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PMC:3279418 / 18448-19344 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15341 44-54 VB denotes Stimulated
T15342 55-59 NN denotes cpdm
T15343 60-64 NN denotes BMDC
T15344 65-72 VB denotes induced
T15345 73-83 JJ denotes Th2-biased
T15346 84-92 NN denotes cytokine
T15347 93-103 NN denotes production
T15348 104-108 IN denotes from
T15349 109-114 NN denotes naïve
T15350 115-119 JJ denotes CD4+
T15351 120-121 NN denotes T
T15352 122-127 NN denotes cells
T15353 129-131 NN denotes WT
T15354 132-135 CC denotes and
T15355 136-140 NN denotes cpdm
T15356 141-145 NN denotes BMDC
T15357 146-147 -LRB- denotes (
T15358 147-152 CD denotes 5×104
T15359 153-158 NN denotes cells
T15360 159-161 IN denotes in
T15361 162-165 CD denotes 0.1
T15362 166-168 NN denotes mL
T15363 169-177 JJ denotes complete
T15364 178-184 NN denotes medium
T15365 184-185 -COLON- denotes ;
T15366 186-189 NN denotes MHC
T15367 190-199 NN denotes haplotype
T15368 199-200 -COLON- denotes :
T15369 201-205 NN denotes H-2b
T15370 205-206 -RRB- denotes )
T15371 207-211 VB denotes were
T15372 212-221 VB denotes incubated
T15373 222-226 IN denotes with
T15374 227-233 NN denotes medium
T15375 233-234 -COMMA- denotes ,
T15376 235-238 CD denotes 100
T15377 239-244 NN denotes ng/mL
T15378 245-248 NN denotes LPS
T15379 248-249 -COMMA- denotes ,
T15380 250-252 CD denotes 25
T15381 253-258 NN denotes µg/mL
T15382 259-263 NN denotes poly
T15383 264-265 NN denotes I
T15384 265-266 -COLON- denotes :
T15385 266-267 NN denotes C
T15386 268-270 CC denotes or
T15387 271-272 CD denotes 5
T15388 273-278 NN denotes µg/mL
T15389 279-286 NN denotes Pam3CYS
T15390 288-293 IN denotes After
T15391 294-296 CD denotes 24
T15392 297-302 NN denotes hours
T15393 302-303 -COMMA- denotes ,
T15394 304-309 NN denotes cells
T15395 310-314 VB denotes were
T15396 315-321 VB denotes washed
T15397 322-326 IN denotes with
T15398 327-330 NNP denotes PBS
T15399 331-334 CC denotes and
T15400 335-344 VB denotes incubated
T15401 345-349 IN denotes with
T15402 350-357 RB denotes freshly
T15403 358-366 VB denotes isolated
T15404 367-377 JJ denotes allogeneic
T15405 378-383 NN denotes naïve
T15406 384-388 JJ denotes CD4+
T15407 389-390 NN denotes T
T15408 391-396 NN denotes cells
T15409 397-398 -LRB- denotes (
T15410 398-405 CD denotes 2.5×105
T15411 406-411 NN denotes cells
T15412 412-414 IN denotes in
T15413 415-418 CD denotes 0.1
T15414 419-421 NN denotes mL
T15415 422-430 JJ denotes complete
T15416 431-437 NN denotes medium
T15417 437-438 -COLON- denotes ;
T15418 439-442 NN denotes MHC
T15419 443-452 NN denotes haplotype
T15420 452-453 -COLON- denotes :
T15421 454-458 NN denotes H-2d
T15422 458-459 -RRB- denotes )
T15423 461-466 IN denotes After
T15424 467-468 CD denotes 5
T15425 469-473 NN denotes days
T15426 473-474 -COMMA- denotes ,
T15427 475-487 NN denotes supernatants
T15428 488-492 VB denotes were
T15429 493-502 VB denotes collected
T15430 503-506 CC denotes and
T15431 507-510 DT denotes the
T15432 511-520 NN denotes secretion
T15433 521-523 IN denotes of
T15434 524-528 NN denotes IFNγ
T15435 528-529 -COMMA- denotes ,
T15436 530-533 NN denotes IL4
T15437 533-534 -COMMA- denotes ,
T15438 535-538 CC denotes and
T15439 539-542 NN denotes IL2
T15440 543-547 VB denotes were
T15441 548-556 VB denotes measured
T15442 557-559 IN denotes by
T15443 560-565 NN denotes ELISA
T15444 567-575 JJ denotes Negative
