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PMC:3279418 / 10394-10622 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4023 0-10 NN denotes Incubation
T4024 11-15 IN denotes with
T4025 16-19 NN denotes LPS
T4026 20-22 CC denotes or
T4027 23-27 NN denotes poly
T4028 28-29 NN denotes I
T4029 29-30 SYM denotes :
T4030 30-31 NN denotes C
T4031 32-40 VB denotes resulted
T4032 41-43 IN denotes in
T4033 44-53 NN denotes secretion
T4034 54-56 IN denotes of
T4035 57-60 NN denotes IL6
T4036 60-61 -COMMA- denotes ,
T4037 62-69 NN denotes IL12P70
T4038 69-70 -COMMA- denotes ,
T4039 71-74 CC denotes and
T4040 75-80 NN denotes GMCSF
T4041 81-85 IN denotes from
T4042 86-90 CC denotes both
T4043 91-93 NN denotes WT
T4044 94-97 CC denotes and
T4045 98-102 NN denotes cpdm
T4046 103-107 NN denotes BMDC
T4047 107-108 -COLON- denotes ;
T4048 109-116 RB denotes however
T4049 116-117 -COMMA- denotes ,
T4050 118-122 NN denotes BMDC
T4051 123-127 IN denotes from
T4052 128-132 NN denotes cpdm
T4053 133-137 NN denotes mice
T4054 138-146 VB denotes produced
T4055 147-160 RB denotes significantly
T4056 161-165 JJ denotes less
T4057 166-168 IN denotes of
T4058 169-172 DT denotes all
T4059 173-178 CD denotes three
T4060 179-188 NN denotes cytokines
T4061 189-197 VB denotes compared
T4062 198-202 IN denotes with
T4063 203-205 JJ denotes WT
T4064 206-210 NN denotes BMDC
T4065 211-212 -LRB- denotes (
T4066 212-216 NNP denotes Fig.
T4067 217-221 NN denotes 3A–C
T4068 221-222 -COMMA- denotes ,
T4069 223-226 NN denotes E–F
T4070 226-227 -RRB- denotes )
R3331 T4023 T4031 arg1Of Incubation,resulted
R3332 T4025 T4026 arg1Of LPS,or
R3333 T4026 T4024 arg2Of or,with
R3334 T4030 T4026 arg2Of C,or
R3335 T4030 T4027 arg1Of C,poly
R3336 T4030 T4028 arg1Of C,I
R3337 T4030 T4029 arg1Of C,:
R3338 T4031 T4032 arg1Of resulted,in
R3339 T4031 T4047 arg1Of resulted,;
R3340 T4033 T4032 arg2Of secretion,in
R3341 T4033 T4034 arg1Of secretion,of
R3342 T4033 T4041 arg1Of secretion,from
R3343 T4035 T4036 arg1Of IL6,","
R3344 T4036 T4039 arg1Of ",",and
R3345 T4037 T4036 arg2Of IL12P70,","
R3346 T4039 T4034 arg2Of and,of
R3347 T4039 T4038 arg1Of and,","
R3348 T4040 T4039 arg2Of GMCSF,and
R3349 T4043 T4044 arg1Of WT,and
R3350 T4044 T4042 arg1Of and,both
R3351 T4045 T4044 arg2Of cpdm,and
R3352 T4046 T4041 arg2Of BMDC,from
R3353 T4046 T4043 arg1Of BMDC,WT
R3354 T4046 T4045 arg1Of BMDC,cpdm
R3355 T4050 T4051 arg1Of BMDC,from
R3356 T4050 T4054 arg1Of BMDC,produced
R3357 T4053 T4051 arg2Of mice,from
R3358 T4053 T4052 arg1Of mice,cpdm
R3359 T4054 T4047 arg2Of produced,;
R3360 T4054 T4048 arg1Of produced,however
R3361 T4054 T4049 arg1Of produced,","
R3362 T4054 T4055 arg1Of produced,significantly
R3363 T4054 T4061 arg1Of produced,compared
R3364 T4056 T4054 arg2Of less,produced
R3365 T4056 T4057 arg1Of less,of
R3366 T4060 T4057 arg2Of cytokines,of
R3367 T4060 T4058 arg1Of cytokines,all
R3368 T4060 T4059 arg1Of cytokines,three
R3369 T4062 T4061 arg2Of with,compared
R3370 T4064 T4062 arg2Of BMDC,with
R3371 T4064 T4063 arg1Of BMDC,WT
R3372 T4064 T4065 arg1Of BMDC,(
R3373 T4067 T4065 arg2Of 3A–C,(
R3374 T4067 T4066 arg1Of 3A–C,Fig.
R3375 T4067 T4068 arg1Of 3A–C,","
R3376 T4069 T4068 arg2Of E–F,","
R3377 T4070 T4065 arg3Of ),(
R3330 T4023 T4024 arg1Of Incubation,with

