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PMC:3279418 / 30971-31304 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11742 0-7 JJ denotes Reverse
T11743 8-21 NN denotes transcription
T11744 22-25 VB denotes was
T11745 26-30 VB denotes done
T11746 31-33 IN denotes in
T11747 34-35 DT denotes a
T11748 36-43 NN denotes PTC-200
T11749 44-51 NNP denotes Peltier
T11750 52-59 NNP denotes Thermal
T11751 60-66 NNP denotes Cycler
T11752 67-68 -LRB- denotes (
T11753 68-70 NNP denotes MJ
T11754 71-79 NNP denotes Research
T11755 79-80 -COMMA- denotes ,
T11756 81-90 NNP denotes Watertown
T11757 90-91 -COMMA- denotes ,
T11758 92-94 JJ denotes MA
T11759 94-95 -RRB- denotes )
T11760 95-102 NN denotes . qRT-P
T11761 102-105 VB denotes CR
T11762 105-114 VB denotes was perfo
T11763 114-116 IN denotes rm
T11764 116-119 NNP denotes ed
T11765 119-124 NNP denotes in AB
T11766 124-128 CD denotes I Pr
T11767 128-136 NNP denotes ism 7700
T11768 137-146 NNP denotes Sequence
T11769 146-152 NNP denotes Detect
T11770 152-156 IN denotes ion
T11771 156-163 NNP denotes System
T11772 163-167 NNP denotes with
T11773 168-178 NN denotes TaqMan® Ge
T11774 178-184 NN denotes ne Exp
T11775 184-185 -LRB- denotes r
T11776 185-192 NNP denotes ession
T11777 192-202 NNP denotes Assays (Ap
T11778 202-203 -COMMA- denotes p
T11779 203-209 NNP denotes lied B
T11780 209-213 NNP denotes iosy
T11781 213-214 -COMMA- denotes s
T11782 214-216 NNP denotes te
T11783 216-217 -RRB- denotes m
T11784 217-220 IN denotes s,
T11785 220-225 NN denotes Foste
T11786 225-229 NN denotes r Ci
T11787 229-230 -COMMA- denotes t
T11788 230-233 NN denotes y,
T11789 233-234 -COMMA- denotes C
T11790 234-241 NN denotes A) for
T11791 241-242 -COMMA- denotes m
T11792 242-246 NNP denotes ouse
T11793 247-248 -COMMA- denotes A
T11794 248-253 NNP denotes ctb,
T11795 253-254 -COMMA- denotes I
T11796 254-257 CC denotes L6,
T11797 258-265 NNP denotes IL12p40
T11798 265-274 VB denotes , Ifnβ, G
T11799 274-276 TO denotes mc
T11800 276-279 DT denotes sf,
T11801 280-292 NN denotes and Sharpin
T11802 292-294 POS denotes ac
T11803 294-302 NN denotes cording
R9783 T11743 T11742 arg1Of transcription,Reverse
R9784 T11743 T11744 arg1Of transcription,was
R9785 T11743 T11745 arg2Of transcription,done
