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PMC:3279418 / 14049-14239 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5114 0-7 RB denotes However
T5115 7-8 -COMMA- denotes ,
T5116 9-12 DT denotes the
T5117 13-23 NN denotes transcript
T5118 24-29 NN denotes level
T5119 30-32 IN denotes of
T5120 33-36 NN denotes A20
T5121 37-40 VB denotes was
T5122 41-46 JJ denotes lower
T5123 47-49 IN denotes in
T5124 50-63 JJ denotes LPS-activated
T5125 64-68 NN denotes cpdm
T5126 69-73 NN denotes BMDC
T5127 74-78 IN denotes than
T5128 79-81 JJ denotes WT
T5129 82-90 NN denotes controls
T5130 91-92 -LRB- denotes (
T5131 92-96 NNP denotes Fig.
T5132 97-99 NN denotes 5C
T5133 99-100 -RRB- denotes )
T5134 100-101 -COMMA- denotes ,
T5135 102-109 RB denotes thereby
T5136 110-116 VB denotes ruling
T5137 117-120 RP denotes out
T5138 121-135 NN denotes overexpression
T5139 136-138 IN denotes of
T5140 139-142 NN denotes A20
T5141 143-145 IN denotes as
T5142 146-147 DT denotes a
T5143 148-154 NN denotes factor
T5144 155-157 IN denotes in
T5145 158-161 DT denotes the
T5146 162-169 VB denotes reduced
T5147 170-178 NN denotes cytokine
T5148 179-189 NN denotes production
R4247 T5118 T5116 arg1Of level,the
R4248 T5118 T5117 arg1Of level,transcript
R4249 T5118 T5119 arg1Of level,of
R4250 T5118 T5121 arg1Of level,was
R4251 T5118 T5122 arg1Of level,lower
R4252 T5118 T5136 arg1Of level,ruling
R4253 T5120 T5119 arg2Of A20,of
R4254 T5121 T5114 arg1Of was,However
R4255 T5121 T5115 arg1Of was,","
R4256 T5121 T5130 arg1Of was,(
R4257 T5121 T5134 arg1Of was,","
R4258 T5121 T5136 modOf was,ruling
R4259 T5122 T5121 arg2Of lower,was
R4260 T5122 T5123 arg1Of lower,in
R4261 T5122 T5127 arg1Of lower,than
R4262 T5126 T5123 arg2Of BMDC,in
R4263 T5126 T5124 arg1Of BMDC,LPS-activated
R4264 T5126 T5125 arg1Of BMDC,cpdm
R4265 T5129 T5127 arg2Of controls,than
R4266 T5129 T5128 arg1Of controls,WT
R4267 T5132 T5130 arg2Of 5C,(
R4268 T5132 T5131 arg1Of 5C,Fig.
R4269 T5133 T5130 arg3Of ),(
R4270 T5136 T5135 arg1Of ruling,thereby
R4271 T5136 T5137 arg1Of ruling,out
R4272 T5136 T5141 arg1Of ruling,as
R4273 T5138 T5136 arg2Of overexpression,ruling
R4274 T5138 T5139 arg1Of overexpression,of
R4275 T5140 T5139 arg2Of A20,of
R4276 T5143 T5141 arg2Of factor,as
R4277 T5143 T5142 arg1Of factor,a
R4278 T5143 T5144 arg1Of factor,in
R4279 T5148 T5144 arg2Of production,in
R4280 T5148 T5145 arg1Of production,the
R4281 T5148 T5146 arg2Of production,reduced
R4282 T5148 T5147 arg1Of production,cytokine

