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PMC:3218875 / 29015-29121 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T16309 95-105 Positive_regulation denotes activation
T16308 44-58 Positive_regulation denotes overexpression
T16307 23-32 Positive_regulation denotes inducible
T16306 0-10 Gene_expression denotes Expression
T16292 77-80 Protein denotes TNF
T16291 62-67 Protein denotes TRAF1
T16290 36-39 Protein denotes TNF
T16289 14-19 Protein denotes TRAF1
R10748 T16289 T16306 themeOf TRAF1,Expression
R10749 T16290 T16307 causeOf TNF,inducible
R10750 T16291 T16308 themeOf TRAF1,overexpression
R10758 T16306 T16307 themeOf Expression,inducible

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16822 105-106 . denotes .
T16821 95-105 NN denotes activation
T16820 89-94 NN denotes NF-κB
T16819 77-88 JJ denotes TNF-induced
T16818 68-76 NNS denotes inhibits
T16817 62-67 CD denotes TRAF1
T16816 59-61 IN denotes of
T16815 44-58 NN denotes overexpression
T16814 40-43 CC denotes and
T16813 36-39 NNP denotes TNF
T16812 33-35 IN denotes by
T16811 23-32 JJ denotes inducible
T16810 20-22 VBZ denotes is
T16809 14-19 CD denotes TRAF1
T16808 11-13 IN denotes of
T16807 0-10 NN denotes Expression
R11092 T16814 T16813 cc and,TNF
R11093 T16815 T16813 conj overexpression,TNF
R11094 T16816 T16815 prep of,overexpression
R11095 T16817 T16818 nummod TRAF1,inhibits
R11096 T16818 T16816 pobj inhibits,of
R11097 T16819 T16821 nmod TNF-induced,activation
R11098 T16820 T16821 compound NF-κB,activation
R11099 T16821 T16815 conj activation,overexpression
R11100 T16822 T16810 punct .,is
R11085 T16807 T16810 nsubj Expression,is
R11086 T16808 T16807 prep of,Expression
R11087 T16809 T16808 pobj TRAF1,of
R11088 T16810 T16810 ROOT is,is
R11089 T16811 T16810 acomp inducible,is
R11090 T16812 T16811 prep by,inducible
R11091 T16813 T16812 pobj TNF,by

DLUT931

Id Subject Object Predicate Lexical cue
T17064 44-58 Positive_regulation denotes overexpression
T17063 23-32 Positive_regulation denotes inducible
T17062 0-10 Gene_expression denotes Expression
T17048 77-80 Protein denotes TNF
T17047 62-67 Protein denotes TRAF1
T17046 36-39 Protein denotes TNF
T17045 14-19 Protein denotes TRAF1
R11292 T17045 T17062 themeOf TRAF1,Expression
R11293 T17046 T17063 causeOf TNF,inducible
R11294 T17047 T17064 themeOf TRAF1,overexpression
R11302 T17062 T17063 themeOf Expression,inducible

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17006 77-80 http://www.uniprot.org/uniprot/P01375 denotes TNF
T17005 36-39 http://www.uniprot.org/uniprot/P01375 denotes TNF

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16416 77-80 Protein denotes TNF
T16415 62-67 Protein denotes TRAF1
T16414 36-39 Protein denotes TNF
T16413 14-19 Protein denotes TRAF1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16503 95-105 NN denotes activation
T16502 89-94 NN denotes NF-κB
T16501 77-88 JJ denotes TNF-induced
T16500 68-76 VB denotes inhibits
T16499 62-67 NN denotes TRAF1
T16498 59-61 IN denotes of
T16497 44-58 NN denotes overexpression
T16496 40-43 CC denotes and
T16495 36-39 NN denotes TNF
T16494 33-35 IN denotes by
T16493 23-32 JJ denotes inducible
T16492 20-22 VB denotes is
T16491 14-19 NN denotes TRAF1
T16490 11-13 IN denotes of
T16489 0-10 NN denotes Expression
R10838 T16489 T16490 arg1Of Expression,of
R10839 T16489 T16492 arg1Of Expression,is
R10840 T16489 T16493 arg1Of Expression,inducible
R10841 T16491 T16490 arg2Of TRAF1,of
R10842 T16492 T16496 arg1Of is,and
R10843 T16493 T16492 arg2Of inducible,is
R10844 T16493 T16494 arg1Of inducible,by
R10845 T16495 T16494 arg2Of TNF,by
R10846 T16497 T16498 arg1Of overexpression,of
R10847 T16497 T16500 arg1Of overexpression,inhibits
R10848 T16499 T16498 arg2Of TRAF1,of
R10849 T16500 T16496 arg2Of inhibits,and
R10850 T16503 T16500 arg2Of activation,inhibits
R10851 T16503 T16501 arg1Of activation,TNF-induced
R10852 T16503 T16502 arg1Of activation,NF-κB

