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PMC:3245220 / 46800-47353 JSONTXT

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bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T21930 250-261 Protein denotes BCA protein

GO-CC

Id Subject Object Predicate Lexical cue
T21928 68-72 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T21929 401-410 http://purl.obolibrary.org/obo/GO_0016020 denotes membranes

GO-MF

Id Subject Object Predicate Lexical cue
T21927 288-290 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

GO-BP

Id Subject Object Predicate Lexical cue
T21925 73-78 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis
T21926 288-290 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21830 0-7 NNP denotes Western
T21831 8-12 NNP denotes Blot
T21832 13-21 NN denotes Analysis
T21833 22-27 NN denotes Cells
T21834 28-32 VB denotes were
T21835 33-39 VB denotes washed
T21836 40-44 IN denotes with
T21837 45-48 NNP denotes PBS
T21838 49-52 CC denotes and
T21839 53-64 VB denotes resuspended
T21840 65-67 IN denotes in
T21841 68-72 NN denotes cell
T21842 73-78 NN denotes lysis
T21843 79-86 NN denotes buffer.
T21844 87-88 -LRB- denotes (
T21845 88-92 NNP denotes Cell
T21846 93-102 NNP denotes Signaling
T21847 103-113 NNP denotes Technology
T21848 113-114 -RRB- denotes )
T21849 115-118 CC denotes and
T21850 119-128 VB denotes incubated
T21851 129-132 IN denotes for
T21852 133-135 CD denotes 10
T21853 136-143 NN denotes minutes
T21854 144-146 IN denotes on
T21855 147-150 NN denotes ice
T21856 151-155 RB denotes then
T21857 156-167 VB denotes centrifuged
T21858 168-170 TO denotes to
T21859 171-177 VB denotes remove
T21860 178-181 DT denotes the
T21861 182-191 JJ denotes insoluble
T21862 192-200 NN denotes fraction
T21863 202-205 DT denotes The
T21864 206-213 NN denotes protein
T21865 214-227 NN denotes concentration
T21866 228-231 VB denotes was
T21867 232-242 VB denotes determined
T21868 243-245 IN denotes by
T21869 246-249 DT denotes the
T21870 250-253 NN denotes BCA
T21871 254-261 NN denotes protein
T21872 262-267 NN denotes assay
T21873 268-269 -LRB- denotes (
T21874 269-276 NNP denotes Bio-Rad
T21875 276-277 -COMMA- denotes ,
T21876 278-286 NNP denotes Hercules
T21877 286-287 -COMMA- denotes ,
T21878 288-290 NNP denotes CA
T21879 290-291 -RRB- denotes )
T21880 293-297 NN denotes Cell
T21881 298-305 NN denotes lysates
T21882 306-310 VB denotes were
T21883 311-320 VB denotes separated
T21884 321-323 IN denotes by
T21885 324-332 NN denotes SDS-PAGE
T21886 333-335 IN denotes on
T21887 336-338 CD denotes 10
T21888 338-339 NN denotes %
T21889 340-354 NN denotes polyacrylamide
T21890 355-359 NN denotes gels
T21891 360-363 CC denotes and
T21892 364-368 RB denotes then
T21893 369-380 VB denotes transferred
T21894 381-385 IN denotes onto
T21895 386-400 NN denotes nitrocellulose
T21896 401-410 NN denotes membranes
T21897 411-414 CC denotes and
T21898 415-424 VB denotes subjected
T21899 425-427 TO denotes to
T21900 428-435 JJ denotes Western
T21901 436-444 NN denotes blotting
T21902 446-449 DT denotes The
T21903 450-463 JJ denotes immunoblotted
T21904 464-472 NN denotes proteins
T21905 473-477 VB denotes were
T21906 478-486 VB denotes detected
T21907 487-489 IN denotes by
T21908 490-493 NN denotes ECL
T21909 494-501 NN denotes reagent
T21910 502-503 -LRB- denotes (
T21911 503-505 NNP denotes GE
T21912 506-516 NNP denotes Healthcare
T21913 517-529 NNP denotes Bio-Sciences
T21914 530-535 NNP denotes Corp.
T21915 535-536 -COMMA- denotes ,
T21916 537-547 NNP denotes Piscataway
T21917 547-548 -COMMA- denotes ,
T21918 549-551 NNP denotes NJ
T21919 551-552 -RRB- denotes )
R16495 T21831 T21830 arg1Of Blot,Western
R16496 T21832 T21831 arg1Of Analysis,Blot
R16497 T21833 T21839 arg1Of Cells,resuspended
