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PMC:3218875 / 4207-4478 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T1673 57-66 Gene_expression denotes expressed
T1672 0-7 Binding denotes Binding
T1651 95-98 Protein denotes CD4
T1650 28-33 Protein denotes CD154
T1649 15-26 Protein denotes CD40 ligand
R1270 T1649 T1672 themeOf CD40 ligand,Binding
R1271 T1649 T1673 themeOf CD40 ligand,expressed
R1272 T1650 T1649 equivalentTo CD154,CD40 ligand

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2854 270-271 . denotes .
T2853 259-270 NN denotes destruction
T2852 253-258 JJ denotes joint
T2851 250-252 TO denotes to
T2850 238-249 VBZ denotes contributes
T2849 232-237 WDT denotes which
T2848 230-231 , denotes ,
T2847 220-230 NNS denotes chemokines
T2846 216-219 CC denotes and
T2845 206-215 NNS denotes cytokines
T2844 190-205 JJ denotes proinflammatory
T2843 187-189 IN denotes of
T2842 177-186 NN denotes secretion
T2841 173-176 CC denotes and
T2840 159-172 NN denotes proliferation
T2839 148-158 NN denotes fibroblast
T2838 145-147 IN denotes in
T2837 135-144 VBG denotes resulting
T2836 124-134 NN denotes activation
T2835 118-123 NNP denotes NF-κB
T2834 109-117 VBZ denotes triggers
T2833 107-108 , denotes ,
T2832 102-107 NNS denotes cells
T2831 100-101 NNP denotes T
T2830 98-99 CD denotes +
T2829 95-98 NNP denotes CD4
T2828 85-94 VBN denotes activated
T2827 82-84 IN denotes of
T2826 74-81 NN denotes surface
T2825 70-73 DT denotes the
T2824 67-69 IN denotes on
T2823 57-66 VBN denotes expressed
T2822 45-56 RB denotes transiently
T2821 42-44 VBZ denotes is
T2820 36-41 WDT denotes which
T2819 34-35 , denotes ,
T2818 33-34 -RRB- denotes )
T2817 28-33 NNP denotes CD154
T2816 27-28 -LRB- denotes (
T2815 20-26 NN denotes ligand
T2814 15-19 NNP denotes CD40
T2813 11-14 DT denotes the
T2812 8-10 IN denotes of
T2811 0-7 VBG denotes Binding
R2190 T2811 T2834 advcl Binding,triggers
R2191 T2812 T2811 prep of,Binding
R2192 T2813 T2815 det the,ligand
R2193 T2814 T2815 compound CD40,ligand
R2194 T2815 T2812 pobj ligand,of
R2195 T2816 T2817 punct (,CD154
R2196 T2817 T2815 appos CD154,ligand
R2197 T2818 T2817 punct ),CD154
R2198 T2819 T2815 punct ",",ligand
R2199 T2820 T2823 nsubjpass which,expressed
R2200 T2821 T2823 auxpass is,expressed
R2201 T2822 T2823 advmod transiently,expressed
R2202 T2823 T2815 relcl expressed,ligand
R2203 T2824 T2823 prep on,expressed
R2204 T2825 T2826 det the,surface
R2205 T2826 T2824 pobj surface,on
R2206 T2827 T2826 prep of,surface
R2207 T2828 T2832 amod activated,cells
R2208 T2829 T2832 compound CD4,cells
R2209 T2830 T2832 nummod +,cells
R2210 T2831 T2832 compound T,cells
R2211 T2832 T2827 pobj cells,of
R2212 T2833 T2834 punct ",",triggers
R2213 T2834 T2834 ROOT triggers,triggers
R2214 T2835 T2836 compound NF-κB,activation
R2215 T2836 T2834 dobj activation,triggers
R2216 T2837 T2836 acl resulting,activation
R2217 T2838 T2837 prep in,resulting
R2218 T2839 T2840 compound fibroblast,proliferation
R2219 T2840 T2838 pobj proliferation,in
R2220 T2841 T2840 cc and,proliferation
R2221 T2842 T2840 conj secretion,proliferation
R2222 T2843 T2842 prep of,secretion
R2223 T2844 T2845 amod proinflammatory,cytokines
R2224 T2845 T2843 pobj cytokines,of
R2225 T2846 T2845 cc and,cytokines
R2226 T2847 T2845 conj chemokines,cytokines
R2227 T2848 T2845 punct ",",cytokines
R2228 T2849 T2850 nsubj which,contributes
R2229 T2850 T2840 relcl contributes,proliferation
R2230 T2851 T2850 prep to,contributes
R2231 T2852 T2853 amod joint,destruction
R2232 T2853 T2851 pobj destruction,to
R2233 T2854 T2834 punct .,triggers

