PMC:3279418 / 31450-31852
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12001 | 0-2 | FW | denotes | In |
T12002 | 3-8 | FW | denotes | vitro |
T12003 | 9-17 | NN | denotes | cytokine |
T12004 | 18-27 | NN | denotes | secretion |
T12005 | 28-30 | IN | denotes | by |
T12006 | 31-35 | NN | denotes | BMDC |
T12007 | 36-39 | DT | denotes | The |
T12008 | 40-44 | NN | denotes | BMDC |
T12009 | 45-49 | VB | denotes | were |
T12010 | 50-58 | VB | denotes | cultured |
T12011 | 59-61 | IN | denotes | in |
T12012 | 62-72 | JJ | denotes | triplicate |
T12013 | 73-78 | NN | denotes | wells |
T12014 | 79-81 | IN | denotes | of |
T12015 | 82-89 | JJ | denotes | 24-well |
T12016 | 90-92 | CC | denotes | or |
T12017 | 93-100 | JJ | denotes | 96-well |
T12018 | 101-107 | NN | denotes | plates |
T12023 | 122-130 | NN | denotes | cells/mL |
T12024 | 130-131 | -COMMA- | denotes | , |
T12025 | 132-144 | RB | denotes | respectively |
T12026 | 144-145 | -COMMA- | denotes | , |
T12027 | 146-148 | IN | denotes | in |
T12028 | 149-158 | NN | denotes | RPMI-1640 |
T12029 | 159-167 | JJ | denotes | complete |
T12030 | 168-174 | NN | denotes | medium |
T12031 | 176-179 | DT | denotes | The |
T12032 | 180-185 | NN | denotes | cells |
T12033 | 186-190 | VB | denotes | were |
T12034 | 191-197 | VB | denotes | washed |
T12035 | 198-201 | CC | denotes | and |
T12036 | 202-212 | VB | denotes | stimulated |
T12037 | 213-217 | IN | denotes | with |
T12038 | 218-221 | CD | denotes | 100 |
T12039 | 222-227 | NN | denotes | ng/mL |
T12040 | 228-231 | NN | denotes | LPS |
T12041 | 232-234 | CC | denotes | or |
T12042 | 235-237 | CD | denotes | 25 |
T12043 | 238-243 | NN | denotes | µg/mL |
T12044 | 244-248 | NN | denotes | poly |
T12045 | 249-250 | CD | denotes | I |
T12046 | 250-251 | -COLON- | denotes | : |
T12047 | 251-253 | NNP | denotes | C. |
T12048 | 254-259 | IN | denotes | After |
T12049 | 260-262 | CD | denotes | 24 |
T12050 | 263-268 | NN | denotes | hours |
T12051 | 268-269 | -COMMA- | denotes | , |
T12052 | 270-282 | NN | denotes | supernatants |
T12053 | 283-287 | VB | denotes | were |
T12054 | 288-297 | VB | denotes | harvested |
T12055 | 298-301 | IN | denotes | for |
T12056 | 302-307 | NN | denotes | ELISA |
T12057 | 308-316 | NN | denotes | analysis |
T12058 | 318-321 | DT | denotes | The |
T12059 | 322-330 | NN | denotes | presence |
T12060 | 331-333 | IN | denotes | of |
T12061 | 334-341 | NN | denotes | nitrite |
T12062 | 342-344 | IN | denotes | in |
T12063 | 345-348 | DT | denotes | the |
T12064 | 349-361 | NN | denotes | supernatants |
T12065 | 362-365 | VB | denotes | was |
T12066 | 366-376 | VB | denotes | determined |
T12067 | 377-382 | VB | denotes | using |
T12068 | 383-386 | DT | denotes | the |
T12069 | 387-393 | NNP | denotes | Griess |
T12070 | 394-401 | NN | denotes | reagent |
T12019 | 108-110 | IN | denotes | at |
T12020 | 111-114 | CD | denotes | 106 |
T12021 | 115-117 | CC | denotes | or |
T12022 | 118-121 | CD | denotes | 105 |
R9960 | T12002 | T12001 | arg1Of | vitro,In |
