PMC:3245220 / 16579-17454
Annnotations
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24373 | 44-49 | P09603 | denotes | M-CSF |
T24374 | 46-49 | P04141 | denotes | CSF |
T24375 | 60-64 | P17252 | denotes | PKCα |
T24376 | 98-103 | P09603 | denotes | M-CSF |
T24377 | 100-103 | P04141 | denotes | CSF |
T24378 | 473-477 | P17252 | denotes | PKCα |
T24379 | 667-671 | P17252 | denotes | PKCα |
T24380 | 719-724 | P09603 | denotes | M-CSF |
T24381 | 721-724 | P04141 | denotes | CSF |
T24382 | 818-823 | P09603 | denotes | M-CSF |
T24383 | 820-823 | P04141 | denotes | CSF |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24384 | 50-59 | Positive_regulation | denotes | activates |
T24385 | 60-64 | Protein | denotes | PKCα |
T24386 | 473-477 | Protein | denotes | PKCα |
T24387 | 667-671 | Protein | denotes | PKCα |
T24388 | 44-49 | Protein | denotes | M-CSF |
T24389 | 98-103 | Protein | denotes | M-CSF |
T24390 | 719-724 | Protein | denotes | M-CSF |
T24391 | 818-823 | Protein | denotes | M-CSF |
R18644 | T24385 | T24384 | themeOf | PKCα,activates |
R18645 | T24388 | T24384 | causeOf | M-CSF,activates |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24459 | 44-49 | Protein | denotes | M-CSF |
T24460 | 60-64 | Protein | denotes | PKCα |
T24461 | 50-59 | Positive_regulation | denotes | activates |
T24462 | 98-103 | Protein | denotes | M-CSF |
T24463 | 184-201 | Protein | denotes | anti-PKC antibody |
T24464 | 205-225 | Protein | denotes | control IgG antibody |
T24465 | 271-281 | Protein | denotes | PKC kinase |
T24466 | 473-477 | Protein | denotes | PKCα |
T24467 | 601-604 | Protein | denotes | Rad |
T24468 | 667-671 | Protein | denotes | PKCα |
T24469 | 719-724 | Protein | denotes | M-CSF |
T24470 | 818-823 | Protein | denotes | M-CSF |
R18658 | T24459 | T24461 | causeOf | M-CSF,activates |
R18659 | T24460 | T24461 | themeOf | PKCα,activates |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24451 | 44-49 | Protein | denotes | M-CSF |
T24452 | 50-59 | Positive_regulation | denotes | activates |
T24453 | 60-64 | Protein | denotes | PKCα |
T24454 | 98-103 | Protein | denotes | M-CSF |
T24455 | 473-477 | Protein | denotes | PKCα |
T24456 | 667-671 | Protein | denotes | PKCα |
T24457 | 719-724 | Protein | denotes | M-CSF |
T24458 | 818-823 | Protein | denotes | M-CSF |
R18656 | T24451 | T24452 | causeOf | M-CSF,activates |
R18657 | T24453 | T24452 | themeOf | PKCα,activates |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24405 | 193-201 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibody |
T24406 | 217-225 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibody |
T24407 | 193-201 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibody |
T24408 | 217-225 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibody |
T24409 | 213-225 | http://purl.obolibrary.org/obo/GO_0071736 | denotes | IgG antibody |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24398 | 60-64 | http://purl.obolibrary.org/obo/GO_0004697 | denotes | PKCα |
T24399 | 473-477 | http://purl.obolibrary.org/obo/GO_0004697 | denotes | PKCα |
T24400 | 189-192 | http://purl.obolibrary.org/obo/GO_0004697 | denotes | PKC |
T24401 | 271-274 | http://purl.obolibrary.org/obo/GO_0004697 | denotes | PKC |
T24402 | 193-201 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
T24403 | 217-225 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
T24404 | 275-290 | http://purl.obolibrary.org/obo/GO_0016301 | denotes | kinase activity |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24471 | 44-59 | http://purl.obolibrary.org/obo/GO_1901258 | denotes | M-CSF activates |
T24472 | 44-59 | http://purl.obolibrary.org/obo/GO_1903971 | denotes | M-CSF activates |
T24473 | 275-290 | http://purl.obolibrary.org/obo/GO_0016301 | denotes | kinase activity |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24238 | 44-49 | NN | denotes | M-CSF |
T24239 | 50-59 | VB | denotes | activates |
T24240 | 60-64 | NN | denotes | PKCα |
T24241 | 65-67 | IN | denotes | in |
T24242 | 68-73 | JJ | denotes | human |
T24243 | 74-78 | NN | denotes | MDMs |
T24244 | 80-84 | NN | denotes | MDMs |
