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PMC:3218875 / 30228-30574 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T17346 216-220 Binding denotes bind

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18097 345-346 . denotes .
T18096 344-345 NNP denotes ]
T18095 342-344 CD denotes 77
T18051 77-82 NN denotes class
T18050 75-76 DT denotes a
T18049 65-74 VB denotes represent
T18048 61-64 CC denotes and
T18047 50-60 NN denotes expression
T18046 45-49 NN denotes gene
T18045 42-44 IN denotes of
T18044 31-41 NNS denotes regulators
T18043 20-30 VBN denotes discovered
T18042 11-19 RB denotes recently
T18041 7-10 VBP denotes are
T18040 0-6 NNS denotes miRNAs
T18094 341-342 NNP denotes [
T18093 329-340 NN denotes degradation
T18092 324-328 NNP denotes mRNA
T18091 317-323 NN denotes target
T18090 314-316 IN denotes of
T18089 304-313 NN denotes promotion
T18088 300-303 DT denotes the
T18087 296-299 CC denotes and
T18086 285-295 NN denotes expression
T18085 277-284 NN denotes protein
T18084 274-276 IN denotes of
T18083 263-273 NN denotes repression
T18082 259-262 DT denotes the
T18081 256-258 TO denotes to
T18080 248-255 VBG denotes leading
T18079 242-247 NNS denotes mRNAs
T18078 235-241 NN denotes target
T18077 232-234 IN denotes of
T18076 228-231 NNP denotes UTR
T18075 227-228 : denotes -
T18074 226-227 '' denotes '
T18073 225-226 CD denotes 3
T18072 221-224 DT denotes the
T18071 216-220 NN denotes bind
T18070 211-215 PRP denotes They
T18069 209-210 . denotes .
T18068 197-209 NN denotes inflammation
T18067 193-196 CC denotes and
T18066 183-192 NNS denotes responses
T18065 176-182 JJ denotes immune
T18064 166-175 VBG denotes including
T18063 164-165 , denotes ,
T18062 155-164 NNS denotes processes
T18061 141-154 JJ denotes developmental
T18060 137-140 CC denotes and
T18059 128-136 JJ denotes cellular
T18058 123-127 JJ denotes many
T18057 120-122 IN denotes in
T18056 110-119 JJ denotes essential
T18055 100-109 NNS denotes molecules
T18054 96-99 NNP denotes RNA
T18053 86-95 VBG denotes noncoding
T18052 83-85 IN denotes of
R11896 T18040 T18043 nsubjpass miRNAs,discovered
R11897 T18041 T18043 auxpass are,discovered
R11898 T18042 T18043 advmod recently,discovered
R11899 T18043 T18043 ROOT discovered,discovered
R11900 T18044 T18043 dobj regulators,discovered
R11901 T18045 T18044 prep of,regulators
R11902 T18046 T18047 compound gene,expression
R11903 T18047 T18045 pobj expression,of
R11904 T18048 T18043 cc and,discovered
R11905 T18049 T18043 conj represent,discovered
R11906 T18050 T18051 det a,class
R11907 T18051 T18049 dobj class,represent
R11908 T18052 T18051 prep of,class
R11909 T18053 T18052 pcomp noncoding,of
R11910 T18054 T18055 compound RNA,molecules
R11911 T18055 T18053 dobj molecules,noncoding
R11912 T18056 T18051 amod essential,class
R11913 T18057 T18051 prep in,class
R11914 T18058 T18062 amod many,processes
R11915 T18059 T18062 amod cellular,processes
R11916 T18060 T18059 cc and,cellular
R11917 T18061 T18059 conj developmental,cellular
R11918 T18062 T18057 pobj processes,in
R11919 T18063 T18062 punct ",",processes
R11920 T18064 T18062 prep including,processes
R11921 T18065 T18066 amod immune,responses
R11922 T18066 T18064 pobj responses,including
R11923 T18067 T18066 cc and,responses
R11924 T18068 T18066 conj inflammation,responses
R11925 T18069 T18043 punct .,discovered
R11926 T18070 T18071 nsubj They,bind
R11927 T18071 T18071 ROOT bind,bind
R11928 T18072 T18073 det the,3
R11929 T18073 T18076 meta 3,UTR
R11930 T18074 T18073 punct ',3
R11931 T18075 T18076 punct -,UTR
R11932 T18076 T18071 dobj UTR,bind
R11933 T18077 T18076 prep of,UTR
R11934 T18078 T18079 compound target,mRNAs
R11935 T18079 T18077 pobj mRNAs,of
R11936 T18080 T18079 acl leading,mRNAs
R11937 T18081 T18080 prep to,leading
R11938 T18082 T18083 det the,repression
R11939 T18083 T18081 pobj repression,to
R11940 T18084 T18083 prep of,repression
R11941 T18085 T18086 compound protein,expression
R11942 T18086 T18084 pobj expression,of
R11943 T18087 T18086 cc and,expression
R11944 T18088 T18089 det the,promotion
R11945 T18089 T18086 conj promotion,expression
R11946 T18090 T18089 prep of,promotion
R11947 T18091 T18092 compound target,mRNA
R11948 T18092 T18093 compound mRNA,degradation
R11949 T18093 T18090 pobj degradation,of
R11950 T18094 T18096 nmod [,]
R11951 T18095 T18096 nummod 77,]
R11952 T18096 T18093 appos ],degradation
R11953 T18097 T18071 punct .,bind

