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PMC:3218875 / 28688-28824 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T16287 110-119 Protein denotes ubiquitin
T16286 0-5 Protein denotes TRAF1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16773 135-136 . denotes .
T16772 127-135 NN denotes activity
T16771 120-126 NN denotes ligase
T16770 110-119 NN denotes ubiquitin
T16769 104-109 VBZ denotes lacks
T16768 94-103 RB denotes therefore
T16767 90-93 CC denotes and
T16766 83-89 NN denotes domain
T16765 76-82 NN denotes finger
T16764 71-75 NN denotes RING
T16763 69-70 DT denotes a
T16762 63-68 VBZ denotes lacks
T16761 60-62 PRP denotes it
T16760 52-59 IN denotes because
T16759 45-51 NN denotes family
T16758 37-44 NN denotes protein
T16757 32-36 NNP denotes TRAF
T16756 28-31 DT denotes the
T16755 25-27 IN denotes of
T16754 18-24 NN denotes member
T16753 11-17 JJ denotes unique
T16752 9-10 DT denotes a
T16751 6-8 VBZ denotes is
T16750 0-5 CD denotes TRAF1
R11029 T16751 T16751 ROOT is,is
R11030 T16752 T16754 det a,member
R11031 T16753 T16754 amod unique,member
R11032 T16754 T16751 attr member,is
R11033 T16755 T16754 prep of,member
R11034 T16756 T16759 det the,family
R11035 T16757 T16759 compound TRAF,family
R11036 T16758 T16759 compound protein,family
R11037 T16759 T16755 pobj family,of
R11038 T16760 T16762 mark because,lacks
R11039 T16761 T16762 nsubj it,lacks
R11040 T16762 T16751 advcl lacks,is
R11041 T16763 T16766 det a,domain
R11042 T16764 T16766 compound RING,domain
R11043 T16765 T16766 compound finger,domain
R11044 T16766 T16762 dobj domain,lacks
R11045 T16767 T16762 cc and,lacks
R11046 T16768 T16769 advmod therefore,lacks
R11047 T16769 T16762 conj lacks,lacks
R11048 T16770 T16772 amod ubiquitin,activity
R11049 T16771 T16772 compound ligase,activity
R11050 T16772 T16769 dobj activity,lacks
R11051 T16773 T16751 punct .,is

DLUT931

Id Subject Object Predicate Lexical cue
T17043 110-119 Protein denotes ubiquitin
T17042 0-5 Protein denotes TRAF1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16411 110-119 Protein denotes ubiquitin
T16410 0-5 Protein denotes TRAF1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16456 127-135 NN denotes activity
T16455 120-126 NN denotes ligase
T16454 110-119 NN denotes ubiquitin
T16453 104-109 VB denotes lacks
T16452 94-103 RB denotes therefore
T16451 90-93 CC denotes and
T16450 83-89 NN denotes domain
T16449 76-82 NN denotes finger
T16448 71-75 NN denotes RING
T16447 69-70 DT denotes a
T16446 63-68 VB denotes lacks
T16445 60-62 PRP denotes it
T16444 52-59 IN denotes because
T16443 45-51 NN denotes family
T16442 37-44 NN denotes protein
T16441 32-36 NN denotes TRAF
T16440 28-31 DT denotes the
T16439 25-27 IN denotes of
T16438 18-24 NN denotes member
T16437 11-17 JJ denotes unique
T16436 9-10 DT denotes a
T16435 6-8 VB denotes is
T16434 0-5 NN denotes TRAF1
R10783 T16434 T16435 arg1Of TRAF1,is
R10784 T16435 T16444 arg1Of is,because
R10785 T16438 T16435 arg2Of member,is
R10786 T16438 T16436 arg1Of member,a
R10787 T16438 T16437 arg1Of member,unique
R10788 T16438 T16439 arg1Of member,of
R10789 T16443 T16439 arg2Of family,of
R10790 T16443 T16440 arg1Of family,the
R10791 T16443 T16441 arg1Of family,TRAF
R10792 T16443 T16442 arg1Of family,protein
R10793 T16445 T16446 arg1Of it,lacks
R10794 T16445 T16453 arg1Of it,lacks
R10795 T16446 T16451 arg1Of lacks,and
R10796 T16450 T16446 arg2Of domain,lacks
R10797 T16450 T16447 arg1Of domain,a
R10798 T16450 T16448 arg1Of domain,RING
R10799 T16450 T16449 arg1Of domain,finger
R10800 T16451 T16444 arg2Of and,because
R10801 T16453 T16451 arg2Of lacks,and
R10802 T16453 T16452 arg1Of lacks,therefore
R10803 T16456 T16453 arg2Of activity,lacks
R10804 T16456 T16454 arg1Of activity,ubiquitin
R10805 T16456 T16455 arg1Of activity,ligase