T24245 | 85-92 | VB | denotes | treated |
T24246 | 93-97 | IN | denotes | with |
T24247 | 98-103 | NN | denotes | M-CSF |
T24248 | 104-105 | -LRB- | denotes | ( |
T24249 | 105-108 | CD | denotes | 100 |
T24250 | 109-114 | NN | denotes | ng/ml |
T24251 | 114-115 | -RRB- | denotes | ) |
T24252 | 116-119 | IN | denotes | for |
T24253 | 120-127 | VB | denotes | varying |
T24254 | 128-135 | NN | denotes | amounts |
T24255 | 136-138 | IN | denotes | of |
T24256 | 139-143 | NN | denotes | time |
T24257 | 144-148 | VB | denotes | were |
T24258 | 149-154 | VB | denotes | lysed |
T24259 | 155-158 | CC | denotes | and |
T24260 | 159-177 | VB | denotes | immunoprecipitated |
T24261 | 178-183 | VB | denotes | using |
T24262 | 184-192 | JJ | denotes | anti-PKC |
T24263 | 193-201 | NN | denotes | antibody |
T24264 | 202-204 | CC | denotes | or |
T24265 | 205-212 | NN | denotes | control |
T24266 | 213-216 | NN | denotes | IgG |
T24267 | 217-225 | NN | denotes | antibody |
T24268 | 227-230 | CD | denotes | One |
T24269 | 231-235 | NN | denotes | half |
T24270 | 236-238 | IN | denotes | of |
T24271 | 239-242 | DT | denotes | the |
T24272 | 243-250 | NN | denotes | samples |
T24273 | 251-254 | VB | denotes | was |
T24274 | 255-259 | VB | denotes | used |
T24275 | 260-262 | TO | denotes | to |
T24276 | 263-270 | VB | denotes | analyze |
T24277 | 271-274 | NN | denotes | PKC |
T24278 | 275-281 | NN | denotes | kinase |
T24279 | 282-290 | NN | denotes | activity |
T24280 | 291-296 | VB | denotes | using |
T24281 | 297-298 | DT | denotes | a |
T24282 | 299-310 | NN | denotes | fluorescein |
T24283 | 311-317 | VB | denotes | tagged |
T24284 | 318-325 | NN | denotes | peptide |
T24285 | 326-329 | CC | denotes | and |
T24286 | 330-340 | VB | denotes | visualized |
T24287 | 341-343 | IN | denotes | by |
T24288 | 344-351 | NN | denotes | agarose |
T24289 | 352-355 | NN | denotes | gel |
T24290 | 356-371 | NN | denotes | electrophoresis |
T24291 | 372-373 | -LRB- | denotes | ( |
T24292 | 373-376 | JJ | denotes | top |
T24293 | 377-382 | NN | denotes | panel |
T24294 | 382-383 | -RRB- | denotes | ) |
T24295 | 383-384 | -COMMA- | denotes | , |
T24296 | 385-390 | IN | denotes | while |
T24297 | 391-394 | DT | denotes | the |
T24298 | 395-400 | JJ | denotes | other |
T24299 | 401-405 | NN | denotes | half |
T24300 | 406-409 | VB | denotes | was |
T24301 | 410-419 | VB | denotes | subjected |
T24302 | 420-422 | TO | denotes | to |
T24303 | 423-430 | JJ | denotes | Western |
T24304 | 431-435 | NN | denotes | blot |
T24305 | 436-444 | NN | denotes | analysis |
T24306 | 445-447 | TO | denotes | to |
T24307 | 448-455 | VB | denotes | confirm |
T24308 | 456-461 | JJ | denotes | equal |
T24309 | 462-469 | NN | denotes | amounts |
T24310 | 470-472 | IN | denotes | of |
T24311 | 473-477 | NN | denotes | PKCα |
T24312 | 478-482 | VB | denotes | were |
T24313 | 483-501 | VB | denotes | immunoprecipitated |
T24314 | 502-506 | IN | denotes | from |
T24315 | 507-511 | DT | denotes | each |
T24316 | 512-518 | NN | denotes | sample |
T24317 | 519-520 | -LRB- | denotes | ( |
T24318 | 520-526 | JJ | denotes | middle |
T24319 | 527-532 | NN | denotes | panel |
T24320 | 532-533 | -RRB- | denotes | ) |
T24321 | 535-538 | DT | denotes | The |
T24322 | 539-545 | NN | denotes | kinase |
T24323 | 546-551 | NN | denotes | assay |
T24324 | 552-555 | VB | denotes | was |
T24325 | 556-567 | VB | denotes | quantitated |
T24326 | 568-573 | VB | denotes | using |
T24327 | 574-582 | NN | denotes | Quantity |
T24328 | 583-586 | CD | denotes | One |
T24329 | 587-595 | NN | denotes | software |
T24330 | 596-597 | -LRB- | denotes | ( |
T24331 | 597-604 | NN | denotes | Bio-Rad |
T24332 | 604-605 | -RRB- | denotes | ) |
T24333 | 606-607 | -LRB- | denotes | ( |
T24334 | 607-613 | JJ | denotes | bottom |
T24335 | 614-619 | NN | denotes | panel |
T24336 | 619-620 | -RRB- | denotes | ) |
T24337 | 622-626 | NN | denotes | Data |
T24338 | 627-637 | VB | denotes | represents |
T24339 | 638-641 | DT | denotes | the |
T24340 | 642-649 | JJ | denotes | average |
T24341 | 650-654 | JJ | denotes | fold |