R9786 T11745 T11744 arg2Of done,was
R9787 T11745 T11746 arg1Of done,in
R9788 T11751 T11746 arg2Of Cycler,in
R9789 T11751 T11747 arg1Of Cycler,a
R9790 T11751 T11748 arg1Of Cycler,PTC-200
R9791 T11751 T11749 arg1Of Cycler,Peltier
R9792 T11751 T11750 arg1Of Cycler,Thermal
R9793 T11751 T11752 arg1Of Cycler,(
R9794 T11754 T11753 arg1Of Research,MJ
R9795 T11754 T11755 arg1Of Research,","
R9796 T11755 T11752 arg2Of ",",(
R9797 T11755 T11757 arg1Of ",",","
R9798 T11755 T11758 arg1Of ",",MA
R9799 T11756 T11755 arg2Of Watertown,","
R9800 T11759 T11752 arg3Of ),(
R9801 T11760 T11761 arg1Of . qRT-P,CR
R9802 T11760 T11762 arg2Of . qRT-P,was perfo
R9803 T11762 T11744 modOf was perfo,was
R9804 T11762 T11761 arg2Of was perfo,CR
R9805 T11762 T11763 arg1Of was perfo,rm
R9806 T11762 T11798 arg1Of was perfo,", Ifnβ, G"
R9807 T11769 T11763 arg2Of Detect,rm
R9808 T11769 T11764 arg1Of Detect,ed
R9809 T11769 T11765 arg1Of Detect,in AB
R9810 T11769 T11766 arg1Of Detect,I Pr
R9811 T11769 T11767 arg1Of Detect,ism 7700
R9812 T11769 T11768 arg1Of Detect,Sequence
R9813 T11769 T11770 arg1Of Detect,ion
R9814 T11769 T11784 arg1Of Detect,"s, "
R9815 T11772 T11771 arg1Of with,System
R9816 T11774 T11770 arg2Of ne Exp,ion
R9817 T11774 T11772 arg1Of ne Exp,with
R9818 T11774 T11773 arg1Of ne Exp,TaqMan® Ge
R9819 T11774 T11775 arg1Of ne Exp,r
R9820 T11777 T11775 arg2Of Assays (Ap,r
R9821 T11777 T11776 arg1Of Assays (Ap,ession
R9822 T11777 T11778 arg1Of Assays (Ap,p
R9823 T11780 T11778 arg2Of iosy,p
R9824 T11780 T11779 arg1Of iosy,lied B
R9825 T11780 T11781 arg1Of iosy,s
R9826 T11782 T11781 arg2Of te,s
R9827 T11783 T11775 arg3Of m,r
R9828 T11786 T11785 arg1Of r Ci,Foste
R9829 T11786 T11787 arg1Of r Ci,t
R9830 T11787 T11789 arg1Of t,C
R9831 T11788 T11787 arg2Of "y, ",t
R9832 T11789 T11791 arg1Of C,m
R9833 T11790 T11789 arg2Of A) for ,C
R9834 T11791 T11793 arg1Of m,A
R9835 T11792 T11791 arg2Of ouse,m
R9836 T11793 T11796 arg1Of A,"L6,"
R9837 T11794 T11793 arg2Of "ctb, ",A
R9838 T11796 T11784 arg2Of "L6,","s, "
R9839 T11796 T11795 arg1Of "L6,",I
R9840 T11797 T11796 arg2Of IL12p40,"L6,"
R9841 T11799 T11798 arg2Of mc,", Ifnβ, G"
R9842 T11801 T11800 arg1Of and Sharpin ,"sf,"
R9843 T11801 T11802 arg2Of and Sharpin ,ac
R9844 T11803 T11799 arg2Of cording ,mc
R9845 T11803 T11802 arg1Of cording ,ac

