> top > docs > PMC:3279418 > spans > 1039-1226 > annotations

PMC:3279418 / 1039-1226 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T554 4-13 NN denotes molecules
T555 14-18 NN denotes CD40
T556 18-19 -COMMA- denotes ,
T557 20-24 NN denotes CD80
T558 24-25 -COMMA- denotes ,
T559 26-29 CC denotes and
T560 30-34 NN denotes CD86
T561 36-43 RB denotes However
T562 43-44 -COMMA- denotes ,
T563 45-55 VB denotes stimulated
T564 56-73 JJ denotes SHARPIN-deficient
T565 74-78 NN denotes BMDC
T566 79-82 VB denotes had
T567 83-90 VB denotes reduced
T568 91-104 NN denotes transcription
T569 105-108 CC denotes and
T570 109-118 NN denotes secretion
T571 119-121 IN denotes of
T572 122-138 JJ denotes pro-inflammatory
T573 139-148 NN denotes mediators
T574 149-152 NN denotes IL6
T575 152-153 -COMMA- denotes ,
T576 154-161 NN denotes IL12P70
T577 161-162 -COMMA- denotes ,
T578 163-168 NN denotes GMCSF
T579 168-169 -COMMA- denotes ,
T580 170-173 CC denotes and
T581 174-180 JJ denotes nitric
T582 181-186 NN denotes oxide
R471 T555 T556 arg1Of CD40,","
R472 T556 T559 arg1Of ",",and
R473 T557 T556 arg2Of CD80,","
R476 T559 T554 arg1Of and,molecules
R477 T559 T558 arg1Of and,","
R478 T560 T559 arg2Of CD86,and
R479 T565 T563 arg1Of BMDC,stimulated
R480 T565 T564 arg1Of BMDC,SHARPIN-deficient
R481 T565 T566 arg1Of BMDC,had
R482 T565 T567 arg1Of BMDC,reduced
R483 T567 T561 arg1Of reduced,However
R484 T567 T562 arg1Of reduced,","
R485 T567 T566 arg2Of reduced,had
R486 T568 T569 arg1Of transcription,and
R487 T569 T567 arg2Of and,reduced
R488 T569 T571 arg1Of and,of
R489 T570 T569 arg2Of secretion,and
R490 T573 T572 arg1Of mediators,pro-inflammatory
R491 T574 T575 arg1Of IL6,","
R492 T575 T577 arg1Of ",",","
R493 T576 T575 arg2Of IL12P70,","
R494 T577 T580 arg1Of ",",and
R495 T578 T577 arg2Of GMCSF,","
R496 T580 T571 arg2Of and,of
R497 T580 T573 arg1Of and,mediators
R498 T580 T579 arg1Of and,","
R499 T582 T580 arg2Of oxide,and
R500 T582 T581 arg1Of oxide,nitric

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T278 4-13 NNS denotes molecules
T279 14-18 NNP denotes CD40
T280 18-19 , denotes ,
T281 20-24 NNP denotes CD80
T282 24-25 , denotes ,
T283 26-29 CC denotes and
T284 30-34 NNP denotes CD86
T285 34-35 . denotes .
T286 36-43 RB denotes However
T287 43-44 , denotes ,
T288 45-55 VBD denotes stimulated
T289 56-73 JJ denotes SHARPIN-deficient
T290 74-78 NNP denotes BMDC
T291 79-82 VBD denotes had
T292 83-90 VBN denotes reduced
T293 91-104 NN denotes transcription
T294 105-108 CC denotes and
T295 109-118 NN denotes secretion
T296 119-121 IN denotes of
T297 122-138 JJ denotes pro-inflammatory
T298 139-148 NNS denotes mediators
T299 149-152 NNP denotes IL6
T300 152-153 , denotes ,
T301 154-161 NNP denotes IL12P70
T302 161-162 , denotes ,
T303 163-168 NNP denotes GMCSF
T304 168-169 , denotes ,
T305 170-173 CC denotes and
T306 174-180 JJ denotes nitric
T307 181-186 NN denotes oxide
T308 186-187 . denotes .
R196 T280 T279 punct ",",CD40
R197 T281 T279 conj CD80,CD40
R198 T282 T281 punct ",",CD80
R199 T283 T281 cc and,CD80
R200 T284 T281 conj CD86,CD80
R202 T286 T288 advmod However,stimulated
R203 T287 T288 punct ",",stimulated
R204 T288 T288 ROOT stimulated,stimulated
R205 T289 T290 compound SHARPIN-deficient,BMDC
R206 T290 T292 nsubj BMDC,reduced
R207 T291 T292 aux had,reduced
R208 T292 T288 ccomp reduced,stimulated
R209 T293 T292 dobj transcription,reduced
R210 T294 T293 cc and,transcription
R211 T295 T293 conj secretion,transcription
R212 T296 T293 prep of,transcription
R213 T297 T298 amod pro-inflammatory,mediators
R214 T298 T296 pobj mediators,of
R215 T299 T292 dobj IL6,reduced
R216 T300 T299 punct ",",IL6
R217 T301 T299 conj IL12P70,IL6
R218 T302 T301 punct ",",IL12P70
R219 T303 T301 conj GMCSF,IL12P70
R220 T304 T303 punct ",",GMCSF
R221 T305 T303 cc and,GMCSF
R222 T306 T307 amod nitric,oxide
R223 T307 T303 conj oxide,GMCSF
R224 T308 T292 punct .,reduced

