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PMC:3218875 / 31641-31904 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T17355 43-53 Gene_expression denotes production
T17354 31-38 Positive_regulation denotes promote
T17336 113-120 Protein denotes miR-155
T17335 39-42 Protein denotes TNF
T17334 10-17 Protein denotes miR-155
R11381 T17334 T17354 causeOf miR-155,promote
R11382 T17335 T17355 themeOf TNF,production
R11390 T17355 T17354 themeOf production,promote

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18342 262-263 . denotes .
T18341 251-262 JJ denotes substantial
T18340 248-250 VBZ denotes is
T18339 237-247 NNS denotes treatments
T18338 233-236 JJ denotes new
T18337 230-232 IN denotes of
T18336 218-229 NN denotes development
T18335 214-217 DT denotes the
T18334 210-213 IN denotes for
T18333 200-209 NN denotes potential
T18332 194-199 PRP$ denotes their
T18331 190-193 CC denotes and
T18330 187-189 NNP denotes RA
T18329 184-186 IN denotes in
T18328 171-183 NN denotes inflammation
T18327 168-170 IN denotes of
T18326 157-167 NNS denotes regulators
T18325 148-156 JJ denotes negative
T18324 138-147 JJ denotes important
T18323 135-137 VB denotes be
T18322 125-134 RB denotes therefore
T18321 121-124 MD denotes may
T18320 113-120 NN denotes miR-155
T18319 109-112 CC denotes and
T18318 101-108 NN denotes miR-146
T18317 99-100 . denotes .
T18316 98-99 NNP denotes ]
T18315 96-98 CD denotes 87
T18314 95-96 NNP denotes [
T18313 92-94 NNP denotes RA
T18312 89-91 IN denotes of
T18311 76-88 NN denotes pathogenesis
T18310 72-75 DT denotes the
T18309 69-71 IN denotes in
T18308 61-68 NN denotes process
T18307 57-60 JJ denotes key
T18306 55-56 DT denotes a
T18305 53-54 , denotes ,
T18304 43-53 NN denotes production
T18303 39-42 NNP denotes TNF
T18302 31-38 VB denotes promote
T18301 28-30 TO denotes to
T18300 22-27 VBN denotes shown
T18299 18-21 VBD denotes was
T18298 10-17 NN denotes miR-155
T18297 8-9 , denotes ,
T18296 0-8 RB denotes Moreover
R12152 T18296 T18300 advmod Moreover,shown
R12153 T18297 T18300 punct ",",shown
R12154 T18298 T18300 nsubjpass miR-155,shown
R12155 T18299 T18300 auxpass was,shown
R12156 T18300 T18300 ROOT shown,shown
R12157 T18301 T18302 aux to,promote
R12158 T18302 T18300 xcomp promote,shown
R12159 T18303 T18304 compound TNF,production
R12160 T18304 T18302 dobj production,promote
R12161 T18305 T18304 punct ",",production
R12162 T18306 T18308 det a,process
R12163 T18307 T18308 amod key,process
R12164 T18308 T18304 appos process,production
R12165 T18309 T18308 prep in,process
R12166 T18310 T18311 det the,pathogenesis
R12167 T18311 T18309 pobj pathogenesis,in
R12168 T18312 T18311 prep of,pathogenesis
R12169 T18313 T18314 compound RA,[
R12170 T18314 T18312 pobj [,of
R12171 T18315 T18316 nummod 87,]
R12172 T18316 T18311 appos ],pathogenesis
R12173 T18317 T18300 punct .,shown
R12174 T18318 T18323 nsubj miR-146,be
R12175 T18319 T18318 cc and,miR-146
R12176 T18320 T18318 conj miR-155,miR-146
R12177 T18321 T18323 aux may,be
R12178 T18322 T18323 advmod therefore,be
R12179 T18323 T18323 ROOT be,be
R12180 T18324 T18326 amod important,regulators
R12181 T18325 T18326 amod negative,regulators
R12182 T18326 T18323 attr regulators,be
R12183 T18327 T18326 prep of,regulators
R12184 T18328 T18327 pobj inflammation,of
R12185 T18329 T18328 prep in,inflammation
R12186 T18330 T18329 pobj RA,in
R12187 T18331 T18323 cc and,be
R12188 T18332 T18333 poss their,potential
R12189 T18333 T18340 nsubj potential,is
R12190 T18334 T18333 prep for,potential
R12191 T18335 T18336 det the,development
R12192 T18336 T18334 pobj development,for
R12193 T18337 T18336 prep of,development
R12194 T18338 T18339 amod new,treatments
R12195 T18339 T18337 pobj treatments,of
R12196 T18340 T18323 conj is,be
R12197 T18341 T18340 acomp substantial,is
R12198 T18342 T18340 punct .,is

