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PMC:3279418 / 22161-22429 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8405 0-5 NN denotes NF-κB
T8406 6-16 NN denotes activation
T8407 17-20 VB denotes was
T8408 21-32 RB denotes selectively
T8409 33-42 VB denotes inhibited
T8410 43-45 IN denotes in
T8411 46-49 NN denotes LPS
T8412 50-53 CC denotes and
T8413 54-58 NN denotes poly
T8414 59-60 NN denotes I
T8415 60-61 SYM denotes :
T8416 61-62 NN denotes C
T8417 63-73 VB denotes stimulated
T8418 74-78 NN denotes cpdm
T8419 79-83 NN denotes BMDC
T8420 84-92 VB denotes compared
T8421 93-95 TO denotes to
T8422 96-100 JJ denotes wild
T8423 101-105 NN denotes type
T8424 105-106 -COMMA- denotes ,
T8425 107-112 IN denotes while
T8426 113-123 NN denotes activation
T8427 124-126 IN denotes of
T8428 127-136 NN denotes TBK1/IRF3
T8429 136-137 -COMMA- denotes ,
T8430 138-144 NN denotes ERK1/2
T8431 144-145 -COMMA- denotes ,
T8432 146-148 CC denotes or
T8433 149-152 NN denotes p38
T8434 153-156 VB denotes was
T8435 157-160 RB denotes not
T8436 160-161 -COMMA- denotes ,
T8437 162-172 VB denotes indicating
T8438 173-177 IN denotes that
T8439 178-187 VB denotes disrupted
T8440 188-193 NN denotes NF-κB
T8441 194-203 NN denotes signaling
T8442 204-206 IN denotes in
T8443 207-211 NN denotes cpdm
T8444 212-214 NN denotes DC
T8445 215-217 VB denotes is
T8446 218-229 JJ denotes responsible
T8447 230-233 IN denotes for
T8448 234-237 DT denotes the
T8449 238-247 JJ denotes defective
T8450 248-256 NN denotes cytokine
T8451 257-267 NN denotes expression
R6970 T8416 T8405 arg1Of C,NF-κB
R6971 T8416 T8417 arg1Of C,stimulated
R6973 T8417 T8420 arg1Of stimulated,compared
R6975 T8417 T8424 arg1Of stimulated,","
R6976 T8417 T8425 arg1Of stimulated,while
R6978 T8419 T8417 arg2Of BMDC,stimulated
R6979 T8419 T8418 arg1Of BMDC,cpdm
R6981 T8421 T8420 arg2Of to,compared
R6984 T8423 T8421 arg2Of type,to
R6985 T8423 T8422 arg1Of type,wild
R6987 T8426 T8427 arg1Of activation,of
R6988 T8426 T8434 arg1Of activation,was
R6989 T8426 T8437 arg1Of activation,indicating
R6991 T8428 T8429 arg1Of TBK1/IRF3,","
R6992 T8429 T8432 arg1Of ",",or
R6993 T8430 T8429 arg2Of ERK1/2,","
R6995 T8432 T8427 arg2Of or,of
R6996 T8432 T8431 arg1Of or,","
R6997 T8433 T8432 arg2Of p38,or
R6998 T8437 T8425 arg2Of indicating,while
R6999 T8437 T8434 arg2Of indicating,was
R7000 T8437 T8435 arg1Of indicating,not
R7001 T8437 T8436 arg1Of indicating,","
R7003 T8441 T8439 arg2Of signaling,disrupted
R7004 T8441 T8440 arg1Of signaling,NF-κB
R7005 T8441 T8442 arg1Of signaling,in
R7006 T8441 T8445 arg1Of signaling,is
R7007 T8441 T8446 arg1Of signaling,responsible
R7009 T8444 T8442 arg2Of DC,in
R7010 T8444 T8443 arg1Of DC,cpdm
R7011 T8445 T8437 arg2Of is,indicating
R7012 T8445 T8438 arg1Of is,that
R7014 T8446 T8445 arg2Of responsible,is
R7015 T8446 T8447 arg1Of responsible,for
R7020 T8451 T8447 arg2Of expression,for
R7021 T8451 T8448 arg1Of expression,the
R7022 T8451 T8449 arg1Of expression,defective
R7023 T8451 T8450 arg1Of expression,cytokine
R7193 T8405 T8407 modOf NF-κB,was
R7203 T8405 T8415 arg1Of NF-κB,:
R7208 T8406 T8407 arg1Of activation,was
R7211 T8406 T8409 arg2Of activation,inhibited
R7212 T8409 T8407 arg2Of inhibited,was
R7216 T8409 T8408 arg1Of inhibited,selectively
R7217 T8409 T8410 arg1Of inhibited,in
R7222 T8411 T8412 arg1Of LPS,and
R7229 T8412 T8410 arg2Of and,in
R7232 T8414 T8412 arg2Of I,and
R7237 T8414 T8413 arg1Of I,poly

