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PMC:3218875 / 31029-31312 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T17351 240-249 Gene_expression denotes producing
T17350 208-221 Gene_expression denotes overexpressed
T17349 38-47 Gene_expression denotes expressed
T17331 234-239 Protein denotes IL-17
T17330 225-228 Protein denotes CD4
T17329 191-199 Protein denotes miR-146a
T17328 26-33 Protein denotes miR-155
R11377 T17328 T17349 themeOf miR-155,expressed
R11378 T17329 T17350 themeOf miR-146a,overexpressed
R11379 T17331 T17351 themeOf IL-17,producing

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18239 282-283 . denotes .
T18238 281-282 NNP denotes ]
T18237 276-281 CD denotes 84,85
T18236 275-276 NNP denotes [
T18235 266-274 NNS denotes patients
T18234 263-265 NNP denotes RA
T18206 119-120 , denotes ,
T18205 118-119 NNP denotes ]
T18204 113-118 CD denotes 81,82
T18203 112-113 NNP denotes [
T18202 105-111 NN denotes tissue
T18201 96-104 JJ denotes synovial
T18200 92-95 CC denotes and
T18199 80-91 NNS denotes fibroblasts
T18198 71-79 JJ denotes synovial
T18197 68-70 NNP denotes RA
T18196 65-67 IN denotes in
T18195 58-64 NNS denotes levels
T18194 51-57 JJR denotes higher
T18193 48-50 IN denotes at
T18192 38-47 VBN denotes expressed
T18191 34-37 VBP denotes are
T18190 26-33 NNP denotes miR-155
T18189 22-25 CC denotes and
T18188 14-21 NNP denotes miR-146
T18187 9-13 DT denotes both
T18186 7-8 , denotes ,
T18185 0-7 RB denotes Notably
T18233 258-262 IN denotes from
T18232 252-257 NNS denotes cells
T18231 250-251 NN denotes T
T18230 234-249 JJ denotes IL-17-producing
T18229 230-233 CC denotes and
T18228 228-229 NNP denotes +
T18227 225-228 NNP denotes CD4
T18226 222-224 IN denotes in
T18225 208-221 VBN denotes overexpressed
T18224 203-207 RB denotes also
T18223 200-202 VBZ denotes is
T18222 191-199 NN denotes miR-146a
T18221 189-190 . denotes .
T18220 188-189 NNP denotes ]
T18219 186-188 CD denotes 83
T18218 185-186 NNP denotes [
T18217 176-184 NNS denotes patients
T18216 173-175 NNP denotes RA
T18215 170-172 IN denotes of
T18214 164-169 NNS denotes cells
T18213 152-163 NN denotes mononuclear
T18212 146-151 NN denotes blood
T18211 135-145 JJ denotes peripheral
T18210 132-134 IN denotes in
T18209 129-131 IN denotes as
T18208 124-128 RB denotes well
T18207 121-123 RB denotes as
R12041 T18185 T18192 advmod Notably,expressed
R12042 T18186 T18192 punct ",",expressed
R12043 T18187 T18188 preconj both,miR-146
R12044 T18188 T18192 nsubjpass miR-146,expressed
R12045 T18189 T18188 cc and,miR-146
R12046 T18190 T18188 conj miR-155,miR-146
R12047 T18191 T18192 auxpass are,expressed
R12048 T18192 T18192 ROOT expressed,expressed
R12049 T18193 T18192 prep at,expressed
R12050 T18194 T18195 amod higher,levels
R12051 T18195 T18193 pobj levels,at
R12052 T18196 T18195 prep in,levels
R12053 T18197 T18196 pobj RA,in
R12054 T18198 T18199 amod synovial,fibroblasts
R12055 T18199 T18195 conj fibroblasts,levels
R12056 T18200 T18199 cc and,fibroblasts
R12057 T18201 T18202 amod synovial,tissue
R12058 T18202 T18205 compound tissue,]
R12059 T18203 T18205 compound [,]
R12060 T18204 T18205 compound "81,82",]
R12061 T18205 T18199 conj ],fibroblasts
R12062 T18206 T18205 punct ",",]
R12063 T18207 T18209 advmod as,as
R12064 T18208 T18209 advmod well,as
R12065 T18209 T18193 cc as,at
R12066 T18210 T18209 prep in,as
R12067 T18211 T18214 amod peripheral,cells
R12068 T18212 T18213 compound blood,mononuclear
R12069 T18213 T18214 compound mononuclear,cells
R12070 T18214 T18210 pobj cells,in
R12071 T18215 T18214 prep of,cells
R12072 T18216 T18217 compound RA,patients
R12073 T18217 T18215 pobj patients,of
R12074 T18218 T18220 nmod [,]
R12075 T18219 T18220 nummod 83,]
R12076 T18220 T18192 dobj ],expressed
R12077 T18221 T18192 punct .,expressed
R12078 T18222 T18225 nsubjpass miR-146a,overexpressed
R12079 T18223 T18225 auxpass is,overexpressed
R12080 T18224 T18225 advmod also,overexpressed
R12081 T18225 T18225 ROOT overexpressed,overexpressed
R12082 T18226 T18225 prep in,overexpressed
R12083 T18227 T18228 compound CD4,+
R12084 T18228 T18226 pobj +,in
R12085 T18229 T18228 cc and,+
R12086 T18230 T18228 conj IL-17-producing,+
R12087 T18231 T18232 compound T,cells
R12088 T18232 T18225 conj cells,overexpressed
R12089 T18233 T18232 prep from,cells
R12090 T18234 T18235 compound RA,patients
R12091 T18235 T18233 pobj patients,from
R12092 T18236 T18237 quantmod [,"84,85"
R12093 T18237 T18238 nummod "84,85",]
R12094 T18238 T18232 conj ],cells
R12095 T18239 T18225 punct .,overexpressed

