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PMC:3245220 / 95-493 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T443 39-75 P09603 denotes Macrophage colony-stimulating factor
T444 50-75 P04141 denotes colony-stimulating factor
T445 77-82 P09603 denotes M-CSF
T446 79-82 P04141 denotes CSF
T447 238-243 P09603 denotes M-CSF
T448 240-243 P04141 denotes CSF

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T484 39-75 Protein denotes Macrophage colony-stimulating factor
T485 77-82 Protein denotes M-CSF
T486 238-243 Protein denotes M-CSF
R414 T485 T484 equivalentTo M-CSF,Macrophage colony-stimulating factor

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T734 6-7 Entity denotes C
T738 39-75 Protein denotes Macrophage colony-stimulating factor
T739 77-82 Protein denotes M-CSF
T741 191-196 Protein denotes NF-κB
T742 238-243 Protein denotes M-CSF
T743 338-343 Protein denotes NF-κB
T744 360-370 Positive_regulation denotes activation
T740 168-189 Protein denotes Nuclear Factor-kappaB
R524 T743 T744 themeOf NF-κB,activation

events-check-again

Id Subject Object Predicate Lexical cue
T701 39-75 Protein denotes Macrophage colony-stimulating factor
T702 77-82 Protein denotes M-CSF
T703 238-243 Protein denotes M-CSF
R500 T702 T701 equivalentTo M-CSF,Macrophage colony-stimulating factor

GO-BP

Id Subject Object Predicate Lexical cue
T511 147-160 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T512 344-359 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional
T18591 147-359 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription factor Nuclear Factor-kappaB (NF-κB) is a key regulator of genes involved in M-CSF-induced mononuclear phagocyte survival and this study focused at identifying the mechanism of NF-κB transcriptional

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T267 6-7 NN denotes C
T268 39-49 NN denotes Macrophage
T269 50-68 JJ denotes colony-stimulating
T270 69-75 NN denotes factor
T271 76-77 -LRB- denotes (
T272 77-82 NN denotes M-CSF
T273 82-83 -RRB- denotes )
T274 84-92 VB denotes promotes
T275 93-104 JJ denotes mononuclear
T276 105-114 NN denotes phagocyte
T277 115-123 NN denotes survival
T278 124-127 CC denotes and
T279 128-141 NN denotes proliferation
T280 143-146 DT denotes The
T281 147-160 NN denotes transcription
T282 161-167 NN denotes factor
T283 168-175 JJ denotes Nuclear
T284 176-189 NN denotes Factor-kappaB
T285 190-191 -LRB- denotes (
T286 191-196 NN denotes NF-κB
T287 196-197 -RRB- denotes )
T288 198-200 VB denotes is
T289 201-202 DT denotes a
T290 203-206 JJ denotes key
T291 207-216 NN denotes regulator
T292 217-219 IN denotes of
T293 220-225 NN denotes genes