R9961 | T12004 | T12002 | arg1Of | secretion,vitro |
R9962 | T12004 | T12003 | arg1Of | secretion,cytokine |
R9963 | T12004 | T12005 | arg1Of | secretion,by |
R9964 | T12006 | T12005 | arg2Of | BMDC,by |
R9965 | T12008 | T12007 | arg1Of | BMDC,The |
R9966 | T12008 | T12009 | arg1Of | BMDC,were |
R9967 | T12008 | T12010 | arg2Of | BMDC,cultured |
R9968 | T12010 | T12009 | arg2Of | cultured,were |
R9969 | T12010 | T12011 | arg1Of | cultured,in |
R9970 | T12010 | T12024 | arg1Of | cultured,"," |
R9971 | T12010 | T12025 | arg1Of | cultured,respectively |
R9972 | T12010 | T12026 | arg1Of | cultured,"," |
R9973 | T12010 | T12027 | arg1Of | cultured,in |
R9974 | T12013 | T12011 | arg2Of | wells,in |
R9975 | T12013 | T12012 | arg1Of | wells,triplicate |
R9976 | T12013 | T12014 | arg1Of | wells,of |
R9977 | T12015 | T12016 | arg1Of | 24-well,or |
R9978 | T12017 | T12016 | arg2Of | 96-well,or |
R9979 | T12018 | T12014 | arg2Of | plates,of |
R9980 | T12018 | T12015 | arg1Of | plates,24-well |
R9981 | T12018 | T12017 | arg1Of | plates,96-well |
R9982 | T12018 | T12019 | arg1Of | plates,at |
R9983 | T12020 | T12021 | arg1Of | 106,or |
R9984 | T12022 | T12021 | arg2Of | 105,or |
R9985 | T12023 | T12019 | arg2Of | cells/mL,at |
R9986 | T12023 | T12020 | arg1Of | cells/mL,106 |
R9987 | T12023 | T12022 | arg1Of | cells/mL,105 |
R9988 | T12030 | T12027 | arg2Of | medium,in |
R9989 | T12030 | T12028 | arg1Of | medium,RPMI-1640 |
R9990 | T12030 | T12029 | arg1Of | medium,complete |
R9991 | T12032 | T12031 | arg1Of | cells,The |
R9992 | T12032 | T12033 | arg1Of | cells,were |
R9993 | T12032 | T12034 | arg2Of | cells,washed |
R9994 | T12032 | T12036 | arg2Of | cells,stimulated |
R9995 | T12034 | T12035 | arg1Of | washed,and |
R9996 | T12035 | T12033 | arg2Of | and,were |
R9997 | T12035 | T12048 | arg1Of | and,After |
R9998 | T12035 | T12051 | arg1Of | and,"," |
R9999 | T12036 | T12035 | arg2Of | stimulated,and |
R10000 | T12036 | T12037 | arg1Of | stimulated,with |
R10001 | T12038 | T12039 | arg1Of | 100,ng/mL |
R10002 | T12040 | T12038 | arg1Of | LPS,100 |
R10003 | T12040 | T12041 | arg1Of | LPS,or |
R10004 | T12041 | T12037 | arg2Of | or,with |
R10005 | T12041 | T12046 | arg1Of | or,: |
R10006 | T12044 | T12041 | arg2Of | poly,or |
R10007 | T12044 | T12042 | arg1Of | poly,25 |
R10008 | T12044 | T12043 | arg1Of | poly,µg/mL |
R10009 | T12044 | T12045 | arg1Of | poly,I |
R10010 | T12047 | T12046 | arg2Of | C.,: |
R10011 | T12050 | T12048 | arg2Of | hours,After |
R10012 | T12050 | T12049 | arg1Of | hours,24 |
R10013 | T12052 | T12053 | arg1Of | supernatants,were |
R10014 | T12052 | T12054 | arg2Of | supernatants,harvested |
R10015 | T12054 | T12051 | arg2Of | harvested,"," |
R10016 | T12054 | T12053 | arg2Of | harvested,were |
R10017 | T12054 | T12055 | arg1Of | harvested,for |
R10018 | T12057 | T12055 | arg2Of | analysis,for |
R10019 | T12057 | T12056 | arg1Of | analysis,ELISA |
R10020 | T12059 | T12058 | arg1Of | presence,The |
R10021 | T12059 | T12060 | arg1Of | presence,of |
R10022 | T12059 | T12062 | arg1Of | presence,in |