T15445 576-584 NN denotes controls
T15446 585-588 VB denotes are
T15447 589-590 CD denotes 1
T15448 590-591 -RRB- denotes )
T15449 592-602 VB denotes stimulated
T15450 603-607 NN denotes BMDC
T15451 608-615 IN denotes without
T15452 616-626 NN denotes co-culture
T15453 627-631 IN denotes with
T15454 632-642 JJ denotes allogeneic
T15455 643-647 JJ denotes CD4+
T15456 648-649 NN denotes T
T15457 650-655 NN denotes cells
T15458 655-656 -COLON- denotes ;
T15459 657-658 LS denotes 2
T15460 658-659 -RRB- denotes )
T15461 660-670 JJ denotes allogeneic
T15462 671-675 JJ denotes CD4+
T15463 676-677 NN denotes T
T15464 678-683 NN denotes cells
T15465 684-691 IN denotes without
T15466 692-702 NN denotes co-culture
T15467 703-707 IN denotes with
T15468 708-718 VB denotes stimulated
T15469 719-723 NN denotes BMDC
T15470 725-732 NN denotes Samples
T15471 733-737 IN denotes from
T15472 738-742 CC denotes both
T15473 743-751 JJ denotes negative
T15474 752-760 NN denotes controls
T15475 761-764 VB denotes had
T15476 765-767 DT denotes no
T15477 768-778 JJ denotes detectable
T15478 779-789 NN denotes production
T15479 790-792 IN denotes of
T15480 793-796 DT denotes the
T15481 797-811 JJ denotes aforementioned
T15482 812-821 NN denotes cytokines
T15483 822-823 -LRB- denotes (
T15484 823-826 RB denotes not
T15485 827-832 VB denotes shown
T15486 832-833 -RRB- denotes )
T15487 835-842 NN denotes Results
T15488 843-846 VB denotes are
T15489 847-855 VB denotes analyzed
T15490 856-861 VB denotes based
T15491 862-864 IN denotes on
T15492 865-868 CD denotes 2–4
T15493 869-873 NN denotes mice
T15494 874-877 IN denotes per
T15495 878-884 NN denotes group.
T15496 885-886 SYM denotes *
T15497 887-888 NN denotes P
T15498 888-889 SYM denotes <
T15499 889-893 CD denotes 0.05
R12806 T15343 T15341 arg2Of BMDC,Stimulated
R12807 T15343 T15342 arg1Of BMDC,cpdm
R12808 T15343 T15344 arg1Of BMDC,induced
R12809 T15347 T15344 arg2Of production,induced
R12810 T15347 T15345 arg1Of production,Th2-biased
R12811 T15347 T15346 arg1Of production,cytokine
R12812 T15347 T15348 arg1Of production,from
R12813 T15352 T15348 arg2Of cells,from
R12814 T15352 T15349 arg1Of cells,naïve
R12815 T15352 T15350 arg1Of cells,CD4+
R12816 T15352 T15351 arg1Of cells,T
R12817 T15353 T15354 arg1Of WT,and
R12818 T15355 T15354 arg2Of cpdm,and
R12819 T15356 T15353 arg1Of BMDC,WT
R12820 T15356 T15355 arg1Of BMDC,cpdm
R12821 T15356 T15357 arg1Of BMDC,(
R12822 T15356 T15371 arg1Of BMDC,were
R12823 T15356 T15372 arg2Of BMDC,incubated
R12824 T15359 T15357 arg2Of cells,(
R12825 T15359 T15358 arg1Of cells,5×104
R12826 T15359 T15360 arg1Of cells,in
R12827 T15359 T15368 arg1Of cells,:
R12828 T15364 T15361 arg1Of medium,0.1
R12829 T15364 T15362 arg1Of medium,mL
R12830 T15364 T15363 arg1Of medium,complete
R12831 T15364 T15365 arg1Of medium,;
R12832 T15365 T15360 arg2Of ;,in
R12833 T15367 T15365 arg2Of haplotype,;
R12834 T15367 T15366 arg1Of haplotype,MHC
R12835 T15369 T15368 arg2Of H-2b,:
R12836 T15370 T15357 arg3Of ),(
R12837 T15372 T15371 arg2Of incubated,were
R12838 T15372 T15373 arg1Of incubated,with
R12839 T15374 T15375 arg1Of medium,","
R12840 T15375 T15379 arg1Of ",",","
R12841 T15378 T15375 arg2Of LPS,","
R12842 T15378 T15376 arg1Of LPS,100
R12843 T15378 T15377 arg1Of LPS,ng/mL
R12844 T15379 T15386 arg1Of ",",or
R12845 T15383 T15382 arg1Of I,poly
R12846 T15383 T15384 arg1Of I,:
R12847 T15385 T15379 arg2Of C,","
R12848 T15385 T15380 arg1Of C,25