T294 226-234 VB denotes involved
T295 235-237 IN denotes in
T296 238-251 JJ denotes M-CSF-induced
T297 252-263 JJ denotes mononuclear
T298 264-273 NN denotes phagocyte
T299 274-282 NN denotes survival
T300 283-286 CC denotes and
T301 287-291 DT denotes this
T302 292-297 NN denotes study
T303 298-305 VB denotes focused
T304 306-308 IN denotes at
T305 309-320 VB denotes identifying
T306 321-324 DT denotes the
T307 325-334 NN denotes mechanism
T308 335-337 IN denotes of
T309 338-343 NN denotes NF-κB
T310 344-359 JJ denotes transcriptional
T311 360-370 NN denotes activation
T312 372-376 RB denotes Here
T313 376-377 -COMMA- denotes ,
T314 378-380 PRP denotes we
T315 381-392 VB denotes demonstrate
T316 393-397 IN denotes that
T15741 147-359 JJ denotes transcription factor Nuclear Factor-kappaB (NF-κB) is a key regulator of genes involved in M-CSF-induced mononuclear phagocyte survival and this study focused at identifying the mechanism of NF-κB transcriptional
R236 T270 T268 arg1Of factor,Macrophage
R237 T270 T269 arg1Of factor,colony-stimulating
R238 T270 T271 arg1Of factor,(
R239 T270 T274 arg1Of factor,promotes
R240 T272 T271 arg2Of M-CSF,(
R241 T273 T271 arg3Of ),(
R242 T277 T278 arg1Of survival,and
R243 T278 T274 arg2Of and,promotes
R244 T278 T275 arg1Of and,mononuclear
R245 T278 T276 arg1Of and,phagocyte
R246 T279 T278 arg2Of proliferation,and
R247 T284 T280 arg1Of Factor-kappaB,The
R248 T284 T281 arg1Of Factor-kappaB,transcription
R249 T284 T282 arg1Of Factor-kappaB,factor
R250 T284 T283 arg1Of Factor-kappaB,Nuclear
R251 T284 T285 arg1Of Factor-kappaB,(
R252 T284 T288 arg1Of Factor-kappaB,is
R253 T286 T285 arg2Of NF-κB,(
R254 T287 T285 arg3Of ),(
R255 T288 T300 arg1Of is,and
R256 T291 T288 arg2Of regulator,is
R257 T291 T289 arg1Of regulator,a
R258 T291 T290 arg1Of regulator,key
R259 T291 T292 arg1Of regulator,of
R260 T293 T292 arg2Of genes,of
R261 T293 T294 arg2Of genes,involved
R262 T294 T295 arg1Of involved,in
R263 T299 T295 arg2Of survival,in
R264 T299 T296 arg1Of survival,M-CSF-induced
R265 T299 T297 arg1Of survival,mononuclear
R266 T299 T298 arg1Of survival,phagocyte
R267 T302 T301 arg1Of study,this
R268 T302 T303 arg1Of study,focused
R269 T303 T300 arg2Of focused,and
R270 T303 T304 arg1Of focused,at
R271 T305 T304 arg2Of identifying,at
R272 T307 T305 arg2Of mechanism,identifying
R273 T307 T306 arg1Of mechanism,the
R274 T307 T308 arg1Of mechanism,of
R275 T311 T308 arg2Of activation,of
R276 T311 T309 arg1Of activation,NF-κB
R277 T311 T310 arg1Of activation,transcriptional
R278 T314 T315 arg1Of we,demonstrate
R279 T315 T312 arg1Of demonstrate,Here
R280 T315 T313 arg1Of demonstrate,","

