PMC:3218875 / 7024-7644 JSONTXT

Annnotations TAB JSON ListView MergeView

    testone

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    bionlp-st-ge-2016-spacy-parsed

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    DLUT931

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    bionlp-st-ge-2016-uniprot

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    bionlp-st-ge-2016-test-proteins

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    2_test

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    pmc-enju-pas

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proteins are sequestered in the cytoplasm as latent complexes by inhibitory proteins referred to as inhibitor of NF-κB (IκB) proteins, which prevent NF-κB nuclear translocation and DNA binding [19]. Whereas the majority of IκBs (IκBα, IκBβ, IκBε, p105 (also known as NF-κB1), p100 (also known as NF-κB2)) serve as inhibitors of NF-κB, IκBξ and Bcl-3 instead potentiate NF-κB transactivation in the nucleus. p100 and p105 are precursors of the p52 and p50 NF-κB subunits, respectively. There are two unique NF-κB signalling pathways, termed canonical (or classical) and noncanonical (or alternative) NF-κB pathways."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T5510","span":{"begin":518,"end":537},"obj":"http://purl.obolibrary.org/obo/GO_0007165"},{"id":"T5503","span":{"begin":518,"end":528},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T5498","span":{"begin":512,"end":528},"obj":"http://purl.obolibrary.org/obo/GO_0038061"},{"id":"T5497","span":{"begin":381,"end":396},"obj":"http://purl.obolibrary.org/obo/GO_2000144"},{"id":"T5496","span":{"begin":320,"end":339},"obj":"http://purl.obolibrary.org/obo/GO_0007252"},{"id":"T5495","span":{"begin":106,"end":124},"obj":"http://purl.obolibrary.org/obo/GO_0007252"},{"id":"T5494","span":{"begin":320,"end":339},"obj":"http://purl.obolibrary.org/obo/GO_0032088"},{"id":"T5493","span":{"begin":106,"end":124},"obj":"http://purl.obolibrary.org/obo/GO_0032088"},{"id":"T5492","span":{"begin":19,"end":30},"obj":"http://purl.obolibrary.org/obo/GO_0051235"},{"id":"T5491","span":{"begin":6,"end":47},"obj":"http://purl.obolibrary.org/obo/GO_0051220"},{"id":"T5490","span":{"begin":6,"end":30},"obj":"http://purl.obolibrary.org/obo/GO_0050821"},{"id":"T5489","span":{"begin":6,"end":30},"obj":"http://purl.obolibrary.org/obo/GO_0045185"}],"text":"NF-κB proteins are sequestered in the cytoplasm as latent complexes by inhibitory proteins referred to as inhibitor of NF-κB (IκB) proteins, which prevent NF-κB nuclear translocation and DNA binding [19]. Whereas the majority of IκBs (IκBα, IκBβ, IκBε, p105 (also known as NF-κB1), p100 (also known as NF-κB2)) serve as inhibitors of NF-κB, IκBξ and Bcl-3 instead potentiate NF-κB transactivation in the nucleus. p100 and p105 are precursors of the p52 and p50 NF-κB subunits, respectively. There are two unique NF-κB signalling pathways, termed canonical (or classical) and noncanonical (or alternative) NF-κB pathways."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T5608","span":{"begin":191,"end":198},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T5607","span":{"begin":187,"end":198},"obj":"http://purl.obolibrary.org/obo/GO_0003677"}],"text":"NF-κB proteins are sequestered in the cytoplasm as latent complexes by inhibitory proteins referred to as inhibitor of NF-κB (IκB) proteins, which prevent NF-κB nuclear translocation and DNA binding [19]. Whereas the majority of IκBs (IκBα, IκBβ, IκBε, p105 (also known as NF-κB1), p100 (also known as NF-κB2)) serve as inhibitors of NF-κB, IκBξ and Bcl-3 instead potentiate NF-κB transactivation in the nucleus. p100 and p105 are precursors of the p52 and p50 NF-κB subunits, respectively. There are two unique NF-κB signalling pathways, termed canonical (or classical) and noncanonical (or alternative) NF-κB pathways."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T5683","span":{"begin":404,"end":411},"obj":"http://purl.obolibrary.org/obo/GO_0005634"},{"id":"T5682","span":{"begin":38,"end":47},"obj":"http://purl.obolibrary.org/obo/GO_0005737"}],"text":"NF-κB proteins are sequestered in the cytoplasm as latent complexes by inhibitory proteins referred to as inhibitor of NF-κB (IκB) proteins, which prevent NF-κB nuclear translocation and DNA binding [19]. Whereas the majority of IκBs (IκBα, IκBβ, IκBε, p105 (also known as NF-κB1), p100 (also known as NF-κB2)) serve as inhibitors of NF-κB, IκBξ and Bcl-3 instead potentiate NF-κB transactivation in the nucleus. p100 and p105 are precursors of the p52 and p50 NF-κB subunits, respectively. There are two unique NF-κB signalling pathways, termed canonical (or classical) and noncanonical (or alternative) NF-κB pathways."}