DLUT931

Id Subject Object Predicate Lexical cue
T18587 31-38 Positive_regulation denotes promote
T18586 43-53 Gene_expression denotes production
T18571 113-120 Protein denotes miR-155
T18570 39-42 Protein denotes TNF
T18569 10-17 Protein denotes miR-155
R12380 T18569 T18587 causeOf miR-155,promote
R12381 T18570 T18586 themeOf TNF,production
R12389 T18586 T18587 themeOf production,promote

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18503 39-42 http://www.uniprot.org/uniprot/P01375 denotes TNF

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T17533 113-120 Protein denotes miR-155
T17532 39-42 Protein denotes TNF
T17531 10-17 Protein denotes miR-155

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T17512 113-120 Antecedent denotes miR-155

2_test

Id Subject Object Predicate Lexical cue
21639951-17463289-4289521 96-98 17463289 denotes 87

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17797 76-88 NN denotes pathogenesis
T17796 72-75 DT denotes the
T17795 69-71 IN denotes in
T17794 61-68 NN denotes process
T17793 57-60 JJ denotes key
T17792 55-56 DT denotes a
T17791 53-54 -COMMA- denotes ,
T17790 43-53 NN denotes production
T17789 39-42 NN denotes TNF
T17788 31-38 VB denotes promote
T17787 28-30 TO denotes to
T17786 22-27 VB denotes shown
T17785 18-21 VB denotes was
T17784 10-17 NN denotes miR-155
T17783 8-9 -COMMA- denotes ,
T17782 0-8 RB denotes Moreover
T17826 230-241 JJ denotes of new trea
T17825 228-230 VB denotes t
T17824 218-228 NN denotes developmen
T17823 214-217 JJ denotes the
T17822 211-213 IN denotes or
T17821 200-211 NN denotes potential f
T17820 197-200 DT denotes ir
T17819 194-197 IN denotes the
T17818 184-193 NN denotes in RA and
T17817 179-184 PRP-DOLLAR- denotes tion
T17816 176-179 CC denotes mma
T17815 174-176 NN denotes la
T17814 172-174 IN denotes nf
T17813 160-172 NN denotes ulators of i
T17812 158-160 IN denotes eg
T17811 148-158 NN denotes negative r
T17810 139-147 JJ denotes mportant
T17809 130-139 JJ denotes fore be i
T17808 128-130 VB denotes re
T17807 119-128 RB denotes 5 may the
T17806 116-119 MD denotes -15
T17805 109-116 NN denotes and miR
T17804 106-109 CC denotes 46
T17803 99-106 NN denotes . miR-1
T17802 98-99 -RRB- denotes ]
T17801 96-98 CD denotes 87
T17800 95-96 -LRB- denotes [
T17799 92-94 NN denotes RA
T17798 89-91 IN denotes of
R11688 T17784 T17785 arg1Of miR-155,was
R11689 T17784 T17786 arg2Of miR-155,shown
R11690 T17784 T17788 arg1Of miR-155,promote
R11691 T17786 T17785 arg2Of shown,was
R11692 T17786 T17804 arg1Of shown,46
R11693 T17788 T17786 arg3Of promote,shown
R11694 T17788 T17787 arg1Of promote,to
R11695 T17788 T17795 arg1Of promote,in
R11696 T17790 T17788 arg2Of production,promote
R11697 T17790 T17789 arg1Of production,TNF
R11698 T17790 T17791 arg1Of production,","
R11699 T17794 T17791 arg2Of process,","
R11700 T17794 T17792 arg1Of process,a
R11701 T17794 T17793 arg1Of process,key
R11702 T17797 T17795 arg2Of pathogenesis,in
R11703 T17797 T17796 arg1Of pathogenesis,the
R11704 T17797 T17798 arg1Of pathogenesis,of
R11705 T17799 T17798 arg2Of RA,of
R11706 T17801 T17800 arg2Of 87,[
R11707 T17802 T17800 arg3Of ],[
R11708 T17803 T17795 arg3Of . miR-1,in
R11709 T17803 T17800 arg1Of . miR-1,[
R11710 T17804 T17816 arg1Of 46 ,mma
R11711 T17805 T17806 arg1Of and miR,-15
R11712 T17805 T17808 arg1Of and miR,re
R11713 T17808 T17804 arg2Of re,46
R11714 T17808 T17806 arg2Of re,-15
R11715 T17808 T17807 arg1Of re,5 may the
R11716 T17810 T17809 arg1Of mportant,fore be i
R11717 T17811 T17808 arg2Of negative r,re
R11718 T17811 T17810 arg1Of negative r,mportant
R11719 T17811 T17812 arg1Of negative r,eg
R11720 T17811 T17814 arg1Of negative r,nf
R11721 T17813 T17812 arg2Of ulators of i,eg
R11722 T17815 T17814 arg2Of la,nf
R11723 T17816 T17782 arg1Of mma,Moreover
R11724 T17816 T17783 arg1Of mma,","
R11725 T17818 T17817 arg1Of in RA and,tion
R11726 T17818 T17819 arg1Of in RA and,the
R11727 T17818 T17825 arg1Of in RA and,t
R11728 T17818 T17826 arg1Of in RA and,of new trea
R11729 T17821 T17819 arg2Of potential f,the
R11730 T17821 T17820 arg1Of potential f,ir
R11731 T17821 T17822 arg1Of potential f,or
R11732 T17824 T17822 arg2Of developmen,or
R11733 T17824 T17823 arg1Of developmen,the
R11734 T17825 T17816 arg2Of t ,mma
R11735 T17826 T17825 arg2Of of new trea,t