GO-BP

Id Subject Object Predicate Lexical cue
T16682 120-135 http://purl.obolibrary.org/obo/GO_0016874 denotes ligase activity
T16681 110-135 http://purl.obolibrary.org/obo/GO_0034450 denotes ubiquitin ligase activity
T16680 110-135 http://purl.obolibrary.org/obo/GO_1904667 denotes ubiquitin ligase activity
T16679 110-135 http://purl.obolibrary.org/obo/GO_0061630 denotes ubiquitin ligase activity
T16678 110-135 http://purl.obolibrary.org/obo/GO_1904668 denotes ubiquitin ligase activity
T16677 110-135 http://purl.obolibrary.org/obo/GO_1990757 denotes ubiquitin ligase activity
T16676 110-135 http://purl.obolibrary.org/obo/GO_1904666 denotes ubiquitin ligase activity
T16675 110-135 http://purl.obolibrary.org/obo/GO_0050372 denotes ubiquitin ligase activity
T16674 110-135 http://purl.obolibrary.org/obo/GO_0004842 denotes ubiquitin ligase activity

GO-MF

Id Subject Object Predicate Lexical cue
T16697 120-135 http://purl.obolibrary.org/obo/GO_0016874 denotes ligase activity
T16696 110-135 http://purl.obolibrary.org/obo/GO_0034450 denotes ubiquitin ligase activity
T16695 110-135 http://purl.obolibrary.org/obo/GO_0061630 denotes ubiquitin ligase activity
T16694 110-135 http://purl.obolibrary.org/obo/GO_1990757 denotes ubiquitin ligase activity
T16693 110-135 http://purl.obolibrary.org/obo/GO_0050372 denotes ubiquitin ligase activity
T16692 110-135 http://purl.obolibrary.org/obo/GO_0004842 denotes ubiquitin ligase activity
T16691 110-119 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

sentences

Id Subject Object Predicate Lexical cue
T16364 0-136 Sentence denotes TRAF1 is a unique member of the TRAF protein family because it lacks a RING finger domain and therefore lacks ubiquitin ligase activity.
T161 0-136 Sentence denotes TRAF1 is a unique member of the TRAF protein family because it lacks a RING finger domain and therefore lacks ubiquitin ligase activity.

simple1

Id Subject Object Predicate Lexical cue
T16727 110-119 Protein denotes ubiquitin
T16726 0-5 Protein denotes TRAF1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17187 110-119 Protein denotes ubiquitin
T17186 0-5 Protein denotes TRAF1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17013 110-119 Protein denotes ubiquitin
T17012 0-5 Protein denotes TRAF1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17247 69-89 Entity denotes a RING finger domain
T17245 0-5 Protein denotes TRAF1
T17238 32-36 Protein denotes TRAF
T17236 110-135 Protein denotes ubiquitin ligase activity
T17229 110-119 Protein denotes ubiquitin
T17227 25-51 Protein denotes of the TRAF protein family

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17107 104-109 Negative_regulation denotes lacks
T17106 110-126 Protein denotes ubiquitin ligase
T17105 32-36 Protein denotes TRAF
T17104 0-5 Protein denotes TRAF1
R11316 T17106 T17107 themeOf ubiquitin ligase,lacks
R11317 T17107 T17104 Cause lacks,TRAF1

test3

Id Subject Object Predicate Lexical cue
T16337 110-119 Protein denotes ubiquitin
T16336 0-5 Protein denotes TRAF1
T16317 110-119 Protein denotes ubiquitin
T16316 0-5 Protein denotes TRAF1