R16498 T21833 T21834 arg1Of Cells,were
R16499 T21833 T21835 arg2Of Cells,washed
R16500 T21833 T21850 arg2Of Cells,incubated
R16501 T21835 T21836 arg1Of washed,with
R16502 T21835 T21838 arg1Of washed,and
R16503 T21837 T21836 arg2Of PBS,with
R16504 T21838 T21849 arg1Of and,and
R16505 T21839 T21838 arg2Of resuspended,and
R16506 T21839 T21840 arg1Of resuspended,in
R16507 T21843 T21840 arg2Of buffer.,in
R16508 T21843 T21841 arg1Of buffer.,cell
R16509 T21843 T21842 arg1Of buffer.,lysis
R16510 T21843 T21844 arg1Of buffer.,(
R16511 T21847 T21844 arg2Of Technology,(
R16512 T21847 T21845 arg1Of Technology,Cell
R16513 T21847 T21846 arg1Of Technology,Signaling
R16514 T21848 T21844 arg3Of ),(
R16515 T21849 T21834 arg2Of and,were
R16516 T21850 T21849 arg2Of incubated,and
R16517 T21850 T21851 arg1Of incubated,for
R16518 T21853 T21851 arg2Of minutes,for
R16519 T21853 T21852 arg1Of minutes,10
R16520 T21853 T21854 arg1Of minutes,on
R16521 T21855 T21854 arg2Of ice,on
R16522 T21855 T21857 arg2Of ice,centrifuged
R16523 T21855 T21859 arg1Of ice,remove
R16524 T21857 T21856 arg1Of centrifuged,then
R16525 T21859 T21857 arg3Of remove,centrifuged
R16526 T21859 T21858 arg1Of remove,to
R16527 T21862 T21859 arg2Of fraction,remove
R16528 T21862 T21860 arg1Of fraction,the
R16529 T21862 T21861 arg1Of fraction,insoluble
R16530 T21865 T21863 arg1Of concentration,The
R16531 T21865 T21864 arg1Of concentration,protein
R16532 T21865 T21866 arg1Of concentration,was
R16533 T21865 T21867 arg2Of concentration,determined
R16534 T21867 T21866 arg2Of determined,was
R16535 T21867 T21873 arg1Of determined,(
R16536 T21872 T21867 arg1Of assay,determined
R16537 T21872 T21868 arg2Of assay,by
R16538 T21872 T21869 arg1Of assay,the
R16539 T21872 T21870 arg1Of assay,BCA
R16540 T21872 T21871 arg1Of assay,protein
R16541 T21874 T21875 arg1Of Bio-Rad,","
R16542 T21875 T21873 arg2Of ",",(
R16543 T21875 T21877 arg1Of ",",","
R16544 T21876 T21875 arg2Of Hercules,","
R16545 T21878 T21877 arg2Of CA,","
R16546 T21879 T21873 arg3Of ),(
R16547 T21881 T21880 arg1Of lysates,Cell
R16548 T21881 T21882 arg1Of lysates,were
R16549 T21881 T21883 arg2Of lysates,separated
R16550 T21881 T21893 arg2Of lysates,transferred
R16551 T21881 T21898 arg2Of lysates,subjected
R16552 T21883 T21886 arg1Of separated,on
R16553 T21883 T21891 arg1Of separated,and
R16554 T21885 T21883 arg1Of SDS-PAGE,separated
R16555 T21885 T21884 arg2Of SDS-PAGE,by
R16556 T21887 T21888 arg1Of 10,%
R16557 T21890 T21886 arg2Of gels,on
R16558 T21890 T21887 arg1Of gels,10
R16559 T21890 T21889 arg1Of gels,polyacrylamide
R16560 T21891 T21882 arg2Of and,were
R16561 T21893 T21894 arg1Of transferred,onto
R16562 T21893 T21897 arg1Of transferred,and
R16563 T21896 T21894 arg2Of membranes,onto
R16564 T21896 T21895 arg1Of membranes,nitrocellulose
R16565 T21897 T21891 arg2Of and,and
R16566 T21897 T21892 arg1Of and,then
R16567 T21898 T21897 arg2Of subjected,and
R16568 T21898 T21899 arg1Of subjected,to
R16569 T21901 T21899 arg2Of blotting,to
R16570 T21901 T21900 arg1Of blotting,Western
R16571 T21904 T21902 arg1Of proteins,The
R16572 T21904 T21903 arg1Of proteins,immunoblotted
R16573 T21904 T21905 arg1Of proteins,were
R16574 T21904 T21906 arg2Of proteins,detected
R16575 T21906 T21905 arg2Of detected,were
R16576 T21906 T21910 arg1Of detected,(
R16577 T21909 T21906 arg1Of reagent,detected
R16578 T21909 T21907 arg2Of reagent,by
R16579 T21909 T21908 arg1Of reagent,ECL
R16580 T21914 T21910 arg2Of Corp.,(
R16581 T21914 T21911 arg1Of Corp.,GE
R16582 T21914 T21912 arg1Of Corp.,Healthcare
R16583 T21914 T21913 arg1Of Corp.,Bio-Sciences
R16584 T21914 T21915 arg1Of Corp.,","
R16585 T21916 T21915 arg2Of Piscataway,","
R16586 T21916 T21917 arg1Of Piscataway,","
R16587 T21918 T21917 arg2Of NJ,","
R16588 T21919 T21910 arg3Of ),(