T24342 | 655-663 | NN | denotes | increase |
T24343 | 664-666 | IN | denotes | of |
T24344 | 667-671 | NN | denotes | PKCα |
T24345 | 672-680 | NN | denotes | activity |
T24346 | 681-683 | IN | denotes | in |
T24347 | 684-698 | JJ | denotes | non-stimulated |
T24348 | 699-706 | NN | denotes | samples |
T24349 | 707-715 | VB | denotes | compared |
T24350 | 716-718 | TO | denotes | to |
T24351 | 719-732 | JJ | denotes | M-CSF-treated |
T24352 | 733-736 | NN | denotes | MDM |
T24353 | 737-738 | NN | denotes | ± |
T24354 | 739-744 | NN | denotes | S.E.M |
T24355 | 745-748 | IN | denotes | for |
T24356 | 749-754 | CD | denotes | three |
T24357 | 755-766 | JJ | denotes | independent |
T24358 | 767-778 | NN | denotes | experiments |
T24359 | 780-782 | NN | denotes | NS |
T24360 | 782-783 | -COLON- | denotes | : |
T24361 | 784-799 | JJ | denotes | non-stimulated. |
T24362 | 800-801 | SYM | denotes | * |
T24363 | 802-805 | DT | denotes | The |
T24364 | 806-814 | NN | denotes | p-values |
T24365 | 815-817 | IN | denotes | of |
T24366 | 818-823 | NN | denotes | M-CSF |
T24367 | 824-834 | VB | denotes | stimulated |
T24368 | 835-843 | VB | denotes | compared |
T24369 | 844-846 | TO | denotes | to |
T24370 | 847-861 | JJ | denotes | non-stimulated |
T24371 | 862-866 | VB | denotes | were |
T24372 | 867-872 | CD | denotes | ≤0.05 |
R18506 | T24238 | T24239 | arg1Of | M-CSF,activates |
R18507 | T24240 | T24239 | arg2Of | PKCα,activates |
R18508 | T24240 | T24241 | arg1Of | PKCα,in |
R18509 | T24243 | T24241 | arg2Of | MDMs,in |
R18510 | T24243 | T24242 | arg1Of | MDMs,human |
R18511 | T24244 | T24245 | arg2Of | MDMs,treated |
R18512 | T24244 | T24257 | arg1Of | MDMs,were |
R18513 | T24244 | T24258 | arg2Of | MDMs,lysed |
R18514 | T24244 | T24260 | arg2Of | MDMs,immunoprecipitated |
R18515 | T24244 | T24261 | arg1Of | MDMs,using |
R18516 | T24245 | T24246 | arg1Of | treated,with |
R18517 | T24247 | T24246 | arg2Of | M-CSF,with |
R18518 | T24247 | T24248 | arg1Of | M-CSF,( |
R18519 | T24247 | T24252 | arg1Of | M-CSF,for |
R18520 | T24250 | T24248 | arg2Of | ng/ml,( |
R18521 | T24250 | T24249 | arg1Of | ng/ml,100 |
R18522 | T24251 | T24248 | arg3Of | ),( |
R18523 | T24254 | T24252 | arg2Of | amounts,for |
R18524 | T24254 | T24253 | arg1Of | amounts,varying |
R18525 | T24254 | T24255 | arg1Of | amounts,of |
R18526 | T24256 | T24255 | arg2Of | time,of |
R18527 | T24258 | T24259 | arg1Of | lysed,and |
R18528 | T24259 | T24257 | arg2Of | and,were |
R18529 | T24260 | T24259 | arg2Of | immunoprecipitated,and |
R18530 | T24261 | T24260 | arg3Of | using,immunoprecipitated |
R18531 | T24263 | T24262 | arg1Of | antibody,anti-PKC |
R18532 | T24263 | T24264 | arg1Of | antibody,or |
R18533 | T24264 | T24261 | arg2Of | or,using |
R18534 | T24267 | T24264 | arg2Of | antibody,or |
R18535 | T24267 | T24265 | arg1Of | antibody,control |
R18536 | T24267 | T24266 | arg1Of | antibody,IgG |
R18537 | T24269 | T24268 | arg1Of | half,One |
R18538 | T24269 | T24270 | arg1Of | half,of |
R18539 | T24269 | T24273 | arg1Of | half,was |
R18540 | T24269 | T24274 | arg2Of | half,used |
R18541 | T24272 | T24270 | arg2Of | samples,of |
R18542 | T24272 | T24271 | arg1Of | samples,the |
R18543 | T24274 | T24273 | arg2Of | used,was |
R18544 | T24276 | T24274 | arg3Of | analyze,used |
R18545 | T24276 | T24275 | arg1Of | analyze,to |
R18546 | T24279 | T24276 | arg2Of | activity,analyze |
R18547 | T24279 | T24277 | arg1Of | activity,PKC |
R18548 | T24279 | T24278 | arg1Of | activity,kinase |
R18549 | T24279 | T24280 | arg1Of | activity,using |
R18550 | T24282 | T24280 | arg2Of | fluorescein,using |
R18551 | T24282 | T24281 | arg1Of | fluorescein,a |
R18552 | T24282 | T24283 | arg2Of | fluorescein,tagged |
R18553 | T24282 | T24286 | arg2Of | fluorescein,visualized |
R18554 | T24283 | T24285 | arg1Of | tagged,and |
R18555 | T24284 | T24283 | arg3Of | peptide,tagged |
R18556 | T24285 | T24295 | arg1Of | and,"," |
R18557 | T24285 | T24296 | arg1Of | and,while |
R18558 | T24286 | T24285 | arg2Of | visualized,and |
R18559 | T24290 | T24286 | arg1Of | electrophoresis,visualized |
R18560 | T24290 | T24287 | arg2Of | electrophoresis,by |
