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PMC:3279418 / 12602-12758 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14444 0-2 IN denotes At
T14445 3-4 CD denotes 0
T14446 4-5 -COMMA- denotes ,
T14447 6-7 CD denotes 1
T14448 8-11 CC denotes and
T14449 12-13 CD denotes 2
T14450 14-19 NN denotes hours
T14451 19-20 -COMMA- denotes ,
T14452 21-26 JJ denotes total
T14453 27-30 NN denotes RNA
T14454 31-34 VB denotes was
T14455 35-44 VB denotes extracted
T14456 45-48 CC denotes and
T14457 49-56 JJ denotes subject
T14458 57-59 TO denotes to
T14459 60-67 NN denotes qRT-PCR
T14460 68-70 TO denotes to
T14461 71-78 VB denotes measure
T14462 79-82 DT denotes the
T14463 83-93 NN denotes expression
T14464 94-96 IN denotes of
T14465 97-104 NN denotes Il12p40
T14466 105-106 -LRB- denotes (
T14467 106-107 NN denotes A
T14468 107-108 -COMMA- denotes ,
T14469 108-109 NN denotes B
T14470 109-110 -RRB- denotes )
T14471 110-111 -COMMA- denotes ,
T14472 112-115 NN denotes Il6
T14473 116-117 -LRB- denotes (
T14474 117-118 NN denotes C
T14475 118-119 -COMMA- denotes ,
T14476 119-120 NN denotes D
T14477 120-121 -RRB- denotes )
T14478 121-122 -COMMA- denotes ,
T14479 123-128 NN denotes Gmcsf
T14480 129-130 -LRB- denotes (
T14481 130-131 NN denotes E
T14482 131-132 -COMMA- denotes ,
T14483 132-133 NN denotes F
T14484 133-134 -RRB- denotes )
T14485 134-135 -COMMA- denotes ,
T14486 136-139 CC denotes and
T14487 140-144 NN denotes Ifnb
T14488 145-146 -LRB- denotes (
T14489 146-147 NN denotes G
T14490 147-148 -COMMA- denotes ,
T14491 148-149 NN denotes H
T14492 149-150 -RRB- denotes )
T14493 151-155 NN denotes mRNA
R12087 T14445 T14446 arg1Of 0,","
R12088 T14446 T14448 arg1Of ",",and
R12089 T14447 T14446 arg2Of 1,","
R12090 T14449 T14448 arg2Of 2,and
R12091 T14450 T14444 arg2Of hours,At
R12092 T14450 T14445 arg1Of hours,0
R12093 T14450 T14447 arg1Of hours,1
R12094 T14450 T14449 arg1Of hours,2
R12095 T14453 T14452 arg1Of RNA,total
R12096 T14453 T14454 arg1Of RNA,was
R12097 T14453 T14455 arg2Of RNA,extracted
R12098 T14453 T14457 arg1Of RNA,subject
R12099 T14455 T14456 arg1Of extracted,and
R12100 T14456 T14444 arg1Of and,At
R12101 T14456 T14451 arg1Of and,","
R12102 T14456 T14454 arg2Of and,was
R12103 T14457 T14456 arg2Of subject,and
R12104 T14457 T14458 arg1Of subject,to
R12105 T14459 T14458 arg2Of qRT-PCR,to
R12106 T14459 T14460 modOf qRT-PCR,to
R12107 T14461 T14460 arg1Of measure,to
R12108 T14463 T14464 arg1Of expression,of
R12109 T14463 T14478 arg1Of expression,","
R12110 T14465 T14466 arg1Of Il12p40,(
R12111 T14465 T14471 arg1Of Il12p40,","
R12112 T14467 T14466 arg2Of A,(
R12113 T14467 T14468 arg1Of A,","
R12114 T14469 T14468 arg2Of B,","
R12115 T14470 T14466 arg3Of ),(
R12116 T14471 T14464 arg2Of ",",of
R12117 T14471 T14473 arg1Of ",",(
R12118 T14472 T14471 arg2Of Il6,","
R12119 T14474 T14473 arg2Of C,(
R12120 T14474 T14475 arg1Of C,","
R12121 T14476 T14475 arg2Of D,","
R12122 T14477 T14473 arg3Of ),(
R12123 T14478 T14461 arg2Of ",",measure
R12124 T14478 T14462 arg1Of ",",the
R12125 T14479 T14480 arg1Of Gmcsf,(
R12126 T14479 T14486 arg1Of Gmcsf,and
R12127 T14481 T14480 arg2Of E,(
R12128 T14481 T14482 arg1Of E,","
R12129 T14483 T14482 arg2Of F,","
R12130 T14484 T14480 arg3Of ),(
R12131 T14486 T14478 arg2Of and,","
R12132 T14486 T14485 arg1Of and,","
R12133 T14487 T14488 arg1Of Ifnb,(
R12134 T14489 T14488 arg2Of G,(
R12135 T14489 T14490 arg1Of G,","
R12136 T14489 T14491 arg1Of G,H
R12137 T14492 T14488 arg3Of ),(
R12138 T14493 T14486 arg2Of mRNA,and
R12139 T14493 T14487 arg1Of mRNA,Ifnb