sentences

Id Subject Object Predicate Lexical cue
T21730 0-21 Sentence denotes Western Blot Analysis
T21731 22-201 Sentence denotes Cells were washed with PBS and resuspended in cell lysis buffer. (Cell Signaling Technology) and incubated for 10 minutes on ice then centrifuged to remove the insoluble fraction.
T21732 202-292 Sentence denotes The protein concentration was determined by the BCA protein assay (Bio-Rad, Hercules, CA).
T21733 293-445 Sentence denotes Cell lysates were separated by SDS-PAGE on 10% polyacrylamide gels and then transferred onto nitrocellulose membranes and subjected to Western blotting.
T21734 446-553 Sentence denotes The immunoblotted proteins were detected by ECL reagent (GE Healthcare Bio-Sciences Corp., Piscataway, NJ).
T328 0-21 Sentence denotes Western Blot Analysis
T329 22-201 Sentence denotes Cells were washed with PBS and resuspended in cell lysis buffer. (Cell Signaling Technology) and incubated for 10 minutes on ice then centrifuged to remove the insoluble fraction.
T330 202-292 Sentence denotes The protein concentration was determined by the BCA protein assay (Bio-Rad, Hercules, CA).
T331 293-445 Sentence denotes Cell lysates were separated by SDS-PAGE on 10% polyacrylamide gels and then transferred onto nitrocellulose membranes and subjected to Western blotting.
T332 446-553 Sentence denotes The immunoblotted proteins were detected by ECL reagent (GE Healthcare Bio-Sciences Corp., Piscataway, NJ).