R12849 T15385 T15381 arg1Of C,µg/mL
R12850 T15385 T15383 arg1Of C,I
R12851 T15386 T15373 arg2Of or,with
R12852 T15389 T15386 arg2Of Pam3CYS,or
R12853 T15389 T15387 arg1Of Pam3CYS,5
R12854 T15389 T15388 arg1Of Pam3CYS,µg/mL
R12855 T15392 T15390 arg2Of hours,After
R12856 T15392 T15391 arg1Of hours,24
R12857 T15394 T15395 arg1Of cells,were
R12858 T15394 T15396 arg2Of cells,washed
R12859 T15394 T15400 arg2Of cells,incubated
R12860 T15396 T15397 arg1Of washed,with
R12861 T15396 T15399 arg1Of washed,and
R12862 T15398 T15397 arg2Of PBS,with
R12863 T15399 T15390 arg1Of and,After
R12864 T15399 T15393 arg1Of and,","
R12865 T15399 T15395 arg2Of and,were
R12866 T15400 T15399 arg2Of incubated,and
R12867 T15400 T15401 arg1Of incubated,with
R12868 T15403 T15402 arg1Of isolated,freshly
R12869 T15408 T15401 arg2Of cells,with
R12870 T15408 T15403 arg1Of cells,isolated
R12871 T15408 T15404 arg1Of cells,allogeneic
R12872 T15408 T15405 arg1Of cells,naïve
R12873 T15408 T15406 arg1Of cells,CD4+
R12874 T15408 T15407 arg1Of cells,T
R12875 T15408 T15409 arg1Of cells,(
R12876 T15411 T15409 arg2Of cells,(
R12877 T15411 T15410 arg1Of cells,2.5×105
R12878 T15411 T15412 arg1Of cells,in
R12879 T15411 T15420 arg1Of cells,:
R12880 T15416 T15413 arg1Of medium,0.1
R12881 T15416 T15414 arg1Of medium,mL
R12882 T15416 T15415 arg1Of medium,complete
R12883 T15416 T15417 arg1Of medium,;
R12884 T15417 T15412 arg2Of ;,in
R12885 T15419 T15417 arg2Of haplotype,;
R12886 T15419 T15418 arg1Of haplotype,MHC
R12887 T15421 T15420 arg2Of H-2d,:
R12888 T15422 T15409 arg3Of ),(
R12889 T15425 T15423 arg2Of days,After
R12890 T15425 T15424 arg1Of days,5
R12891 T15427 T15428 arg1Of supernatants,were
R12892 T15427 T15429 arg2Of supernatants,collected
R12893 T15429 T15428 arg2Of collected,were
R12894 T15429 T15430 arg1Of collected,and
R12895 T15430 T15423 arg1Of and,After
R12896 T15430 T15426 arg1Of and,","
R12897 T15432 T15431 arg1Of secretion,the
R12898 T15432 T15433 arg1Of secretion,of
R12899 T15432 T15440 arg1Of secretion,were
R12900 T15432 T15441 arg2Of secretion,measured
R12901 T15434 T15435 arg1Of IFNγ,","
R12902 T15435 T15438 arg1Of ",",and
R12903 T15436 T15435 arg2Of IL4,","
R12904 T15438 T15433 arg2Of and,of
R12905 T15438 T15437 arg1Of and,","
R12906 T15439 T15438 arg2Of IL2,and
R12907 T15441 T15430 arg2Of measured,and
R12908 T15441 T15440 arg2Of measured,were
R12909 T15443 T15441 arg1Of ELISA,measured
R12910 T15443 T15442 arg2Of ELISA,by
R12911 T15445 T15444 arg1Of controls,Negative
R12912 T15445 T15446 arg1Of controls,are
R12913 T15447 T15449 arg1Of 1,stimulated
R12914 T15449 T15446 arg2Of stimulated,are
R12915 T15449 T15448 arg1Of stimulated,)
R12916 T15449 T15451 arg1Of stimulated,without
R12917 T15450 T15449 arg2Of BMDC,stimulated
R12918 T15452 T15451 arg2Of co-culture,without
R12919 T15452 T15453 arg1Of co-culture,with
R12920 T15457 T15454 arg1Of cells,allogeneic
R12921 T15457 T15455 arg1Of cells,CD4+
R12922 T15457 T15456 arg1Of cells,T
R12923 T15457 T15458 arg1Of cells,;
R12924 T15458 T15453 arg2Of ;,with
R12925 T15459 T15460 arg1Of 2,)
R12926 T15464 T15458 arg2Of cells,;
R12927 T15464 T15459 arg1Of cells,2
R12928 T15464 T15461 arg1Of cells,allogeneic
R12929 T15464 T15462 arg1Of cells,CD4+
R12930 T15464 T15463 arg1Of cells,T
R12931 T15464 T15465 arg1Of cells,without
R12932 T15466 T15465 arg2Of co-culture,without
R12933 T15466 T15467 arg1Of co-culture,with
R12934 T15469 T15467 arg2Of BMDC,with
R12935 T15469 T15468 arg2Of BMDC,stimulated