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14323 0-2 IN denotes At
T14324 3-4 CD denotes 0
T14325 4-5 , denotes ,
T14326 6-7 CD denotes 1
T14327 8-11 CC denotes and
T14328 12-13 CD denotes 2
T14329 14-19 NNS denotes hours
T14330 19-20 , denotes ,
T14331 21-26 JJ denotes total
T14332 27-30 NNP denotes RNA
T14333 31-34 VBD denotes was
T14334 35-44 VBN denotes extracted
T14335 45-48 CC denotes and
T14336 49-56 JJ denotes subject
T14337 57-59 TO denotes to
T14338 60-67 NNP denotes qRT-PCR
T14339 68-70 TO denotes to
T14340 71-78 VB denotes measure
T14341 79-82 DT denotes the
T14342 83-93 NN denotes expression
T14343 94-96 IN denotes of
T14344 97-104 NNP denotes Il12p40
T14345 105-106 -LRB- denotes (
T14346 106-107 NNP denotes A
T14347 107-108 , denotes ,
T14348 108-109 NNP denotes B
T14349 109-110 -RRB- denotes )
T14350 110-111 , denotes ,
T14351 112-115 NNP denotes Il6
T14352 116-117 -LRB- denotes (
T14353 117-118 NNP denotes C
T14354 118-119 , denotes ,
T14355 119-120 NNP denotes D
T14356 120-121 -RRB- denotes )
T14357 121-122 , denotes ,
T14358 123-128 NNP denotes Gmcsf
T14359 129-130 -LRB- denotes (
T14360 130-131 NNP denotes E
T14361 131-132 , denotes ,
T14362 132-133 NN denotes F
T14363 133-134 -RRB- denotes )
T14364 134-135 , denotes ,
T14365 136-139 CC denotes and
T14366 140-144 NNP denotes Ifnb
T14367 145-146 -LRB- denotes (
T14368 146-147 NNP denotes G
T14369 147-148 , denotes ,
T14370 148-149 NNP denotes H
T14371 149-150 -RRB- denotes )
T14372 151-155 NNP denotes mRNA
T14373 155-156 . denotes .
R11965 T14323 T14334 prep At,extracted
R11966 T14324 T14323 pobj 0,At
R11967 T14325 T14334 punct ",",extracted
R11968 T14326 T14329 nummod 1,hours
R11969 T14327 T14326 cc and,1
R11970 T14328 T14326 conj 2,1
R11971 T14329 T14334 npadvmod hours,extracted
R11972 T14330 T14334 punct ",",extracted
R11973 T14331 T14332 amod total,RNA
R11974 T14332 T14334 nsubjpass RNA,extracted
R11975 T14333 T14334 auxpass was,extracted
R11976 T14334 T14334 ROOT extracted,extracted
R11977 T14335 T14334 cc and,extracted
R11978 T14336 T14372 nmod subject,mRNA
R11979 T14337 T14336 prep to,subject
R11980 T14338 T14337 pobj qRT-PCR,to
R11981 T14339 T14340 aux to,measure
R11982 T14340 T14336 xcomp measure,subject
R11983 T14341 T14342 det the,expression
R11984 T14342 T14340 dobj expression,measure
R11985 T14343 T14342 prep of,expression
R11986 T14344 T14343 pobj Il12p40,of
R11987 T14345 T14346 punct (,A
R11988 T14346 T14348 advmod A,B
R11989 T14347 T14346 punct ",",A
R11990 T14348 T14344 appos B,Il12p40
R11991 T14349 T14344 punct ),Il12p40
R11992 T14350 T14344 punct ",",Il12p40
R11993 T14351 T14344 conj Il6,Il12p40
R11994 T14352 T14353 punct (,C
R11995 T14353 T14344 appos C,Il12p40
R11996 T14354 T14353 punct ",",C
R11997 T14355 T14353 appos D,C
R11998 T14356 T14353 punct ),C
R11999 T14357 T14353 punct ",",C
R12000 T14358 T14343 pobj Gmcsf,of
R12001 T14359 T14360 punct (,E
R12002 T14360 T14358 appos E,Gmcsf
R12003 T14361 T14358 punct ",",Gmcsf
R12004 T14362 T14358 appos F,Gmcsf
R12005 T14363 T14358 punct ),Gmcsf
R12006 T14364 T14336 punct ",",subject
R12007 T14365 T14336 cc and,subject
R12008 T14366 T14336 conj Ifnb,subject
R12009 T14367 T14368 punct (,G
R12010 T14368 T14372 nmod G,mRNA
R12011 T14369 T14368 punct ",",G
R12012 T14370 T14368 appos H,G
R12013 T14371 T14372 punct ),mRNA
R12014 T14372 T14334 conj mRNA,extracted
R12015 T14373 T14334 punct .,extracted

