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PMC:3218875 / 32470-32628 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T17360 61-70 Localization denotes secretion
T17359 51-60 Positive_regulation denotes increased
T17358 11-19 Positive_regulation denotes elevated
T17342 105-109 Protein denotes IL-6
T17341 74-100 Protein denotes matrix metalloproteinase-1
T17340 30-37 Protein denotes miR-203
R11385 T17341 T17360 themeOf matrix metalloproteinase-1,secretion
R11386 T17342 T17360 themeOf IL-6,secretion
R11391 T17360 T17359 themeOf secretion,increased

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18468 157-158 . denotes .
T18467 156-157 NNP denotes ]
T18466 154-156 CD denotes 90
T18465 153-154 NNP denotes [
T18464 141-152 NNS denotes fibroblasts
T18463 132-140 JJ denotes synovial
T18462 129-131 NNP denotes RA
T18461 126-128 IN denotes in
T18460 117-125 VBN denotes detected
T18459 112-116 VBD denotes were
T18458 110-111 : denotes -
T18457 105-109 NN denotes IL-6
T18456 101-104 CC denotes and
T18455 81-100 NN denotes metalloproteinase-1
T18454 74-80 NN denotes matrix
T18453 71-73 IN denotes of
T18452 61-70 NN denotes secretion
T18451 51-60 VBN denotes increased
T18450 48-50 TO denotes to
T18449 40-47 VBG denotes leading
T18448 38-39 : denotes -
T18447 30-37 NN denotes miR-203
T18446 27-29 IN denotes of
T18445 20-26 NNS denotes levels
T18444 11-19 JJ denotes elevated
T18443 9-10 , denotes ,
T18442 0-9 RB denotes Similarly
R12298 T18442 T18460 advmod Similarly,detected
R12299 T18443 T18460 punct ",",detected
R12300 T18444 T18445 amod elevated,levels
R12301 T18445 T18460 nsubjpass levels,detected
R12302 T18446 T18445 prep of,levels
R12303 T18447 T18446 pobj miR-203,of
R12304 T18448 T18449 punct -,leading
R12305 T18449 T18445 acl leading,levels
R12306 T18450 T18449 prep to,leading
R12307 T18451 T18452 amod increased,secretion
R12308 T18452 T18450 pobj secretion,to
R12309 T18453 T18452 prep of,secretion
R12310 T18454 T18455 compound matrix,metalloproteinase-1
R12311 T18455 T18453 pobj metalloproteinase-1,of
R12312 T18456 T18455 cc and,metalloproteinase-1
R12313 T18457 T18455 conj IL-6,metalloproteinase-1
R12314 T18458 T18460 punct -,detected
R12315 T18459 T18460 auxpass were,detected
R12316 T18460 T18460 ROOT detected,detected
R12317 T18461 T18460 prep in,detected
R12318 T18462 T18464 nmod RA,fibroblasts
R12319 T18463 T18464 compound synovial,fibroblasts
R12320 T18464 T18465 compound fibroblasts,[
R12321 T18465 T18461 pobj [,in
R12322 T18466 T18467 nummod 90,]
R12323 T18467 T18465 appos ],[
R12324 T18468 T18460 punct .,detected

DLUT931

Id Subject Object Predicate Lexical cue
T18592 51-60 Positive_regulation denotes increased
T18591 40-47 Positive_regulation denotes leading
T18590 61-70 Localization denotes secretion
T18577 105-109 Protein denotes IL-6
T18576 74-100 Protein denotes matrix metalloproteinase-1
T18575 30-37 Protein denotes miR-203
R12384 T18576 T18590 themeOf matrix metalloproteinase-1,secretion
R12385 T18577 T18590 themeOf IL-6,secretion
R12390 T18590 T18591 themeOf secretion,leading
R12391 T18590 T18592 themeOf secretion,increased
R12392 T18590 T18591 themeOf secretion,leading
R12393 T18590 T18592 themeOf secretion,increased

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18508 105-109 http://www.uniprot.org/uniprot/P05231 denotes IL-6

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T17539 105-109 Protein denotes IL-6
T17538 74-100 Protein denotes matrix metalloproteinase-1
T17537 30-37 Protein denotes miR-203