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T4194 169-188 Anaphor denotes all three cytokines
T4195 57-60 Antecedent denotes IL6
T4196 75-80 Antecedent denotes GMCSF
R3501 T4194 T4195 boundBy all three cytokines,IL6
R3502 T4194 T4196 boundBy all three cytokines,GMCSF

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3837 0-10 NNP denotes Incubation
T3838 11-15 IN denotes with
T3839 16-19 NNP denotes LPS
T3840 20-22 CC denotes or
T3841 23-27 RB denotes poly
T3842 28-29 PRP denotes I
T3843 29-30 : denotes :
T3844 30-31 NNP denotes C
T3845 32-40 VBD denotes resulted
T3846 41-43 IN denotes in
T3847 44-53 NN denotes secretion
T3848 54-56 IN denotes of
T3849 57-60 NNP denotes IL6
T3850 60-61 , denotes ,
T3851 62-69 NNP denotes IL12P70
T3852 69-70 , denotes ,
T3853 71-74 CC denotes and
T3854 75-80 NNP denotes GMCSF
T3855 81-85 IN denotes from
T3856 86-90 DT denotes both
T3857 91-93 NNP denotes WT
T3858 94-97 CC denotes and
T3859 98-102 VB denotes cpdm
T3860 103-107 NNP denotes BMDC
T3861 107-108 : denotes ;
T3862 109-116 RB denotes however
T3863 116-117 , denotes ,
T3864 118-122 NNP denotes BMDC
T3865 123-127 IN denotes from
T3866 128-132 NN denotes cpdm
T3867 133-137 NNS denotes mice
T3868 138-146 VBD denotes produced
T3869 147-160 RB denotes significantly
T3870 161-165 JJR denotes less
T3871 166-168 IN denotes of
T3872 169-172 DT denotes all
T3873 173-178 CD denotes three
T3874 179-188 NNS denotes cytokines
T3875 189-197 VBN denotes compared
T3876 198-202 IN denotes with
T3877 203-205 NNP denotes WT
T3878 206-210 NNP denotes BMDC
T3879 211-212 -LRB- denotes (
T3880 212-216 NNP denotes Fig.
T3881 217-219 NNP denotes 3A
T3882 220-221 NNP denotes C
T3883 221-222 , denotes ,
T3884 223-224 NNP denotes E
T3885 225-226 NN denotes F
T3886 226-227 -RRB- denotes )
T3887 227-228 . denotes .
R3146 T3839 T3838 pobj LPS,with
R3148 T3841 T3845 advmod poly,resulted
R3149 T3842 T3845 nsubj I,resulted
R3150 T3843 T3845 punct :,resulted
R3151 T3844 T3845 nsubj C,resulted
R3153 T3846 T3845 prep in,resulted
R3154 T3847 T3846 pobj secretion,in
R3155 T3848 T3847 prep of,secretion
R3156 T3849 T3848 pobj IL6,of
R3157 T3850 T3849 punct ",",IL6
R3158 T3851 T3849 conj IL12P70,IL6
R3159 T3852 T3851 punct ",",IL12P70
R3160 T3853 T3851 cc and,IL12P70
R3161 T3854 T3851 conj GMCSF,IL12P70
R3162 T3855 T3845 prep from,resulted
R3163 T3856 T3857 preconj both,WT
R3164 T3857 T3855 pobj WT,from
R3165 T3858 T3857 cc and,WT
R3166 T3859 T3860 compound cpdm,BMDC
R3167 T3860 T3857 conj BMDC,WT
R3168 T3861 T3868 punct ;,produced
R3169 T3862 T3868 advmod however,produced
R3170 T3863 T3868 punct ",",produced
R3171 T3864 T3868 nsubj BMDC,produced
R3172 T3865 T3864 prep from,BMDC
R3173 T3866 T3867 compound cpdm,mice
R3174 T3867 T3865 pobj mice,from
R3175 T3868 T3868 ROOT produced,produced
R3176 T3869 T3870 advmod significantly,less
R3177 T3870 T3868 dobj less,produced
R3178 T3871 T3870 prep of,less
R3179 T3872 T3874 det all,cytokines
R3180 T3873 T3874 nummod three,cytokines
R3181 T3874 T3871 pobj cytokines,of
R3182 T3875 T3870 prep compared,less
R3183 T3876 T3875 prep with,compared
R3184 T3877 T3878 compound WT,BMDC
R3185 T3878 T3876 pobj BMDC,with
R3186 T3879 T3878 punct (,BMDC
R3187 T3880 T3881 compound Fig.,3A
R3188 T3881 T3878 appos 3A,BMDC
R3189 T3882 T3878 conj C,BMDC
R3190 T3883 T3882 punct ",",C
R3191 T3884 T3885 compound E,F
R3192 T3885 T3882 appos F,C
R3193 T3886 T3882 punct ),C
R3194 T3887 T3868 punct .,produced

