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PMC:3245220 / 1416-1933 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3308 93-129 P09603 denotes Macrophage colony-stimulating factor
T3309 104-129 P04141 denotes colony-stimulating factor
T3310 131-136 P09603 denotes M-CSF
T3311 133-136 P04141 denotes CSF
T3312 218-223 P09603 denotes M-CSF
T3313 220-223 P04141 denotes CSF
T3314 474-479 P09603 denotes M-CSF
T3315 476-479 P04141 denotes CSF

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T3526 93-129 Protein denotes Macrophage colony-stimulating factor
T3527 131-136 Protein denotes M-CSF
T3528 474-479 Protein denotes M-CSF
T3529 218-223 Protein denotes M-CSF
R2985 T3527 T3526 equivalentTo M-CSF,Macrophage colony-stimulating factor

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4393 93-129 Protein denotes Macrophage colony-stimulating factor
T4394 131-136 Protein denotes M-CSF
T4395 218-223 Protein denotes M-CSF
T4396 441-446 Protein denotes NF-κB
T4397 474-479 Protein denotes M-CSF
T4398 447-457 Positive_regulation denotes activation
R3330 T4396 T4398 themeOf NF-κB,activation

events-check-again

Id Subject Object Predicate Lexical cue
T4262 93-129 Protein denotes Macrophage colony-stimulating factor
T4263 131-136 Protein denotes M-CSF
T4264 218-223 Protein denotes M-CSF
T4265 474-479 Protein denotes M-CSF
R3218 T4263 T4262 equivalentTo M-CSF,Macrophage colony-stimulating factor

ICD10

Id Subject Object Predicate Lexical cue
T3588 320-335 http://purl.bioontology.org/ontology/ICD10/I70 denotes atherosclerosis

GO-CC

Id Subject Object Predicate Lexical cue
T3618 233-237 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

GO-BP

Id Subject Object Predicate Lexical cue
T4585 73-82 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T4639 73-82 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis

