obolibrary.org/obo/GO_0050663 denotes cytokine secretion
T12076 18-27 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

GO-CC

Id Subject Object Predicate Lexical cue
T12077 122-127 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T12078 180-185 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11921 0-35 Sentence denotes In vitro cytokine secretion by BMDC
T11922 36-175 Sentence denotes The BMDC were cultured in triplicate wells of 24-well or 96-well plates at 106 or 105 cells/mL, respectively, in RPMI-1640 complete medium.
T11923 176-317 Sentence denotes The cells were washed and stimulated with 100 ng/mL LPS or 25 µg/mL poly I:C. After 24 hours, supernatants were harvested for ELISA analysis.
T11924 318-402 Sentence denotes The presence of nitrite in the supernatants was determined using the Griess reagent.
T220 0-35 Sentence denotes In vitro cytokine secretion by BMDC
T221 36-175 Sentence denotes The BMDC were cultured in triplicate wells of 24-well or 96-well plates at 106 or 105 cells/mL, respectively, in RPMI-1640 complete medium.
T222 176-253 Sentence denotes The cells were washed and stimulated with 100 ng/mL LPS or 25 µg/mL poly I:C.
T223 254-317 Sentence denotes After 24 hours, supernatants were harvested for ELISA analysis.
T224 318-402 Sentence denotes The presence of nitrite in the supernatants was determined using the Griess reagent.

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T12079 149-174 Protein denotes RPMI-1640 complete medium