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PMC:3218875 / 4756-5001 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T1676 126-135 Gene_expression denotes producing
T1675 9-19 Gene_expression denotes expression
T1674 0-8 Positive_regulation denotes Enhanced
T1655 201-205 Protein denotes BAFF
T1654 80-84 Protein denotes BAFF
T1653 54-78 Protein denotes B-cell activating factor
R1273 T1653 T1675 themeOf B-cell activating factor,expression
R1274 T1654 T1653 equivalentTo BAFF,B-cell activating factor

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2944 244-245 . denotes .
T2943 243-244 NNP denotes ]
T2942 241-243 CD denotes 13
T2941 240-241 NNP denotes [
T2940 237-239 NNP denotes RA
T2939 229-236 VB denotes counter
T2938 226-228 TO denotes to
T2937 216-225 VBN denotes developed
T2936 211-215 VBN denotes been
T2935 206-210 VBP denotes have
T2934 201-205 NNP denotes BAFF
T2933 198-200 IN denotes of
T2932 186-197 NNS denotes antagonists
T2931 182-185 CC denotes and
T2930 180-181 , denotes ,
T2929 178-180 NNP denotes RA
T2928 174-177 IN denotes for
T2927 159-173 JJ denotes characteristic
T2926 154-158 RB denotes also
T2925 151-153 VBZ denotes is
T2924 149-150 , denotes ,
T2923 138-149 NNS denotes lymphocytes
T2922 136-137 NNP denotes B
T2921 126-135 VBG denotes producing
T2920 124-125 : denotes -
T2919 112-124 NN denotes autoantibody
T2918 109-111 IN denotes of
T2917 100-108 NN denotes survival
T2916 96-99 DT denotes the
T2915 87-95 VBG denotes allowing
T2914 85-86 , denotes ,
T2913 84-85 -RRB- denotes )
T2912 80-84 NNP denotes BAFF
T2911 79-80 -LRB- denotes (
T2910 72-78 NN denotes factor
T2909 61-71 VBG denotes activating
T2908 54-60 NNP denotes B-cell
T2907 47-53 NN denotes member
T2906 40-46 NN denotes family
T2905 31-39 NN denotes receptor
T2904 27-30 NNP denotes TNF
T2903 23-26 DT denotes the
T2902 20-22 IN denotes of
T2901 9-19 NN denotes expression
T2900 0-8 VBN denotes Enhanced
R2243 T2923 T2918 pobj lymphocytes,of
R2245 T2924 T2925 punct ",",is
R2247 T2925 T2925 ROOT is,is
R2248 T2926 T2925 advmod also,is
R2250 T2927 T2925 acomp characteristic,is
R2251 T2928 T2927 prep for,characteristic
R2252 T2929 T2928 pobj RA,for
R2254 T2930 T2925 punct ",",is
R2255 T2931 T2925 cc and,is
R2256 T2932 T2937 nsubjpass antagonists,developed
R2258 T2933 T2932 prep of,antagonists
R2259 T2934 T2933 pobj BAFF,of
R2260 T2935 T2937 aux have,developed
R2262 T2936 T2937 auxpass been,developed
R2263 T2937 T2925 conj developed,is
R2264 T2938 T2939 aux to,counter
R2266 T2939 T2937 advcl counter,developed
R2267 T2940 T2941 compound RA,[
R2268 T2941 T2939 dobj [,counter
R2270 T2942 T2943 nummod 13,]
R2271 T2943 T2941 appos ],[
R2272 T2944 T2925 punct .,is
R2380 T2900 T2901 amod Enhanced,expression
R2385 T2901 T2925 nsubj expression,is
R2387 T2902 T2901 prep of,expression
R2391 T2903 T2907 det the,member
R2393 T2904 T2907 compound TNF,member
R2395 T2905 T2907 compound receptor,member
R2398 T2906 T2907 compound family,member
R2400 T2907 T2910 nmod member,factor
R2402 T2908 T2910 nmod B-cell,factor
R2406 T2909 T2910 amod activating,factor
R2410 T2910 T2902 pobj factor,of
R2413 T2911 T2912 punct (,BAFF
R2417 T2912 T2910 appos BAFF,factor
R2420 T2913 T2910 punct ),factor
R2425 T2914 T2901 punct ",",expression
R2432 T2915 T2901 acl allowing,expression
R2436 T2916 T2917 det the,survival
R2440 T2917 T2915 dobj survival,allowing
R2444 T2918 T2917 prep of,survival
R2449 T2919 T2921 npadvmod autoantibody,producing
R2453 T2920 T2921 punct -,producing
R2457 T2921 T2923 amod producing,lymphocytes
R2461 T2922 T2923 compound B,lymphocytes