UBERON-AE

Id Subject Object Predicate Lexical cue
T961 3-8 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T962 48-53 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T963 371-377 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2196 0-2 IN denotes in
T2197 3-8 NN denotes blood
T2198 9-12 IN denotes for
T2199 13-18 CD denotes 24–48
T2200 19-24 NN denotes hours
T2201 25-26 -LRB- denotes [
T2202 26-27 CD denotes 1
T2203 27-28 -RRB- denotes ]
T2204 30-32 IN denotes In
T2205 33-36 DT denotes the
T2206 37-44 NN denotes absence
T2207 45-47 IN denotes of
T2208 48-53 NN denotes serum
T2209 53-54 -COMMA- denotes ,
T2210 55-64 NN denotes monocytes
T2211 65-68 VB denotes die
T2212 69-72 IN denotes via
T2213 73-82 NN denotes apoptosis
T2214 83-84 -LRB- denotes [
T2215 84-85 CD denotes 1
T2216 85-86 -RRB- denotes ]
T2217 86-87 -COMMA- denotes ,
T2218 88-89 -LRB- denotes [
T2219 89-90 CD denotes 2
T2220 90-91 -RRB- denotes ]
T2221 93-103 NN denotes Macrophage
T2222 104-122 JJ denotes colony-stimulating
T2223 123-129 NN denotes factor
T2224 130-131 -LRB- denotes (
T2225 131-136 NN denotes M-CSF
T2226 136-137 -RRB- denotes )
T2227 138-148 VB denotes stimulates
T2228 149-160 JJ denotes mononuclear
T2229 161-170 NN denotes phagocyte
T2230 171-179 NN denotes survival
T2231 180-183 CC denotes and
T2232 184-199 NN denotes differentiation
T2233 200-201 -LRB- denotes [
T2234 201-202 CD denotes 3
T2235 202-203 -RRB- denotes ]
T2236 205-216 RB denotes Importantly
T2237 216-217 -COMMA- denotes ,
T2238 218-232 JJ denotes M-CSF-mediated
T2239 233-237 NN denotes cell
T2240 238-246 NN denotes survival
T2241 247-250 CC denotes and
T2242 251-261 NN denotes activation
T2243 262-264 VB denotes is
T2244 265-275 VB denotes associated
T2245 276-280 IN denotes with
T2246 281-282 DT denotes a
T2247 283-290 NN denotes variety
T2248 291-293 IN denotes of
T2249 294-299 JJ denotes human
T2250 300-308 NN denotes diseases
T2251 308-309 -COMMA- denotes ,
T2252 310-319 VB denotes including
T2253 320-335 NN denotes atherosclerosis
T2254 335-336 -COMMA- denotes ,
T2255 337-347 NN denotes transplant
T2256 348-356 JJ denotes vascular
T2257 357-366 NN denotes sclerosis
T2258 367-370 CC denotes and
T2259 371-377 NN denotes breast
T2260 378-384 NN denotes cancer
T2261 385-395 NN denotes metastasis
T2262 396-397 -LRB- denotes [
T2263 397-398 CD denotes 4
T2264 398-399 -RRB- denotes ]
T2265 399-400 -COMMA- denotes ,
T2266 401-402 -LRB- denotes [
T2267 402-403 CD denotes 5
T2268 403-404 -RRB- denotes ]
T2269 404-405 -COMMA- denotes ,
T2270 406-407 -LRB- denotes [
T2271 407-408 CD denotes 6
T2272 408-409 -RRB- denotes ]
T2273 411-413 PRP denotes We
T2274 414-424 RB denotes previously
T2275 425-435 VB denotes identified
T2276 436-440 IN denotes that
T2277 441-446 NN denotes NF-κB
T2278 447-457 NN denotes activation
T2279 458-460 VB denotes is
T2280 461-470 JJ denotes important
T2281 471-473 IN denotes in
T2282 474-487 JJ denotes M-CSF-induced
T2283 488-496 NN denotes monocyte
T2284 497-505 NN denotes survival
T2285 506-507 -LRB- denotes [
T2286 507-508 CD denotes 7
T2287 508-509 -RRB- denotes ]
T2288 511-513 IN denotes In
T15744 461-470 JJ denotes important
T15745 471-473 IN denotes in
R1768 T2197 T2196 arg2Of blood,in
R1769 T2197 T2198 arg1Of blood,for