sentences

Id Subject Object Predicate Lexical cue
T51 39-142 Sentence denotes Macrophage colony-stimulating factor (M-CSF) promotes mononuclear phagocyte survival and proliferation.
T52 143-371 Sentence denotes The transcription factor Nuclear Factor-kappaB (NF-κB) is a key regulator of genes involved in M-CSF-induced mononuclear phagocyte survival and this study focused at identifying the mechanism of NF-κB transcriptional activation.
T2 30-38 Sentence denotes Abstract
T3 39-142 Sentence denotes Macrophage colony-stimulating factor (M-CSF) promotes mononuclear phagocyte survival and proliferation.
T4 143-371 Sentence denotes The transcription factor Nuclear Factor-kappaB (NF-κB) is a key regulator of genes involved in M-CSF-induced mononuclear phagocyte survival and this study focused at identifying the mechanism of NF-κB transcriptional activation.

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T72 6-7 NNP denotes C
T73 39-49 NNP denotes Macrophage
T74 50-68 JJ denotes colony-stimulating
T75 69-75 NN denotes factor
T76 76-77 -LRB- denotes (
T77 77-82 NNP denotes M-CSF
T78 82-83 -RRB- denotes )
T79 84-92 VBZ denotes promotes
T80 93-104 JJ denotes mononuclear
T81 105-114 JJ denotes phagocyte
T82 115-123 NN denotes survival
T83 124-127 CC denotes and
T84 128-141 NN denotes proliferation
T85 141-142 . denotes .
T86 143-146 DT denotes The
T87 147-160 NN denotes transcription
T88 161-167 NN denotes factor
T89 168-175 NNP denotes Nuclear
T90 176-189 NNP denotes Factor-kappaB
T91 190-191 -LRB- denotes (
T92 191-196 NNP denotes NF-κB
T93 196-197 -RRB- denotes )
T94 198-200 VBZ denotes is
T95 201-202 DT denotes a
T96 203-206 JJ denotes key
T97 207-216 NN denotes regulator
T98 217-219 IN denotes of
T99 220-225 NNS denotes genes
T100 226-234 VBN denotes involved
T101 235-237 IN denotes in
T102 238-251 JJ denotes M-CSF-induced
T103 252-263 NN denotes mononuclear
T104 264-273 NN denotes phagocyte
T105 274-282 NN denotes survival
T106 283-286 CC denotes and
T107 287-291 DT denotes this
T108 292-297 NN denotes study
T109 298-305 VBD denotes focused
T110 306-308 IN denotes at
T111 309-320 VBG denotes identifying
T112 321-324 DT denotes the
T113 325-334 NN denotes mechanism
T114 335-337 IN denotes of
T115 338-343 JJ denotes NF-κB
T116 344-359 JJ denotes transcriptional
T117 360-370 NN denotes activation
T118 370-371 . denotes .
T119 372-376 RB denotes Here
T120 376-377 , denotes ,
T121 378-380 PRP denotes we
T122 381-392 VBP denotes demonstrate
T123 393-397 IN denotes that
T14520 147-359 JJ denotes transcription factor Nuclear Factor-kappaB (NF-κB) is a key regulator of genes involved in M-CSF-induced mononuclear phagocyte survival and this study focused at identifying the mechanism of NF-κB transcriptional
R80 T112 T113 det the,mechanism
R81 T113 T111 dobj mechanism,identifying
R82 T114 T113 prep of,mechanism
R83 T115 T117 amod NF-κB,activation
R84 T116 T117 amod transcriptional,activation
R85 T117 T114 pobj activation,of
R40 T72 T73 compound C,Macrophage
R41 T73 T75 nmod Macrophage,factor
R42 T74 T75 amod colony-stimulating,factor
R44 T76 T75 punct (,factor
R45 T77 T75 appos M-CSF,factor
R46 T78 T75 punct ),factor
R47 T79 T79 ROOT promotes,promotes
R48 T80 T82 amod mononuclear,survival
R49 T81 T82 amod phagocyte,survival
R50 T82 T79 dobj survival,promotes
R51 T83 T82 cc and,survival
R52 T84 T82 conj proliferation,survival
R53 T85 T79 punct .,promotes
R54 T86 T88 det The,factor
R55 T87 T88 compound transcription,factor
R56 T88 T94 nsubj factor,is
R57 T89 T90 compound Nuclear,Factor-kappaB
R58 T90 T88 appos Factor-kappaB,factor
R59 T91 T92 punct (,NF-κB
R60 T92 T90 appos NF-κB,Factor-kappaB
R61 T93 T90 punct ),Factor-kappaB
R62 T94 T94 ROOT is,is
R63 T95 T97 det a,regulator
R64 T96 T97 amod key,regulator
R65 T97 T94 attr regulator,is
R66 T98 T97 prep of,regulator
R67 T99 T98 pobj genes,of
R68 T100 T99 acl involved,genes
R69 T101 T100 prep in,involved
R70 T102 T105 amod M-CSF-induced,survival
R71 T103 T105 compound mononuclear,survival
R72 T104 T105 compound phagocyte,survival
R73 T105 T101 pobj survival,in
R74 T106 T94 cc and,is
R75 T107 T108 det this,study
R76 T108 T109 nsubj study,focused
R77 T109 T94 conj focused,is
R78 T110 T109 prep at,focused
R79 T111 T110 pcomp identifying,at
R86 T118 T109 punct .,focused
R87 T119 T122 advmod Here,demonstrate
R88 T120 T122 punct ",",demonstrate
R89 T121 T122 nsubj we,demonstrate
R90 T122 T122 ROOT demonstrate,demonstrate

test2

Id Subject Object Predicate Lexical cue
T27 39-75 Protein denotes Macrophage colony-stimulating factor
T28 77-82 Protein denotes M-CSF
T29 238-243 Protein denotes M-CSF
R17 T28 T27 equivalentTo M-CSF,Macrophage colony-stimulating factor