DLUT931

Id Subject Object Predicate Lexical cue
T3396 0-8 Positive_regulation denotes Enhanced
T3395 9-19 Gene_expression denotes expression
T3375 201-205 Protein denotes BAFF
T3374 80-84 Protein denotes BAFF
T3373 54-78 Protein denotes B-cell activating factor
R2691 T3373 T3395 themeOf B-cell activating factor,expression
R2692 T3374 T3395 themeOf BAFF,expression
R2705 T3395 T3396 themeOf expression,Enhanced
R2706 T3395 T3396 themeOf expression,Enhanced

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3277 27-30 http://www.uniprot.org/uniprot/P01375 denotes TNF

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1832 201-205 Protein denotes BAFF
T1831 80-84 Protein denotes BAFF
T1830 54-78 Protein denotes B-cell activating factor

2_test

Id Subject Object Predicate Lexical cue
21639951-18771589-4289439 241-243 18771589 denotes 13

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2173 243-244 -RRB- denotes ]
T2172 241-243 CD denotes 13
T2171 240-241 -LRB- denotes [
T2170 237-239 NN denotes RA
T2169 229-236 VB denotes counter
T2168 226-228 TO denotes to
T2167 216-225 VB denotes developed
T2166 211-215 VB denotes been
T2165 206-210 VB denotes have
T2164 201-205 NN denotes BAFF
T2163 198-200 IN denotes of
T2162 186-197 NN denotes antagonists
T2161 182-185 CC denotes and
T2160 180-181 -COMMA- denotes ,
T2159 178-180 NN denotes RA
T2158 174-177 IN denotes for
T2157 159-173 JJ denotes characteristic
T2156 154-158 RB denotes also
T2155 151-153 VB denotes is
T2154 149-150 -COMMA- denotes ,
T2153 138-149 NN denotes lymphocytes
T2152 136-137 NN denotes B
T2151 126-135 VB denotes producing
T2150 112-125 NN denotes autoantibody-
T2149 109-111 IN denotes of
T2148 100-108 NN denotes survival
T2147 96-99 DT denotes the
T2146 87-95 VB denotes allowing
T2145 85-86 -COMMA- denotes ,
T2144 84-85 -RRB- denotes )
T2143 80-84 NN denotes BAFF
T2142 79-80 -LRB- denotes (
T2141 72-78 NN denotes factor
T2140 61-71 VB denotes activating
T2139 54-60 NN denotes B-cell
T2138 47-53 NN denotes member
T2137 40-46 NN denotes family
T2136 31-39 NN denotes receptor
T2135 27-30 NN denotes TNF
T2134 23-26 DT denotes the
T2133 20-22 IN denotes of
T2132 9-19 NN denotes expression
T2131 0-8 VB denotes Enhanced
R1611 T2132 T2131 arg2Of expression,Enhanced
R1612 T2132 T2133 arg1Of expression,of
R1613 T2132 T2155 arg1Of expression,is
R1614 T2132 T2157 arg1Of expression,characteristic
R1615 T2139 T2133 arg2Of B-cell,of
R1616 T2139 T2134 arg1Of B-cell,the
R1617 T2139 T2135 arg1Of B-cell,TNF
R1618 T2139 T2136 arg1Of B-cell,receptor
R1619 T2139 T2137 arg1Of B-cell,family
R1620 T2139 T2138 arg1Of B-cell,member
R1621 T2139 T2140 arg1Of B-cell,activating
R1622 T2140 T2145 arg1Of activating,","
R1623 T2140 T2146 modOf activating,allowing
R1624 T2141 T2140 arg2Of factor,activating
R1625 T2141 T2142 arg1Of factor,(
R1626 T2143 T2142 arg2Of BAFF,(
R1627 T2144 T2142 arg3Of ),(
R1628 T2148 T2146 arg2Of survival,allowing
R1629 T2148 T2147 arg1Of survival,the
R1630 T2148 T2149 arg1Of survival,of
R1631 T2148 T2151 arg1Of survival,producing
R1632 T2150 T2149 arg2Of autoantibody-,of
R1633 T2153 T2151 arg2Of lymphocytes,producing
R1634 T2153 T2152 arg1Of lymphocytes,B
R1635 T2155 T2154 arg1Of is,","
R1636 T2155 T2156 arg1Of is,also
R1637 T2155 T2161 arg1Of is,and
R1638 T2157 T2155 arg2Of characteristic,is
R1639 T2157 T2158 arg1Of characteristic,for
R1640 T2159 T2158 arg2Of RA,for
R1641 T2161 T2160 arg1Of and,","
R1642 T2162 T2163 arg1Of antagonists,of
R1643 T2162 T2165 arg1Of antagonists,have
R1644 T2162 T2166 arg1Of antagonists,been
R1645 T2162 T2167 arg2Of antagonists,developed
R1646 T2164 T2163 arg2Of BAFF,of
R1647 T2167 T2161 arg2Of developed,and
R1648 T2167 T2165 arg2Of developed,have
R1649 T2167 T2166 arg2Of developed,been
R1650 T2167 T2168 modOf developed,to
R1651 T2169 T2168 arg1Of counter,to
R1652 T2170 T2169 arg2Of RA,counter
R1653 T2170 T2171 arg1Of RA,[
R1654 T2172 T2171 arg2Of 13,[
R1655 T2173 T2171 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T2510 56-71 http://purl.obolibrary.org/obo/GO_0001775 denotes cell activating
T2509 54-71 http://purl.obolibrary.org/obo/GO_0042113 denotes B-cell activating
T2508 54-71 http://purl.obolibrary.org/obo/GO_0050864 denotes B-cell activating

