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PMC:3218875 / 27388-27688 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T15437 228-239 Binding denotes interaction
T15436 165-174 Negative_regulation denotes inhibitor
T15426 278-283 Protein denotes TRAF6
T15425 269-274 Protein denotes IRAK1
T15424 262-267 Protein denotes MyD88
T15423 178-183 Protein denotes IL-1R
T15422 76-81 Protein denotes TIR-8
T15421 45-51 Protein denotes SIGIRR
T15420 0-43 Protein denotes Single-immunoglobulin IL-1 receptor-related
R10157 T15421 T15420 equivalentTo SIGIRR,Single-immunoglobulin IL-1 receptor-related
R10158 T15423 T15436 themeOf IL-1R,inhibitor
R10159 T15423 T15437 themeOf IL-1R,interaction
R10160 T15424 T15437 themeOf MyD88,interaction
R10161 T15425 T15437 themeOf IRAK1,interaction
R10162 T15426 T15437 themeOf TRAF6,interaction

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15890 299-300 . denotes .
T15889 298-299 -RRB- denotes )
T15888 297-298 CD denotes 1
T15887 290-296 NNP denotes Figure
T15886 289-290 -LRB- denotes (
T15885 287-288 NNP denotes ]
T15884 285-287 CD denotes 67
T15883 284-285 NNP denotes [
T15882 278-283 NNP denotes TRAF6
T15881 275-277 CC denotes or
T15880 269-274 NNP denotes IRAK1
T15879 267-268 , denotes ,
T15878 262-267 NNP denotes MyD88
T15877 260-261 , denotes ,
T15876 251-260 NNS denotes receptors
T15875 245-250 DT denotes these
T15874 240-244 IN denotes with
T15873 228-239 NN denotes interaction
T15872 221-227 JJ denotes direct
T15871 213-220 IN denotes through
T15870 204-212 RB denotes probably
T15869 202-203 , denotes ,
T15868 192-202 NN denotes signalling
T15867 188-191 NNP denotes TLR
T15866 184-187 CC denotes and
T15865 178-183 NN denotes IL-1R
T15864 175-177 IN denotes of
T15863 165-174 NN denotes inhibitor
T15862 162-164 DT denotes an
T15861 159-161 IN denotes as
T15860 145-158 VBN denotes characterised
T15859 133-144 RB denotes extensively
T15858 128-132 VBN denotes been
T15857 124-127 VBZ denotes has
T15856 119-123 WDT denotes that
T15855 112-118 NN denotes family
T15854 110-111 NNP denotes R
T15853 108-110 CD denotes -1
T15852 102-108 NNP denotes TLR/IL
T15851 98-101 DT denotes the
T15850 95-97 IN denotes of
T15849 88-94 NN denotes member
T15848 86-87 DT denotes a
T15847 83-85 VBZ denotes is
T15846 81-82 , denotes ,
T15845 76-81 CD denotes TIR-8
T15844 73-75 IN denotes as
T15843 67-72 VBN denotes known
T15842 62-66 RB denotes also
T15841 60-61 , denotes ,
T15840 53-60 NN denotes protein
T15839 51-52 -RRB- denotes )
T15838 45-51 NNP denotes SIGIRR
T15837 44-45 -LRB- denotes (
T15836 27-43 JJ denotes receptor-related
T15835 22-26 NNP denotes IL-1
T15834 0-21 NN denotes Single-immunoglobulin
R10442 T15834 T15840 nmod Single-immunoglobulin,protein
R10443 T15835 T15836 compound IL-1,receptor-related
R10444 T15836 T15840 compound receptor-related,protein
R10445 T15837 T15838 punct (,SIGIRR
R10446 T15838 T15836 appos SIGIRR,receptor-related
R10447 T15839 T15838 punct ),SIGIRR
R10449 T15841 T15840 punct ",",protein
R10450 T15842 T15843 advmod also,known
R10452 T15844 T15843 prep as,known
R10453 T15845 T15844 pobj TIR-8,as
R10455 T15847 T15847 ROOT is,is
R10456 T15848 T15849 det a,member
R10457 T15849 T15847 attr member,is
R10458 T15850 T15849 prep of,member
R10459 T15851 T15855 det the,family
R10460 T15852 T15855 compound TLR/IL,family
R10461 T15853 T15854 nummod -1,R
R10462 T15854 T15855 compound R,family
R10463 T15855 T15850 pobj family,of
R10464 T15856 T15860 nsubjpass that,characterised
R10465 T15857 T15860 aux has,characterised
R10466 T15858 T15860 auxpass been,characterised
R10467 T15859 T15860 advmod extensively,characterised
R10468 T15860 T15855 relcl characterised,family
R10469 T15861 T15860 prep as,characterised
R10470 T15862 T15863 det an,inhibitor
R10471 T15863 T15861 pobj inhibitor,as
R10472 T15864 T15863 prep of,inhibitor
R10473 T15865 T15864 pobj IL-1R,of
R10474 T15866 T15865 cc and,IL-1R
R10475 T15867 T15868 compound TLR,signalling
R10476 T15868 T15865 conj signalling,IL-1R
R10477 T15869 T15847 punct ",",is
R10478 T15870 T15871 advmod probably,through
R10479 T15871 T15847 prep through,is
R10480 T15872 T15873 amod direct,interaction
R10481 T15873 T15871 pobj interaction,through
R10482 T15874 T15873 prep with,interaction
R10483 T15875 T15876 det these,receptors
R10484 T15876 T15874 pobj receptors,with
R10485 T15877 T15873 punct ",",interaction
R10486 T15878 T15873 conj MyD88,interaction
R10487 T15879 T15878 punct ",",MyD88
R10488 T15880 T15878 conj IRAK1,MyD88
R10489 T15881 T15880 cc or,IRAK1
R10490 T15882 T15883 compound TRAF6,[
R10491 T15883 T15880 conj [,IRAK1
R10492 T15884 T15885 nummod 67,]
R10493 T15885 T15880 conj ],IRAK1
R10494 T15886 T15887 punct (,Figure
R10495 T15887 T15885 appos Figure,]
R10496 T15888 T15887 nummod 1,Figure
R10497 T15889 T15887 punct ),Figure
R10498 T15890 T15847 punct .,is

