PMC:3279418 / 16251-16439 JSONTXT

Annnotations TAB JSON ListView MergeView

    pmc-enju-pas

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T15172","span":{"begin":0,"end":2},"obj":"IN"},{"id":"T15173","span":{"begin":3,"end":4},"obj":"CD"},{"id":"T15174","span":{"begin":4,"end":5},"obj":","},{"id":"T15175","span":{"begin":6,"end":8},"obj":"CD"},{"id":"T15176","span":{"begin":8,"end":9},"obj":","},{"id":"T15177","span":{"begin":10,"end":12},"obj":"CD"},{"id":"T15178","span":{"begin":12,"end":13},"obj":","},{"id":"T15179","span":{"begin":14,"end":17},"obj":"CC"},{"id":"T15180","span":{"begin":18,"end":20},"obj":"CD"},{"id":"T15181","span":{"begin":21,"end":28},"obj":"NNS"},{"id":"T15182","span":{"begin":28,"end":29},"obj":","},{"id":"T15183","span":{"begin":30,"end":40},"obj":"JJ"},{"id":"T15184","span":{"begin":41,"end":48},"obj":"NNS"},{"id":"T15185","span":{"begin":49,"end":53},"obj":"VBD"},{"id":"T15186","span":{"begin":54,"end":62},"obj":"VBN"},{"id":"T15187","span":{"begin":63,"end":66},"obj":"CC"},{"id":"T15188","span":{"begin":67,"end":74},"obj":"JJ"},{"id":"T15189","span":{"begin":75,"end":77},"obj":"TO"},{"id":"T15190","span":{"begin":78,"end":89},"obj":"NNS"},{"id":"T15191","span":{"begin":90,"end":94},"obj":"IN"},{"id":"T15192","span":{"begin":95,"end":105},"obj":"NNS"},{"id":"T15193","span":{"begin":106,"end":113},"obj":"IN"},{"id":"T15194","span":{"begin":114,"end":122},"obj":"NNS"},{"id":"T15195","span":{"begin":123,"end":131},"obj":"VBN"},{"id":"T15196","span":{"begin":132,"end":134},"obj":"IN"},{"id":"T15197","span":{"begin":135,"end":140},"obj":"NNP"},{"id":"T15198","span":{"begin":140,"end":141},"obj":","},{"id":"T15199","span":{"begin":142,"end":151},"obj":"NNP"},{"id":"T15200","span":{"begin":151,"end":152},"obj":","},{"id":"T15201","span":{"begin":153,"end":159},"obj":"NNP"},{"id":"T15202","span":{"begin":159,"end":160},"obj":","},{"id":"T15203","span":{"begin":161,"end":164},"obj":"CC"},{"id":"T15204","span":{"begin":165,"end":168},"obj":"CD"},{"id":"T15205","span":{"begin":169,"end":178},"obj":"VBG"},{"id":"T15206","span":{"begin":179,"end":187},"obj":"NNS"},{"id":"T15207","span":{"begin":187,"end":188},"obj":"."}],"relations":[{"id":"R12706","pred":"prep","subj":"T15172","obj":"T15186"},{"id":"R12707","pred":"pobj","subj":"T15173","obj":"T15172"},{"id":"R12708","pred":"punct","subj":"T15174","obj":"T15177"},{"id":"R12709","pred":"quantmod","subj":"T15175","obj":"T15177"},{"id":"R12710","pred":"punct","subj":"T15176","obj":"T15177"},{"id":"R12711","pred":"appos","subj":"T15177","obj":"T15173"},{"id":"R12712","pred":"punct","subj":"T15178","obj":"T15177"},{"id":"R12713","pred":"cc","subj":"T15179","obj":"T15177"},{"id":"R12714","pred":"nummod","subj":"T15180","obj":"T15181"},{"id":"R12715","pred":"npadvmod","subj":"T15181","obj":"T15186"},{"id":"R12716","pred":"punct","subj":"T15182","obj":"T15186"},{"id":"R12717","pred":"amod","subj":"T15183","obj":"T15184"},{"id":"R12718","pred":"nsubjpass","subj":"T15184","obj":"T15186"},{"id":"R12719","pred":"auxpass","subj":"T15185","obj":"T15186"},{"id":"R12720","pred":"ROOT","subj":"T15186","obj":"T15186"},{"id":"R12721","pred":"cc","subj":"T15187","obj":"T15186"},{"id":"R12722","pred":"conj","subj":"T15188","obj":"T15186"},{"id":"R12723","pred":"prep","subj":"T15189","obj":"T15188"},{"id":"R12724","pred":"pobj","subj":"T15190","obj":"T15189"},{"id":"R12725","pred":"prep","subj":"T15191","obj":"T15190"},{"id":"R12726","pred":"pobj","subj":"T15192","obj":"T15191"},{"id":"R12727","pred":"prep","subj":"T15193","obj":"T15190"},{"id":"R12728","pred":"pobj","subj":"T15194","obj":"T15193"},{"id":"R12729","pred":"acl","subj":"T15195","obj":"T15194"},{"id":"R12730","pred":"prep","subj":"T15196","obj":"T15195"},{"id":"R12731","pred":"pobj","subj":"T15197","obj":"T15196"},{"id":"R12732","pred":"punct","subj":"T15198","obj":"T15197"},{"id":"R12733","pred":"conj","subj":"T15199","obj":"T15197"},{"id":"R12734","pred":"punct","subj":"T15200","obj":"T15199"},{"id":"R12735","pred":"conj","subj":"T15201","obj":"T15199"},{"id":"R12736","pred":"punct","subj":"T15202","obj":"T15201"},{"id":"R12737","pred":"cc","subj":"T15203","obj":"T15201"},{"id":"R12738","pred":"nummod","subj":"T15204","obj":"T15206"},{"id":"R12739","pred":"compound","subj":"T15205","obj":"T15206"},{"id":"R12740","pred":"appos","subj":"T15206","obj":"T15197"},{"id":"R12741","pred":"punct","subj":"T15207","obj":"T15186"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T15264","span":{"begin":169,"end":178},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T15265","span":{"begin":142,"end":146},"obj":"http://purl.obolibrary.org/obo/GO_0008384"},{"id":"T15266","span":{"begin":153,"end":157},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T15267","span":{"begin":165,"end":168},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T15268","span":{"begin":169,"end":187},"obj":"http://purl.obolibrary.org/obo/GO_0007165"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T15271","span":{"begin":95,"end":105},"obj":"http://purl.obolibrary.org/obo/GO_0003823"},{"id":"T15272","span":{"begin":142,"end":146},"obj":"http://purl.obolibrary.org/obo/GO_0008384"},{"id":"T15273","span":{"begin":153,"end":157},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T15274","span":{"begin":165,"end":168},"obj":"http://purl.obolibrary.org/obo/GO_0004707"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T15276","span":{"begin":36,"end":40},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T15277","span":{"begin":95,"end":105},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T15278","span":{"begin":95,"end":105},"obj":"http://purl.obolibrary.org/obo/GO_0042571"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}