2_test

Id Subject Object Predicate Lexical cue
21639951-21279994-4289524 154-156 21279994 denotes 90

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17948 156-157 -RRB- denotes ]
T17947 154-156 CD denotes 90
T17946 153-154 -LRB- denotes [
T17945 141-152 NN denotes fibroblasts
T17944 132-140 JJ denotes synovial
T17943 129-131 NN denotes RA
T17942 126-128 IN denotes in
T17941 117-125 VB denotes detected
T17940 112-116 VB denotes were
T17939 110-111 -COLON- denotes -
T17938 105-109 NN denotes IL-6
T17937 101-104 CC denotes and
T17936 81-100 NN denotes metalloproteinase-1
T17935 74-80 NN denotes matrix
T17934 71-73 IN denotes of
T17933 61-70 NN denotes secretion
T17932 51-60 VB denotes increased
T17931 48-50 TO denotes to
T17930 40-47 VB denotes leading
T17929 38-39 -COLON- denotes -
T17928 30-37 NN denotes miR-203
T17927 27-29 IN denotes of
T17926 20-26 NN denotes levels
T17925 11-19 JJ denotes elevated
T17924 9-10 -COMMA- denotes ,
T17923 0-9 RB denotes Similarly
R11837 T17926 T17925 arg1Of levels,elevated
R11838 T17926 T17927 arg1Of levels,of
R11839 T17926 T17929 arg1Of levels,-
R11840 T17926 T17930 arg1Of levels,leading
R11841 T17926 T17939 arg1Of levels,-
R11842 T17926 T17940 arg1Of levels,were
R11843 T17926 T17941 arg2Of levels,detected
R11844 T17928 T17927 arg2Of miR-203,of
R11845 T17930 T17931 arg1Of leading,to
R11846 T17933 T17931 arg2Of secretion,to
R11847 T17933 T17932 arg2Of secretion,increased
R11848 T17933 T17934 arg1Of secretion,of
R11849 T17936 T17935 arg1Of metalloproteinase-1,matrix
R11850 T17936 T17937 arg1Of metalloproteinase-1,and
R11851 T17937 T17934 arg2Of and,of
R11852 T17938 T17937 arg2Of IL-6,and
R11853 T17941 T17923 arg1Of detected,Similarly
R11854 T17941 T17924 arg1Of detected,","
R11855 T17941 T17940 arg2Of detected,were
R11856 T17941 T17942 arg1Of detected,in
R11857 T17941 T17946 arg1Of detected,[
R11858 T17945 T17942 arg2Of fibroblasts,in
R11859 T17945 T17943 arg1Of fibroblasts,RA
R11860 T17945 T17944 arg1Of fibroblasts,synovial
R11861 T17947 T17946 arg2Of 90,[
R11862 T17948 T17946 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T18003 61-98 http://purl.obolibrary.org/obo/GO_1904465 denotes secretion of matrix metalloproteinase
T18002 61-98 http://purl.obolibrary.org/obo/GO_1990773 denotes secretion of matrix metalloproteinase
T18001 61-98 http://purl.obolibrary.org/obo/GO_1904466 denotes secretion of matrix metalloproteinase
T18000 61-98 http://purl.obolibrary.org/obo/GO_1904464 denotes secretion of matrix metalloproteinase
T17999 61-70 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

GO-MF

Id Subject Object Predicate Lexical cue
T18006 105-109 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T18005 99-107 http://purl.obolibrary.org/obo/GO_0005149 denotes 1 and IL

sentences

Id Subject Object Predicate Lexical cue
T17448 0-158 Sentence denotes Similarly, elevated levels of miR-203 - leading to increased secretion of matrix metalloproteinase-1 and IL-6 - were detected in RA synovial fibroblasts [90].
T185 0-158 Sentence denotes Similarly, elevated levels of miR-203 - leading to increased secretion of matrix metalloproteinase-1 and IL-6 - were detected in RA synovial fibroblasts [90].

simple1

Id Subject Object Predicate Lexical cue
T18035 105-109 Protein denotes IL-6
T18034 74-100 Protein denotes matrix metalloproteinase-1
T18033 30-37 Protein denotes miR-203