R12936 T15470 T15471 arg1Of Samples,from
R12937 T15470 T15475 arg1Of Samples,had
R12938 T15474 T15471 arg2Of controls,from
R12939 T15474 T15472 arg1Of controls,both
R12940 T15474 T15473 arg1Of controls,negative
R12941 T15478 T15475 arg2Of production,had
R12942 T15478 T15476 arg1Of production,no
R12943 T15478 T15477 arg1Of production,detectable
R12944 T15478 T15479 arg1Of production,of
R12945 T15482 T15479 arg2Of cytokines,of
R12946 T15482 T15480 arg1Of cytokines,the
R12947 T15482 T15481 arg1Of cytokines,aforementioned
R12948 T15482 T15483 arg1Of cytokines,(
R12949 T15485 T15483 arg2Of shown,(
R12950 T15485 T15484 arg1Of shown,not
R12951 T15486 T15483 arg3Of ),(
R12952 T15487 T15488 arg1Of Results,are
R12953 T15487 T15489 arg2Of Results,analyzed
R12954 T15489 T15488 arg2Of analyzed,are
R12955 T15489 T15490 arg1Of analyzed,based
R12956 T15491 T15490 arg2Of on,based
R12957 T15493 T15491 arg2Of mice,on
R12958 T15493 T15492 arg1Of mice,2–4
R12959 T15493 T15494 arg1Of mice,per
R12960 T15495 T15494 arg2Of group.,per
R12961 T15499 T15489 arg3Of 0.05,analyzed
R12962 T15499 T15496 arg1Of 0.05,*
R12963 T15499 T15497 arg1Of 0.05,P
R12964 T15499 T15498 arg1Of 0.05,<

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T15500 793-821 Anaphor denotes the aforementioned cytokines
T15501 524-528 Antecedent denotes IFNγ
T15502 530-533 Antecedent denotes IL4
T15503 539-542 Antecedent denotes IL2
R12965 T15500 T15501 boundBy the aforementioned cytokines,IFNγ
R12966 T15500 T15502 boundBy the aforementioned cytokines,IL4
R12967 T15500 T15503 boundBy the aforementioned cytokines,IL2

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15510 44-54 VBN denotes Stimulated
T15511 55-59 NN denotes cpdm
T15512 60-64 NNP denotes BMDC
T15513 65-72 VBD denotes induced
T15514 73-83 JJ denotes Th2-biased
T15515 84-92 NN denotes cytokine
T15516 93-103 NN denotes production
T15517 104-108 IN denotes from
T15518 109-114 NN denotes naïve
T15519 115-118 NNP denotes CD4
T15520 118-119 NNP denotes +
T15521 120-121 NNP denotes T
T15522 122-127 NNS denotes cells
T15523 127-128 . denotes .
T15524 129-131 NNP denotes WT
T15525 132-135 CC denotes and
T15526 136-140 VB denotes cpdm
T15527 141-145 NNP denotes BMDC
T15528 146-147 -LRB- denotes (
T15529 147-148 CD denotes 5
T15530 148-149 CD denotes ×
T15531 149-152 CD denotes 104
T15532 153-158 NNS denotes cells
T15533 159-161 IN denotes in
T15534 162-165 CD denotes 0.1
T15535 166-168 NNP denotes mL
T15536 169-177 JJ denotes complete
T15537 178-184 NN denotes medium
T15538 184-185 : denotes ;
T15539 186-189 NNP denotes MHC
T15540 190-199 NN denotes haplotype
T15541 199-200 : denotes :
T15542 201-205 NN denotes H-2b
T15543 205-206 -RRB- denotes )
T15544 207-211 VBD denotes were
T15545 212-221 VBN denotes incubated
T15546 222-226 IN denotes with
T15547 227-233 NN denotes medium
T15548 233-234 , denotes ,
T15549 235-238 CD denotes 100
T15550 239-244 NNP denotes ng/mL
T15551 245-248 NNP denotes LPS
T15552 248-249 , denotes ,
T15553 250-252 CD denotes 25
T15554 253-255 NN denotes µg
T15555 255-256 CD denotes /
T15556 256-258 NNP denotes mL
T15557 259-263 NN denotes poly
T15558 264-265 PRP denotes I
T15559 265-266 : denotes :
T15560 266-267 NNP denotes C
T15561 268-270 CC denotes or
T15562 271-272 CD denotes 5
T15563 273-275 NN denotes µg
T15564 275-276 NN denotes /
T15565 276-278 NNP denotes mL
T15566 279-286 NNP denotes Pam3CYS
T15567 286-287 . denotes .