sentences

Id Subject Object Predicate Lexical cue
T14258 0-156 Sentence denotes At 0, 1 and 2 hours, total RNA was extracted and subject to qRT-PCR to measure the expression of Il12p40 (A,B), Il6 (C,D), Gmcsf (E,F), and Ifnb (G,H) mRNA.
T86 0-156 Sentence denotes At 0, 1 and 2 hours, total RNA was extracted and subject to qRT-PCR to measure the expression of Il12p40 (A,B), Il6 (C,D), Gmcsf (E,F), and Ifnb (G,H) mRNA.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T14530 83-93 Transcription denotes expression true
T14531 83-93 Transcription denotes expression true
T14532 83-93 Transcription denotes expression true
T14533 83-93 Transcription denotes expression true
T14534 97-104 Protein denotes Il12p40
T14535 112-115 Protein denotes Il6
T14536 123-128 Protein denotes Gmcsf
T14537 140-144 Protein denotes Ifnb
R12159 T14534 T14533 themeOf Il12p40,expression
R12160 T14535 T14532 themeOf Il6,expression
R12161 T14536 T14531 themeOf Gmcsf,expression
R12162 T14537 T14530 themeOf Ifnb,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T14538 60-63 Protein denotes qRT

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T14248 83-93 Transcription denotes expression true
T14249 83-93 Transcription denotes expression true
T14250 83-93 Transcription denotes expression true
T14251 83-93 Transcription denotes expression true
T14252 97-104 Protein denotes Il12p40
T14253 112-115 Protein denotes Il6
T14254 123-128 Protein denotes Gmcsf
T14255 140-144 Protein denotes Ifnb
R11899 T14252 T14251 themeOf Il12p40,expression
R11900 T14253 T14250 themeOf Il6,expression
R11901 T14254 T14249 themeOf Gmcsf,expression
R11902 T14255 T14248 themeOf Ifnb,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14506 112-115 P05231 denotes Il6
T14507 123-128 P04141 denotes Gmcsf

test2

Id Subject Object Predicate Lexical cue Speculation
T14242 71-78 Regulation denotes measure true
T14243 83-93 Gene_expression denotes expression true
T14244 97-104 Protein denotes Il12p40 true
T14245 112-115 Protein denotes Il6 true
T14246 123-128 Protein denotes Gmcsf
T14247 140-144 Protein denotes Ifnb
R11894 T14243 T14242 themeOf expression,measure
R11895 T14244 T14243 themeOf Il12p40,expression
R11896 T14245 T14243 themeOf Il6,expression
R11897 T14246 T14243 themeOf Gmcsf,expression
R11898 T14247 T14243 themeOf Ifnb,expression