R18561 | T24290 | T24288 | arg1Of | electrophoresis,agarose |
R18562 | T24290 | T24289 | arg1Of | electrophoresis,gel |
R18563 | T24290 | T24291 | arg1Of | electrophoresis,( |
R18564 | T24293 | T24291 | arg2Of | panel,( |
R18565 | T24293 | T24292 | arg1Of | panel,top |
R18566 | T24294 | T24291 | arg3Of | ),( |
R18567 | T24299 | T24297 | arg1Of | half,the |
R18568 | T24299 | T24298 | arg1Of | half,other |
R18569 | T24299 | T24300 | arg1Of | half,was |
R18570 | T24299 | T24301 | arg2Of | half,subjected |
R18571 | T24301 | T24296 | arg2Of | subjected,while |
R18572 | T24301 | T24300 | arg2Of | subjected,was |
R18573 | T24301 | T24302 | arg1Of | subjected,to |
R18574 | T24301 | T24306 | modOf | subjected,to |
R18575 | T24305 | T24302 | arg2Of | analysis,to |
R18576 | T24305 | T24303 | arg1Of | analysis,Western |
R18577 | T24305 | T24304 | arg1Of | analysis,blot |
R18578 | T24307 | T24306 | arg1Of | confirm,to |
R18579 | T24309 | T24308 | arg1Of | amounts,equal |
R18580 | T24309 | T24310 | arg1Of | amounts,of |
R18581 | T24309 | T24312 | arg1Of | amounts,were |
R18582 | T24309 | T24313 | arg2Of | amounts,immunoprecipitated |
R18583 | T24311 | T24310 | arg2Of | PKCα,of |
R18584 | T24313 | T24307 | arg2Of | immunoprecipitated,confirm |
R18585 | T24313 | T24312 | arg2Of | immunoprecipitated,were |
R18586 | T24313 | T24314 | arg1Of | immunoprecipitated,from |
R18587 | T24316 | T24314 | arg2Of | sample,from |
R18588 | T24316 | T24315 | arg1Of | sample,each |
R18589 | T24316 | T24317 | arg1Of | sample,( |
R18590 | T24319 | T24317 | arg2Of | panel,( |
R18591 | T24319 | T24318 | arg1Of | panel,middle |
R18592 | T24320 | T24317 | arg3Of | ),( |
R18593 | T24323 | T24321 | arg1Of | assay,The |
R18594 | T24323 | T24322 | arg1Of | assay,kinase |
R18595 | T24323 | T24324 | arg1Of | assay,was |
R18596 | T24323 | T24325 | arg2Of | assay,quantitated |
R18597 | T24325 | T24324 | arg2Of | quantitated,was |
R18598 | T24326 | T24325 | arg3Of | using,quantitated |
R18599 | T24329 | T24326 | arg2Of | software,using |
R18600 | T24329 | T24327 | arg1Of | software,Quantity |
R18601 | T24329 | T24328 | arg1Of | software,One |
R18602 | T24329 | T24330 | arg1Of | software,( |
R18603 | T24329 | T24333 | arg1Of | software,( |
R18604 | T24331 | T24330 | arg2Of | Bio-Rad,( |
R18605 | T24332 | T24330 | arg3Of | ),( |
R18606 | T24335 | T24333 | arg2Of | panel,( |
R18607 | T24335 | T24334 | arg1Of | panel,bottom |
R18608 | T24336 | T24333 | arg3Of | ),( |
R18609 | T24337 | T24338 | arg1Of | Data,represents |
R18610 | T24338 | T24349 | arg1Of | represents,compared |
R18611 | T24342 | T24338 | arg2Of | increase,represents |
R18612 | T24342 | T24339 | arg1Of | increase,the |
R18613 | T24342 | T24340 | arg1Of | increase,average |
R18614 | T24342 | T24341 | arg1Of | increase,fold |
R18615 | T24342 | T24343 | arg1Of | increase,of |
R18616 | T24342 | T24346 | arg1Of | increase,in |
R18617 | T24345 | T24343 | arg2Of | activity,of |
R18618 | T24345 | T24344 | arg1Of | activity,PKCα |
R18619 | T24348 | T24346 | arg2Of | samples,in |
R18620 | T24348 | T24347 | arg1Of | samples,non-stimulated |
R18621 | T24350 | T24349 | arg2Of | to,compared |
R18622 | T24354 | T24350 | arg2Of | S.E.M,to |
R18623 | T24354 | T24351 | arg1Of | S.E.M,M-CSF-treated |
R18624 | T24354 | T24352 | arg1Of | S.E.M,MDM |
R18625 | T24354 | T24353 | arg1Of | S.E.M,± |
R18626 | T24354 | T24355 | arg1Of | S.E.M,for |
R18627 | T24358 | T24355 | arg2Of | experiments,for |
R18628 | T24358 | T24356 | arg1Of | experiments,three |
R18629 | T24358 | T24357 | arg1Of | experiments,independent |
R18630 | T24359 | T24360 | arg1Of | NS,: |
R18631 | T24359 | T24361 | arg1Of | NS,non-stimulated. |
R18632 | T24359 | T24371 | modOf | NS,were |
R18633 | T24364 | T24362 | arg1Of | p-values,* |
R18634 | T24364 | T24363 | arg1Of | p-values,The |
R18635 | T24364 | T24365 | arg1Of | p-values,of |
R18636 | T24364 | T24371 | arg1Of | p-values,were |
R18637 | T24364 | T24372 | arg1Of | p-values,≤0.05 |
R18638 | T24366 | T24365 | arg2Of | M-CSF,of |
R18639 | T24366 | T24367 | arg2Of | M-CSF,stimulated |
R18640 | T24367 | T24368 | arg1Of | stimulated,compared |