GO-CC

Id Subject Object Predicate Lexical cue
T2532 56-60 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T1762 0-245 Sentence denotes Enhanced expression of the TNF receptor family member B-cell activating factor (BAFF), allowing the survival of autoantibody- producing B lymphocytes, is also characteristic for RA, and antagonists of BAFF have been developed to counter RA [13].
T27 0-245 Sentence denotes Enhanced expression of the TNF receptor family member B-cell activating factor (BAFF), allowing the survival of autoantibody- producing B lymphocytes, is also characteristic for RA, and antagonists of BAFF have been developed to counter RA [13].

simple1

Id Subject Object Predicate Lexical cue
T2589 201-205 Protein denotes BAFF
T2588 80-84 Protein denotes BAFF
T2587 54-78 Protein denotes B-cell activating factor

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T3579 9-19 Gene_expression denotes expression
T3578 0-8 Positive_regulation denotes Enhanced
T3559 201-205 Protein denotes BAFF
T3558 80-84 Protein denotes BAFF
T3557 54-78 Protein denotes B-cell activating factor
R2759 T3557 T3579 themeOf B-cell activating factor,expression
R2760 T3558 T3579 themeOf BAFF,expression
R2770 T3579 T3578 themeOf expression,Enhanced
R2771 T3579 T3578 themeOf expression,Enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3323 0-8 Positive_regulation denotes Enhanced
T3322 9-19 Gene_expression denotes expression
T3303 201-205 Protein denotes BAFF
T3302 80-84 Protein denotes BAFF
T3301 54-78 Protein denotes B-cell activating factor
R2621 T3301 T3322 themeOf B-cell activating factor,expression
R2623 T3302 T3322 themeOf BAFF,expression
R2637 T3322 T3323 themeOf expression,Enhanced
R2638 T3322 T3323 themeOf expression,Enhanced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T3651 201-205 Protein denotes BAFF
T3641 80-84 Protein denotes BAFF
T3618 109-124 Protein denotes of autoantibody
T3610 20-60 Entity denotes of the TNF receptor family member B-cell
T3683 186-205 Entity denotes antagonists of BAFF
T3672 27-53 Protein denotes TNF receptor family member
T3670 178-181 Entity denotes RA,
T3666 136-149 Entity denotes B lymphocytes

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3444 9-19 Gene_expression denotes expression
T3443 80-84 Protein denotes BAFF
T3442 27-78 Protein denotes TNF receptor family member B-cell activating factor
T3447 0-8 Positive_regulation denotes Enhanced
T3446 0-8 Positive_regulation denotes Enhanced
T3445 9-19 Gene_expression denotes expression
R2707 T3445 T3447 themeOf expression,Enhanced
R2709 T3442 T3444 themeOf TNF receptor family member B-cell activating factor,expression
R2710 T3443 T3445 themeOf BAFF,expression
R2711 T3444 T3446 themeOf expression,Enhanced

test3

Id Subject Object Predicate Lexical cue
T1731 201-205 Protein denotes BAFF
T1730 126-135 Gene_expression denotes producing
T1729 80-84 Protein denotes BAFF
T1728 54-78 Protein denotes B-cell activating factor
T1727 9-19 Gene_expression denotes expression
T1726 0-8 Positive_regulation denotes Enhanced
T1695 201-205 Protein denotes BAFF
T1694 80-84 Protein denotes BAFF
T1693 54-78 Protein denotes B-cell activating factor
R1289 T1727 T1726 themeOf expression,Enhanced
R1290 T1728 T1727 themeOf B-cell activating factor,expression
R1291 T1729 T1728 equivalentTo BAFF,B-cell activating factor