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PMC:3279418 / 1227-1399 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T583 0-6 JJ denotes Mutant
T584 7-11 NN denotes BMDC
T585 12-15 VB denotes had
T586 16-25 JJ denotes defective
T587 26-36 NN denotes activation
T588 37-39 IN denotes of
T589 40-45 NN denotes NF-κB
T590 46-55 NN denotes signaling
T591 55-56 -COMMA- denotes ,
T592 57-64 IN denotes whereas
T593 65-68 DT denotes the
T594 69-76 NN denotes MAPK1/3
T595 77-78 -LRB- denotes (
T596 78-84 NN denotes ERK1/2
T597 84-85 -RRB- denotes )
T598 86-89 CC denotes and
T599 90-105 NN denotes MAPK11/12/13/14
T600 106-107 -LRB- denotes (
T601 107-110 NN denotes p38
T602 111-114 NN denotes MAP
T603 115-121 NN denotes kinase
T604 122-130 NN denotes isoforms
T605 130-131 -RRB- denotes )
T606 132-135 CC denotes and
T607 136-140 NN denotes TBK1
T608 141-150 NN denotes signaling
T609 151-159 NN denotes pathways
T610 160-164 VB denotes were
T611 165-171 JJ denotes intact
R501 T584 T583 arg1Of BMDC,Mutant
R502 T584 T585 arg1Of BMDC,had
R503 T585 T592 arg1Of had,whereas
R504 T587 T585 arg2Of activation,had
R505 T587 T586 arg1Of activation,defective
R506 T587 T588 arg1Of activation,of
R507 T590 T588 arg2Of signaling,of
R508 T590 T589 arg1Of signaling,NF-κB
R509 T592 T591 arg1Of whereas,","
R510 T594 T593 arg1Of MAPK1/3,the
R511 T594 T595 arg1Of MAPK1/3,(
R512 T594 T598 arg1Of MAPK1/3,and
R513 T596 T595 arg2Of ERK1/2,(
R514 T597 T595 arg3Of ),(
R515 T598 T610 arg1Of and,were
R516 T598 T611 arg1Of and,intact
R517 T599 T600 arg1Of MAPK11/12/13/14,(
R518 T599 T606 arg1Of MAPK11/12/13/14,and
R519 T604 T600 arg2Of isoforms,(
R520 T604 T601 arg1Of isoforms,p38
R521 T604 T602 arg1Of isoforms,MAP
R522 T604 T603 arg1Of isoforms,kinase
R523 T605 T600 arg3Of ),(
R524 T606 T598 arg2Of and,and
R525 T609 T606 arg2Of pathways,and
R526 T609 T607 arg1Of pathways,TBK1
R527 T609 T608 arg1Of pathways,signaling
R528 T610 T592 arg2Of were,whereas
R529 T611 T610 arg2Of intact,were

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T309 0-6 JJ denotes Mutant
T310 7-11 NNP denotes BMDC
T311 12-15 VBD denotes had
T312 16-25 JJ denotes defective
T313 26-36 NN denotes activation
T314 37-39 IN denotes of
T315 40-45 JJ denotes NF-κB
T316 46-55 VBG denotes signaling
T317 55-56 , denotes ,
T318 57-64 IN denotes whereas
T319 65-68 DT denotes the
T320 69-76 NNP denotes MAPK1/3
T321 77-78 -LRB- denotes (
T322 78-84 NNP denotes ERK1/2
T323 84-85 -RRB- denotes )
T324 86-89 CC denotes and
T325 90-102 NNP denotes MAPK11/12/13
T326 102-103 NNP denotes /
T327 103-105 CD denotes 14
T328 106-107 -LRB- denotes (
T329 107-110 CD denotes p38
T330 111-114 NNP denotes MAP
T331 115-121 NN denotes kinase
T332 122-130 VBZ denotes isoforms
T333 130-131 -RRB- denotes )
T334 132-135 CC denotes and
T335 136-140 CD denotes TBK1
T336 141-150 VBG denotes signaling
T337 151-159 NNS denotes pathways
T338 160-164 VBD denotes were
T339 165-171 JJ denotes intact
T340 171-172 . denotes .
R225 T309 T310 compound Mutant,BMDC
R226 T310 T311 nsubj BMDC,had
R227 T311 T311 ROOT had,had
R228 T312 T313 amod defective,activation
R229 T313 T311 dobj activation,had
R230 T314 T313 prep of,activation
R231 T315 T316 amod NF-κB,signaling
R232 T316 T314 pobj signaling,of
R233 T317 T311 punct ",",had
R234 T318 T338 mark whereas,were
R235 T319 T320 det the,MAPK1/3
R236 T320 T338 nsubj MAPK1/3,were
R237 T321 T322 punct (,ERK1/2
R238 T322 T320 appos ERK1/2,MAPK1/3
R239 T323 T322 punct ),ERK1/2
R240 T324 T320 cc and,MAPK1/3
R241 T325 T326 compound MAPK11/12/13,/
R242 T326 T338 nsubj /,were
R243 T327 T326 nummod 14,/
R244 T328 T332 punct (,isoforms
R245 T329 T331 nummod p38,kinase
R246 T330 T331 compound MAP,kinase
R247 T331 T332 nsubj kinase,isoforms
R248 T332 T326 parataxis isoforms,/
R249 T333 T332 punct ),isoforms
R250 T334 T326 cc and,/
R251 T335 T337 nummod TBK1,pathways
R252 T336 T337 compound signaling,pathways
R253 T337 T326 conj pathways,/
R254 T338 T311 advcl were,had
R255 T339 T338 acomp intact,were
R256 T340 T311 punct .,had