R18641 | T24369 | T24368 | arg2Of | to,compared |
R18642 | T24370 | T24369 | arg2Of | non-stimulated,to |
R18643 | T24372 | T24371 | arg2Of | ≤0.05,were |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24089 | 44-79 | Sentence | denotes | M-CSF activates PKCα in human MDMs. |
T24090 | 80-226 | Sentence | denotes | MDMs treated with M-CSF (100 ng/ml) for varying amounts of time were lysed and immunoprecipitated using anti-PKC antibody or control IgG antibody. |
T24091 | 227-534 | Sentence | denotes | One half of the samples was used to analyze PKC kinase activity using a fluorescein tagged peptide and visualized by agarose gel electrophoresis (top panel), while the other half was subjected to Western blot analysis to confirm equal amounts of PKCα were immunoprecipitated from each sample (middle panel). |
T24092 | 535-621 | Sentence | denotes | The kinase assay was quantitated using Quantity One software (Bio-Rad) (bottom panel). |
T24093 | 622-779 | Sentence | denotes | Data represents the average fold increase of PKCα activity in non-stimulated samples compared to M-CSF-treated MDM ± S.E.M for three independent experiments. |
T24094 | 780-873 | Sentence | denotes | NS: non-stimulated. * The p-values of M-CSF stimulated compared to non-stimulated were ≤0.05. |
T122 | 0-79 | Sentence | denotes | 10.1371/journal.pone.0028081.g004 Figure 4 M-CSF activates PKCα in human MDMs. |
T123 | 80-226 | Sentence | denotes | MDMs treated with M-CSF (100 ng/ml) for varying amounts of time were lysed and immunoprecipitated using anti-PKC antibody or control IgG antibody. |
T124 | 227-534 | Sentence | denotes | One half of the samples was used to analyze PKC kinase activity using a fluorescein tagged peptide and visualized by agarose gel electrophoresis (top panel), while the other half was subjected to Western blot analysis to confirm equal amounts of PKCα were immunoprecipitated from each sample (middle panel). |
T125 | 535-621 | Sentence | denotes | The kinase assay was quantitated using Quantity One software (Bio-Rad) (bottom panel). |
T126 | 622-779 | Sentence | denotes | Data represents the average fold increase of PKCα activity in non-stimulated samples compared to M-CSF-treated MDM ± S.E.M for three independent experiments. |
T127 | 780-873 | Sentence | denotes | NS: non-stimulated. * The p-values of M-CSF stimulated compared to non-stimulated were ≤0.05. |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24095 | 44-49 | NNP | denotes | M-CSF |
T24096 | 50-59 | VBZ | denotes | activates |
T24097 | 60-64 | NNP | denotes | PKCα |
T24098 | 65-67 | IN | denotes | in |
T24099 | 68-73 | JJ | denotes | human |
T24100 | 74-78 | NNS | denotes | MDMs |
T24101 | 78-79 | . | denotes | . |
T24102 | 80-84 | NNS | denotes | MDMs |
T24103 | 85-92 | VBN | denotes | treated |
T24104 | 93-97 | IN | denotes | with |
T24105 | 98-103 | NNP | denotes | M-CSF |
T24106 | 104-105 | -LRB- | denotes | ( |
T24107 | 105-108 | CD | denotes | 100 |
T24108 | 109-114 | NN | denotes | ng/ml |
T24109 | 114-115 | -RRB- | denotes | ) |
T24110 | 116-119 | IN | denotes | for |
T24111 | 120-127 | VBG | denotes | varying |
T24112 | 128-135 | NNS | denotes | amounts |
T24113 | 136-138 | IN | denotes | of |
T24114 | 139-143 | NN | denotes | time |
T24115 | 144-148 | VBD | denotes | were |
T24116 | 149-154 | VBN | denotes | lysed |
T24117 | 155-158 | CC | denotes | and |
T24118 | 159-177 | VBN | denotes | immunoprecipitated |
T24119 | 178-183 | VBG | denotes | using |
T24120 | 184-192 | JJ | denotes | anti-PKC |
T24121 | 193-201 | NN | denotes | antibody |
T24122 | 202-204 | CC | denotes | or |
T24123 | 205-212 | NN | denotes | control |
T24124 | 213-216 | NNP | denotes | IgG |
T24125 | 217-225 | NN | denotes | antibody |
T24126 | 225-226 | . | denotes | . |
T24127 | 227-230 | CD | denotes | One |
T24128 | 231-235 | NN | denotes | half |
T24129 | 236-238 | IN | denotes | of |
T24130 | 239-242 | DT | denotes | the |
T24131 | 243-250 | NNS | denotes | samples |
T24132 | 251-254 | VBD | denotes | was |
T24133 | 255-259 | VBN | denotes | used |
T24134 | 260-262 | TO | denotes | to |