DLUT931

Id Subject Object Predicate Lexical cue
T18584 240-249 Gene_expression denotes producing
T18583 208-221 Gene_expression denotes overexpressed
T18582 38-47 Gene_expression denotes expressed
T18564 191-199 Protein denotes miR-146a
T18563 26-33 Protein denotes miR-155
T18566 234-239 Protein denotes IL-17
T18565 225-228 Protein denotes CD4
R12375 T18563 T18582 themeOf miR-155,expressed
R12376 T18564 T18583 themeOf miR-146a,overexpressed
R12377 T18565 T18584 themeOf CD4,producing
R12378 T18566 T18584 themeOf IL-17,producing

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18507 234-239 http://www.uniprot.org/uniprot/Q16552 denotes IL-17
T18506 225-228 http://www.uniprot.org/uniprot/P01730 denotes CD4

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T17528 234-239 Protein denotes IL-17
T17527 225-228 Protein denotes CD4
T17526 191-199 Protein denotes miR-146a
T17525 26-33 Protein denotes miR-155

2_test

Id Subject Object Predicate Lexical cue
21639951-18383392-4289515 113-115 18383392 denotes 81
21639951-18438844-4289516 116-118 18438844 denotes 82
21639951-18759964-4289517 186-188 18759964 denotes 83
21639951-20459811-4289518 276-278 20459811 denotes 84