DLUT931

Id Subject Object Predicate Lexical cue
T3394 57-66 Gene_expression denotes expressed
T3393 0-7 Binding denotes Binding
T3371 95-98 Protein denotes CD4
T3370 28-33 Protein denotes CD154
T3369 15-26 Protein denotes CD40 ligand
R2687 T3369 T3393 themeOf CD40 ligand,Binding
R2688 T3370 T3393 themeOf CD154,Binding
R2689 T3370 T3394 themeOf CD154,expressed

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3285 95-98 http://www.uniprot.org/uniprot/P01730 denotes CD4
T3283 28-33 http://www.uniprot.org/uniprot/P29965 denotes CD154
T3282 15-26 http://www.uniprot.org/uniprot/P29965 denotes CD40 ligand
T3279 15-19 http://www.uniprot.org/uniprot/P25942 denotes CD40

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1828 95-98 Protein denotes CD4
T1827 28-33 Protein denotes CD154
T1826 15-26 Protein denotes CD40 ligand

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1814 15-26 Antecedent denotes CD40 ligand
T1813 36-41 Anaphor denotes which
R1312 T1813 T1814 boundBy which,CD40 ligand

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2047 11-14 DT denotes the
T2046 8-10 IN denotes of
T2045 0-7 NN denotes Binding
T2086 259-270 NN denotes destruction
T2085 253-258 JJ denotes joint
T2084 250-252 TO denotes to
T2083 238-249 VB denotes contributes
T2082 232-237 WDT denotes which
T2081 230-231 -COMMA- denotes ,
T2080 220-230 NN denotes chemokines
T2079 216-219 CC denotes and
T2078 206-215 NN denotes cytokines
T2077 190-205 JJ denotes proinflammatory
T2076 187-189 IN denotes of
T2075 177-186 NN denotes secretion
T2074 173-176 CC denotes and
T2073 159-172 NN denotes proliferation
T2072 148-158 NN denotes fibroblast
T2071 145-147 IN denotes in
T2070 135-144 VB denotes resulting
T2069 124-134 NN denotes activation
T2068 118-123 NN denotes NF-κB
T2067 109-117 VB denotes triggers
T2066 107-108 -COMMA- denotes ,
T2065 102-107 NN denotes cells
T2064 100-101 NN denotes T
T2063 95-99 JJ denotes CD4+
T2062 85-94 VB denotes activated
T2061 82-84 IN denotes of
T2060 74-81 NN denotes surface
T2059 70-73 DT denotes the
T2058 67-69 IN denotes on
T2057 57-66 VB denotes expressed
T2056 45-56 RB denotes transiently
T2055 42-44 VB denotes is
T2054 36-41 WDT denotes which
T2053 34-35 -COMMA- denotes ,
T2052 33-34 -RRB- denotes )
T2051 28-33 NN denotes CD154
T2050 27-28 -LRB- denotes (
T2049 20-26 NN denotes ligand
T2048 15-19 NN denotes CD40
R1520 T2045 T2046 arg1Of Binding,of
R1521 T2045 T2067 arg1Of Binding,triggers
R1522 T2049 T2046 arg2Of ligand,of
R1523 T2049 T2047 arg1Of ligand,the
R1524 T2049 T2048 arg1Of ligand,CD40
R1525 T2049 T2050 arg1Of ligand,(
R1526 T2049 T2053 arg1Of ligand,","
R1527 T2049 T2054 arg1Of ligand,which
R1528 T2049 T2055 arg1Of ligand,is
R1529 T2049 T2057 arg2Of ligand,expressed
R1530 T2051 T2050 arg2Of CD154,(
R1531 T2052 T2050 arg3Of ),(
R1532 T2057 T2055 arg2Of expressed,is
R1533 T2057 T2056 arg1Of expressed,transiently
R1534 T2057 T2058 arg1Of expressed,on
R1535 T2060 T2058 arg2Of surface,on
R1536 T2060 T2059 arg1Of surface,the
R1537 T2060 T2061 arg1Of surface,of
R1538 T2065 T2061 arg2Of cells,of
R1539 T2065 T2062 arg2Of cells,activated
R1540 T2065 T2063 arg1Of cells,CD4+
R1541 T2065 T2064 arg1Of cells,T
R1542 T2067 T2066 arg1Of triggers,","
R1543 T2069 T2067 arg2Of activation,triggers
R1544 T2069 T2068 arg1Of activation,NF-κB
R1545 T2069 T2070 arg1Of activation,resulting
R1546 T2070 T2071 arg1Of resulting,in
R1547 T2073 T2072 arg1Of proliferation,fibroblast
R1548 T2073 T2074 arg1Of proliferation,and
R1549 T2074 T2071 arg2Of and,in
R1550 T2074 T2081 arg1Of and,","
R1551 T2074 T2082 arg1Of and,which
R1552 T2074 T2083 arg1Of and,contributes
R1553 T2075 T2074 arg2Of secretion,and
R1554 T2075 T2076 arg1Of secretion,of
R1555 T2078 T2077 arg1Of cytokines,proinflammatory
R1556 T2078 T2079 arg1Of cytokines,and
R1557 T2079 T2076 arg2Of and,of
R1558 T2080 T2079 arg2Of chemokines,and
R1559 T2083 T2084 arg1Of contributes,to
R1560 T2086 T2084 arg2Of destruction,to
R1561 T2086 T2085 arg1Of destruction,joint