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21735 0-7 JJ denotes Western
T21736 8-12 NNP denotes Blot
T21737 13-21 NNP denotes Analysis
T21738 22-27 NNPS denotes Cells
T21739 28-32 VBD denotes were
T21740 33-39 VBN denotes washed
T21741 40-44 IN denotes with
T21742 45-48 NNP denotes PBS
T21743 49-52 CC denotes and
T21744 53-64 VBD denotes resuspended
T21745 65-67 IN denotes in
T21746 68-72 NN denotes cell
T21747 73-78 NN denotes lysis
T21748 79-85 NN denotes buffer
T21749 85-86 . denotes .
T21750 87-88 -LRB- denotes (
T21751 88-92 NNP denotes Cell
T21752 93-102 NNP denotes Signaling
T21753 103-113 NNP denotes Technology
T21754 113-114 -RRB- denotes )
T21755 115-118 CC denotes and
T21756 119-128 VBN denotes incubated
T21757 129-132 IN denotes for
T21758 133-135 CD denotes 10
T21759 136-143 NNS denotes minutes
T21760 144-146 IN denotes on
T21761 147-150 NN denotes ice
T21762 151-155 RB denotes then
T21763 156-167 VBD denotes centrifuged
T21764 168-170 TO denotes to
T21765 171-177 VB denotes remove
T21766 178-181 DT denotes the
T21767 182-191 JJ denotes insoluble
T21768 192-200 NN denotes fraction
T21769 200-201 . denotes .
T21770 202-205 DT denotes The
T21771 206-213 NN denotes protein
T21772 214-227 NN denotes concentration
T21773 228-231 VBD denotes was
T21774 232-242 VBN denotes determined
T21775 243-245 IN denotes by
T21776 246-249 DT denotes the
T21777 250-253 NNP denotes BCA
T21778 254-261 NN denotes protein
T21779 262-267 NN denotes assay
T21780 268-269 -LRB- denotes (
T21781 269-276 NNP denotes Bio-Rad
T21782 276-277 , denotes ,
T21783 278-286 NNP denotes Hercules
T21784 286-287 , denotes ,
T21785 288-290 NNP denotes CA
T21786 290-291 -RRB- denotes )
T21787 291-292 . denotes .
T21788 293-297 NN denotes Cell
T21789 298-305 NNS denotes lysates
T21790 306-310 VBD denotes were
T21791 311-320 VBN denotes separated
T21792 321-323 IN denotes by
T21793 324-332 NNP denotes SDS-PAGE
T21794 333-335 IN denotes on
T21795 336-338 CD denotes 10
T21796 338-339 NN denotes %
T21797 340-354 NN denotes polyacrylamide
T21798 355-359 NNS denotes gels
T21799 360-363 CC denotes and
T21800 364-368 RB denotes then
T21801 369-380 VBD denotes transferred
T21802 381-385 IN denotes onto
T21803 386-400 JJ denotes nitrocellulose
T21804 401-410 NNS denotes membranes
T21805 411-414 CC denotes and
T21806 415-424 VBN denotes subjected
T21807 425-427 TO denotes to
T21808 428-435 JJ denotes Western
T21809 436-444 VBG denotes blotting
T21810 444-445 . denotes .
T21811 446-449 DT denotes The
T21812 450-463 JJ denotes immunoblotted
T21813 464-472 NNS denotes proteins
T21814 473-477 VBD denotes were
T21815 478-486 VBN denotes detected
T21816 487-489 IN denotes by
T21817 490-493 NNP denotes ECL
T21818 494-501 NN denotes reagent
T21819 502-503 -LRB- denotes (
T21820 503-505 NNP denotes GE
T21821 506-516 NNP denotes Healthcare
T21822 517-529 NNP denotes Bio-Sciences
T21823 530-535 NNP denotes Corp.
T21824 535-536 , denotes ,
T21825 537-547 NNP denotes Piscataway
T21826 547-548 , denotes ,
T21827 549-551 NNP denotes NJ
T21828 551-552 -RRB- denotes )
T21829 552-553 . denotes .
R16400 T21735 T21738 amod Western,Cells
R16401 T21736 T21738 compound Blot,Cells
R16402 T21737 T21738 compound Analysis,Cells
R16403 T21738 T21740 nsubjpass Cells,washed
R16404 T21739 T21740 auxpass were,washed
R16405 T21740 T21740 ROOT washed,washed
R16406 T21741 T21740 prep with,washed
R16407 T21742 T21741 pobj PBS,with
R16408 T21743 T21740 cc and,washed
R16409 T21744 T21740 conj resuspended,washed