GO-BP

Id Subject Object Predicate Lexical cue
T4209 44-53 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

sentences

Id Subject Object Predicate Lexical cue
T3824 0-228 Sentence denotes Incubation with LPS or poly I:C resulted in secretion of IL6, IL12P70, and GMCSF from both WT and cpdm BMDC; however, BMDC from cpdm mice produced significantly less of all three cytokines compared with WT BMDC (Fig. 3A–C, E–F).
T73 0-228 Sentence denotes Incubation with LPS or poly I:C resulted in secretion of IL6, IL12P70, and GMCSF from both WT and cpdm BMDC; however, BMDC from cpdm mice produced significantly less of all three cytokines compared with WT BMDC (Fig. 3A–C, E–F).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T4247 32-40 Positive_regulation denotes resulted
T4248 32-40 Positive_regulation denotes resulted
T4249 44-53 Gene_expression denotes secretion
T4250 44-53 Gene_expression denotes secretion
T4251 57-60 Protein denotes IL6
T4252 75-80 Protein denotes GMCSF
T4253 138-146 Gene_expression denotes produced
T4254 138-146 Gene_expression denotes produced
T4255 161-165 Positive_regulation denotes less true
T4256 161-165 Positive_regulation denotes less true
R3521 T4249 T4248 themeOf secretion,resulted
R3522 T4250 T4247 themeOf secretion,resulted
R3523 T4251 T4250 themeOf IL6,secretion
R3524 T4251 T4253 themeOf IL6,produced
R3525 T4252 T4249 themeOf GMCSF,secretion
R3526 T4252 T4254 themeOf GMCSF,produced
R3527 T4253 T4255 themeOf produced,less
R3528 T4254 T4256 themeOf produced,less

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4265 57-60 Protein denotes IL6
T4266 62-69 Protein denotes IL12P70
T4267 75-80 Protein denotes GMCSF
T4268 203-210 Protein denotes WT BMDC
T4269 212-215 Protein denotes Fig
T4270 44-53 Localization denotes secretion
T4271 44-53 Localization denotes secretion
T4272 44-53 Localization denotes secretion
T4273 138-146 Gene_expression denotes produced
T4274 138-146 Gene_expression denotes produced
T4275 32-40 Positive_regulation denotes resulted
T4276 32-40 Positive_regulation denotes resulted
T4277 32-40 Positive_regulation denotes resulted
R3530 T4265 T4270 themeOf IL6,secretion
R3531 T4266 T4271 themeOf IL12P70,secretion
R3532 T4267 T4272 themeOf GMCSF,secretion
R3533 T4268 T4273 themeOf WT BMDC,produced
R3534 T4269 T4274 themeOf Fig,produced
R3535 T4270 T4275 themeOf secretion,resulted
R3536 T4271 T4276 themeOf secretion,resulted
R3537 T4272 T4277 themeOf secretion,resulted

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T3805 32-40 Positive_regulation denotes resulted
T3806 32-40 Positive_regulation denotes resulted
T3807 44-53 Gene_expression denotes secretion
T3808 44-53 Gene_expression denotes secretion
T3809 57-60 Protein denotes IL6
T3810 75-80 Protein denotes GMCSF
T3811 138-146 Gene_expression denotes produced
T3812 138-146 Gene_expression denotes produced
T3813 161-165 Positive_regulation denotes less true
T3814 161-165 Positive_regulation denotes less true
R3126 T3807 T3806 themeOf secretion,resulted
R3127 T3808 T3805 themeOf secretion,resulted
R3128 T3809 T3808 themeOf IL6,secretion
R3129 T3809 T3811 themeOf IL6,produced
R3130 T3810 T3807 themeOf GMCSF,secretion
R3131 T3810 T3812 themeOf GMCSF,produced
R3132 T3811 T3813 themeOf produced,less
R3133 T3812 T3814 themeOf produced,less

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4197 57-60 P05231 denotes IL6
T4198 75-80 P04141 denotes GMCSF

test2

Id Subject Object Predicate Lexical cue
T3792 32-40 Positive_regulation denotes resulted
T3793 44-53 Gene_expression denotes secretion
T3794 57-60 Protein denotes IL6
T3795 75-80 Protein denotes GMCSF
R3122 T3793 T3792 themeOf secretion,resulted
R3123 T3794 T3793 themeOf IL6,secretion
R3124 T3795 T3793 themeOf GMCSF,secretion