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17730 269-270 -RRB- denotes i
T17729 264-269 CD denotes A pat
T17728 263-264 -LRB- denotes R
T17727 254-262 NN denotes lls from
T17726 252-254 NN denotes ce
T17725 247-251 IN denotes ng T
T17724 242-247 NN denotes oduci
T17723 241-242 NN denotes r
T17722 226-241 JJ denotes D4+ and IL-17-p
T17721 223-226 CC denotes n C
T17720 219-223 JJ denotes ed i
T17719 217-219 IN denotes ss
T17718 204-217 VB denotes lso overexpre
T17717 200-204 RB denotes is a
T17716 197-199 VB denotes 6a
T17715 189-197 NN denotes . miR-14
T17714 188-189 -RRB- denotes ]
T17713 186-188 CD denotes 83
T17712 185-186 -LRB- denotes [
T17711 176-184 NN denotes patients
T17710 173-175 NN denotes RA
T17709 170-172 IN denotes of
T17708 164-169 NN denotes cells
T17707 152-163 JJ denotes mononuclear
T17706 146-151 NN denotes blood
T17705 135-145 JJ denotes peripheral
T17704 132-134 IN denotes in
T17703 129-131 IN denotes as
T17702 124-128 RB denotes well
T17701 121-123 RB denotes as
T17700 119-120 -COMMA- denotes ,
T17699 118-119 -RRB- denotes ]
T17698 113-118 CD denotes 81,82
T17697 112-113 -LRB- denotes [
T17696 105-111 NN denotes tissue
T17695 96-104 JJ denotes synovial
T17694 92-95 CC denotes and
T17693 80-91 NN denotes fibroblasts
T17692 71-79 JJ denotes synovial
T17691 68-70 NN denotes RA
T17690 65-67 IN denotes in
T17689 58-64 NN denotes levels
T17688 51-57 JJ denotes higher
T17687 48-50 IN denotes at
T17686 38-47 VB denotes expressed
T17685 34-37 VB denotes are
T17684 26-33 NN denotes miR-155
T17683 22-25 CC denotes and
T17682 14-21 NN denotes miR-146
T17681 9-13 CC denotes both
T17680 7-8 -COMMA- denotes ,
T17679 0-7 RB denotes Notably
R11577 T17682 T17683 arg1Of miR-146,and
R11578 T17683 T17681 arg1Of and,both
R11579 T17683 T17685 arg1Of and,are
R11580 T17683 T17686 arg2Of and,expressed
R11581 T17684 T17683 arg2Of miR-155,and
R11582 T17686 T17685 arg2Of expressed,are
R11583 T17686 T17687 arg1Of expressed,at
R11584 T17686 T17704 arg1Of expressed,in
R11585 T17686 T17712 arg1Of expressed,[
R11586 T17687 T17703 arg1Of at,as
R11587 T17689 T17687 arg2Of levels,at
R11588 T17689 T17688 arg1Of levels,higher
R11589 T17689 T17690 arg1Of levels,in
R11590 T17693 T17691 arg1Of fibroblasts,RA
R11591 T17693 T17692 arg1Of fibroblasts,synovial
R11592 T17693 T17694 arg1Of fibroblasts,and
R11593 T17694 T17690 arg2Of and,in
R11594 T17696 T17694 arg2Of tissue,and
R11595 T17696 T17695 arg1Of tissue,synovial
R11596 T17696 T17697 arg1Of tissue,[
R11597 T17698 T17697 arg2Of "81,82",[
R11598 T17699 T17697 arg3Of ],[
R11599 T17703 T17700 arg1Of as,","
R11600 T17703 T17701 arg1Of as,as
R11601 T17703 T17702 arg1Of as,well
R11602 T17704 T17703 arg2Of in,as
R11603 T17708 T17704 arg2Of cells,in
R11604 T17708 T17705 arg1Of cells,peripheral
R11605 T17708 T17706 arg1Of cells,blood
R11606 T17708 T17707 arg1Of cells,mononuclear
R11607 T17708 T17709 arg1Of cells,of
R11608 T17711 T17709 arg2Of patients,of
R11609 T17711 T17710 arg1Of patients,RA
R11610 T17713 T17712 arg2Of 83,[
R11611 T17714 T17712 arg3Of ],[
R11612 T17715 T17716 arg1Of . miR-14,6a
R11613 T17715 T17718 arg2Of . miR-14,lso overexpre
R11614 T17718 T17679 arg1Of lso overexpre,Notably
R11615 T17718 T17680 arg1Of lso overexpre,","
R11616 T17718 T17685 modOf lso overexpre,are
R11617 T17718 T17716 arg2Of lso overexpre,6a
R11618 T17718 T17717 arg1Of lso overexpre,is a
R11619 T17718 T17719 arg1Of lso overexpre,ss
R11620 T17720 T17721 arg1Of ed i,n C
R11621 T17722 T17721 arg2Of D4+ and IL-17-p,n C
R11622 T17724 T17719 arg2Of oduci,ss
R11623 T17724 T17720 arg1Of oduci,ed i
R11624 T17724 T17722 arg1Of oduci,D4+ and IL-17-p
R11625 T17724 T17723 arg1Of oduci,r
R11626 T17724 T17725 arg1Of oduci,ng T
R11627 T17727 T17725 arg2Of lls from,ng T
R11628 T17727 T17726 arg1Of lls from,ce
R11629 T17727 T17728 arg1Of lls from,R
R11630 T17729 T17728 arg2Of A pat,R
R11631 T17730 T17728 arg3Of i,R

UBERON-AE

Id Subject Object Predicate Lexical cue
T17435 146-151 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T17433 105-111 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

GO-MF

Id Subject Object Predicate Lexical cue
T18004 234-239 http://purl.obolibrary.org/obo/GO_0030367 denotes IL-17

GO-CC

Id Subject Object Predicate Lexical cue
T18008 252-257 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18007 164-169 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T17442 0-283 Sentence denotes Notably, both miR-146 and miR-155 are expressed at higher levels in RA synovial fibroblasts and synovial tissue [81,82], as well as in peripheral blood mononuclear cells of RA patients [83]. miR-146a is also overexpressed in CD4+ and IL-17-producing T cells from RA patients [84,85].
T179 0-283 Sentence denotes Notably, both miR-146 and miR-155 are expressed at higher levels in RA synovial fibroblasts and synovial tissue [81,82], as well as in peripheral blood mononuclear cells of RA patients [83]. miR-146a is also overexpressed in CD4+ and IL-17-producing T cells from RA patients [84,85].