GO-BP

Id Subject Object Predicate Lexical cue
T704 109-118 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T706 91-104 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T114 36-187 Sentence denotes However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide.
T9 36-187 Sentence denotes However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide.

events-check-again

Id Subject Object Predicate Lexical cue
T812 14-18 Protein denotes CD40
T813 20-24 Protein denotes CD80
T814 30-34 Protein denotes CD86
T815 56-63 Protein denotes SHARPIN
T816 64-73 Negative_regulation denotes deficient
T817 83-90 Negative_regulation denotes reduced
T818 83-90 Negative_regulation denotes reduced
T819 83-90 Negative_regulation denotes reduced
T820 83-90 Negative_regulation denotes reduced
T821 91-104 Transcription denotes transcription
T822 91-104 Transcription denotes transcription
T823 109-118 Gene_expression denotes secretion
T824 109-118 Gene_expression denotes secretion
T825 149-152 Protein denotes IL6
T826 163-168 Protein denotes GMCSF
R711 T826 T822 themeOf GMCSF,transcription
R712 T826 T823 themeOf GMCSF,secretion
R700 T815 T816 themeOf SHARPIN,deficient
R701 T816 T818 causeOf deficient,reduced
R702 T816 T820 causeOf deficient,reduced
R703 T816 T819 causeOf deficient,reduced
R704 T816 T817 causeOf deficient,reduced
R705 T821 T818 themeOf transcription,reduced
R706 T822 T820 themeOf transcription,reduced
R707 T823 T817 themeOf secretion,reduced
R708 T824 T819 themeOf secretion,reduced
R709 T825 T821 themeOf IL6,transcription
R710 T825 T824 themeOf IL6,secretion

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T865 14-18 Protein denotes CD40
T866 20-24 Protein denotes CD80
T867 30-34 Protein denotes CD86
T874 56-63 Protein denotes SHARPIN
T875 149-152 Protein denotes IL6
T876 154-161 Protein denotes IL12P70
T877 163-168 Protein denotes GMCSF
T878 64-73 Negative_regulation denotes deficient
T879 91-104 Transcription denotes transcription
T880 91-104 Transcription denotes transcription
T881 91-104 Transcription denotes transcription
T882 109-118 Localization denotes secretion
T883 109-118 Localization denotes secretion
T884 109-118 Localization denotes secretion
T885 83-90 Negative_regulation denotes reduced
T886 83-90 Negative_regulation denotes reduced
T887 83-90 Negative_regulation denotes reduced
R650 T874 T878 themeOf SHARPIN,deficient
R651 T875 T879 themeOf IL6,transcription
R652 T875 T882 themeOf IL6,secretion
R653 T876 T880 themeOf IL12P70,transcription
R654 T876 T883 themeOf IL12P70,secretion
R655 T877 T881 themeOf GMCSF,transcription
R656 T877 T884 themeOf GMCSF,secretion
R657 T879 T885 themeOf transcription,reduced
R658 T880 T886 themeOf transcription,reduced
R659 T881 T887 themeOf transcription,reduced

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T93 109-118 Gene_expression denotes secretion
T94 149-152 Protein denotes IL6
T95 163-168 Protein denotes GMCSF
T81 14-18 Protein denotes CD40
T82 20-24 Protein denotes CD80
T83 30-34 Protein denotes CD86
T84 56-63 Protein denotes SHARPIN
T85 64-73 Negative_regulation denotes deficient
T86 83-90 Negative_regulation denotes reduced
T87 83-90 Negative_regulation denotes reduced
T88 83-90 Negative_regulation denotes reduced
T89 83-90 Negative_regulation denotes reduced
T90 91-104 Transcription denotes transcription
T91 91-104 Transcription denotes transcription
T92 109-118 Gene_expression denotes secretion
R36 T94 T90 themeOf IL6,transcription
R37 T94 T93 themeOf IL6,secretion
R38 T95 T91 themeOf GMCSF,transcription
R678 T85 T87 causeOf deficient,reduced
R679 T85 T89 causeOf deficient,reduced
R680 T85 T88 causeOf deficient,reduced
R681 T85 T86 causeOf deficient,reduced
R682 T90 T87 themeOf transcription,reduced
R683 T91 T89 themeOf transcription,reduced
R684 T92 T86 themeOf secretion,reduced
R35 T93 T88 themeOf secretion,reduced
R677 T84 T85 themeOf SHARPIN,deficient
R39 T95 T92 themeOf GMCSF,secretion

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T672 14-18 P25942 denotes CD40
T673 20-24 P33681 denotes CD80
T674 30-34 P42081 denotes CD86
T675 56-63 Q9H0F6 denotes SHARPIN
T676 149-152 P05231 denotes IL6
T677 163-168 P04141 denotes GMCSF

test2

Id Subject Object Predicate Lexical cue
T50 20-24 Protein denotes CD80
T51 30-34 Protein denotes CD86
T52 56-63 Protein denotes SHARPIN
T53 64-73 Negative_regulation denotes deficient
T54 83-90 Negative_regulation denotes reduced
T55 91-104 Transcription denotes transcription
T56 149-152 Protein denotes IL6
T57 163-168 Protein denotes GMCSF
T49 14-18 Protein denotes CD40
R25 T52 T53 themeOf SHARPIN,deficient
R26 T53 T54 causeOf deficient,reduced
R27 T55 T54 themeOf transcription,reduced
R28 T56 T55 themeOf IL6,transcription
R29 T57 T55 themeOf GMCSF,transcription