T24135 | 263-270 | VB | denotes | analyze |
T24136 | 271-274 | NNP | denotes | PKC |
T24137 | 275-281 | NN | denotes | kinase |
T24138 | 282-290 | NN | denotes | activity |
T24139 | 291-296 | VBG | denotes | using |
T24140 | 297-298 | DT | denotes | a |
T24141 | 299-310 | NN | denotes | fluorescein |
T24142 | 311-317 | VBD | denotes | tagged |
T24143 | 318-325 | NN | denotes | peptide |
T24144 | 326-329 | CC | denotes | and |
T24145 | 330-340 | VBN | denotes | visualized |
T24146 | 341-343 | IN | denotes | by |
T24147 | 344-351 | JJ | denotes | agarose |
T24148 | 352-355 | NN | denotes | gel |
T24149 | 356-371 | NN | denotes | electrophoresis |
T24150 | 372-373 | -LRB- | denotes | ( |
T24151 | 373-376 | JJ | denotes | top |
T24152 | 377-382 | NN | denotes | panel |
T24153 | 382-383 | -RRB- | denotes | ) |
T24154 | 383-384 | , | denotes | , |
T24155 | 385-390 | IN | denotes | while |
T24156 | 391-394 | DT | denotes | the |
T24157 | 395-400 | JJ | denotes | other |
T24158 | 401-405 | NN | denotes | half |
T24159 | 406-409 | VBD | denotes | was |
T24160 | 410-419 | VBN | denotes | subjected |
T24161 | 420-422 | TO | denotes | to |
T24162 | 423-430 | JJ | denotes | Western |
T24163 | 431-435 | NN | denotes | blot |
T24164 | 436-444 | NN | denotes | analysis |
T24165 | 445-447 | TO | denotes | to |
T24166 | 448-455 | VB | denotes | confirm |
T24167 | 456-461 | JJ | denotes | equal |
T24168 | 462-469 | NNS | denotes | amounts |
T24169 | 470-472 | IN | denotes | of |
T24170 | 473-477 | NNP | denotes | PKCα |
T24171 | 478-482 | VBD | denotes | were |
T24172 | 483-501 | VBN | denotes | immunoprecipitated |
T24173 | 502-506 | IN | denotes | from |
T24174 | 507-511 | DT | denotes | each |
T24175 | 512-518 | NN | denotes | sample |
T24176 | 519-520 | -LRB- | denotes | ( |
T24177 | 520-526 | JJ | denotes | middle |
T24178 | 527-532 | NN | denotes | panel |
T24179 | 532-533 | -RRB- | denotes | ) |
T24180 | 533-534 | . | denotes | . |
T24181 | 535-538 | DT | denotes | The |
T24182 | 539-545 | NN | denotes | kinase |
T24183 | 546-551 | NN | denotes | assay |
T24184 | 552-555 | VBD | denotes | was |
T24185 | 556-567 | VBN | denotes | quantitated |
T24186 | 568-573 | VBG | denotes | using |
T24187 | 574-582 | NNP | denotes | Quantity |
T24188 | 583-586 | CD | denotes | One |
T24189 | 587-595 | NN | denotes | software |
T24190 | 596-597 | -LRB- | denotes | ( |
T24191 | 597-604 | NNP | denotes | Bio-Rad |
T24192 | 604-605 | -RRB- | denotes | ) |
T24193 | 606-607 | -LRB- | denotes | ( |
T24194 | 607-613 | JJ | denotes | bottom |
T24195 | 614-619 | NN | denotes | panel |
T24196 | 619-620 | -RRB- | denotes | ) |
T24197 | 620-621 | . | denotes | . |
T24198 | 622-626 | NNP | denotes | Data |
T24199 | 627-637 | VBZ | denotes | represents |
T24200 | 638-641 | DT | denotes | the |
T24201 | 642-649 | JJ | denotes | average |
T24202 | 650-654 | VBP | denotes | fold |
T24203 | 655-663 | NN | denotes | increase |
T24204 | 664-666 | IN | denotes | of |
T24205 | 667-671 | NN | denotes | PKCα |
T24206 | 672-680 | NN | denotes | activity |
T24207 | 681-683 | IN | denotes | in |
T24208 | 684-698 | JJ | denotes | non-stimulated |
T24209 | 699-706 | NNS | denotes | samples |
T24210 | 707-715 | VBN | denotes | compared |
T24211 | 716-718 | TO | denotes | to |
T24212 | 719-732 | JJ | denotes | M-CSF-treated |
T24213 | 733-736 | NNP | denotes | MDM |
T24214 | 737-738 | NN | denotes | ± |
T24215 | 739-744 | NNP | denotes | S.E.M |
T24216 | 745-748 | IN | denotes | for |
T24217 | 749-754 | CD | denotes | three |
T24218 | 755-766 | JJ | denotes | independent |
T24219 | 767-778 | NNS | denotes | experiments |
T24220 | 778-779 | . | denotes | . |
T24221 | 780-782 | NNP | denotes | NS |
T24222 | 782-783 | : | denotes | : |
T24223 | 784-798 | JJ | denotes | non-stimulated |
T24224 | 798-799 | . | denotes | . |
T24225 | 800-801 | SYM | denotes | * |
T24226 | 802-805 | DT | denotes | The |
T24227 | 806-814 | NNS | denotes | p-values |
T24228 | 815-817 | IN | denotes | of |
T24229 | 818-823 | NNP | denotes | M-CSF |
T24230 | 824-834 | VBD | denotes | stimulated |