GO-BP

Id Subject Object Predicate Lexical cue
T2507 177-186 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T2506 148-172 http://purl.obolibrary.org/obo/GO_0048144 denotes fibroblast proliferation
T2500 118-134 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation

GO-MF

Id Subject Object Predicate Lexical cue
T2519 20-26 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand
T2518 0-7 http://purl.obolibrary.org/obo/GO_0005488 denotes Binding

sentences

Id Subject Object Predicate Lexical cue
T1760 0-271 Sentence denotes Binding of the CD40 ligand (CD154), which is transiently expressed on the surface of activated CD4+ T cells, triggers NF-κB activation resulting in fibroblast proliferation and secretion of proinflammatory cytokines and chemokines, which contributes to joint destruction.
T25 0-271 Sentence denotes Binding of the CD40 ligand (CD154), which is transiently expressed on the surface of activated CD4+ T cells, triggers NF-κB activation resulting in fibroblast proliferation and secretion of proinflammatory cytokines and chemokines, which contributes to joint destruction.

simple1

Id Subject Object Predicate Lexical cue
T2585 95-98 Protein denotes CD4
T2584 28-33 Protein denotes CD154
T2583 15-26 Protein denotes CD40 ligand

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T3577 0-7 Binding denotes Binding
T3576 57-66 Gene_expression denotes expressed
T3555 95-98 Protein denotes CD4
T3554 28-33 Protein denotes CD154
T3553 15-26 Protein denotes CD40 ligand
R2755 T3553 T3576 themeOf CD40 ligand,expressed
R2756 T3553 T3577 themeOf CD40 ligand,Binding
R2757 T3554 T3576 themeOf CD154,expressed
R2758 T3554 T3577 themeOf CD154,Binding

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3321 57-66 Gene_expression denotes expressed
T3320 0-7 Binding denotes Binding
T3299 95-98 Protein denotes CD4
T3298 28-33 Protein denotes CD154
T3297 15-26 Protein denotes CD40 ligand
R2616 T3297 T3321 themeOf CD40 ligand,expressed
R2617 T3297 T3320 themeOf CD40 ligand,Binding
R2618 T3298 T3321 themeOf CD154,expressed
R2619 T3298 T3320 themeOf CD154,Binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T3697 0-35 Binding denotes Binding of the CD40 ligand (CD154),
T3695 118-144 Positive_regulation denotes NF-κB activation resulting
T3690 8-35 Entity denotes of the CD40 ligand (CD154),
T3642 220-231 Protein denotes chemokines,
T3606 28-33 Protein denotes CD154
T3685 15-19 Protein denotes CD40
T3676 82-107 Entity denotes of activated CD4+ T cells
T3673 118-123 Protein denotes NF-κB
T3671 206-215 Protein denotes cytokines
R2775 T3673 T3695 themeOf NF-κB,NF-κB activation resulting

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3438 124-134 Positive_regulation denotes activation
T3437 124-134 Positive_regulation denotes activation
T3436 57-66 Gene_expression denotes expressed
T3435 57-66 Gene_expression denotes expressed
T3359 0-7 Binding denotes Binding
T3358 121-123 Protein denotes κB
T3357 118-120 Protein denotes NF
T3356 95-99 Protein denotes CD4+
T3355 28-33 Protein denotes CD154
T3354 15-26 Protein denotes CD40 ligand
T3434 0-7 Binding denotes Binding
R2670 T3354 T3359 themeOf CD40 ligand,Binding
R2671 T3354 T3435 themeOf CD40 ligand,expressed
R2672 T3355 T3434 themeOf CD154,Binding
R2673 T3355 T3436 themeOf CD154,expressed
R2675 T3357 T3437 themeOf NF,activation
R2676 T3358 T3438 themeOf κB,activation

test3

Id Subject Object Predicate Lexical cue
T1724 95-98 Protein denotes CD4
T1723 57-66 Gene_expression denotes expressed
T1722 28-33 Protein denotes CD154
T1721 15-26 Protein denotes CD40 ligand
T1720 0-7 Binding denotes Binding
T1691 95-98 Protein denotes CD4
T1690 28-33 Protein denotes CD154
T1689 15-26 Protein denotes CD40 ligand
R1286 T1721 T1723 themeOf CD40 ligand,expressed
R1287 T1721 T1720 themeOf CD40 ligand,Binding
R1288 T1722 T1721 equivalentTo CD154,CD40 ligand