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4697 0-7 RB denotes However
T4698 7-8 , denotes ,
T4699 9-12 DT denotes the
T4700 13-23 NN denotes transcript
T4701 24-29 NN denotes level
T4702 30-32 IN denotes of
T4703 33-36 NNP denotes A20
T4704 37-40 VBD denotes was
T4705 41-46 JJR denotes lower
T4706 47-49 IN denotes in
T4707 50-63 JJ denotes LPS-activated
T4708 64-68 NN denotes cpdm
T4709 69-73 NNP denotes BMDC
T4710 74-78 IN denotes than
T4711 79-81 NNP denotes WT
T4712 82-90 NNS denotes controls
T4713 91-92 -LRB- denotes (
T4714 92-96 NNP denotes Fig.
T4715 97-99 NNP denotes 5C
T4716 99-100 -RRB- denotes )
T4717 100-101 , denotes ,
T4718 102-109 RB denotes thereby
T4719 110-116 VBG denotes ruling
T4720 117-120 RP denotes out
T4721 121-135 NN denotes overexpression
T4722 136-138 IN denotes of
T4723 139-142 NNP denotes A20
T4724 143-145 IN denotes as
T4725 146-147 DT denotes a
T4726 148-154 NN denotes factor
T4727 155-157 IN denotes in
T4728 158-161 DT denotes the
T4729 162-169 VBN denotes reduced
T4730 170-178 NN denotes cytokine
T4731 179-189 NN denotes production
T4732 189-190 . denotes .
R3832 T4697 T4704 advmod However,was
R3833 T4698 T4704 punct ",",was
R3834 T4699 T4701 det the,level
R3835 T4700 T4701 compound transcript,level
R3836 T4701 T4704 nsubj level,was
R3837 T4702 T4701 prep of,level
R3838 T4703 T4702 pobj A20,of
R3839 T4704 T4704 ROOT was,was
R3840 T4705 T4704 acomp lower,was
R3841 T4706 T4705 prep in,lower
R3842 T4707 T4709 amod LPS-activated,BMDC
R3843 T4708 T4709 compound cpdm,BMDC
R3844 T4709 T4706 pobj BMDC,in
R3845 T4710 T4709 prep than,BMDC
R3846 T4711 T4712 amod WT,controls
R3847 T4712 T4710 pobj controls,than
R3848 T4713 T4715 punct (,5C
R3849 T4714 T4715 compound Fig.,5C
R3850 T4715 T4712 appos 5C,controls
R3851 T4716 T4709 punct ),BMDC
R3852 T4717 T4704 punct ",",was
R3853 T4718 T4719 advmod thereby,ruling
R3854 T4719 T4704 advcl ruling,was
R3855 T4720 T4719 prt out,ruling
R3856 T4721 T4719 dobj overexpression,ruling
R3857 T4722 T4721 prep of,overexpression
R3858 T4723 T4722 pobj A20,of
R3859 T4724 T4719 prep as,ruling
R3860 T4725 T4726 det a,factor
R3861 T4726 T4724 pobj factor,as
R3862 T4727 T4726 prep in,factor
R3863 T4728 T4731 det the,production
R3864 T4729 T4731 amod reduced,production
R3865 T4730 T4731 compound cytokine,production
R3866 T4731 T4727 pobj production,in
R3867 T4732 T4704 punct .,was

GO-BP

Id Subject Object Predicate Lexical cue
T5377 170-189 http://purl.obolibrary.org/obo/GO_0001816 denotes cytokine production

sentences

Id Subject Object Predicate Lexical cue
T4482 0-190 Sentence denotes However, the transcript level of A20 was lower in LPS-activated cpdm BMDC than WT controls (Fig. 5C), thereby ruling out overexpression of A20 as a factor in the reduced cytokine production.
T96 0-190 Sentence denotes However, the transcript level of A20 was lower in LPS-activated cpdm BMDC than WT controls (Fig. 5C), thereby ruling out overexpression of A20 as a factor in the reduced cytokine production.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T5588 13-29 Transcription denotes transcript level
T5589 33-36 Protein denotes A20
T5590 41-46 Positive_regulation denotes lower true
T5591 121-135 Positive_regulation denotes overexpression
T5592 139-142 Protein denotes A20
R4523 T5588 T5590 themeOf transcript level,lower
R4524 T5589 T5588 themeOf A20,transcript level
R4525 T5592 T5591 themeOf A20,overexpression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5666 33-36 Protein denotes A20
T5667 139-142 Protein denotes A20
T5668 121-135 Gene_expression denotes overexpression
T5669 121-135 Positive_regulation denotes overexpression
T5670 110-116 Positive_regulation denotes ruling
T5671 110-116 Positive_regulation denotes ruling
R4560 T5667 T5668 themeOf A20,overexpression
R4561 T5668 T5669 themeOf overexpression,overexpression
R4562 T5668 T5670 themeOf overexpression,ruling
R4563 T5669 T5671 themeOf overexpression,ruling

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T4430 13-29 Transcription denotes transcript level
T4431 33-36 Protein denotes A20
T4432 41-46 Positive_regulation denotes lower true
T4433 121-135 Positive_regulation denotes overexpression
T4434 139-142 Protein denotes A20
R3605 T4430 T4432 themeOf transcript level,lower
R3606 T4431 T4430 themeOf A20,transcript level
R3607 T4434 T4433 themeOf A20,overexpression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5329 33-36 P21580 denotes A20
T5330 139-142 P21580 denotes A20

test2

Id Subject Object Predicate Lexical cue
T4371 13-23 Transcription denotes transcript
T4372 33-36 Protein denotes A20
T4373 121-135 Positive_regulation denotes overexpression
T4374 139-142 Protein denotes A20
R3581 T4372 T4371 themeOf A20,transcript
R3582 T4374 T4373 themeOf A20,overexpression