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PMC:3218875 / 30758-30919 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T17324 136-144 Protein denotes miR-146a
T17323 95-100 Protein denotes TRAF6
T17322 85-90 Protein denotes IRAK1
T17321 13-21 Protein denotes miR-146a

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18164 160-161 . denotes .
T18163 159-160 -RRB- denotes )
T18162 158-159 CD denotes 1
T18161 151-157 NNP denotes Figure
T18160 150-151 -LRB- denotes (
T18159 148-149 NNP denotes ]
T18158 146-148 CD denotes 78
T18157 145-146 NNP denotes [
T18156 136-144 JJ denotes miR-146a
T18155 133-135 IN denotes of
T18154 127-132 NNS denotes genes
T18153 120-126 NN denotes target
T18152 117-119 IN denotes as
T18151 106-116 VBN denotes identified
T18150 101-105 VBD denotes were
T18149 95-100 NNP denotes TRAF6
T18148 91-94 CC denotes and
T18147 85-90 NNP denotes IRAK1
T18146 75-84 NNS denotes molecules
T18145 64-74 VBG denotes signalling
T18144 58-63 NN denotes NF-κB
T18143 54-57 DT denotes the
T18142 50-53 CC denotes and
T18141 48-49 , denotes ,
T18140 44-48 NN denotes gene
T18139 28-43 JJ denotes NF-κB-dependent
T18138 25-27 DT denotes an
T18137 22-24 VBZ denotes is
T18136 13-21 NN denotes miR-146a
T18135 11-12 , denotes ,
T18134 3-11 NN denotes addition
T18133 0-2 IN denotes In
R11989 T18133 T18137 prep In,is
R11990 T18134 T18133 pobj addition,In
R11991 T18135 T18137 punct ",",is
R11992 T18136 T18137 nsubj miR-146a,is
R11993 T18137 T18137 ROOT is,is
R11994 T18138 T18140 det an,gene
R11995 T18139 T18140 amod NF-κB-dependent,gene
R11996 T18140 T18137 attr gene,is
R11997 T18141 T18137 punct ",",is
R11998 T18142 T18137 cc and,is
R11999 T18143 T18144 det the,NF-κB
R12000 T18144 T18145 nsubj NF-κB,signalling
R12001 T18145 T18151 advcl signalling,identified
R12002 T18146 T18145 dobj molecules,signalling
R12003 T18147 T18151 nsubjpass IRAK1,identified
R12004 T18148 T18147 cc and,IRAK1
R12005 T18149 T18147 conj TRAF6,IRAK1
R12006 T18150 T18151 auxpass were,identified
R12007 T18151 T18137 conj identified,is
R12008 T18152 T18151 prep as,identified
R12009 T18153 T18154 compound target,genes
R12010 T18154 T18152 pobj genes,as
R12011 T18155 T18154 prep of,genes
R12012 T18156 T18157 compound miR-146a,[
R12013 T18157 T18155 pobj [,of
R12014 T18158 T18159 nummod 78,]
R12015 T18159 T18154 conj ],genes
R12016 T18160 T18161 punct (,Figure
R12017 T18161 T18159 appos Figure,]
R12018 T18162 T18161 nummod 1,Figure
R12019 T18163 T18159 punct ),]
R12020 T18164 T18151 punct .,identified

DLUT931

Id Subject Object Predicate Lexical cue
T18581 28-43 Regulation denotes NF-κB-dependent
T18559 136-144 Protein denotes miR-146a
T18558 95-100 Protein denotes TRAF6
T18557 85-90 Protein denotes IRAK1
T18556 13-21 Protein denotes miR-146a
R12374 T18556 T18581 themeOf miR-146a,NF-κB-dependent

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18504 95-100 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T17520 95-100 Protein denotes TRAF6
T17519 85-90 Protein denotes IRAK1
T17518 13-21 Protein denotes miR-146a
T17521 136-144 Protein denotes miR-146a

2_test

Id Subject Object Predicate Lexical cue
21639951-16885212-4289512 146-148 16885212 denotes 78