R10023 | T12059 | T12065 | arg1Of | presence,was |
R10024 | T12059 | T12066 | arg2Of | presence,determined |
R10025 | T12061 | T12060 | arg2Of | nitrite,of |
R10026 | T12064 | T12062 | arg2Of | supernatants,in |
R10027 | T12064 | T12063 | arg1Of | supernatants,the |
R10028 | T12066 | T12065 | arg2Of | determined,was |
R10029 | T12067 | T12066 | arg3Of | using,determined |
R10030 | T12070 | T12067 | arg2Of | reagent,using |
R10031 | T12070 | T12068 | arg1Of | reagent,the |
R10032 | T12070 | T12069 | arg1Of | reagent,Griess |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11925 | 0-2 | IN | denotes | In |
T11926 | 3-8 | NN | denotes | vitro |
T11927 | 9-17 | NN | denotes | cytokine |
T11928 | 18-27 | NN | denotes | secretion |
T11929 | 28-30 | IN | denotes | by |
T11930 | 31-35 | NNP | denotes | BMDC |
T11931 | 36-39 | NNP | denotes | The |
T11932 | 40-44 | NNP | denotes | BMDC |
T11933 | 45-49 | VBD | denotes | were |
T11934 | 50-58 | VBN | denotes | cultured |
T11935 | 59-61 | IN | denotes | in |
T11936 | 62-72 | NN | denotes | triplicate |
T11937 | 73-78 | NNS | denotes | wells |
T11938 | 79-81 | IN | denotes | of |
T11939 | 82-89 | JJ | denotes | 24-well |
T11940 | 90-92 | CC | denotes | or |
T11941 | 93-100 | JJ | denotes | 96-well |
T11942 | 101-107 | NNS | denotes | plates |
T11943 | 108-110 | IN | denotes | at |
T11944 | 111-114 | CD | denotes | 106 |
T11945 | 115-117 | CC | denotes | or |
T11946 | 118-121 | CD | denotes | 105 |
T11947 | 122-130 | NNP | denotes | cells/mL |
T11948 | 130-131 | , | denotes | , |
T11949 | 132-144 | RB | denotes | respectively |
T11950 | 144-145 | , | denotes | , |
T11951 | 146-148 | IN | denotes | in |
T11952 | 149-158 | NN | denotes | RPMI-1640 |
T11953 | 159-167 | JJ | denotes | complete |
T11954 | 168-174 | NN | denotes | medium |
T11955 | 174-175 | . | denotes | . |
T11956 | 176-179 | DT | denotes | The |
T11957 | 180-185 | NNS | denotes | cells |
T11958 | 186-190 | VBD | denotes | were |
T11959 | 191-197 | VBN | denotes | washed |
T11960 | 198-201 | CC | denotes | and |
T11961 | 202-212 | VBN | denotes | stimulated |
T11962 | 213-217 | IN | denotes | with |
T11963 | 218-221 | CD | denotes | 100 |
T11964 | 222-227 | NNP | denotes | ng/mL |
T11965 | 228-231 | NNP | denotes | LPS |
T11966 | 232-234 | CC | denotes | or |
T11967 | 235-237 | CD | denotes | 25 |
T11968 | 238-240 | NN | denotes | µg |
T11969 | 240-241 | CD | denotes | / |
T11970 | 241-243 | NNP | denotes | mL |
T11971 | 244-248 | NN | denotes | poly |
T11972 | 249-250 | PRP | denotes | I |
T11973 | 250-251 | : | denotes | : |
T11974 | 251-252 | NNP | denotes | C |
T11975 | 252-253 | . | denotes | . |
T11976 | 254-259 | IN | denotes | After |
T11977 | 260-262 | CD | denotes | 24 |
T11978 | 263-268 | NNS | denotes | hours |
T11979 | 268-269 | , | denotes | , |
T11980 | 270-282 | NNS | denotes | supernatants |
T11981 | 283-287 | VBD | denotes | were |
T11982 | 288-297 | VBN | denotes | harvested |
T11983 | 298-301 | IN | denotes | for |
T11984 | 302-307 | NNP | denotes | ELISA |