GO-BP

Id Subject Object Predicate Lexical cue
T17987 171-183 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T17984 218-229 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T17997 76-88 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T17996 39-53 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF production

sentences

Id Subject Object Predicate Lexical cue
T17444 0-263 Sentence denotes Moreover, miR-155 was shown to promote TNF production, a key process in the pathogenesis of RA [87]. miR-146 and miR-155 may therefore be important negative regulators of inflammation in RA and their potential for the development of new treatments is substantial.
T181 0-263 Sentence denotes Moreover, miR-155 was shown to promote TNF production, a key process in the pathogenesis of RA [87]. miR-146 and miR-155 may therefore be important negative regulators of inflammation in RA and their potential for the development of new treatments is substantial.

simple1

Id Subject Object Predicate Lexical cue
T18029 113-120 Protein denotes miR-155
T18028 39-42 Protein denotes TNF
T18027 10-17 Protein denotes miR-155

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T18762 113-120 Protein denotes miR-155
T18761 39-42 Protein denotes TNF
T18760 10-17 Protein denotes miR-155
T18780 43-53 Gene_expression denotes production
T18779 31-38 Positive_regulation denotes promote
R12440 T18761 T18780 themeOf TNF,production
R12448 T18780 T18779 themeOf production,promote

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18546 31-38 Positive_regulation denotes promote
T18545 43-53 Gene_expression denotes production
T18529 113-120 Protein denotes miR-155
T18528 39-42 Protein denotes TNF
T18527 10-17 Protein denotes miR-155
R12364 T18528 T18545 themeOf TNF,production
R12371 T18545 T18546 themeOf production,promote

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18851 113-120 Protein denotes miR-155
T18826 10-17 Protein denotes miR-155
T18824 101-108 Entity denotes miR-146
T18807 187-189 Protein denotes RA
T18789 92-94 Protein denotes RA

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18622 31-38 Positive_regulation denotes promote
T18621 43-53 Gene_expression denotes production
T18620 39-42 Protein denotes TNF
R12402 T18620 T18621 themeOf TNF,production
R12403 T18621 T18622 themeOf production,promote

test3

Id Subject Object Predicate Lexical cue
T17417 113-120 Protein denotes miR-155
T17416 43-53 Gene_expression denotes production
T17415 39-42 Protein denotes TNF
T17414 31-38 Positive_regulation denotes promote
T17413 10-17 Protein denotes miR-155
T17382 113-120 Protein denotes miR-155
T17381 39-42 Protein denotes TNF
T17380 10-17 Protein denotes miR-155
R11393 T17413 T17414 causeOf miR-155,promote
R11394 T17415 T17416 themeOf TNF,production
R11395 T17416 T17414 themeOf production,promote