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7284 0-5 JJ denotes NF-κB
T7285 6-16 NN denotes activation
T7286 17-20 VBD denotes was
T7287 21-32 RB denotes selectively
T7288 33-42 VBN denotes inhibited
T7289 43-45 IN denotes in
T7290 46-49 NNP denotes LPS
T7291 50-53 CC denotes and
T7292 54-58 RB denotes poly
T7293 59-60 PRP denotes I
T7294 60-61 : denotes :
T7295 61-62 NNP denotes C
T7296 63-73 VBD denotes stimulated
T7297 74-78 NN denotes cpdm
T7298 79-83 NNP denotes BMDC
T7299 84-92 VBN denotes compared
T7300 93-95 TO denotes to
T7301 96-100 JJ denotes wild
T7302 101-105 NN denotes type
T7303 105-106 , denotes ,
T7304 107-112 IN denotes while
T7305 113-123 NN denotes activation
T7306 124-126 IN denotes of
T7307 127-136 CD denotes TBK1/IRF3
T7308 136-137 , denotes ,
T7309 138-144 NNP denotes ERK1/2
T7310 144-145 , denotes ,
T7311 146-148 CC denotes or
T7312 149-152 CD denotes p38
T7313 153-156 VBD denotes was
T7314 157-160 RB denotes not
T7315 160-161 , denotes ,
T7316 162-172 VBG denotes indicating
T7317 173-177 IN denotes that
T7318 178-187 VBN denotes disrupted
T7319 188-193 NNP denotes NF-κB
T7320 194-203 VBG denotes signaling
T7321 204-206 IN denotes in
T7322 207-211 NN denotes cpdm
T7323 212-214 NNP denotes DC
T7324 215-217 VBZ denotes is
T7325 218-229 JJ denotes responsible
T7326 230-233 IN denotes for
T7327 234-237 DT denotes the
T7328 238-247 JJ denotes defective
T7329 248-256 NN denotes cytokine
T7330 257-267 NN denotes expression
T7331 267-268 . denotes .
R5890 T7284 T7285 amod NF-κB,activation
R5891 T7285 T7288 nsubjpass activation,inhibited
R5892 T7286 T7288 auxpass was,inhibited
R5893 T7287 T7288 advmod selectively,inhibited
R5894 T7288 T7288 ROOT inhibited,inhibited
R5895 T7289 T7288 prep in,inhibited
R5896 T7290 T7289 pobj LPS,in
R5897 T7291 T7288 cc and,inhibited
R5898 T7292 T7296 advmod poly,stimulated
R5899 T7293 T7296 dep I,stimulated
R5900 T7294 T7296 punct :,stimulated
R5901 T7295 T7296 npadvmod C,stimulated
R5902 T7296 T7288 conj stimulated,inhibited
R5903 T7297 T7298 compound cpdm,BMDC
R5904 T7298 T7296 dobj BMDC,stimulated
R5905 T7299 T7296 prep compared,stimulated
R5906 T7300 T7299 prep to,compared
R5907 T7301 T7302 amod wild,type
R5908 T7302 T7300 pobj type,to
R5909 T7303 T7296 punct ",",stimulated
R5910 T7304 T7313 mark while,was
R5911 T7305 T7313 nsubj activation,was
R5912 T7306 T7305 prep of,activation
R5913 T7307 T7306 pobj TBK1/IRF3,of
R5914 T7308 T7305 punct ",",activation
R5915 T7309 T7305 conj ERK1/2,activation
R5916 T7310 T7309 punct ",",ERK1/2
R5917 T7311 T7309 cc or,ERK1/2
R5918 T7312 T7309 conj p38,ERK1/2
R5919 T7313 T7296 advcl was,stimulated
R5920 T7314 T7313 neg not,was
R5921 T7315 T7296 punct ",",stimulated
R5922 T7316 T7296 advcl indicating,stimulated
R5923 T7317 T7318 mark that,disrupted
R5924 T7318 T7316 ccomp disrupted,indicating
R5925 T7319 T7320 nsubj NF-κB,signaling
R5926 T7320 T7318 ccomp signaling,disrupted
R5927 T7321 T7320 prep in,signaling
R5928 T7322 T7323 compound cpdm,DC
R5929 T7323 T7321 pobj DC,in
R5930 T7324 T7320 ccomp is,signaling
R5931 T7325 T7324 acomp responsible,is
R5932 T7326 T7325 prep for,responsible
R5933 T7327 T7330 det the,expression
R5934 T7328 T7330 amod defective,expression
R5935 T7329 T7330 compound cytokine,expression
R5936 T7330 T7326 pobj expression,for
R5937 T7331 T7296 punct .,stimulated