    sentences

    {"project":"sentences","denotations":[{"id":"T14995","span":{"begin":0,"end":188},"obj":"Sentence"},{"id":"T110","span":{"begin":0,"end":188},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T15295","span":{"begin":142,"end":146},"obj":"Protein"},{"id":"T15296","span":{"begin":147,"end":151},"obj":"Protein"},{"id":"T15297","span":{"begin":153,"end":157},"obj":"Protein"},{"id":"T15298","span":{"begin":158,"end":159},"obj":"Protein"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T15305","span":{"begin":135,"end":140},"obj":"Protein"},{"id":"T15306","span":{"begin":142,"end":146},"obj":"Protein"},{"id":"T15307","span":{"begin":147,"end":151},"obj":"Protein"},{"id":"T15308","span":{"begin":153,"end":157},"obj":"Protein"},{"id":"T15309","span":{"begin":165,"end":168},"obj":"Protein"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T14985","span":{"begin":142,"end":146},"obj":"Protein"},{"id":"T14986","span":{"begin":147,"end":151},"obj":"Protein"},{"id":"T14987","span":{"begin":153,"end":157},"obj":"Protein"},{"id":"T14988","span":{"begin":158,"end":159},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T15116","span":{"begin":142,"end":146},"obj":"Q9UHD2"},{"id":"T15117","span":{"begin":147,"end":151},"obj":"Q14653"},{"id":"T15118","span":{"begin":153,"end":157},"obj":"P27361"},{"id":"T15119","span":{"begin":165,"end":168},"obj":"O15264"},{"id":"T15120","span":{"begin":165,"end":168},"obj":"P53778"},{"id":"T15121","span":{"begin":165,"end":168},"obj":"Q16539"},{"id":"T15122","span":{"begin":165,"end":168},"obj":"Q15759"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}

    test2

    {"project":"test2","denotations":[{"id":"T14977","span":{"begin":142,"end":146},"obj":"Protein"},{"id":"T14978","span":{"begin":147,"end":151},"obj":"Protein"},{"id":"T14979","span":{"begin":153,"end":157},"obj":"Protein"},{"id":"T14980","span":{"begin":158,"end":159},"obj":"Protein"}],"text":"At 0, 15, 30, and 60 minutes, whole-cell lysates were obtained and subject to immunoblots with antibodies against proteins involved in NF-κB, TBK1/IRF3, ERK1/2, and p38 signaling pathways."}