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PMC:3245220 / 36941-37102 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16980 42-45 Q04206 denotes p65
T16981 42-45 P21579 denotes p65

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T17055 23-38 Phosphorylation denotes phosphorylation
T17056 56-64 Negative_regulation denotes prevents
T17058 81-83 Positive_regulation denotes by
T17059 69-80 Protein_catabolism denotes degradation
T17060 94-102 Positive_regulation denotes mediated
T17061 103-114 Protein_catabolism denotes proteolysis
T17102 49-55 Entity denotes Ser276
T17166 42-45 Protein denotes p65
T17167 84-93 Protein denotes ubiquitin
R13028 T17102 T17055 themeOf Ser276,phosphorylation
R13029 T17102 T17166 partOf Ser276,p65
R13040 T17055 T17056 causeOf phosphorylation,prevents
R13043 T17058 T17056 themeOf by,prevents
R13049 T17059 T17058 themeOf degradation,by
R13053 T17060 T17058 causeOf mediated,by
R13058 T17061 T17060 themeOf proteolysis,mediated
R13104 T17166 T17059 themeOf p65,degradation
R13105 T17166 T17061 themeOf p65,proteolysis
R13106 T17167 T17060 causeOf ubiquitin,mediated

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T18485 42-45 Protein denotes p65
T18486 84-93 Protein denotes ubiquitin
T18487 23-38 Phosphorylation denotes phosphorylation
T18488 103-114 Protein_catabolism denotes proteolysis
R13923 T18485 T18487 themeOf p65,phosphorylation
R13924 T18486 T18488 themeOf ubiquitin,proteolysis

events-check-again

Id Subject Object Predicate Lexical cue
T18259 23-38 Phosphorylation denotes phosphorylation
T18260 42-45 Protein denotes p65
T18261 49-55 Entity denotes Ser276
T18262 56-64 Negative_regulation denotes prevents
T18263 69-80 Protein_catabolism denotes degradation
T18264 81-83 Positive_regulation denotes by
T18265 84-93 Protein denotes ubiquitin
T18266 94-102 Positive_regulation denotes mediated
T18267 103-114 Protein_catabolism denotes proteolysis
R13726 T18259 T18262 causeOf phosphorylation,prevents
R13727 T18260 T18263 themeOf p65,degradation
R13728 T18260 T18267 themeOf p65,proteolysis
R13729 T18261 T18259 themeOf Ser276,phosphorylation
R13730 T18261 T18260 partOf Ser276,p65
R13732 T18263 T18264 themeOf degradation,by
R13734 T18264 T18262 themeOf by,prevents
R13735 T18265 T18266 causeOf ubiquitin,mediated
R13736 T18266 T18264 causeOf mediated,by
R13737 T18267 T18266 themeOf proteolysis,mediated

GO-CC

Id Subject Object Predicate Lexical cue
T17291 150-155 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T17280 84-93 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

GO-BP

Id Subject Object Predicate Lexical cue
T18614 69-80 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T18618 103-114 http://purl.obolibrary.org/obo/GO_0006508 denotes proteolysis
T18661 23-38 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T16909 65-68 Anaphor denotes its
T16910 42-45 Antecedent denotes p65
R12998 T16909 T16910 boundBy its,p65

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16431 0-2 PRP denotes It
T16432 3-6 VB denotes has
T16433 7-11 VB denotes been
T16434 12-17 VB denotes shown
T16435 18-22 IN denotes that
T16436 23-38 NN denotes phosphorylation
T16437 39-41 IN denotes of
T16438 42-45 NN denotes p65
T16439 46-48 IN denotes at
T16440 49-55 NN denotes Ser276
T16441 56-64 VB denotes prevents
T16442 65-68 PRP-DOLLAR- denotes its
T16443 69-80 NN denotes degradation
T16444 81-83 IN denotes by
T16445 84-102 JJ denotes ubiquitin-mediated
T16446 103-114 NN denotes proteolysis
T16447 115-118 CC denotes and
T16448 119-127 VB denotes promotes
T16449 128-132 NN denotes cell
T16450 133-141 NN denotes survival
T16451 142-144 IN denotes in
T16452 145-149 NN denotes HeLa
T16453 150-155 NN denotes cells
T16454 156-157 -LRB- denotes [
T16455 157-159 CD denotes 24
T16456 159-160 -RRB- denotes ]
R12514 T16431 T16432 arg1Of It,has
R12515 T16431 T16433 arg1Of It,been
R12516 T16431 T16434 arg2Of It,shown
R12517 T16434 T16432 arg2Of shown,has
R12518 T16434 T16433 arg2Of shown,been
R12519 T16436 T16437 arg1Of phosphorylation,of
R12520 T16436 T16439 arg1Of phosphorylation,at
R12521 T16436 T16441 arg1Of phosphorylation,prevents
R12522 T16436 T16448 arg1Of phosphorylation,promotes
R12523 T16438 T16437 arg2Of p65,of
R12524 T16440 T16439 arg2Of Ser276,at
R12525 T16441 T16447 arg1Of prevents,and
R12526 T16443 T16441 arg2Of degradation,prevents
R12527 T16443 T16442 arg1Of degradation,its
R12528 T16443 T16444 arg1Of degradation,by
R12529 T16446 T16444 arg2Of proteolysis,by
R12530 T16446 T16445 arg1Of proteolysis,ubiquitin-mediated
R12531 T16447 T16434 arg3Of and,shown
R12532 T16447 T16435 arg1Of and,that
R12533 T16448 T16447 arg2Of promotes,and
R12534 T16448 T16451 arg1Of promotes,in
R12535 T16448 T16454 arg1Of promotes,[
R12536 T16450 T16448 arg2Of survival,promotes
R12537 T16450 T16449 arg1Of survival,cell
R12538 T16453 T16451 arg2Of cells,in
R12539 T16453 T16452 arg1Of cells,HeLa
R12540 T16455 T16454 arg2Of 24,[
R12541 T16456 T16454 arg3Of ],[