T11985 | 308-316 | NN | denotes | analysis |
T11986 | 316-317 | . | denotes | . |
T11987 | 318-321 | DT | denotes | The |
T11988 | 322-330 | NN | denotes | presence |
T11989 | 331-333 | IN | denotes | of |
T11990 | 334-341 | NN | denotes | nitrite |
T11991 | 342-344 | IN | denotes | in |
T11992 | 345-348 | DT | denotes | the |
T11993 | 349-361 | NNS | denotes | supernatants |
T11994 | 362-365 | VBD | denotes | was |
T11995 | 366-376 | VBN | denotes | determined |
T11996 | 377-382 | VBG | denotes | using |
T11997 | 383-386 | DT | denotes | the |
T11998 | 387-393 | NNP | denotes | Griess |
T11999 | 394-401 | NN | denotes | reagent |
T12000 | 401-402 | . | denotes | . |
R9884 | T11925 | T11934 | prep | In,cultured |
R9885 | T11926 | T11928 | amod | vitro,secretion |
R9886 | T11927 | T11928 | compound | cytokine,secretion |
R9887 | T11928 | T11925 | pobj | secretion,In |
R9888 | T11929 | T11928 | prep | by,secretion |
R9889 | T11930 | T11929 | pobj | BMDC,by |
R9890 | T11931 | T11932 | det | The,BMDC |
R9891 | T11932 | T11934 | nsubjpass | BMDC,cultured |
R9892 | T11933 | T11934 | auxpass | were,cultured |
R9893 | T11934 | T11934 | ROOT | cultured,cultured |
R9894 | T11935 | T11934 | prep | in,cultured |
R9895 | T11936 | T11937 | amod | triplicate,wells |
R9896 | T11937 | T11935 | pobj | wells,in |
R9897 | T11938 | T11937 | prep | of,wells |
R9898 | T11939 | T11942 | amod | 24-well,plates |
R9899 | T11940 | T11939 | cc | or,24-well |
R9900 | T11941 | T11939 | conj | 96-well,24-well |
R9901 | T11942 | T11938 | pobj | plates,of |
R9902 | T11943 | T11934 | prep | at,cultured |
R9903 | T11944 | T11947 | nummod | 106,cells/mL |
R9904 | T11945 | T11944 | cc | or,106 |
R9905 | T11946 | T11944 | conj | 105,106 |
R9906 | T11947 | T11943 | pobj | cells/mL,at |
R9907 | T11948 | T11947 | punct | ",",cells/mL |
R9908 | T11949 | T11947 | npadvmod | respectively,cells/mL |
R9909 | T11950 | T11947 | punct | ",",cells/mL |
R9910 | T11951 | T11947 | prep | in,cells/mL |
R9911 | T11952 | T11954 | amod | RPMI-1640,medium |
R9912 | T11953 | T11954 | amod | complete,medium |
R9913 | T11954 | T11951 | pobj | medium,in |
R9914 | T11955 | T11934 | punct | .,cultured |
R9915 | T11956 | T11957 | det | The,cells |
R9916 | T11957 | T11959 | nsubjpass | cells,washed |
R9917 | T11958 | T11959 | auxpass | were,washed |
R9918 | T11959 | T11959 | ROOT | washed,washed |
R9919 | T11960 | T11959 | cc | and,washed |
R9920 | T11961 | T11959 | conj | stimulated,washed |
R9921 | T11962 | T11961 | prep | with,stimulated |
R9922 | T11963 | T11965 | nummod | 100,LPS |
R9923 | T11964 | T11965 | compound | ng/mL,LPS |
R9924 | T11965 | T11962 | pobj | LPS,with |
R9925 | T11966 | T11965 | cc | or,LPS |
R9926 | T11967 | T11969 | quantmod | 25,/ |
R9927 | T11968 | T11969 | quantmod | µg,/ |
R9928 | T11969 | T11972 | npadvmod | /,I |
R9929 | T11970 | T11971 | compound | mL,poly |
R9930 | T11971 | T11972 | dep | poly,I |
R9931 | T11972 | T11965 | conj | I,LPS |
R9932 | T11973 | T11972 | punct | :,I |