2_test

Id Subject Object Predicate Lexical cue
21639951-20098459-4289509 342-344 20098459 denotes 77

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17596 344-345 -RRB- denotes ]
T17595 342-344 CD denotes 77
T17594 341-342 -LRB- denotes [
T17593 329-340 NN denotes degradation
T17592 324-328 NN denotes mRNA
T17591 317-323 NN denotes target
T17590 314-316 IN denotes of
T17589 304-313 NN denotes promotion
T17588 300-303 DT denotes the
T17587 296-299 CC denotes and
T17586 285-295 NN denotes expression
T17585 277-284 NN denotes protein
T17584 274-276 IN denotes of
T17583 263-273 NN denotes repression
T17582 259-262 DT denotes the
T17581 256-258 TO denotes to
T17580 248-255 VB denotes leading
T17579 242-247 NN denotes mRNAs
T17578 235-241 NN denotes target
T17577 232-234 IN denotes of
T17576 225-231 NN denotes 3'-UTR
T17575 221-224 DT denotes the
T17574 216-220 VB denotes bind
T17573 211-215 PRP denotes They
T17572 197-209 NN denotes inflammation
T17571 193-196 CC denotes and
T17570 183-192 NN denotes responses
T17569 176-182 JJ denotes immune
T17568 166-175 VB denotes including
T17567 164-165 -COMMA- denotes ,
T17566 155-164 NN denotes processes
T17565 141-154 JJ denotes developmental
T17564 137-140 CC denotes and
T17563 128-136 JJ denotes cellular
T17562 123-127 JJ denotes many
T17561 120-122 IN denotes in
T17560 110-119 JJ denotes essential
T17559 100-109 NN denotes molecules
T17558 96-99 NN denotes RNA
T17557 86-95 JJ denotes noncoding
T17556 83-85 IN denotes of
T17555 77-82 NN denotes class
T17554 75-76 DT denotes a
T17553 65-74 VB denotes represent
T17552 61-64 CC denotes and
T17551 50-60 NN denotes expression
T17550 45-49 NN denotes gene
T17549 42-44 IN denotes of
T17548 31-41 NN denotes regulators
T17547 20-30 VB denotes discovered
T17546 11-19 RB denotes recently
T17545 7-10 VB denotes are
T17544 0-6 NN denotes miRNAs
R11440 T17544 T17545 arg1Of miRNAs,are
R11441 T17544 T17553 arg1Of miRNAs,represent
R11442 T17545 T17552 arg1Of are,and
R11443 T17547 T17546 arg1Of discovered,recently
R11444 T17548 T17545 arg2Of regulators,are
R11445 T17548 T17547 arg1Of regulators,discovered
R11446 T17548 T17549 arg1Of regulators,of
R11447 T17551 T17549 arg2Of expression,of
R11448 T17551 T17550 arg1Of expression,gene
R11449 T17553 T17552 arg2Of represent,and
R11450 T17555 T17553 arg2Of class,represent
R11451 T17555 T17554 arg1Of class,a
R11452 T17555 T17556 arg1Of class,of
R11453 T17559 T17556 arg2Of molecules,of
R11454 T17559 T17557 arg1Of molecules,noncoding
R11455 T17559 T17558 arg1Of molecules,RNA
R11456 T17559 T17560 arg1Of molecules,essential
R11457 T17560 T17561 arg1Of essential,in
R11458 T17563 T17564 arg1Of cellular,and
R11459 T17565 T17564 arg2Of developmental,and
R11460 T17566 T17561 arg2Of processes,in
R11461 T17566 T17562 arg1Of processes,many
R11462 T17566 T17563 arg1Of processes,cellular
R11463 T17566 T17565 arg1Of processes,developmental
R11464 T17566 T17567 arg1Of processes,","
R11465 T17566 T17568 arg1Of processes,including
R11466 T17570 T17569 arg1Of responses,immune
R11467 T17570 T17571 arg1Of responses,and
R11468 T17571 T17568 arg2Of and,including
R11469 T17572 T17571 arg2Of inflammation,and
R11470 T17573 T17574 arg1Of They,bind
R11471 T17576 T17574 arg2Of 3'-UTR,bind
R11472 T17576 T17575 arg1Of 3'-UTR,the
R11473 T17576 T17577 arg1Of 3'-UTR,of
R11474 T17579 T17577 arg2Of mRNAs,of
R11475 T17579 T17578 arg1Of mRNAs,target
R11476 T17579 T17580 arg1Of mRNAs,leading
R11477 T17580 T17581 arg1Of leading,to
R11478 T17583 T17582 arg1Of repression,the
R11479 T17583 T17584 arg1Of repression,of
R11480 T17583 T17587 arg1Of repression,and
R11481 T17586 T17584 arg2Of expression,of
R11482 T17586 T17585 arg1Of expression,protein
R11483 T17587 T17581 arg2Of and,to
R11484 T17589 T17587 arg2Of promotion,and
R11485 T17589 T17588 arg1Of promotion,the
R11486 T17589 T17590 arg1Of promotion,of
R11487 T17593 T17590 arg2Of degradation,of
R11488 T17593 T17591 arg1Of degradation,target
R11489 T17593 T17592 arg1Of degradation,mRNA
R11490 T17593 T17594 arg1Of degradation,[
R11491 T17595 T17594 arg2Of 77,[
R11492 T17596 T17594 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T17986 197-209 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T17985 176-192 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses
T17983 141-164 http://purl.obolibrary.org/obo/GO_0032502 denotes developmental processes
T17982 128-164 http://purl.obolibrary.org/obo/GO_0048869 denotes cellular and developmental processes
T17981 128-136 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T17980 45-60 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T17990 329-340 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T17989 324-340 http://purl.obolibrary.org/obo/GO_0006402 denotes mRNA degradation