T15568 288-293 IN denotes After
T15569 294-296 CD denotes 24
T15570 297-302 NNS denotes hours
T15571 302-303 , denotes ,
T15572 304-309 NNS denotes cells
T15573 310-314 VBD denotes were
T15574 315-321 VBN denotes washed
T15575 322-326 IN denotes with
T15576 327-330 NNP denotes PBS
T15577 331-334 CC denotes and
T15578 335-344 VBN denotes incubated
T15579 345-349 IN denotes with
T15580 350-357 RB denotes freshly
T15581 358-366 VBN denotes isolated
T15582 367-377 JJ denotes allogeneic
T15583 378-383 NN denotes naïve
T15584 384-387 NNP denotes CD4
T15585 387-388 NNP denotes +
T15586 389-390 NNP denotes T
T15587 391-396 NNS denotes cells
T15588 397-398 -LRB- denotes (
T15589 398-401 CD denotes 2.5
T15590 401-402 CD denotes ×
T15591 402-405 CD denotes 105
T15592 406-411 NNS denotes cells
T15593 412-414 IN denotes in
T15594 415-418 CD denotes 0.1
T15595 419-421 NNP denotes mL
T15596 422-430 JJ denotes complete
T15597 431-437 NN denotes medium
T15598 437-438 : denotes ;
T15599 439-442 NNP denotes MHC
T15600 443-452 NN denotes haplotype
T15601 452-453 : denotes :
T15602 454-458 NN denotes H-2d
T15603 458-459 -RRB- denotes )
T15616 524-528 NNP denotes IFNγ
T15617 528-529 , denotes ,
T15618 530-533 NNP denotes IL4
T15619 533-534 , denotes ,
T15620 535-538 CC denotes and
T15621 539-542 NNP denotes IL2
T15622 543-547 VBD denotes were
T15623 548-556 VBN denotes measured
T15624 557-559 IN denotes by
T15625 560-565 NNP denotes ELISA
T15626 565-566 . denotes .
T15627 567-575 JJ denotes Negative
T15628 576-584 NNS denotes controls
T15629 585-588 VBP denotes are
T15630 589-590 CD denotes 1
T15631 590-591 -RRB- denotes )
T15632 592-602 VBD denotes stimulated
T15633 603-607 NNP denotes BMDC
T15634 608-615 IN denotes without
T15635 616-626 NN denotes co-culture
T15636 627-631 IN denotes with
T15637 632-642 JJ denotes allogeneic
T15638 643-646 NNP denotes CD4
T15639 646-647 CD denotes +
T15640 648-649 NNP denotes T
T15641 650-655 NNS denotes cells
T15642 655-656 : denotes ;
T15643 657-658 LS denotes 2
T15644 658-659 -RRB- denotes )
T15645 660-670 JJ denotes allogeneic
T15646 671-674 NNP denotes CD4
T15647 674-675 CD denotes +
T15648 676-677 NNP denotes T
T15649 678-683 NNS denotes cells
T15650 684-691 IN denotes without
T15651 692-702 NN denotes co-culture
T15652 703-707 IN denotes with
T15653 708-718 VBN denotes stimulated
T15654 719-723 NNP denotes BMDC
T15655 723-724 . denotes .
T15656 725-732 NNS denotes Samples
T15657 733-737 IN denotes from
T15658 738-742 DT denotes both
T15659 743-751 JJ denotes negative
T15660 752-760 NNS denotes controls
T15661 761-764 VBD denotes had
T15662 765-767 DT denotes no
T15663 768-778 JJ denotes detectable
T15664 779-789 NN denotes production
T15665 790-792 IN denotes of
T15666 793-796 DT denotes the
T15667 797-811 JJ denotes aforementioned
T15668 812-821 NNS denotes cytokines
T15669 822-823 -LRB- denotes (
T15670 823-826 RB denotes not
T15671 827-832 VBN denotes shown
T15672 832-833 -RRB- denotes )
T15673 833-834 . denotes .
T15674 835-842 NNS denotes Results
T15675 843-846 VBP denotes are
T15676 847-855 VBN denotes analyzed
T15677 856-861 VBN denotes based
T15678 862-864 IN denotes on
T15679 865-866 CD denotes 2
T15680 867-868 CD denotes 4
T15681 869-873 NNS denotes mice
T15682 874-877 IN denotes per
T15683 878-883 NN denotes group
T15684 883-884 . denotes .
T15685 885-886 SYM denotes *
T15686 887-888 NN denotes P
T15687 888-889 NN denotes <
T15688 889-893 CD denotes 0.05
T15689 893-894 . denotes .
T15604 459-460 . denotes .