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11510 0-7 VB denotes Reverse
T11511 8-21 NN denotes transcription
T11512 22-25 VBD denotes was
T11513 26-30 VBN denotes done
T11514 31-33 IN denotes in
T11515 34-35 DT denotes a
T11516 36-43 NN denotes PTC-200
T11517 44-51 NNP denotes Peltier
T11518 52-59 JJ denotes Thermal
T11519 60-66 NNP denotes Cycler
T11520 67-68 -LRB- denotes (
T11521 68-70 NNP denotes MJ
T11522 71-79 NNP denotes Research
T11523 79-80 , denotes ,
T11524 81-90 NNP denotes Watertown
T11525 90-91 , denotes ,
T11526 92-94 NNP denotes MA
T11527 94-95 -RRB- denotes )
T11528 95-96 . denotes .
T11529 97-104 NN denotes qRT-PCR
T11530 105-108 VBD denotes was
T11531 109-118 VBN denotes performed
T11532 119-121 IN denotes in
T11533 122-125 NNP denotes ABI
T11534 126-131 NNP denotes Prism
T11535 132-136 CD denotes 7700
T11536 137-145 NNP denotes Sequence
T11537 146-155 NNP denotes Detection
T11538 156-162 NNP denotes System
T11539 163-167 IN denotes with
T11540 168-174 NNP denotes TaqMan
T11541 174-175 NNP denotes ®
T11542 176-180 NNP denotes Gene
T11543 181-191 NNP denotes Expression
T11544 192-198 NNP denotes Assays
T11545 199-200 -LRB- denotes (
T11546 200-207 NNP denotes Applied
T11547 208-218 NNPS denotes Biosystems
T11548 218-219 , denotes ,
T11549 220-226 NNP denotes Foster
T11550 227-231 NNP denotes City
T11551 231-232 , denotes ,
T11552 233-235 NNP denotes CA
T11553 235-236 -RRB- denotes )
T11554 237-240 IN denotes for
T11555 241-246 NN denotes mouse
T11556 247-251 NNP denotes Actb
T11557 251-252 , denotes ,
T11558 253-256 NNP denotes IL6
T11559 256-257 , denotes ,
T11560 258-265 NNP denotes IL12p40
T11561 265-266 , denotes ,
T11562 267-271 NNP denotes Ifnβ
T11563 271-272 , denotes ,
T11564 273-278 NNP denotes Gmcsf
T11565 278-279 , denotes ,
T11566 280-283 CC denotes and
T11567 284-291 NNP denotes Sharpin
T11568 292-301 VBG denotes according
T11569 302-304 TO denotes to
T11570 305-308 DT denotes the
T11571 309-321 NN denotes manufacturer
T11572 321-323 POS denotes 's
T11573 324-332 NN denotes protocol
T11574 332-333 . denotes .
R9548 T11510 T11511 amod Reverse,transcription
R9549 T11511 T11513 nsubjpass transcription,done
R9550 T11512 T11513 auxpass was,done
R9551 T11513 T11513 ROOT done,done
R9552 T11514 T11513 prep in,done
R9553 T11515 T11519 det a,Cycler
R9554 T11516 T11519 compound PTC-200,Cycler
R9555 T11517 T11519 compound Peltier,Cycler
R9556 T11518 T11519 compound Thermal,Cycler
R9557 T11519 T11514 pobj Cycler,in
R9558 T11520 T11522 punct (,Research
R9559 T11521 T11522 compound MJ,Research
R9560 T11522 T11519 appos Research,Cycler
R9561 T11523 T11522 punct ",",Research
R9562 T11524 T11522 npadvmod Watertown,Research
R9563 T11525 T11524 punct ",",Watertown
R9564 T11526 T11522 appos MA,Research
R9565 T11527 T11522 punct ),Research
R9566 T11528 T11513 punct .,done
R9567 T11529 T11531 nsubjpass qRT-PCR,performed
R9568 T11530 T11531 auxpass was,performed
R9569 T11531 T11531 ROOT performed,performed
R9570 T11532 T11531 prep in,performed
R9571 T11533 T11534 compound ABI,Prism
R9572 T11534 T11538 compound Prism,System
R9573 T11535 T11538 nummod 7700,System
R9574 T11536 T11538 compound Sequence,System
R9575 T11537 T11538 compound Detection,System
R9576 T11538 T11532 pobj System,in
R9577 T11539 T11538 prep with,System
R9578 T11540 T11541 compound TaqMan,®
R9579 T11541 T11539 pobj ®,with
R9580 T11542 T11544 compound Gene,Assays
R9581 T11543 T11544 compound Expression,Assays
R9582 T11544 T11538 conj Assays,System
R9583 T11545 T11547 punct (,Biosystems
R9584 T11546 T11547 compound Applied,Biosystems
R9585 T11547 T11544 parataxis Biosystems,Assays
R9586 T11548 T11547 punct ",",Biosystems
R9587 T11549 T11550 compound Foster,City
R9588 T11550 T11547 conj City,Biosystems
R9589 T11551 T11550 punct ",",City
R9590 T11552 T11550 npadvmod CA,City
R9591 T11553 T11531 punct ),performed
R9592 T11554 T11531 prep for,performed
R9593 T11555 T11556 compound mouse,Actb
R9594 T11556 T11554 pobj Actb,for
R9595 T11557 T11556 punct ",",Actb
R9596 T11558 T11556 conj IL6,Actb
R9597 T11559 T11558 punct ",",IL6
R9598 T11560 T11558 conj IL12p40,IL6
R9599 T11561 T11560 punct ",",IL12p40
R9600 T11562 T11560 conj Ifnβ,IL12p40
R9601 T11563 T11562 punct ",",Ifnβ
R9602 T11564 T11562 conj Gmcsf,Ifnβ
R9603 T11565 T11564 punct ",",Gmcsf
R9605 T11567 T11564 conj Sharpin,Gmcsf
R9606 T11568 T11531 prep according,performed
R9607 T11569 T11568 prep to,according
R9608 T11570 T11571 det the,manufacturer
R9609 T11571 T11573 poss manufacturer,protocol
R9610 T11572 T11571 case 's,manufacturer
R9611 T11573 T11569 pobj protocol,to
R9612 T11574 T11531 punct .,performed
R9604 T11566 T11564 cc and,Gmcsf