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17659 159-160 -RRB- denotes )
T17658 158-159 CD denotes 1
T17657 151-157 NN denotes Figure
T17656 150-151 -LRB- denotes (
T17655 148-149 -RRB- denotes ]
T17654 146-148 CD denotes 78
T17653 145-146 -LRB- denotes [
T17652 136-144 NN denotes miR-146a
T17651 133-135 IN denotes of
T17650 127-132 NN denotes genes
T17649 120-126 NN denotes target
T17648 117-119 IN denotes as
T17647 106-116 VB denotes identified
T17646 101-105 VB denotes were
T17645 95-100 NN denotes TRAF6
T17644 91-94 CC denotes and
T17643 85-90 NN denotes IRAK1
T17642 75-84 NN denotes molecules
T17641 64-74 NN denotes signalling
T17640 58-63 NN denotes NF-κB
T17639 54-57 DT denotes the
T17638 50-53 CC denotes and
T17637 48-49 -COMMA- denotes ,
T17636 44-48 NN denotes gene
T17635 28-43 JJ denotes NF-κB-dependent
T17634 25-27 DT denotes an
T17633 22-24 VB denotes is
T17632 13-21 NN denotes miR-146a
T17631 11-12 -COMMA- denotes ,
T17630 3-11 NN denotes addition
T17629 0-2 IN denotes In
R11527 T17630 T17629 arg2Of addition,In
R11528 T17632 T17633 arg1Of miR-146a,is
R11529 T17633 T17629 arg1Of is,In
R11530 T17633 T17631 arg1Of is,","
R11531 T17633 T17638 arg1Of is,and
R11532 T17636 T17633 arg2Of gene,is
R11533 T17636 T17634 arg1Of gene,an
R11534 T17636 T17635 arg1Of gene,NF-κB-dependent
R11535 T17638 T17637 arg1Of and,","
R11536 T17643 T17644 arg1Of IRAK1,and
R11537 T17644 T17639 arg1Of and,the
R11538 T17644 T17640 arg1Of and,NF-κB
R11539 T17644 T17641 arg1Of and,signalling
R11540 T17644 T17642 arg1Of and,molecules
R11541 T17644 T17646 arg1Of and,were
R11542 T17644 T17647 arg2Of and,identified
R11543 T17645 T17644 arg2Of TRAF6,and
R11544 T17647 T17638 arg2Of identified,and
R11545 T17647 T17646 arg2Of identified,were
R11546 T17647 T17648 arg1Of identified,as
R11547 T17647 T17653 arg1Of identified,[
R11548 T17647 T17656 arg1Of identified,(
R11549 T17650 T17648 arg2Of genes,as
R11550 T17650 T17649 arg1Of genes,target
R11551 T17650 T17651 arg1Of genes,of
R11552 T17652 T17651 arg2Of miR-146a,of
R11553 T17654 T17653 arg2Of 78,[
R11554 T17655 T17653 arg3Of ],[
R11555 T17657 T17656 arg2Of Figure,(
R11556 T17657 T17658 arg1Of Figure,1
R11557 T17659 T17656 arg3Of ),(

GO-BP

Id Subject Object Predicate Lexical cue
T17994 58-74 http://purl.obolibrary.org/obo/GO_0038061 denotes NF-κB signalling
T17992 64-74 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling

sentences

Id Subject Object Predicate Lexical cue
T17440 0-161 Sentence denotes In addition, miR-146a is an NF-κB-dependent gene, and the NF-κB signalling molecules IRAK1 and TRAF6 were identified as target genes of miR-146a [78] (Figure 1).
T177 0-161 Sentence denotes In addition, miR-146a is an NF-κB-dependent gene, and the NF-κB signalling molecules IRAK1 and TRAF6 were identified as target genes of miR-146a [78] (Figure 1).

simple1

Id Subject Object Predicate Lexical cue
T18017 136-144 Protein denotes miR-146a
T18016 95-100 Protein denotes TRAF6
T18015 85-90 Protein denotes IRAK1
T18014 13-21 Protein denotes miR-146a

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T18772 28-43 Regulation denotes NF-κB-dependent
T18750 136-144 Protein denotes miR-146a
T18749 95-100 Protein denotes TRAF6
T18748 85-90 Protein denotes IRAK1
T18747 13-21 Protein denotes miR-146a
R12435 T18747 T18772 themeOf miR-146a,NF-κB-dependent

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18517 136-144 Protein denotes miR-146a
T18516 95-100 Protein denotes TRAF6
T18515 85-90 Protein denotes IRAK1
T18514 13-21 Protein denotes miR-146a

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18841 28-43 Protein denotes NF-κB-dependent
T18838 25-48 Protein denotes an NF-κB-dependent gene
T18836 54-90 Entity denotes the NF-κB signalling molecules IRAK1
T18831 120-160 Protein denotes target genes of miR-146a [78] (Figure 1)
T18829 95-100 Protein denotes TRAF6
T18828 136-149 Protein denotes miR-146a [78]
T18815 54-90 Protein denotes the NF-κB signalling molecules IRAK1
T18796 13-21 Protein denotes miR-146a
T18794 58-63 Protein denotes NF-κB

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18604 136-144 Protein denotes miR-146a
T18603 95-100 Protein denotes TRAF6
T18602 85-90 Protein denotes IRAK1
T18601 58-63 Protein denotes NF-κB
T18600 28-33 Protein denotes NF-κB
T18599 13-21 Protein denotes miR-146a

test3

Id Subject Object Predicate Lexical cue
T17402 136-144 Protein denotes miR-146a
T17401 95-100 Protein denotes TRAF6
T17400 85-90 Protein denotes IRAK1
T17399 13-21 Protein denotes miR-146a
T17370 136-144 Protein denotes miR-146a
T17369 95-100 Protein denotes TRAF6
T17368 85-90 Protein denotes IRAK1
T17367 13-21 Protein denotes miR-146a