T15605 461-466 IN denotes After
T15606 467-468 CD denotes 5
T15607 469-473 NNS denotes days
T15608 473-474 , denotes ,
T15609 475-487 NNS denotes supernatants
T15610 488-492 VBD denotes were
T15611 493-502 VBN denotes collected
T15612 503-506 CC denotes and
T15613 507-510 DT denotes the
T15614 511-520 NN denotes secretion
T15615 521-523 IN denotes of
R12968 T15510 T15513 advcl Stimulated,induced
R12969 T15511 T15512 compound cpdm,BMDC
R12970 T15512 T15513 nsubj BMDC,induced
R12971 T15513 T15513 ROOT induced,induced
R12972 T15514 T15516 amod Th2-biased,production
R12973 T15515 T15516 compound cytokine,production
R12974 T15516 T15513 dobj production,induced
R12975 T15517 T15516 prep from,production
R12976 T15518 T15522 amod naïve,cells
R12977 T15519 T15522 compound CD4,cells
R12978 T15520 T15522 compound +,cells
R12979 T15521 T15522 compound T,cells
R12980 T15522 T15517 pobj cells,from
R12981 T15523 T15513 punct .,induced
R12982 T15524 T15532 nmod WT,cells
R12983 T15525 T15524 cc and,WT
R12984 T15526 T15527 compound cpdm,BMDC
R12985 T15527 T15524 conj BMDC,WT
R12986 T15528 T15529 punct (,5
R12987 T15529 T15532 nummod 5,cells
R12988 T15530 T15532 nummod ×,cells
R12989 T15531 T15532 nummod 104,cells
R12990 T15532 T15532 ROOT cells,cells
R12991 T15533 T15532 prep in,cells
R12992 T15534 T15537 nummod 0.1,medium
R12993 T15535 T15537 nmod mL,medium
R12994 T15536 T15537 amod complete,medium
R12995 T15537 T15533 pobj medium,in
R12996 T15538 T15532 punct ;,cells
R12997 T15539 T15532 appos MHC,cells
R12998 T15540 T15545 nsubjpass haplotype,incubated
R12999 T15541 T15540 punct :,haplotype
R13000 T15542 T15540 appos H-2b,haplotype
R13001 T15543 T15540 punct ),haplotype
R13002 T15544 T15545 auxpass were,incubated
R13003 T15545 T15545 ROOT incubated,incubated
R13004 T15546 T15545 prep with,incubated
R13005 T15547 T15546 pobj medium,with
R13006 T15548 T15547 punct ",",medium
R13007 T15549 T15551 nummod 100,LPS
R13008 T15550 T15551 compound ng/mL,LPS
R13009 T15551 T15547 conj LPS,medium
R13010 T15552 T15551 punct ",",LPS
R13011 T15553 T15555 quantmod 25,/
R13012 T15554 T15555 quantmod µg,/
R13013 T15555 T15557 npadvmod /,poly
R13014 T15556 T15557 compound mL,poly
R13015 T15557 T15558 dep poly,I
R13016 T15558 T15545 advcl I,incubated
R13017 T15559 T15558 punct :,I
R13018 T15560 T15558 appos C,I
R13019 T15561 T15560 cc or,C
R13020 T15562 T15564 nummod 5,/
R13021 T15563 T15564 compound µg,/
R13022 T15564 T15566 compound /,Pam3CYS
R13023 T15565 T15566 compound mL,Pam3CYS
R13024 T15566 T15560 conj Pam3CYS,C
R13025 T15567 T15545 punct .,incubated
R13026 T15568 T15574 prep After,washed
R13027 T15569 T15570 nummod 24,hours
R13028 T15570 T15568 pobj hours,After
R13029 T15571 T15574 punct ",",washed
R13030 T15572 T15574 nsubjpass cells,washed
R13031 T15573 T15574 auxpass were,washed
R13032 T15574 T15574 ROOT washed,washed
R13033 T15575 T15574 prep with,washed
R13034 T15576 T15575 pobj PBS,with
R13035 T15577 T15574 cc and,washed
R13036 T15578 T15574 conj incubated,washed
R13037 T15579 T15578 prep with,incubated
R13038 T15580 T15581 advmod freshly,isolated
R13039 T15581 T15583 amod isolated,naïve
R13040 T15582 T15583 amod allogeneic,naïve
R13041 T15583 T15587 compound naïve,cells
R13042 T15584 T15587 compound CD4,cells
R13043 T15585 T15587 compound +,cells
R13044 T15586 T15587 compound T,cells
R13045 T15587 T15579 pobj cells,with
R13046 T15588 T15587 punct (,cells
R13047 T15589 T15592 nummod 2.5,cells
R13048 T15590 T15592 nummod ×,cells
R13049 T15591 T15592 nummod 105,cells
R13050 T15592 T15587 appos cells,cells
R13051 T15593 T15592 prep in,cells
R13052 T15594 T15597 nummod 0.1,medium
R13053 T15595 T15597 nmod mL,medium
R13054 T15596 T15597 amod complete,medium
R13055 T15597 T15593 pobj medium,in
R13056 T15598 T15587 punct ;,cells
R13057 T15599 T15600 compound MHC,haplotype
R13058 T15600 T15578 conj haplotype,incubated
R13059 T15601 T15600 punct :,haplotype
R13060 T15602 T15600 appos H-2d,haplotype
R13061 T15603 T15600 punct ),haplotype
R13062 T15604 T15574 punct .,washed
R13063 T15605 T15611 prep After,collected
R13064 T15606 T15607 nummod 5,days
R13065 T15607 T15605 pobj days,After
R13066 T15608 T15611 punct ",",collected