T24231 | 835-843 | VBN | denotes | compared |
T24232 | 844-846 | TO | denotes | to |
T24233 | 847-861 | JJ | denotes | non-stimulated |
T24234 | 862-866 | VBD | denotes | were |
T24235 | 867-868 | CD | denotes | ≤ |
T24236 | 868-872 | CD | denotes | 0.05 |
T24237 | 872-873 | . | denotes | . |
R18363 | T24095 | T24096 | nsubj | M-CSF,activates |
R18364 | T24096 | T24096 | ROOT | activates,activates |
R18365 | T24097 | T24096 | dobj | PKCα,activates |
R18366 | T24098 | T24096 | prep | in,activates |
R18367 | T24099 | T24100 | amod | human,MDMs |
R18368 | T24100 | T24098 | pobj | MDMs,in |
R18369 | T24101 | T24096 | punct | .,activates |
R18370 | T24102 | T24116 | nsubjpass | MDMs,lysed |
R18371 | T24103 | T24102 | acl | treated,MDMs |
R18372 | T24104 | T24103 | prep | with,treated |
R18373 | T24105 | T24104 | pobj | M-CSF,with |
R18374 | T24106 | T24108 | punct | (,ng/ml |
R18375 | T24107 | T24108 | nummod | 100,ng/ml |
R18376 | T24108 | T24105 | appos | ng/ml,M-CSF |
R18377 | T24109 | T24103 | punct | ),treated |
R18378 | T24110 | T24103 | prep | for,treated |
R18379 | T24111 | T24112 | amod | varying,amounts |
R18380 | T24112 | T24110 | pobj | amounts,for |
R18381 | T24113 | T24112 | prep | of,amounts |
R18382 | T24114 | T24113 | pobj | time,of |
R18383 | T24115 | T24116 | auxpass | were,lysed |
R18384 | T24116 | T24116 | ROOT | lysed,lysed |
R18385 | T24117 | T24116 | cc | and,lysed |
R18386 | T24118 | T24116 | conj | immunoprecipitated,lysed |
R18387 | T24119 | T24118 | advcl | using,immunoprecipitated |
R18388 | T24120 | T24121 | amod | anti-PKC,antibody |
R18389 | T24121 | T24119 | dobj | antibody,using |
R18390 | T24122 | T24121 | cc | or,antibody |
R18391 | T24123 | T24121 | conj | control,antibody |
R18392 | T24124 | T24125 | compound | IgG,antibody |
R18393 | T24125 | T24121 | conj | antibody,antibody |
R18394 | T24126 | T24116 | punct | .,lysed |
R18395 | T24127 | T24128 | nummod | One,half |
R18396 | T24128 | T24133 | nsubjpass | half,used |
R18397 | T24129 | T24128 | prep | of,half |
R18398 | T24130 | T24131 | det | the,samples |
R18399 | T24131 | T24129 | pobj | samples,of |
R18400 | T24132 | T24133 | auxpass | was,used |
R18401 | T24133 | T24133 | ROOT | used,used |
R18402 | T24134 | T24135 | aux | to,analyze |
R18403 | T24135 | T24133 | xcomp | analyze,used |
R18404 | T24136 | T24138 | compound | PKC,activity |
R18405 | T24137 | T24138 | compound | kinase,activity |
R18406 | T24138 | T24135 | dobj | activity,analyze |
R18407 | T24139 | T24135 | advcl | using,analyze |
R18408 | T24140 | T24141 | det | a,fluorescein |
R18409 | T24141 | T24139 | dobj | fluorescein,using |
R18410 | T24142 | T24133 | conj | tagged,used |
R18411 | T24143 | T24142 | dobj | peptide,tagged |
R18412 | T24144 | T24142 | cc | and,tagged |
R18413 | T24145 | T24142 | conj | visualized,tagged |
R18414 | T24146 | T24145 | agent | by,visualized |
R18415 | T24147 | T24149 | amod | agarose,electrophoresis |
R18416 | T24148 | T24149 | compound | gel,electrophoresis |
R18417 | T24149 | T24146 | pobj | electrophoresis,by |
R18418 | T24150 | T24149 | punct | (,electrophoresis |
R18419 | T24151 | T24152 | amod | top,panel |
R18420 | T24152 | T24149 | appos | panel,electrophoresis |
R18421 | T24153 | T24149 | punct | ),electrophoresis |
R18422 | T24154 | T24142 | punct | ",",tagged |
R18423 | T24155 | T24160 | mark | while,subjected |
R18424 | T24156 | T24158 | det | the,half |
R18425 | T24157 | T24158 | amod | other,half |
R18426 | T24158 | T24160 | nsubjpass | half,subjected |
R18427 | T24159 | T24160 | auxpass | was,subjected |
R18428 | T24160 | T24142 | advcl | subjected,tagged |
R18429 | T24161 | T24160 | prep | to,subjected |
R18430 | T24162 | T24164 | amod | Western,analysis |
R18431 | T24163 | T24164 | compound | blot,analysis |
R18432 | T24164 | T24161 | pobj | analysis,to |
R18433 | T24165 | T24166 | aux | to,confirm |
R18434 | T24166 | T24160 | xcomp | confirm,subjected |
R18435 | T24167 | T24168 | amod | equal,amounts |
R18436 | T24168 | T24166 | dobj | amounts,confirm |
R18437 | T24169 | T24168 | prep | of,amounts |
R18438 | T24170 | T24169 | pobj | PKCα,of |