R1771 T2200 T2198 arg2Of hours,for
R1772 T2200 T2199 arg1Of hours,24–48
R1773 T2200 T2201 arg1Of hours,[
R1774 T2202 T2201 arg2Of 1,[
R1775 T2203 T2201 arg3Of ],[
R1777 T2206 T2204 arg2Of absence,In
R1778 T2206 T2205 arg1Of absence,the
R1779 T2206 T2207 arg1Of absence,of
R1781 T2208 T2207 arg2Of serum,of
R1783 T2210 T2211 arg1Of monocytes,die
R1784 T2211 T2204 arg1Of die,In
R1785 T2211 T2209 arg1Of die,","
R1786 T2211 T2212 arg1Of die,via
R1787 T2211 T2214 arg1Of die,[
R1788 T2211 T2217 arg1Of die,","
R1789 T2211 T2218 arg1Of die,[
R1790 T2213 T2212 arg2Of apoptosis,via
R1792 T2215 T2214 arg2Of 1,[
R1793 T2216 T2214 arg3Of ],[
R1796 T2219 T2218 arg2Of 2,[
R1797 T2220 T2218 arg3Of ],[
R1799 T2223 T2221 arg1Of factor,Macrophage
R1800 T2223 T2222 arg1Of factor,colony-stimulating
R1801 T2223 T2224 arg1Of factor,(
R1802 T2223 T2227 arg1Of factor,stimulates
R1803 T2225 T2224 arg2Of M-CSF,(
R1805 T2226 T2224 arg3Of ),(
R1807 T2230 T2228 arg1Of survival,mononuclear
R1808 T2230 T2229 arg1Of survival,phagocyte
R1809 T2230 T2231 arg1Of survival,and
R1811 T2231 T2227 arg2Of and,stimulates
R1812 T2232 T2231 arg2Of differentiation,and
R1813 T2232 T2233 arg1Of differentiation,[
R1814 T2234 T2233 arg2Of 3,[
R1816 T2235 T2233 arg3Of ],[
R1819 T2240 T2238 arg1Of survival,M-CSF-mediated
R1820 T2240 T2239 arg1Of survival,cell
R1821 T2240 T2241 arg1Of survival,and
R1822 T2241 T2243 arg1Of and,is
R1823 T2241 T2244 arg2Of and,associated
R1825 T2242 T2241 arg2Of activation,and
R1828 T2244 T2236 arg1Of associated,Importantly
R1829 T2244 T2237 arg1Of associated,","
R1830 T2244 T2243 arg2Of associated,is
R1831 T2244 T2245 arg1Of associated,with
R1832 T2244 T2265 arg1Of associated,","
R1833 T2244 T2266 arg1Of associated,[
R1834 T2244 T2269 arg1Of associated,","
R1835 T2244 T2270 arg1Of associated,[
R1837 T2247 T2245 arg2Of variety,with
R1838 T2247 T2246 arg1Of variety,a
R1839 T2247 T2248 arg1Of variety,of
R1841 T2250 T2248 arg2Of diseases,of
R1842 T2250 T2249 arg1Of diseases,human
R1843 T2250 T2251 arg1Of diseases,","
R1844 T2250 T2252 arg1Of diseases,including
R1846 T2253 T2254 arg1Of atherosclerosis,","
R1847 T2254 T2258 arg1Of ",",and
R1849 T2257 T2254 arg2Of sclerosis,","
R1850 T2257 T2255 arg1Of sclerosis,transplant
R1851 T2257 T2256 arg1Of sclerosis,vascular
R1852 T2258 T2252 arg2Of and,including
R1854 T2261 T2258 arg2Of metastasis,and
R1855 T2261 T2259 arg1Of metastasis,breast
R1856 T2261 T2260 arg1Of metastasis,cancer
R1857 T2261 T2262 arg1Of metastasis,[
R1858 T2263 T2262 arg2Of 4,[
R1860 T2264 T2262 arg3Of ],[
R1862 T2267 T2266 arg2Of 5,[
R1863 T2268 T2266 arg3Of ],[
R1866 T2271 T2270 arg2Of 6,[
R1867 T2272 T2270 arg3Of ],[
R1869 T2273 T2275 arg1Of We,identified
R1870 T2275 T2274 arg1Of identified,previously
R1872 T2278 T2277 arg1Of activation,NF-κB
R1873 T2278 T2279 arg1Of activation,is
R1874 T2278 T2280 arg1Of activation,important
R1875 T2279 T2275 arg2Of is,identified
R1876 T2279 T2276 arg1Of is,that
R1877 T2280 T2279 arg2Of important,is
R1878 T2280 T2281 arg1Of important,in
R1880 T2284 T2281 arg2Of survival,in
R1881 T2284 T2282 arg1Of survival,M-CSF-induced
R1882 T2284 T2283 arg1Of survival,monocyte
R1883 T2284 T2285 arg1Of survival,[
R1884 T2286 T2285 arg2Of 7,[
R1886 T2287 T2285 arg3Of ],[
R11828 T15744 T15745 arg1Of important,in