simple1

Id Subject Object Predicate Lexical cue
T18024 234-239 Protein denotes IL-17
T18023 225-228 Protein denotes CD4
T18022 191-199 Protein denotes miR-146a
T18021 26-33 Protein denotes miR-155

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T18774 208-221 Gene_expression denotes overexpressed
T18773 38-47 Gene_expression denotes expressed
T18757 234-239 Protein denotes IL-17
T18756 225-228 Protein denotes CD4
T18755 191-199 Protein denotes miR-146a
T18754 26-33 Protein denotes miR-155
T18776 240-249 Gene_expression denotes producing
T18775 208-221 Positive_regulation denotes overexpressed
R12436 T18754 T18773 themeOf miR-155,expressed
R12437 T18755 T18774 themeOf miR-146a,overexpressed
R12438 T18757 T18776 themeOf IL-17,producing
R12446 T18774 T18775 themeOf overexpressed,overexpressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18542 240-249 Gene_expression denotes producing
T18541 208-221 Gene_expression denotes overexpressed
T18540 38-47 Gene_expression denotes expressed
T18524 234-239 Protein denotes IL-17
T18523 225-228 Protein denotes CD4
T18522 191-199 Protein denotes miR-146a
T18521 26-33 Protein denotes miR-155
R12359 T18521 T18540 themeOf miR-155,expressed
R12360 T18522 T18541 themeOf miR-146a,overexpressed
R12361 T18524 T18542 themeOf IL-17,producing

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18867 0-91 Gene_expression denotes Notably, both miR-146 and miR-155 are expressed at higher levels in RA synovial fibroblasts
T18863 191-282 Positive_regulation denotes miR-146a is also overexpressed in CD4+ and IL-17-producing T cells from RA patients [84,85]
T18862 191-282 Gene_expression denotes miR-146a is also overexpressed in CD4+ and IL-17-producing T cells from RA patients [84,85]
T18845 191-199 Protein denotes miR-146a
T18844 263-265 Protein denotes RA
T18833 26-33 Protein denotes miR-155
T18825 225-282 Entity denotes CD4+ and IL-17-producing T cells from RA patients [84,85]
T18812 68-91 Entity denotes RA synovial fibroblasts
T18806 14-21 Entity denotes miR-146
T18805 68-70 Protein denotes RA
T18791 135-189 Entity denotes peripheral blood mononuclear cells of RA patients [83]
T18787 173-175 Protein denotes RA
R12454 T18833 T18867 themeOf miR-155,"Notably, both miR-146 and miR-155 are expressed at higher levels in RA synovial fibroblasts"
R12459 T18845 T18862 themeOf miR-146a,"miR-146a is also overexpressed in CD4+ and IL-17-producing T cells from RA patients [84,85]"
R12460 T18845 T18863 themeOf miR-146a,"miR-146a is also overexpressed in CD4+ and IL-17-producing T cells from RA patients [84,85]"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18615 234-249 Gene_expression denotes IL-17-producing
T18614 208-221 Positive_regulation denotes overexpressed
T18613 225-229 Protein denotes CD4+
T18612 191-199 Protein denotes miR-146a
T18611 38-47 Gene_expression denotes expressed
T18610 38-47 Gene_expression denotes expressed
T18609 26-33 Protein denotes miR-155
T18608 14-21 Protein denotes miR-146
R12396 T18608 T18610 themeOf miR-146,expressed
R12397 T18609 T18611 themeOf miR-155,expressed
R12398 T18612 T18614 themeOf miR-146a,overexpressed
R12399 T18613 T18615 themeOf CD4+,IL-17-producing

test3

Id Subject Object Predicate Lexical cue
T17410 240-249 Gene_expression denotes producing
T17409 234-239 Protein denotes IL-17
T17408 225-228 Protein denotes CD4
T17407 191-199 Protein denotes miR-146a
T17406 26-33 Protein denotes miR-155
T17377 234-239 Protein denotes IL-17
T17376 225-228 Protein denotes CD4
T17375 191-199 Protein denotes miR-146a
T17374 26-33 Protein denotes miR-155
R11392 T17409 T17410 themeOf IL-17,producing