R18439 | T24171 | T24172 | auxpass | were,immunoprecipitated |
R18440 | T24172 | T24142 | conj | immunoprecipitated,tagged |
R18441 | T24173 | T24172 | prep | from,immunoprecipitated |
R18442 | T24174 | T24175 | det | each,sample |
R18443 | T24175 | T24173 | pobj | sample,from |
R18444 | T24176 | T24178 | punct | (,panel |
R18445 | T24177 | T24178 | amod | middle,panel |
R18446 | T24178 | T24175 | appos | panel,sample |
R18447 | T24179 | T24172 | punct | ),immunoprecipitated |
R18448 | T24180 | T24133 | punct | .,used |
R18449 | T24181 | T24183 | det | The,assay |
R18450 | T24182 | T24183 | compound | kinase,assay |
R18451 | T24183 | T24185 | nsubjpass | assay,quantitated |
R18452 | T24184 | T24185 | auxpass | was,quantitated |
R18453 | T24185 | T24185 | ROOT | quantitated,quantitated |
R18454 | T24186 | T24185 | advcl | using,quantitated |
R18455 | T24187 | T24186 | dobj | Quantity,using |
R18456 | T24188 | T24189 | nummod | One,software |
R18457 | T24189 | T24195 | nmod | software,panel |
R18458 | T24190 | T24191 | punct | (,Bio-Rad |
R18459 | T24191 | T24189 | appos | Bio-Rad,software |
R18460 | T24192 | T24189 | punct | ),software |
R18461 | T24193 | T24195 | punct | (,panel |
R18462 | T24194 | T24195 | amod | bottom,panel |
R18463 | T24195 | T24187 | appos | panel,Quantity |
R18464 | T24196 | T24187 | punct | ),Quantity |
R18465 | T24197 | T24185 | punct | .,quantitated |
R18466 | T24198 | T24199 | nsubj | Data,represents |
R18467 | T24199 | T24199 | ROOT | represents,represents |
R18468 | T24200 | T24203 | det | the,increase |
R18469 | T24201 | T24202 | amod | average,fold |
R18470 | T24202 | T24203 | compound | fold,increase |
R18471 | T24203 | T24199 | dobj | increase,represents |
R18472 | T24204 | T24203 | prep | of,increase |
R18473 | T24205 | T24206 | compound | PKCα,activity |
R18474 | T24206 | T24204 | pobj | activity,of |
R18475 | T24207 | T24206 | prep | in,activity |
R18476 | T24208 | T24209 | amod | non-stimulated,samples |
R18477 | T24209 | T24207 | pobj | samples,in |
R18478 | T24210 | T24199 | prep | compared,represents |
R18479 | T24211 | T24210 | prep | to,compared |
R18480 | T24212 | T24215 | compound | M-CSF-treated,S.E.M |
R18481 | T24213 | T24214 | compound | MDM,± |
R18482 | T24214 | T24215 | compound | ±,S.E.M |
R18483 | T24215 | T24211 | pobj | S.E.M,to |
R18484 | T24216 | T24210 | prep | for,compared |
R18485 | T24217 | T24219 | nummod | three,experiments |
R18486 | T24218 | T24219 | amod | independent,experiments |
R18487 | T24219 | T24216 | pobj | experiments,for |
R18488 | T24220 | T24199 | punct | .,represents |
R18489 | T24221 | T24221 | ROOT | NS,NS |
R18490 | T24222 | T24221 | punct | :,NS |
R18491 | T24223 | T24221 | acl | non-stimulated,NS |
R18492 | T24224 | T24221 | punct | .,NS |
R18493 | T24225 | T24225 | ROOT | *,* |
R18494 | T24226 | T24227 | det | The,p-values |
R18495 | T24227 | T24230 | nsubj | p-values,stimulated |
R18496 | T24228 | T24227 | prep | of,p-values |
R18497 | T24229 | T24228 | pobj | M-CSF,of |
R18498 | T24230 | T24230 | ROOT | stimulated,stimulated |
R18499 | T24231 | T24230 | prep | compared,stimulated |
R18500 | T24232 | T24231 | prep | to,compared |
R18501 | T24233 | T24232 | pobj | non-stimulated,to |
R18502 | T24234 | T24230 | conj | were,stimulated |
R18503 | T24235 | T24236 | compound | ≤,0.05 |
R18504 | T24236 | T24234 | attr | 0.05,were |
R18505 | T24237 | T24230 | punct | .,stimulated |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24080 | 44-49 | Protein | denotes | M-CSF |
T24081 | 50-59 | Positive_regulation | denotes | activates |
T24082 | 60-64 | Protein | denotes | PKCα |
T24083 | 98-103 | Protein | denotes | M-CSF |
T24084 | 473-477 | Protein | denotes | PKCα |
T24085 | 655-663 | Positive_regulation | denotes | increase |
T24086 | 667-671 | Protein | denotes | PKCα |
T24087 | 719-724 | Protein | denotes | M-CSF |
T24088 | 818-823 | Protein | denotes | M-CSF |
R18359 | T24080 | T24081 | causeOf | M-CSF,activates |
R18360 | T24082 | T24081 | themeOf | PKCα,activates |
R18361 | T24086 | T24085 | themeOf | PKCα,increase |
R18362 | T24087 | T24085 | causeOf | M-CSF,increase |