sentences

Id Subject Object Predicate Lexical cue
T969 30-92 Sentence denotes In the absence of serum, monocytes die via apoptosis [1], [2].
T970 93-204 Sentence denotes Macrophage colony-stimulating factor (M-CSF) stimulates mononuclear phagocyte survival and differentiation [3].
T971 205-410 Sentence denotes Importantly, M-CSF-mediated cell survival and activation is associated with a variety of human diseases, including atherosclerosis, transplant vascular sclerosis and breast cancer metastasis [4], [5], [6].
T972 411-510 Sentence denotes We previously identified that NF-κB activation is important in M-CSF-induced monocyte survival [7].
T12 30-92 Sentence denotes In the absence of serum, monocytes die via apoptosis [1], [2].
T13 93-204 Sentence denotes Macrophage colony-stimulating factor (M-CSF) stimulates mononuclear phagocyte survival and differentiation [3].
T14 205-410 Sentence denotes Importantly, M-CSF-mediated cell survival and activation is associated with a variety of human diseases, including atherosclerosis, transplant vascular sclerosis and breast cancer metastasis [4], [5], [6].
T15 411-510 Sentence denotes We previously identified that NF-κB activation is important in M-CSF-induced monocyte survival [7].

2_test

Id Subject Object Predicate Lexical cue
22216091-355567-90609669 26-27 355567 denotes 1
22216091-355567-90609670 84-85 355567 denotes 1
22216091-1940344-90609671 89-90 1940344 denotes 2
22216091-10473597-90609672 201-202 10473597 denotes 3
22216091-15289345-90609673 397-398 15289345 denotes 4
22216091-8633015-90609674 402-403 8633015 denotes 5
22216091-7667279-90609675 407-408 7667279 denotes 6
22216091-11804874-90609676 507-508 11804874 denotes 7