R9933 | T11974 | T11972 | appos | C,I |
R9934 | T11975 | T11959 | punct | .,washed |
R9935 | T11976 | T11982 | prep | After,harvested |
R9936 | T11977 | T11978 | nummod | 24,hours |
R9937 | T11978 | T11976 | pobj | hours,After |
R9938 | T11979 | T11982 | punct | ",",harvested |
R9939 | T11980 | T11982 | nsubjpass | supernatants,harvested |
R9940 | T11981 | T11982 | auxpass | were,harvested |
R9941 | T11982 | T11982 | ROOT | harvested,harvested |
R9942 | T11983 | T11982 | prep | for,harvested |
R9943 | T11984 | T11985 | compound | ELISA,analysis |
R9944 | T11985 | T11983 | pobj | analysis,for |
R9945 | T11986 | T11982 | punct | .,harvested |
R9946 | T11987 | T11988 | det | The,presence |
R9947 | T11988 | T11995 | nsubjpass | presence,determined |
R9948 | T11989 | T11988 | prep | of,presence |
R9949 | T11990 | T11989 | pobj | nitrite,of |
R9950 | T11991 | T11988 | prep | in,presence |
R9951 | T11992 | T11993 | det | the,supernatants |
R9952 | T11993 | T11991 | pobj | supernatants,in |
R9953 | T11994 | T11995 | auxpass | was,determined |
R9954 | T11995 | T11995 | ROOT | determined,determined |
R9955 | T11996 | T11995 | advcl | using,determined |
R9956 | T11997 | T11999 | det | the,reagent |
R9957 | T11998 | T11999 | compound | Griess,reagent |
R9958 | T11999 | T11996 | dobj | reagent,using |
R9959 | T12000 | T11995 | punct | .,determined |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12075 | 9-27 | http://purl.obolibrary.org/obo/GO_0050663 | denotes | cytokine secretion |
T12076 | 18-27 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretion |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12077 | 122-127 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T12078 | 180-185 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11921 | 0-35 | Sentence | denotes | In vitro cytokine secretion by BMDC |
T11922 | 36-175 | Sentence | denotes | The BMDC were cultured in triplicate wells of 24-well or 96-well plates at 106 or 105 cells/mL, respectively, in RPMI-1640 complete medium. |
T11923 | 176-317 | Sentence | denotes | The cells were washed and stimulated with 100 ng/mL LPS or 25 µg/mL poly I:C. After 24 hours, supernatants were harvested for ELISA analysis. |
T11924 | 318-402 | Sentence | denotes | The presence of nitrite in the supernatants was determined using the Griess reagent. |
T220 | 0-35 | Sentence | denotes | In vitro cytokine secretion by BMDC |
T221 | 36-175 | Sentence | denotes | The BMDC were cultured in triplicate wells of 24-well or 96-well plates at 106 or 105 cells/mL, respectively, in RPMI-1640 complete medium. |
T222 | 176-253 | Sentence | denotes | The cells were washed and stimulated with 100 ng/mL LPS or 25 µg/mL poly I:C. |
T223 | 254-317 | Sentence | denotes | After 24 hours, supernatants were harvested for ELISA analysis. |
T224 | 318-402 | Sentence | denotes | The presence of nitrite in the supernatants was determined using the Griess reagent. |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12079 | 149-174 | Protein | denotes | RPMI-1640 complete medium |