R13067 T15609 T15611 nsubjpass supernatants,collected
R13068 T15610 T15611 auxpass were,collected
R13069 T15611 T15611 ROOT collected,collected
R13070 T15612 T15611 cc and,collected
R13071 T15613 T15614 det the,secretion
R13072 T15614 T15623 nsubjpass secretion,measured
R13073 T15615 T15614 prep of,secretion
R13074 T15616 T15615 pobj IFNγ,of
R13075 T15617 T15616 punct ",",IFNγ
R13076 T15618 T15616 conj IL4,IFNγ
R13077 T15619 T15618 punct ",",IL4
R13078 T15620 T15618 cc and,IL4
R13079 T15621 T15618 conj IL2,IL4
R13080 T15622 T15623 auxpass were,measured
R13081 T15623 T15611 conj measured,collected
R13082 T15624 T15623 agent by,measured
R13083 T15625 T15624 pobj ELISA,by
R13084 T15626 T15623 punct .,measured
R13085 T15627 T15628 amod Negative,controls
R13086 T15628 T15629 nsubj controls,are
R13087 T15629 T15653 ccomp are,stimulated
R13088 T15630 T15629 attr 1,are
R13089 T15631 T15630 punct ),1
R13090 T15632 T15629 conj stimulated,are
R13091 T15633 T15632 dobj BMDC,stimulated
R13092 T15634 T15632 prep without,stimulated
R13093 T15635 T15634 pobj co-culture,without
R13094 T15636 T15632 prep with,stimulated
R13095 T15637 T15641 amod allogeneic,cells
R13096 T15638 T15641 compound CD4,cells
R13097 T15639 T15641 nummod +,cells
R13098 T15640 T15641 compound T,cells
R13099 T15641 T15636 pobj cells,with
R13100 T15642 T15653 punct ;,stimulated
R13101 T15643 T15649 meta 2,cells
R13102 T15644 T15643 punct ),2
R13103 T15645 T15649 amod allogeneic,cells
R13104 T15646 T15649 compound CD4,cells
R13105 T15647 T15649 nummod +,cells
R13106 T15648 T15649 compound T,cells
R13107 T15649 T15653 nsubj cells,stimulated
R13108 T15650 T15649 prep without,cells
R13109 T15651 T15650 pobj co-culture,without
R13110 T15652 T15649 prep with,cells
R13111 T15653 T15653 ROOT stimulated,stimulated
R13112 T15654 T15653 dobj BMDC,stimulated
R13113 T15655 T15653 punct .,stimulated
R13114 T15656 T15661 nsubj Samples,had
R13115 T15657 T15656 prep from,Samples
R13116 T15658 T15660 det both,controls
R13117 T15659 T15660 amod negative,controls
R13118 T15660 T15657 pobj controls,from
R13119 T15661 T15661 ROOT had,had
R13120 T15662 T15664 det no,production
R13121 T15663 T15664 amod detectable,production
R13122 T15664 T15661 dobj production,had
R13123 T15665 T15664 prep of,production
R13124 T15666 T15668 det the,cytokines
R13142 T15684 T15676 punct .,analyzed
R13143 T15685 T15687 punct *,<
R13144 T15686 T15687 compound P,<
R13145 T15687 T15688 compound <,0.05
R13146 T15688 T15688 ROOT 0.05,0.05
R13147 T15689 T15688 punct .,0.05
R13125 T15667 T15668 amod aforementioned,cytokines
R13126 T15668 T15665 pobj cytokines,of
R13127 T15669 T15671 punct (,shown
R13128 T15670 T15671 neg not,shown
R13129 T15671 T15664 parataxis shown,production
R13130 T15672 T15664 punct ),production
R13131 T15673 T15661 punct .,had
R13132 T15674 T15676 nsubjpass Results,analyzed
R13133 T15675 T15676 auxpass are,analyzed
R13134 T15676 T15676 ROOT analyzed,analyzed
R13135 T15677 T15676 prep based,analyzed
R13136 T15678 T15677 prep on,based
R13137 T15679 T15678 pobj 2,on
R13138 T15680 T15681 nummod 4,mice
R13139 T15681 T15679 appos mice,2
R13140 T15682 T15681 prep per,mice
R13141 T15683 T15682 pobj group,per

GO-BP

Id Subject Object Predicate Lexical cue
T15697 84-103 http://purl.obolibrary.org/obo/GO_0001816 denotes cytokine production
T15698 511-520 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

GO-CC

Id Subject Object Predicate Lexical cue
T15699 122-127 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15700 153-158 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15701 304-309 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15702 391-396 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15703 406-411 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15704 650-655 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15705 678-683 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T15334 44-128 Sentence denotes Stimulated cpdm BMDC induced Th2-biased cytokine production from naïve CD4+ T cells.
T15335 129-287 Sentence denotes WT and cpdm BMDC (5×104 cells in 0.1 mL complete medium; MHC haplotype: H-2b) were incubated with medium, 100 ng/mL LPS, 25 µg/mL poly I:C or 5 µg/mL Pam3CYS.