GO-BP

Id Subject Object Predicate Lexical cue
T9130 194-203 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T9160 138-142 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T9161 149-152 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T9163 0-16 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T9172 127-131 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1

GO-MF

Id Subject Object Predicate Lexical cue
T9191 138-142 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T9192 149-152 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T9193 127-131 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1

sentences

Id Subject Object Predicate Lexical cue
T6782 0-268 Sentence denotes NF-κB activation was selectively inhibited in LPS and poly I:C stimulated cpdm BMDC compared to wild type, while activation of TBK1/IRF3, ERK1/2, or p38 was not, indicating that disrupted NF-κB signaling in cpdm DC is responsible for the defective cytokine expression.
T147 0-268 Sentence denotes NF-κB activation was selectively inhibited in LPS and poly I:C stimulated cpdm BMDC compared to wild type, while activation of TBK1/IRF3, ERK1/2, or p38 was not, indicating that disrupted NF-κB signaling in cpdm DC is responsible for the defective cytokine expression.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T9391 113-123 Positive_regulation denotes activation
T9392 113-123 Positive_regulation denotes activation
T9393 113-123 Positive_regulation denotes activation
T9394 113-123 Positive_regulation denotes activation
T9395 127-131 Protein denotes TBK1
T9396 132-136 Protein denotes IRF3
T9397 138-142 Protein denotes ERK1
T9398 143-144 Protein denotes 2
T9399 153-160 Negative_regulation denotes was not true
T9400 153-160 Negative_regulation denotes was not true
T9401 153-160 Negative_regulation denotes was not true
T9402 153-160 Negative_regulation denotes was not true
R7747 T9391 T9400 themeOf activation,was not
R7748 T9392 T9402 themeOf activation,was not
R7749 T9393 T9399 themeOf activation,was not
R7750 T9394 T9401 themeOf activation,was not
R7751 T9395 T9394 themeOf TBK1,activation
R7753 T9396 T9393 themeOf IRF3,activation
R7754 T9397 T9391 themeOf ERK1,activation
R7755 T9398 T9392 themeOf 2,activation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T9481 0-5 Protein denotes NF-κB
T9482 127-131 Protein denotes TBK1
T9483 132-136 Protein denotes IRF3
T9484 138-142 Protein denotes ERK1
T9485 149-152 Protein denotes p38
T9486 188-193 Protein denotes NF-κB
T9487 6-16 Positive_regulation denotes activation
T9488 33-42 Negative_regulation denotes inhibited
T9489 113-123 Positive_regulation denotes activation
T9490 113-123 Positive_regulation denotes activation
T9491 113-123 Positive_regulation denotes activation
T9492 113-123 Positive_regulation denotes activation
R7814 T9481 T9487 themeOf NF-κB,activation
R7815 T9482 T9489 themeOf TBK1,activation
R7816 T9483 T9490 themeOf IRF3,activation
R7817 T9484 T9491 themeOf ERK1,activation
R7818 T9485 T9492 themeOf p38,activation
R7819 T9487 T9488 themeOf activation,inhibited

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T6703 113-123 Positive_regulation denotes activation
T6704 113-123 Positive_regulation denotes activation
T6705 113-123 Positive_regulation denotes activation
T6706 113-123 Positive_regulation denotes activation
T6707 127-131 Protein denotes TBK1
T6708 132-136 Protein denotes IRF3
T6709 138-142 Protein denotes ERK1
T6710 143-144 Protein denotes 2
T6711 153-160 Negative_regulation denotes was not true
T6712 153-160 Negative_regulation denotes was not true
T6713 153-160 Negative_regulation denotes was not true
T6714 153-160 Negative_regulation denotes was not true
R5379 T6703 T6712 themeOf activation,was not
R5380 T6704 T6714 themeOf activation,was not
R5381 T6705 T6711 themeOf activation,was not
R5382 T6706 T6713 themeOf activation,was not
R5383 T6707 T6706 themeOf TBK1,activation
R5384 T6708 T6705 themeOf IRF3,activation
R5385 T6709 T6703 themeOf ERK1,activation
R5386 T6710 T6704 themeOf 2,activation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9050 127-131 Q9UHD2 denotes TBK1
T9051 132-136 Q14653 denotes IRF3
T9052 138-142 P27361 denotes ERK1
T9053 149-152 Q16539 denotes p38
T9054 149-152 P53778 denotes p38
T9055 149-152 O15264 denotes p38
T9056 149-152 Q15759 denotes p38