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T18768 105-109 Protein denotes IL-6
T18767 74-100 Protein denotes matrix metalloproteinase-1
T18766 30-37 Protein denotes miR-203
T18784 51-60 Positive_regulation denotes increased
T18783 61-70 Localization denotes secretion
T18782 11-19 Positive_regulation denotes elevated
R12442 T18766 T18782 themeOf miR-203,elevated
R12443 T18767 T18783 themeOf matrix metalloproteinase-1,secretion
R12444 T18768 T18783 themeOf IL-6,secretion
R12449 T18783 T18784 themeOf secretion,increased
R12450 T18783 T18784 themeOf secretion,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18550 61-70 Localization denotes secretion
T18549 11-19 Positive_regulation denotes elevated
T18548 51-60 Positive_regulation denotes increased
T18535 105-109 Protein denotes IL-6
T18534 74-100 Protein denotes matrix metalloproteinase-1
T18533 30-37 Protein denotes miR-203
R12366 T18533 T18549 themeOf miR-203,elevated
R12367 T18534 T18548 themeOf matrix metalloproteinase-1,increased
R12368 T18534 T18550 themeOf matrix metalloproteinase-1,secretion
R12369 T18535 T18548 themeOf IL-6,increased
R12370 T18535 T18550 themeOf IL-6,secretion
R12372 T18550 T18548 themeOf secretion,increased
R12373 T18550 T18548 themeOf secretion,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18859 48-109 Gene_expression denotes to increased secretion of matrix metalloproteinase-1 and IL-6
T18858 48-109 Gene_expression denotes to increased secretion of matrix metalloproteinase-1 and IL-6
T18855 48-109 Positive_regulation denotes to increased secretion of matrix metalloproteinase-1 and IL-6
T18854 48-109 Positive_regulation denotes to increased secretion of matrix metalloproteinase-1 and IL-6
T18850 105-109 Protein denotes IL-6
T18846 129-131 Protein denotes RA
T18817 74-100 Protein denotes matrix metalloproteinase-1
T18800 141-157 Entity denotes fibroblasts [90]
T18798 30-37 Protein denotes miR-203
R12453 T18817 T18858 themeOf matrix metalloproteinase-1,to increased secretion of matrix metalloproteinase-1 and IL-6
R12461 T18850 T18859 themeOf IL-6,to increased secretion of matrix metalloproteinase-1 and IL-6
R12462 T18858 T18854 themeOf to increased secretion of matrix metalloproteinase-1 and IL-6,to increased secretion of matrix metalloproteinase-1 and IL-6
R12463 T18859 T18855 themeOf to increased secretion of matrix metalloproteinase-1 and IL-6,to increased secretion of matrix metalloproteinase-1 and IL-6

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18634 51-60 Positive_regulation denotes increased
T18633 51-60 Positive_regulation denotes increased
T18632 40-47 Positive_regulation denotes leading
T18631 40-47 Positive_regulation denotes leading
T18630 61-70 Localization denotes secretion
T18629 61-70 Localization denotes secretion
T18628 105-109 Protein denotes IL-6
T18627 74-100 Protein denotes matrix metalloproteinase-1
R12405 T18627 T18629 themeOf matrix metalloproteinase-1,secretion
R12406 T18628 T18630 themeOf IL-6,secretion
R12407 T18629 T18631 themeOf secretion,leading
R12408 T18629 T18633 themeOf secretion,increased
R12409 T18630 T18632 themeOf secretion,leading
R12410 T18630 T18634 themeOf secretion,increased

test3

Id Subject Object Predicate Lexical cue
T17428 105-109 Protein denotes IL-6
T17427 74-100 Protein denotes matrix metalloproteinase-1
T17426 61-70 Gene_expression denotes secretion
T17425 51-60 Positive_regulation denotes increased
T17424 30-37 Protein denotes miR-203
T17423 11-19 Positive_regulation denotes elevated
T17388 105-109 Protein denotes IL-6
T17387 74-100 Protein denotes matrix metalloproteinase-1
T17386 30-37 Protein denotes miR-203
R11396 T17426 T17425 themeOf secretion,increased
R11397 T17427 T17426 themeOf matrix metalloproteinase-1,secretion
R11398 T17428 T17426 themeOf IL-6,secretion