DLUT931

Id Subject Object Predicate Lexical cue
T16102 228-239 Binding denotes interaction
T16101 165-174 Negative_regulation denotes inhibitor
T16091 278-283 Protein denotes TRAF6
T16090 269-274 Protein denotes IRAK1
T16089 262-267 Protein denotes MyD88
T16088 178-183 Protein denotes IL-1R
T16087 76-81 Protein denotes TIR-8
T16086 45-51 Protein denotes SIGIRR
T16085 0-43 Protein denotes Single-immunoglobulin IL-1 receptor-related
R10680 T16088 T16101 themeOf IL-1R,inhibitor
R10681 T16088 T16102 themeOf IL-1R,interaction
R10682 T16088 T16102 themeOf IL-1R,interaction
R10683 T16088 T16102 themeOf IL-1R,interaction
R10684 T16089 T16101 themeOf MyD88,inhibitor
R10685 T16090 T16101 themeOf IRAK1,inhibitor
R10686 T16091 T16101 themeOf TRAF6,inhibitor
R10694 T16102 T16101 themeOf interaction,inhibitor
R10695 T16102 T16101 themeOf interaction,inhibitor
R10696 T16102 T16101 themeOf interaction,inhibitor
R10677 T16085 T16102 themeOf Single-immunoglobulin IL-1 receptor-related,interaction
R10678 T16086 T16102 themeOf SIGIRR,interaction
R10679 T16087 T16102 themeOf TIR-8,interaction

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16058 278-283 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T16057 262-267 http://www.uniprot.org/uniprot/Q99836 denotes MyD88

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T15537 278-283 Protein denotes TRAF6
T15536 269-274 Protein denotes IRAK1
T15535 262-267 Protein denotes MyD88
T15534 178-183 Protein denotes IL-1R
T15533 76-81 Protein denotes TIR-8
T15532 45-51 Protein denotes SIGIRR
T15531 0-43 Protein denotes Single-immunoglobulin IL-1 receptor-related