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1027 0-2 IN denotes in
T1028 3-8 NN denotes blood
T1029 9-12 IN denotes for
T1030 13-15 CD denotes 24
T1031 16-18 CD denotes 48
T1032 19-24 NNS denotes hours
T1033 25-26 NNP denotes [
T1034 26-27 CD denotes 1
T1035 27-28 NNP denotes ]
T1036 28-29 . denotes .
T1037 30-32 IN denotes In
T1038 33-36 DT denotes the
T1039 37-44 NN denotes absence
T1040 45-47 IN denotes of
T1041 48-53 NN denotes serum
T1042 53-54 , denotes ,
T1043 55-64 NNS denotes monocytes
T1044 65-68 VBP denotes die
T1045 69-72 IN denotes via
T1046 73-82 NN denotes apoptosis
T1047 83-84 NN denotes [
T1048 84-85 CD denotes 1
T1049 85-86 NNP denotes ]
T1050 86-87 , denotes ,
T1051 88-89 NNP denotes [
T1052 89-90 CD denotes 2
T1053 90-91 NNP denotes ]
T1054 91-92 . denotes .
T1055 93-103 NNP denotes Macrophage
T1056 104-122 JJ denotes colony-stimulating
T1057 123-129 NN denotes factor
T1058 130-131 -LRB- denotes (
T1059 131-136 NNP denotes M-CSF
T1060 136-137 -RRB- denotes )
T1061 138-148 VBZ denotes stimulates
T1062 149-160 JJ denotes mononuclear
T1063 161-170 JJ denotes phagocyte
T1064 171-179 NN denotes survival
T1065 180-183 CC denotes and
T1066 184-199 NN denotes differentiation
T1067 200-201 NN denotes [
T1068 201-202 CD denotes 3
T1069 202-203 NNP denotes ]
T1070 203-204 . denotes .
T1071 205-216 RB denotes Importantly
T1072 216-217 , denotes ,
T1073 218-232 JJ denotes M-CSF-mediated
T1074 233-237 NN denotes cell
T1075 238-246 NN denotes survival
T1076 247-250 CC denotes and
T1077 251-261 NN denotes activation
T1078 262-264 VBZ denotes is
T1079 265-275 VBN denotes associated
T1080 276-280 IN denotes with
T1081 281-282 DT denotes a
T1082 283-290 NN denotes variety
T1083 291-293 IN denotes of
T1084 294-299 JJ denotes human
T1085 300-308 NNS denotes diseases
T1086 308-309 , denotes ,
T1087 310-319 VBG denotes including
T1088 320-335 NN denotes atherosclerosis
T1089 335-336 , denotes ,
T1090 337-347 NN denotes transplant
T1091 348-356 JJ denotes vascular
T1092 357-366 NN denotes sclerosis
T1093 367-370 CC denotes and
T1094 371-377 NN denotes breast
T1095 378-384 NN denotes cancer
T1096 385-395 NN denotes metastasis
T1097 396-397 NNP denotes [
T1098 397-398 CD denotes 4
T1099 398-399 NNP denotes ]
T1100 399-400 , denotes ,
T1101 401-402 NNP denotes [
T1102 402-403 CD denotes 5
T1103 403-404 NNP denotes ]
T1104 404-405 , denotes ,
T1105 406-407 NNP denotes [
T1106 407-408 CD denotes 6
T1107 408-409 NNP denotes ]
T1108 409-410 . denotes .
T1109 411-413 PRP denotes We
T1110 414-424 RB denotes previously
T1111 425-435 VBD denotes identified
T1112 436-440 IN denotes that
T1113 441-446 JJ denotes NF-κB
T1114 447-457 NN denotes activation
T1115 458-460 VBZ denotes is
T1116 461-470 JJ denotes important
T1117 471-473 IN denotes in
T1118 474-487 JJ denotes M-CSF-induced
T1119 488-496 NN denotes monocyte
T1120 497-505 NN denotes survival
T1121 506-507 NN denotes [
T1122 507-508 CD denotes 7
T1123 508-509 NNP denotes ]
T1124 509-510 . denotes .
T1125 511-513 IN denotes In
T14523 461-470 JJ denotes important
T14524 471-473 IN denotes in
R656 T1028 T1027 pobj blood,in
R658 T1030 T1029 pobj 24,for
R659 T1031 T1032 nummod 48,hours
R660 T1032 T1030 appos hours,24
R661 T1033 T1035 nmod [,]
R662 T1034 T1035 nummod 1,]
R663 T1035 T1032 appos ],hours
R665 T1037 T1044 prep In,die
R666 T1038 T1039 det the,absence
R667 T1039 T1037 pobj absence,In
R668 T1040 T1039 prep of,absence
R669 T1041 T1040 pobj serum,of
R670 T1042 T1044 punct ",",die
R671 T1043 T1044 nsubj monocytes,die
R672 T1044 T1044 ROOT die,die
R673 T1045 T1044 prep via,die
R674 T1046 T1047 compound apoptosis,[
R675 T1047 T1045 pobj [,via
R676 T1048 T1049 nummod 1,]
R677 T1049 T1044 advcl ],die
R678 T1050 T1049 punct ",",]
R679 T1051 T1053 nmod [,]
R680 T1052 T1053 nummod 2,]
R681 T1053 T1049 appos ],]
R682 T1054 T1044 punct .,die
R683 T1055 T1057 nmod Macrophage,factor
R684 T1056 T1057 amod colony-stimulating,factor
R685 T1057 T1061 nsubj factor,stimulates
R686 T1058 T1059 punct (,M-CSF
R687 T1059 T1057 appos M-CSF,factor
R688 T1060 T1057 punct ),factor
R689 T1061 T1061 ROOT stimulates,stimulates
R690 T1062 T1064 amod mononuclear,survival
R691 T1063 T1064 amod phagocyte,survival
R692 T1064 T1069 nmod survival,]
R693 T1065 T1064 cc and,survival
R694 T1066 T1067 compound differentiation,[
R695 T1067 T1064 conj [,survival
R696 T1068 T1069 nummod 3,]
R697 T1069 T1061 dobj ],stimulates
R698 T1070 T1061 punct .,stimulates
R699 T1071 T1079 advmod Importantly,associated
R700 T1072 T1079 punct ",",associated
R701 T1073 T1075 amod M-CSF-mediated,survival
R702 T1074 T1075 compound cell,survival
R703 T1075 T1079 nsubjpass survival,associated
R704 T1076 T1075 cc and,survival
R705 T1077 T1075 conj activation,survival
R706 T1078 T1079 auxpass is,associated
R707 T1079 T1079 ROOT associated,associated
R708 T1080 T1079 prep with,associated
R709 T1081 T1082 det a,variety
R710 T1082 T1080 pobj variety,with
R711 T1083 T1082 prep of,variety
R712 T1084 T1085 amod human,diseases
R713 T1085 T1083 pobj diseases,of
R714 T1086 T1085 punct ",",diseases
R715 T1087 T1085 prep including,diseases
R716 T1088 T1087 pobj atherosclerosis,including
R717 T1089 T1088 punct ",",atherosclerosis
R718 T1090 T1092 nmod transplant,sclerosis
R719 T1091 T1092 amod vascular,sclerosis
R720 T1092 T1088 conj sclerosis,atherosclerosis
R721 T1093 T1092 cc and,sclerosis
R722 T1094 T1095 compound breast,cancer
R723 T1095 T1096 compound cancer,metastasis
R724 T1096 T1092 conj metastasis,sclerosis
R725 T1097 T1099 nmod [,]
R726 T1098 T1099 nummod 4,]
R727 T1099 T1088 conj ],atherosclerosis
R728 T1100 T1099 punct ",",]
R729 T1101 T1103 nmod [,]
R730 T1102 T1103 nummod 5,]
R731 T1103 T1099 conj ],]
R732 T1104 T1103 punct ",",]
R733 T1105 T1107 nmod [,]
R734 T1106 T1107 nummod 6,]
R735 T1107 T1103 conj ],]
R736 T1108 T1079 punct .,associated
R737 T1109 T1111 nsubj We,identified
R738 T1110 T1111 advmod previously,identified
R739 T1111 T1111 ROOT identified,identified
R740 T1112 T1115 mark that,is
R741 T1113 T1114 amod NF-κB,activation
R742 T1114 T1115 nsubj activation,is
R743 T1115 T1111 ccomp is,identified
R744 T1116 T1115 acomp important,is
R745 T1117 T1116 prep in,important
R746 T1118 T1120 amod M-CSF-induced,survival
R747 T1119 T1120 compound monocyte,survival
R748 T1120 T1117 pobj survival,in
R749 T1121 T1123 nmod [,]
R750 T1122 T1123 nummod 7,]
R751 T1123 T1115 npadvmod ],is
R752 T1124 T1111 punct .,identified
R10607 T14524 T14523 prep in,important

test2

Id Subject Object Predicate Lexical cue
T907 93-129 Protein denotes Macrophage colony-stimulating factor
T908 131-136 Protein denotes M-CSF
T909 218-223 Protein denotes M-CSF
T910 474-479 Protein denotes M-CSF
R616 T908 T907 equivalentTo M-CSF,Macrophage colony-stimulating factor