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PMC:3218875 / 30920-31028 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T17348 32-38 Binding denotes target
T17327 95-99 Protein denotes RIP1
T17326 86-90 Protein denotes IKKε
T17325 11-18 Protein denotes miR-155
R11374 T17325 T17348 themeOf miR-155,target
R11375 T17326 T17348 themeOf IKKε,target
R11376 T17327 T17348 themeOf RIP1,target

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18184 107-108 . denotes .
T18183 106-107 NNP denotes ]
T18182 101-106 CD denotes 79,80
T18181 100-101 NNP denotes [
T18180 95-99 NNP denotes RIP1
T18179 91-94 CC denotes and
T18178 86-90 NNP denotes IKKε
T18177 76-85 NNS denotes molecules
T18176 65-75 VBG denotes signalling
T18175 59-64 NN denotes NF-κB
T18174 55-58 DT denotes the
T18173 51-54 IN denotes for
T18172 39-50 NNS denotes transcripts
T18171 32-38 VB denotes target
T18170 29-31 TO denotes to
T18169 23-28 VBN denotes shown
T18168 19-22 VBD denotes was
T18167 11-18 NN denotes miR-155
T18166 9-10 , denotes ,
T18165 0-9 RB denotes Similarly
R12021 T18165 T18169 advmod Similarly,shown
R12022 T18166 T18169 punct ",",shown
R12023 T18167 T18169 nsubjpass miR-155,shown
R12024 T18168 T18169 auxpass was,shown
R12025 T18169 T18169 ROOT shown,shown
R12026 T18170 T18171 aux to,target
R12027 T18171 T18169 xcomp target,shown
R12028 T18172 T18171 dobj transcripts,target
R12029 T18173 T18172 prep for,transcripts
R12030 T18174 T18175 det the,NF-κB
R12031 T18175 T18176 nsubj NF-κB,signalling
R12032 T18176 T18173 pcomp signalling,for
R12033 T18177 T18176 dobj molecules,signalling
R12034 T18178 T18176 dobj IKKε,signalling
R12035 T18179 T18178 cc and,IKKε
R12036 T18180 T18181 compound RIP1,[
R12037 T18181 T18178 conj [,IKKε
R12038 T18182 T18183 compound "79,80",]
R12039 T18183 T18178 conj ],IKKε
R12040 T18184 T18169 punct .,shown

DLUT931

Id Subject Object Predicate Lexical cue
T18562 95-99 Protein denotes RIP1
T18561 86-90 Protein denotes IKKε
T18560 11-18 Protein denotes miR-155

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18505 95-99 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T17524 95-99 Protein denotes RIP1
T17523 86-90 Protein denotes IKKε
T17522 11-18 Protein denotes miR-155

2_test

Id Subject Object Predicate Lexical cue
21639951-17242365-4289513 101-103 17242365 denotes 79
21639951-17911593-4289514 104-106 17911593 denotes 80

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17678 106-107 -RRB- denotes ]
T17677 101-106 CD denotes 79,80
T17676 100-101 -LRB- denotes [
T17675 95-99 NN denotes RIP1
T17674 91-94 CC denotes and
T17673 86-90 NN denotes IKKε
T17672 76-85 NN denotes molecules
T17671 65-75 NN denotes signalling
T17670 59-64 NN denotes NF-κB
T17669 55-58 DT denotes the
T17668 51-54 IN denotes for
T17667 39-50 NN denotes transcripts
T17666 32-38 NN denotes target
T17665 29-31 TO denotes to
T17664 23-28 VB denotes shown
T17663 19-22 VB denotes was
T17662 11-18 NN denotes miR-155
T17661 9-10 -COMMA- denotes ,
T17660 0-9 RB denotes Similarly
R11558 T17662 T17663 arg1Of miR-155,was
R11559 T17662 T17664 arg2Of miR-155,shown
R11560 T17664 T17660 arg1Of shown,Similarly
R11561 T17664 T17661 arg1Of shown,","
R11562 T17664 T17663 arg2Of shown,was
R11563 T17664 T17665 arg1Of shown,to
R11564 T17664 T17668 arg1Of shown,for
R11565 T17667 T17665 arg2Of transcripts,to
R11566 T17667 T17666 arg1Of transcripts,target
R11567 T17673 T17669 arg1Of IKKε,the
R11568 T17673 T17670 arg1Of IKKε,NF-κB
R11569 T17673 T17671 arg1Of IKKε,signalling
R11570 T17673 T17672 arg1Of IKKε,molecules
R11571 T17673 T17674 arg1Of IKKε,and
R11572 T17674 T17668 arg2Of and,for
R11573 T17675 T17674 arg2Of RIP1,and
R11574 T17675 T17676 arg1Of RIP1,[
R11575 T17677 T17676 arg2Of "79,80",[
R11576 T17678 T17676 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T17995 59-75 http://purl.obolibrary.org/obo/GO_0038061 denotes NF-κB signalling
T17993 65-75 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling

sentences

Id Subject Object Predicate Lexical cue
T17441 0-108 Sentence denotes Similarly, miR-155 was shown to target transcripts for the NF-κB signalling molecules IKKε and RIP1 [79,80].
T178 0-108 Sentence denotes Similarly, miR-155 was shown to target transcripts for the NF-κB signalling molecules IKKε and RIP1 [79,80].

simple1

Id Subject Object Predicate Lexical cue
T18020 95-99 Protein denotes RIP1
T18019 86-90 Protein denotes IKKε
T18018 11-18 Protein denotes miR-155

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T18753 95-99 Protein denotes RIP1
T18752 86-90 Protein denotes IKKε
T18751 11-18 Protein denotes miR-155

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18520 95-99 Protein denotes RIP1
T18519 86-90 Protein denotes IKKε
T18518 11-18 Protein denotes miR-155

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18834 55-90 Protein denotes the NF-κB signalling molecules IKKε
T18830 55-90 Entity denotes the NF-κB signalling molecules IKKε
T18822 39-50 Protein denotes transcripts
T18818 59-64 Protein denotes NF-κB
T18813 11-18 Protein denotes miR-155
T18795 95-99 Protein denotes RIP1

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18607 100-106 Entity denotes [79,80
T18606 76-99 Protein denotes molecules IKKε and RIP1
T18605 59-64 Protein denotes NF-κB
R12394 T18607 T18605 SiteParent "[79,80",NF-κB
R12395 T18607 T18606 SiteParent "[79,80",molecules IKKε and RIP1

test3

Id Subject Object Predicate Lexical cue
T17405 95-99 Protein denotes RIP1
T17404 86-90 Protein denotes IKKε
T17403 11-18 Protein denotes miR-155
T17373 95-99 Protein denotes RIP1
T17372 86-90 Protein denotes IKKε
T17371 11-18 Protein denotes miR-155