GO-BP

Id Subject Object Predicate Lexical cue
T16686 89-105 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation

sentences

Id Subject Object Predicate Lexical cue
T16366 0-106 Sentence denotes Expression of TRAF1 is inducible by TNF and overexpression of TRAF1 inhibits TNF-induced NF-κB activation.
T163 0-106 Sentence denotes Expression of TRAF1 is inducible by TNF and overexpression of TRAF1 inhibits TNF-induced NF-κB activation.

simple1

Id Subject Object Predicate Lexical cue
T16732 77-80 Protein denotes TNF
T16731 62-67 Protein denotes TRAF1
T16730 36-39 Protein denotes TNF
T16729 14-19 Protein denotes TRAF1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17209 23-32 Positive_regulation denotes inducible
T17208 44-58 Gene_expression denotes overexpression
T17207 0-10 Gene_expression denotes Expression
T17206 44-58 Positive_regulation denotes overexpression
T17192 77-80 Protein denotes TNF
T17191 62-67 Protein denotes TRAF1
T17190 36-39 Protein denotes TNF
T17189 14-19 Protein denotes TRAF1
R11350 T17189 T17207 themeOf TRAF1,Expression
R11351 T17190 T17209 causeOf TNF,inducible
R11352 T17191 T17208 themeOf TRAF1,overexpression
R11360 T17207 T17209 themeOf Expression,inducible
R11361 T17208 T17206 themeOf overexpression,overexpression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17034 0-10 Gene_expression denotes Expression
T17033 44-58 Positive_regulation denotes overexpression
T17032 23-32 Positive_regulation denotes inducible
T17018 77-80 Protein denotes TNF
T17017 62-67 Protein denotes TRAF1
T17016 36-39 Protein denotes TNF
T17015 14-19 Protein denotes TRAF1
R11281 T17015 T17034 themeOf TRAF1,Expression
R11282 T17016 T17032 causeOf TNF,inducible
R11283 T17017 T17033 themeOf TRAF1,overexpression
R11291 T17034 T17032 themeOf Expression,inducible

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17261 77-105 Positive_regulation denotes TNF-induced NF-κB activation
T17259 0-19 Gene_expression denotes Expression of TRAF1
T17258 33-105 Negative_regulation denotes by TNF and overexpression of TRAF1 inhibits TNF-induced NF-κB activation
T17252 77-88 Protein denotes TNF-induced
T17244 62-67 Protein denotes TRAF1
T17235 89-94 Protein denotes NF-κB
T17231 36-39 Protein denotes TNF
T17223 11-19 Protein denotes of TRAF1
R11363 T17223 T17259 themeOf of TRAF1,Expression of TRAF1
R11365 T17235 T17261 themeOf NF-κB,TNF-induced NF-κB activation
R11366 T17244 T17258 causeOf TRAF1,by TNF and overexpression of TRAF1 inhibits TNF-induced NF-κB activation
R11369 T17261 T17258 themeOf TNF-induced NF-κB activation,by TNF and overexpression of TRAF1 inhibits TNF-induced NF-κB activation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17119 44-58 Positive_regulation denotes overexpression
T17118 44-58 Gene_expression denotes overexpression
T17117 23-32 Positive_regulation denotes inducible
T17116 0-10 Gene_expression denotes Expression
T17115 89-94 Protein denotes NF-κB
T17114 77-80 Protein denotes TNF
T17113 62-67 Protein denotes TRAF1
T17112 36-39 Protein denotes TNF
T17111 14-19 Protein denotes TRAF1
R11318 T17111 T17116 themeOf TRAF1,Expression
R11319 T17113 T17118 themeOf TRAF1,overexpression
R11320 T17116 T17117 themeOf Expression,inducible
R11321 T17117 T17112 Cause inducible,TNF
R11322 T17118 T17119 themeOf overexpression,overexpression

test3

Id Subject Object Predicate Lexical cue
T16340 14-19 Protein denotes TRAF1
T16339 0-10 Gene_expression denotes Expression
T16322 77-80 Protein denotes TNF
T16321 62-67 Protein denotes TRAF1
T16320 36-39 Protein denotes TNF
T16319 14-19 Protein denotes TRAF1
T16345 77-80 Protein denotes TNF
T16344 62-67 Protein denotes TRAF1
T16343 44-58 Positive_regulation denotes overexpression
T16342 36-39 Protein denotes TNF
T16341 23-32 Positive_regulation denotes inducible
R10759 T16339 T16341 themeOf Expression,inducible
R10760 T16340 T16339 themeOf TRAF1,Expression
R10761 T16342 T16341 causeOf TNF,inducible
R10762 T16343 T16341 causeOf overexpression,inducible
R10763 T16344 T16343 themeOf TRAF1,overexpression