    sentences

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    simple1

    {"project":"simple1","denotations":[{"id":"T5802","span":{"begin":457,"end":460},"obj":"Protein"},{"id":"T5801","span":{"begin":449,"end":452},"obj":"Protein"},{"id":"T5800","span":{"begin":422,"end":426},"obj":"Protein"},{"id":"T5799","span":{"begin":413,"end":417},"obj":"Protein"},{"id":"T5798","span":{"begin":350,"end":355},"obj":"Protein"},{"id":"T5797","span":{"begin":341,"end":345},"obj":"Protein"},{"id":"T5796","span":{"begin":302,"end":308},"obj":"Protein"},{"id":"T5795","span":{"begin":282,"end":286},"obj":"Protein"},{"id":"T5794","span":{"begin":273,"end":279},"obj":"Protein"},{"id":"T5793","span":{"begin":253,"end":257},"obj":"Protein"},{"id":"T5792","span":{"begin":247,"end":251},"obj":"Protein"},{"id":"T5791","span":{"begin":241,"end":245},"obj":"Protein"},{"id":"T5790","span":{"begin":235,"end":239},"obj":"Protein"}],"text":"NF-κB proteins are sequestered in the cytoplasm as latent complexes by inhibitory proteins referred to as inhibitor of NF-κB (IκB) proteins, which prevent NF-κB nuclear translocation and DNA binding [19]. Whereas the majority of IκBs (IκBα, IκBβ, IκBε, p105 (also known as NF-κB1), p100 (also known as NF-κB2)) serve as inhibitors of NF-κB, IκBξ and Bcl-3 instead potentiate NF-κB transactivation in the nucleus. p100 and p105 are precursors of the p52 and p50 NF-κB subunits, respectively. There are two unique NF-κB signalling pathways, termed canonical (or classical) and noncanonical (or alternative) NF-κB pathways."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T7831","span":{"begin":457,"end":460},"obj":"Protein"},{"id":"T7830","span":{"begin":449,"end":452},"obj":"Protein"},{"id":"T7829","span":{"begin":422,"end":426},"obj":"Protein"},{"id":"T7828","span":{"begin":413,"end":417},"obj":"Protein"},{"id":"T7827","span":{"begin":350,"end":355},"obj":"Protein"},{"id":"T7826","span":{"begin":341,"end":345},"obj":"Protein"},{"id":"T7825","span":{"begin":302,"end":308},"obj":"Protein"},{"id":"T7824","span":{"begin":282,"end":286},"obj":"Protein"},{"id":"T7823","span":{"begin":273,"end":279},"obj":"Protein"},{"id":"T7822","span":{"begin":253,"end":257},"obj":"Protein"},{"id":"T7821","span":{"begin":247,"end":251},"obj":"Protein"},{"id":"T7820","span":{"begin":241,"end":245},"obj":"Protein"},{"id":"T7819","span":{"begin":235,"end":239},"obj":"Protein"}],"text":"NF-κB proteins are sequestered in the cytoplasm as latent complexes by inhibitory proteins referred to as inhibitor of NF-κB (IκB) proteins, which prevent NF-κB nuclear translocation and DNA binding [19]. Whereas the majority of IκBs (IκBα, IκBβ, IκBε, p105 (also known as NF-κB1), p100 (also known as NF-κB2)) serve as inhibitors of NF-κB, IκBξ and Bcl-3 instead potentiate NF-κB transactivation in the nucleus. p100 and p105 are precursors of the p52 and p50 NF-κB subunits, respectively. There are two unique NF-κB signalling pathways, termed canonical (or classical) and noncanonical (or alternative) NF-κB pathways."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T6954","span":{"begin":457,"end":460},"obj":"Protein"},{"id":"T6953","span":{"begin":449,"end":452},"obj":"Protein"},{"id":"T6952","span":{"begin":422,"end":426},"obj":"Protein"},{"id":"T6951","span":{"begin":413,"end":417},"obj":"Protein"},{"id":"T6950","span":{"begin":350,"end":355},"obj":"Protein"},{"id":"T6949","span":{"begin":341,"end":345},"obj":"Protein"},{"id":"T6948","span":{"begin":302,"end":308},"obj":"Protein"},{"id":"T6947","span":{"begin":282,"end":286},"obj":"Protein"},{"id":"T6946","span":{"begin":273,"end":279},"obj":"Protein"},{"id":"T6945","span":{"begin":253,"end":257},"obj":"Protein"},{"id":"T6944","span":{"begin":247,"end":251},"obj":"Protein"},{"id":"T6943","span":{"begin":241,"end":245},"obj":"Protein"},{"id":"T6942","span":{"begin":235,"end":239},"obj":"Protein"}],"text":"NF-κB proteins are sequestered in the cytoplasm as latent complexes by inhibitory proteins referred to as inhibitor of NF-κB (IκB) proteins, which prevent NF-κB nuclear translocation and DNA binding [19]. Whereas the majority of IκBs (IκBα, IκBβ, IκBε, p105 (also known as NF-κB1), p100 (also known as NF-κB2)) serve as inhibitors of NF-κB, IκBξ and Bcl-3 instead potentiate NF-κB transactivation in the nucleus. p100 and p105 are precursors of the p52 and p50 NF-κB subunits, respectively. There are two unique NF-κB signalling pathways, termed canonical (or classical) and noncanonical (or alternative) NF-κB pathways."}