sentences

Id Subject Object Predicate Lexical cue
T14500 0-161 Sentence denotes It has been shown that phosphorylation of p65 at Ser276 prevents its degradation by ubiquitin-mediated proteolysis and promotes cell survival in HeLa cells [24].
T253 0-161 Sentence denotes It has been shown that phosphorylation of p65 at Ser276 prevents its degradation by ubiquitin-mediated proteolysis and promotes cell survival in HeLa cells [24].

2_test

Id Subject Object Predicate Lexical cue
22216091-19911008-90609735 157-159 19911008 denotes 24

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15239 0-2 PRP denotes It
T15240 3-6 VBZ denotes has
T15241 7-11 VBN denotes been
T15242 12-17 VBN denotes shown
T15243 18-22 IN denotes that
T15244 23-38 NN denotes phosphorylation
T15245 39-41 IN denotes of
T15246 42-45 NNS denotes p65
T15247 46-48 IN denotes at
T15248 49-55 NNP denotes Ser276
T15249 56-64 VBZ denotes prevents
T15250 65-68 PRP$ denotes its
T15251 69-80 NN denotes degradation
T15252 81-83 IN denotes by
T15253 84-102 JJ denotes ubiquitin-mediated
T15254 103-114 NN denotes proteolysis
T15255 115-118 CC denotes and
T15256 119-127 VBZ denotes promotes
T15257 128-132 NN denotes cell
T15258 133-141 NN denotes survival
T15259 142-144 IN denotes in
T15260 145-149 NNP denotes HeLa
T15261 150-155 NNS denotes cells
T15262 156-157 NNP denotes [
T15263 157-159 CD denotes 24
T15264 159-160 NNP denotes ]
T15265 160-161 . denotes .
R11322 T15239 T15242 nsubjpass It,shown
R11323 T15240 T15242 aux has,shown
R11324 T15241 T15242 auxpass been,shown
R11325 T15242 T15242 ROOT shown,shown
R11326 T15243 T15249 mark that,prevents
R11327 T15244 T15249 nsubj phosphorylation,prevents
R11328 T15245 T15244 prep of,phosphorylation
R11329 T15246 T15245 pobj p65,of
R11330 T15247 T15244 prep at,phosphorylation
R11331 T15248 T15247 pobj Ser276,at
R11332 T15249 T15242 ccomp prevents,shown
R11333 T15250 T15251 poss its,degradation
R11334 T15251 T15249 dobj degradation,prevents
R11335 T15252 T15251 prep by,degradation
R11336 T15253 T15254 amod ubiquitin-mediated,proteolysis
R11337 T15254 T15252 pobj proteolysis,by
R11338 T15255 T15249 cc and,prevents
R11339 T15256 T15249 conj promotes,prevents
R11340 T15257 T15258 compound cell,survival
R11341 T15258 T15256 dobj survival,promotes
R11342 T15259 T15256 prep in,promotes
R11343 T15260 T15261 compound HeLa,cells
R11344 T15261 T15259 pobj cells,in
R11345 T15262 T15264 nmod [,]
R11346 T15263 T15264 nummod 24,]
R11347 T15264 T15261 appos ],cells
R11348 T15265 T15242 punct .,shown

test2

Id Subject Object Predicate Lexical cue
T14394 23-38 Phosphorylation denotes phosphorylation
T14395 42-45 Protein denotes p65
T14396 49-55 Entity denotes Ser276
T14397 69-80 Protein_catabolism denotes degradation
T14398 84-93 Protein denotes ubiquitin
R10556 T14395 T14397 themeOf p65,degradation
R10557 T14396 T14394 themeOf Ser276,phosphorylation
R10558 T14396 T14395 partOf Ser276,p65