GO-BP

Id Subject Object Predicate Lexical cue
T11844 0-21 http://purl.obolibrary.org/obo/GO_0001171 denotes Reverse transcription
T11846 8-21 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T11850 176-191 http://purl.obolibrary.org/obo/GO_0010467 denotes Gene Expression
T11852 233-235 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

GO-MF

Id Subject Object Predicate Lexical cue
T11856 233-235 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

sentences

Id Subject Object Predicate Lexical cue
T11355 0-333 Sentence denotes Reverse transcription was done in a PTC-200 Peltier Thermal Cycler (MJ Research, Watertown, MA). qRT-PCR was performed in ABI Prism 7700 Sequence Detection System with TaqMan® Gene Expression Assays (Applied Biosystems, Foster City, CA) for mouse Actb, IL6, IL12p40, Ifnβ, Gmcsf, and Sharpin according to the manufacturer's protocol.
T217 0-333 Sentence denotes Reverse transcription was done in a PTC-200 Peltier Thermal Cycler (MJ Research, Watertown, MA). qRT-PCR was performed in ABI Prism 7700 Sequence Detection System with TaqMan® Gene Expression Assays (Applied Biosystems, Foster City, CA) for mouse Actb, IL6, IL12p40, Ifnβ, Gmcsf, and Sharpin according to the manufacturer's protocol.

events-check-again

Id Subject Object Predicate Lexical cue
T11899 247-251 Protein denotes Actb
T11900 253-256 Protein denotes IL6
T11901 258-265 Protein denotes IL12p40
T11902 267-271 Protein denotes Ifnβ
T11903 273-278 Protein denotes Gmcsf
T11904 284-291 Protein denotes Sharpin

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11915 247-251 Protein denotes Actb
T11916 253-256 Protein denotes IL6
T11917 258-265 Protein denotes IL12p40
T11918 267-271 Protein denotes Ifnβ
T11919 284-291 Protein denotes Sharpin

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T11344 247-251 Protein denotes Actb
T11345 253-256 Protein denotes IL6
T11346 258-265 Protein denotes IL12p40
T11347 267-271 Protein denotes Ifnβ
T11348 273-278 Protein denotes Gmcsf
T11349 284-291 Protein denotes Sharpin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11830 247-251 P60709 denotes Actb
T11831 253-256 P05231 denotes IL6
T11832 273-278 P04141 denotes Gmcsf
T11833 284-291 Q9H0F6 denotes Sharpin

test2

Id Subject Object Predicate Lexical cue
T11328 247-251 Protein denotes Actb
T11329 253-256 Protein denotes IL6
T11330 258-265 Protein denotes IL12p40
T11331 267-271 Protein denotes Ifnβ
T11332 273-278 Protein denotes Gmcsf
T11333 284-291 Protein denotes Sharpin