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T15525 178-183 Antecedent denotes IL-1R
T15524 245-260 Anaphor denotes these receptors
T15523 76-81 Antecedent denotes TIR-8
T15522 119-123 Anaphor denotes that
R10198 T15522 T15523 boundBy that,TIR-8
R10199 T15524 T15525 boundBy these receptors,IL-1R

2_test

Id Subject Object Predicate Lexical cue
21639951-12925853-4289498 285-287 12925853 denotes 67

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15604 298-299 -RRB- denotes )
T15603 297-298 CD denotes 1
T15602 290-296 NN denotes Figure
T15601 289-290 -LRB- denotes (
T15600 287-288 -RRB- denotes ]
T15599 285-287 CD denotes 67
T15598 284-285 -LRB- denotes [
T15597 278-283 NN denotes TRAF6
T15596 275-277 CC denotes or
T15595 269-274 NN denotes IRAK1
T15594 267-268 -COMMA- denotes ,
T15593 262-267 NN denotes MyD88
T15592 260-261 -COMMA- denotes ,
T15591 251-260 NN denotes receptors
T15590 245-250 DT denotes these
T15589 240-244 IN denotes with
T15588 228-239 NN denotes interaction
T15587 221-227 JJ denotes direct
T15586 213-220 IN denotes through
T15585 204-212 RB denotes probably
T15584 202-203 -COMMA- denotes ,
T15583 192-202 NN denotes signalling
T15582 188-191 NN denotes TLR
T15581 184-187 CC denotes and
T15580 178-183 NN denotes IL-1R
T15579 175-177 IN denotes of
T15578 165-174 NN denotes inhibitor
T15577 162-164 DT denotes an
T15576 159-161 IN denotes as
T15575 145-158 VB denotes characterised
T15574 133-144 RB denotes extensively
T15573 128-132 VB denotes been
T15572 124-127 VB denotes has
T15571 119-123 WDT denotes that
T15570 112-118 NN denotes family
T15569 102-111 NN denotes TLR/IL-1R
T15568 98-101 DT denotes the
T15567 95-97 IN denotes of
T15566 88-94 NN denotes member
T15565 86-87 DT denotes a
T15564 83-85 VB denotes is
T15563 81-82 -COMMA- denotes ,
T15562 76-81 NN denotes TIR-8
T15561 73-75 IN denotes as
T15560 67-72 VB denotes known
T15559 62-66 RB denotes also
T15558 60-61 -COMMA- denotes ,
T15557 53-60 NN denotes protein
T15556 51-52 -RRB- denotes )
T15555 45-51 NN denotes SIGIRR
T15554 44-45 -LRB- denotes (
T15553 27-43 JJ denotes receptor-related
T15552 22-26 NN denotes IL-1
T15551 0-21 JJ denotes Single-immunoglobulin
R10205 T15555 T15554 arg2Of SIGIRR,(
R10206 T15556 T15554 arg3Of ),(
R10207 T15557 T15551 arg1Of protein,Single-immunoglobulin
R10208 T15557 T15552 arg1Of protein,IL-1
R10209 T15557 T15553 arg1Of protein,receptor-related
R10210 T15557 T15554 arg1Of protein,(
R10211 T15557 T15558 arg1Of protein,","
R10212 T15557 T15559 arg1Of protein,also
R10213 T15557 T15560 arg2Of protein,known
R10214 T15557 T15564 arg1Of protein,is
R10215 T15560 T15561 arg1Of known,as
R10216 T15562 T15561 arg2Of TIR-8,as
R10217 T15564 T15563 arg1Of is,","
R10218 T15566 T15564 arg2Of member,is
R10219 T15566 T15565 arg1Of member,a
R10220 T15566 T15567 arg1Of member,of
R10221 T15570 T15567 arg2Of family,of
R10222 T15570 T15568 arg1Of family,the
R10223 T15570 T15569 arg1Of family,TLR/IL-1R
R10224 T15570 T15571 arg1Of family,that
R10225 T15570 T15572 arg1Of family,has
R10226 T15570 T15573 arg1Of family,been
R10227 T15570 T15575 arg2Of family,characterised
R10228 T15575 T15572 arg2Of characterised,has
R10229 T15575 T15573 arg2Of characterised,been
R10230 T15575 T15574 arg1Of characterised,extensively
R10231 T15575 T15576 arg1Of characterised,as
R10232 T15575 T15584 arg1Of characterised,","
R10233 T15575 T15586 arg1Of characterised,through
R10234 T15575 T15598 arg1Of characterised,[
R10235 T15575 T15601 arg1Of characterised,(
R10236 T15578 T15576 arg2Of inhibitor,as
R10237 T15578 T15577 arg1Of inhibitor,an
R10238 T15578 T15579 arg1Of inhibitor,of
R10239 T15580 T15581 arg1Of IL-1R,and
R10240 T15582 T15581 arg2Of TLR,and
R10241 T15583 T15579 arg2Of signalling,of
R10242 T15583 T15580 arg1Of signalling,IL-1R
R10243 T15583 T15582 arg1Of signalling,TLR
R10244 T15586 T15585 arg1Of through,probably
R10245 T15588 T15587 arg1Of interaction,direct
R10246 T15588 T15589 arg1Of interaction,with
R10247 T15588 T15594 arg1Of interaction,","
R10248 T15591 T15589 arg2Of receptors,with
R10249 T15591 T15590 arg1Of receptors,these
R10250 T15591 T15592 arg1Of receptors,","
R10251 T15593 T15592 arg2Of MyD88,","
R10252 T15594 T15596 arg1Of ",",or
R10253 T15595 T15594 arg2Of IRAK1,","
R10254 T15596 T15586 arg2Of or,through
R10255 T15597 T15596 arg2Of TRAF6,or
R10256 T15599 T15598 arg2Of 67,[
R10257 T15600 T15598 arg3Of ],[
R10258 T15602 T15601 arg2Of Figure,(
R10259 T15602 T15603 arg1Of Figure,1
R10260 T15604 T15601 arg3Of ),(