sentences

Id Subject Object Predicate Lexical cue
T17438 211-346 Sentence denotes They bind the 3'-UTR of target mRNAs leading to the repression of protein expression and the promotion of target mRNA degradation [77].
T17437 0-210 Sentence denotes miRNAs are recently discovered regulators of gene expression and represent a class of noncoding RNA molecules essential in many cellular and developmental processes, including immune responses and inflammation.
T174 0-210 Sentence denotes miRNAs are recently discovered regulators of gene expression and represent a class of noncoding RNA molecules essential in many cellular and developmental processes, including immune responses and inflammation.
T175 211-346 Sentence denotes They bind the 3'-UTR of target mRNAs leading to the repression of protein expression and the promotion of target mRNA degradation [77].

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18866 314-340 Protein_catabolism denotes of target mRNA degradation
T18856 300-345 Positive_regulation denotes the promotion of target mRNA degradation [77]
T18853 274-295 Gene_expression denotes of protein expression
T18811 324-328 Protein denotes mRNA
T18804 96-99 Protein denotes RNA
T18797 83-119 Entity denotes of noncoding RNA molecules essential
T18792 235-345 Protein denotes target mRNAs leading to the repression of protein expression and the promotion of target mRNA degradation [77]
T18786 277-284 Protein denotes protein
R12451 T18786 T18853 themeOf protein,of protein expression
R12452 T18811 T18866 themeOf mRNA,of target mRNA degradation
R12464 T18866 T18856 themeOf of target mRNA degradation,the promotion of target mRNA degradation [77]

test3

Id Subject Object Predicate Lexical cue
T17392 216-220 Binding denotes bind