    bionlp-st-ge-2016-test-ihmc

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    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T7381","span":{"begin":608,"end":610},"obj":"Protein"},{"id":"T7380","span":{"begin":512,"end":517},"obj":"Protein"},{"id":"T7379","span":{"begin":457,"end":475},"obj":"Protein"},{"id":"T7378","span":{"begin":449,"end":452},"obj":"Protein"},{"id":"T7377","span":{"begin":422,"end":426},"obj":"Protein"},{"id":"T7376","span":{"begin":413,"end":417},"obj":"Protein"},{"id":"T7375","span":{"begin":320,"end":330},"obj":"Negative_regulation"},{"id":"T7374","span":{"begin":320,"end":330},"obj":"Negative_regulation"},{"id":"T7373","span":{"begin":381,"end":396},"obj":"Positive_regulation"},{"id":"T7372","span":{"begin":381,"end":396},"obj":"Positive_regulation"},{"id":"T7371","span":{"begin":320,"end":330},"obj":"Negative_regulation"},{"id":"T7370","span":{"begin":364,"end":380},"obj":"Protein"},{"id":"T7369","span":{"begin":350,"end":355},"obj":"Protein"},{"id":"T7368","span":{"begin":341,"end":345},"obj":"Protein"},{"id":"T7367","span":{"begin":334,"end":339},"obj":"Protein"},{"id":"T7366","span":{"begin":302,"end":308},"obj":"Protein"},{"id":"T7365","span":{"begin":282,"end":286},"obj":"Protein"},{"id":"T7364","span":{"begin":273,"end":279},"obj":"Protein"},{"id":"T7363","span":{"begin":253,"end":257},"obj":"Protein"},{"id":"T7362","span":{"begin":147,"end":154},"obj":"Negative_regulation"},{"id":"T7361","span":{"begin":147,"end":154},"obj":"Negative_regulation"},{"id":"T7360","span":{"begin":169,"end":182},"obj":"Localization"},{"id":"T7359","span":{"begin":161,"end":168},"obj":"Entity"},{"id":"T7358","span":{"begin":106,"end":115},"obj":"Negative_regulation"},{"id":"T7357","span":{"begin":106,"end":115},"obj":"Negative_regulation"},{"id":"T7356","span":{"begin":155,"end":160},"obj":"Protein"},{"id":"T7355","span":{"begin":126,"end":129},"obj":"Protein"},{"id":"T7354","span":{"begin":119,"end":124},"obj":"Protein"},{"id":"T7353","span":{"begin":0,"end":14},"obj":"Protein"}],"relations":[{"id":"R5116","pred":"themeOf","subj":"T7354","obj":"T7357"},{"id":"R5117","pred":"themeOf","subj":"T7355","obj":"T7358"},{"id":"R5119","pred":"themeOf","subj":"T7356","obj":"T7360"},{"id":"R5120","pred":"ToLoc","subj":"T7360","obj":"T7359"},{"id":"R5122","pred":"themeOf","subj":"T7360","obj":"T7361"},{"id":"R5123","pred":"themeOf","subj":"T7360","obj":"T7362"},{"id":"R5124","pred":"Cause","subj":"T7361","obj":"T7357"},{"id":"R5125","pred":"Cause","subj":"T7362","obj":"T7358"},{"id":"R5128","pred":"themeOf","subj":"T7367","obj":"T7371"},{"id":"R5130","pred":"themeOf","subj":"T7370","obj":"T7372"},{"id":"R5131","pred":"themeOf","subj":"T7370","obj":"T7373"},{"id":"R5132","pred":"Cause","subj":"T7372","obj":"T7368"},{"id":"R5134","pred":"themeOf","subj":"T7372","obj":"T7374"},{"id":"R5137","pred":"Cause","subj":"T7373","obj":"T7369"},{"id":"R5138","pred":"themeOf","subj":"T7373","obj":"T7375"}],"text":"NF-κB proteins are sequestered in the cytoplasm as latent complexes by inhibitory proteins referred to as inhibitor of NF-κB (IκB) proteins, which prevent NF-κB nuclear translocation and DNA binding [19]. Whereas the majority of IκBs (IκBα, IκBβ, IκBε, p105 (also known as NF-κB1), p100 (also known as NF-κB2)) serve as inhibitors of NF-κB, IκBξ and Bcl-3 instead potentiate NF-κB transactivation in the nucleus. p100 and p105 are precursors of the p52 and p50 NF-κB subunits, respectively. There are two unique NF-κB signalling pathways, termed canonical (or classical) and noncanonical (or alternative) NF-κB pathways."}

    test3

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