R16410 T21745 T21744 prep in,resuspended
R16411 T21746 T21747 compound cell,lysis
R16412 T21747 T21748 compound lysis,buffer
R16413 T21748 T21745 pobj buffer,in
R16414 T21749 T21740 punct .,washed
R16415 T21750 T21753 punct (,Technology
R16416 T21751 T21753 compound Cell,Technology
R16417 T21752 T21753 compound Signaling,Technology
R16418 T21753 T21756 nsubj Technology,incubated
R16419 T21754 T21753 punct ),Technology
R16420 T21755 T21753 cc and,Technology
R16421 T21756 T21756 ROOT incubated,incubated
R16422 T21757 T21756 prep for,incubated
R16423 T21758 T21759 nummod 10,minutes
R16424 T21759 T21757 pobj minutes,for
R16425 T21760 T21759 prep on,minutes
R16426 T21761 T21760 pobj ice,on
R16427 T21762 T21763 advmod then,centrifuged
R16428 T21763 T21756 conj centrifuged,incubated
R16429 T21764 T21765 aux to,remove
R16430 T21765 T21763 xcomp remove,centrifuged
R16431 T21766 T21768 det the,fraction
R16432 T21767 T21768 amod insoluble,fraction
R16433 T21768 T21765 dobj fraction,remove
R16434 T21769 T21756 punct .,incubated
R16435 T21770 T21772 det The,concentration
R16436 T21771 T21772 compound protein,concentration
R16437 T21772 T21774 nsubjpass concentration,determined
R16438 T21773 T21774 auxpass was,determined
R16439 T21774 T21774 ROOT determined,determined
R16440 T21775 T21774 agent by,determined
R16441 T21776 T21779 det the,assay
R16442 T21777 T21779 compound BCA,assay
R16443 T21778 T21779 compound protein,assay
R16444 T21779 T21775 pobj assay,by
R16445 T21780 T21781 punct (,Bio-Rad
R16446 T21781 T21779 appos Bio-Rad,assay
R16447 T21782 T21781 punct ",",Bio-Rad
R16448 T21783 T21781 conj Hercules,Bio-Rad
R16449 T21784 T21783 punct ",",Hercules
R16450 T21785 T21783 conj CA,Hercules
R16451 T21786 T21781 punct ),Bio-Rad
R16452 T21787 T21774 punct .,determined
R16453 T21788 T21789 compound Cell,lysates
R16454 T21789 T21791 nsubjpass lysates,separated
R16455 T21790 T21791 auxpass were,separated
R16456 T21791 T21791 ROOT separated,separated
R16457 T21792 T21791 agent by,separated
R16458 T21793 T21792 pobj SDS-PAGE,by
R16459 T21794 T21791 prep on,separated
R16460 T21795 T21796 nummod 10,%
R16461 T21796 T21798 nmod %,gels
R16462 T21797 T21798 compound polyacrylamide,gels
R16463 T21798 T21794 pobj gels,on
R16464 T21799 T21791 cc and,separated
R16465 T21800 T21801 advmod then,transferred
R16466 T21801 T21791 conj transferred,separated
R16467 T21802 T21801 prep onto,transferred
R16468 T21803 T21804 amod nitrocellulose,membranes
R16469 T21804 T21802 pobj membranes,onto
R16470 T21805 T21801 cc and,transferred
R16471 T21806 T21801 conj subjected,transferred
R16472 T21807 T21806 prep to,subjected
R16473 T21808 T21809 amod Western,blotting
R16474 T21809 T21807 pobj blotting,to
R16475 T21810 T21791 punct .,separated
R16476 T21811 T21813 det The,proteins
R16477 T21812 T21813 amod immunoblotted,proteins
R16478 T21813 T21815 nsubjpass proteins,detected
R16479 T21814 T21815 auxpass were,detected
R16480 T21815 T21815 ROOT detected,detected
R16481 T21816 T21815 agent by,detected
R16482 T21817 T21818 compound ECL,reagent
R16483 T21818 T21816 pobj reagent,by
R16484 T21819 T21823 punct (,Corp.
R16485 T21820 T21823 compound GE,Corp.
R16486 T21821 T21823 compound Healthcare,Corp.
R16487 T21822 T21823 compound Bio-Sciences,Corp.
R16488 T21823 T21818 appos Corp.,reagent
R16489 T21824 T21823 punct ",",Corp.
R16490 T21825 T21823 npadvmod Piscataway,Corp.
R16491 T21826 T21825 punct ",",Piscataway
R16492 T21827 T21825 conj NJ,Piscataway
R16493 T21828 T21823 punct ),Corp.
R16494 T21829 T21815 punct .,detected