T15336 288-460 Sentence denotes After 24 hours, cells were washed with PBS and incubated with freshly isolated allogeneic naïve CD4+ T cells (2.5×105 cells in 0.1 mL complete medium; MHC haplotype: H-2d).
T15337 461-566 Sentence denotes After 5 days, supernatants were collected and the secretion of IFNγ, IL4, and IL2 were measured by ELISA.
T15338 567-724 Sentence denotes Negative controls are 1) stimulated BMDC without co-culture with allogeneic CD4+ T cells; 2) allogeneic CD4+ T cells without co-culture with stimulated BMDC.
T15339 725-834 Sentence denotes Samples from both negative controls had no detectable production of the aforementioned cytokines (not shown).
T15340 835-894 Sentence denotes Results are analyzed based on 2–4 mice per group. * P<0.05.
T123 0-128 Sentence denotes 10.1371/journal.pone.0031809.g007 Figure 7 Stimulated cpdm BMDC induced Th2-biased cytokine production from naïve CD4+ T cells.
T124 129-287 Sentence denotes WT and cpdm BMDC (5×104 cells in 0.1 mL complete medium; MHC haplotype: H-2b) were incubated with medium, 100 ng/mL LPS, 25 µg/mL poly I:C or 5 µg/mL Pam3CYS.
T125 288-460 Sentence denotes After 24 hours, cells were washed with PBS and incubated with freshly isolated allogeneic naïve CD4+ T cells (2.5×105 cells in 0.1 mL complete medium; MHC haplotype: H-2d).
T126 461-566 Sentence denotes After 5 days, supernatants were collected and the secretion of IFNγ, IL4, and IL2 were measured by ELISA.
T127 567-724 Sentence denotes Negative controls are 1) stimulated BMDC without co-culture with allogeneic CD4+ T cells; 2) allogeneic CD4+ T cells without co-culture with stimulated BMDC.
T128 725-834 Sentence denotes Samples from both negative controls had no detectable production of the aforementioned cytokines (not shown).
T129 835-894 Sentence denotes Results are analyzed based on 2–4 mice per group. * P<0.05.

events-check-again

Id Subject Object Predicate Lexical cue Negation Speculation
T15724 511-520 Gene_expression denotes secretion true
T15725 511-520 Gene_expression denotes secretion true
T15726 511-520 Gene_expression denotes secretion true
T15727 524-528 Protein denotes IFNγ
T15728 530-533 Protein denotes IL4
T15729 539-542 Protein denotes IL2
T15730 779-789 Gene_expression denotes production true
T15731 779-789 Gene_expression denotes production true
T15732 779-789 Gene_expression denotes production true
R13160 T15727 T15726 themeOf IFNγ,secretion
R13161 T15727 T15730 themeOf IFNγ,production
R13162 T15728 T15724 themeOf IL4,secretion
R13163 T15728 T15731 themeOf IL4,production
R13164 T15729 T15732 themeOf IL2,production
R13165 T15729 T15725 themeOf IL2,secretion

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T15733 115-119 Protein denotes CD4+
T15734 186-205 Protein denotes MHC haplotype: H-2b
T15735 384-388 Protein denotes CD4+
T15736 439-452 Protein denotes MHC haplotype
T15737 524-528 Protein denotes IFNγ
T15738 530-533 Protein denotes IL4
T15739 539-542 Protein denotes IL2
T15740 511-520 Localization denotes secretion
T15741 511-520 Localization denotes secretion
T15742 511-520 Localization denotes secretion
R13166 T15737 T15740 themeOf IFNγ,secretion
R13167 T15738 T15741 themeOf IL4,secretion
R13168 T15739 T15742 themeOf IL2,secretion

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation Speculation
T15325 511-520 Gene_expression denotes secretion true
T15326 511-520 Gene_expression denotes secretion true
T15327 511-520 Gene_expression denotes secretion true
T15328 524-528 Protein denotes IFNγ
T15329 530-533 Protein denotes IL4
T15330 539-542 Protein denotes IL2
T15331 779-789 Gene_expression denotes production true
T15332 779-789 Gene_expression denotes production true
T15333 779-789 Gene_expression denotes production true
R12800 T15328 T15327 themeOf IFNγ,secretion
R12801 T15328 T15331 themeOf IFNγ,production
R12802 T15329 T15325 themeOf IL4,secretion
R12803 T15329 T15332 themeOf IL4,production
R12804 T15330 T15333 themeOf IL2,production
R12805 T15330 T15326 themeOf IL2,secretion

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15504 115-118 P01730 denotes CD4
T15505 384-387 P01730 denotes CD4
T15506 530-533 P05112 denotes IL4
T15507 539-542 P60568 denotes IL2
T15508 643-646 P01730 denotes CD4
T15509 671-674 P01730 denotes CD4