GO-BP

Id Subject Object Predicate Lexical cue
T707 26-45 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB
T708 26-55 http://purl.obolibrary.org/obo/GO_1901224 denotes activation of NF-κB signaling
T709 40-55 http://purl.obolibrary.org/obo/GO_0038061 denotes NF-κB signaling
T710 46-55 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T711 141-150 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T712 78-82 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T713 107-110 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T714 136-140 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1
T715 141-159 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways

GO-MF

Id Subject Object Predicate Lexical cue
T724 78-82 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T725 107-110 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T726 136-140 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1

sentences

Id Subject Object Predicate Lexical cue
T115 0-172 Sentence denotes Mutant BMDC had defective activation of NF-κB signaling, whereas the MAPK1/3 (ERK1/2) and MAPK11/12/13/14 (p38 MAP kinase isoforms) and TBK1 signaling pathways were intact.
T10 0-172 Sentence denotes Mutant BMDC had defective activation of NF-κB signaling, whereas the MAPK1/3 (ERK1/2) and MAPK11/12/13/14 (p38 MAP kinase isoforms) and TBK1 signaling pathways were intact.

events-check-again

Id Subject Object Predicate Lexical cue
T831 90-96 Protein denotes MAPK11
T832 97-99 Protein denotes 12
T833 100-102 Protein denotes 13
T834 103-105 Protein denotes 14
T835 136-140 Protein denotes TBK1
T830 83-84 Protein denotes 2
T827 69-74 Protein denotes MAPK1
T828 75-76 Protein denotes 3
T829 78-82 Protein denotes ERK1
R713 T829 T827 equivalentTo ERK1,MAPK1
R714 T830 T828 equivalentTo 2,3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T888 40-45 Protein denotes NF-κB
T889 69-76 Protein denotes MAPK1/3
T890 78-82 Protein denotes ERK1
T891 107-130 Protein denotes p38 MAP kinase isoforms
T892 136-140 Protein denotes TBK1
T893 26-36 Positive_regulation denotes activation
R660 T888 T893 themeOf NF-κB,activation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T96 69-74 Protein denotes MAPK1
T97 75-76 Protein denotes 3
T98 78-82 Protein denotes ERK1
T99 83-84 Protein denotes 2
T100 90-96 Protein denotes MAPK11
T101 97-99 Protein denotes 12
T102 100-102 Protein denotes 13
T103 103-105 Protein denotes 14
T104 136-140 Protein denotes TBK1
R40 T98 T96 equivalentTo ERK1,MAPK1
R41 T99 T97 equivalentTo 2,3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T678 69-74 P28482 denotes MAPK1
T679 78-82 P27361 denotes ERK1
T680 90-96 Q15759 denotes MAPK11
T681 107-110 P53778 denotes p38
T682 107-110 Q16539 denotes p38
T683 107-110 Q15759 denotes p38
T684 107-110 O15264 denotes p38
T685 136-140 Q9UHD2 denotes TBK1

test2

Id Subject Object Predicate Lexical cue
T58 69-74 Protein denotes MAPK1
T59 75-76 Protein denotes 3
T60 78-82 Protein denotes ERK1
T61 83-84 Protein denotes 2
T62 90-96 Protein denotes MAPK11
T63 97-99 Protein denotes 12
T64 100-102 Protein denotes 13
T65 103-105 Protein denotes 14
T66 136-140 Protein denotes TBK1
R30 T60 T58 equivalentTo ERK1,MAPK1
R31 T60 T59 equivalentTo ERK1,3
R32 T61 T59 equivalentTo 2,3
R33 T61 T58 equivalentTo 2,MAPK1