UBERON-AE

Id Subject Object Predicate Lexical cue
T15483 133-144 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensively

GO-BP

Id Subject Object Predicate Lexical cue
T15770 192-202 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T15768 178-183 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1R
T15767 106-111 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1R
T15766 22-35 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1 receptor

GO-MF

Id Subject Object Predicate Lexical cue
T15782 178-183 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1R
T15781 106-111 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1R
T15780 22-35 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1 receptor
T15778 22-26 http://purl.obolibrary.org/obo/GO_0005149 denotes IL-1
T15776 7-21 http://purl.obolibrary.org/obo/GO_0003823 denotes immunoglobulin

sentences

Id Subject Object Predicate Lexical cue
T15485 0-300 Sentence denotes Single-immunoglobulin IL-1 receptor-related (SIGIRR) protein, also known as TIR-8, is a member of the TLR/IL-1R family that has been extensively characterised as an inhibitor of IL-1R and TLR signalling, probably through direct interaction with these receptors, MyD88, IRAK1 or TRAF6 [67] (Figure 1).
T153 0-300 Sentence denotes Single-immunoglobulin IL-1 receptor-related (SIGIRR) protein, also known as TIR-8, is a member of the TLR/IL-1R family that has been extensively characterised as an inhibitor of IL-1R and TLR signalling, probably through direct interaction with these receptors, MyD88, IRAK1 or TRAF6 [67] (Figure 1).

simple1

Id Subject Object Predicate Lexical cue
T15820 278-283 Protein denotes TRAF6
T15819 269-274 Protein denotes IRAK1
T15818 262-267 Protein denotes MyD88
T15817 178-183 Protein denotes IL-1R
T15816 76-81 Protein denotes TIR-8
T15815 45-51 Protein denotes SIGIRR
T15814 0-43 Protein denotes Single-immunoglobulin IL-1 receptor-related

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16193 228-239 Binding denotes interaction
T16192 165-174 Negative_regulation denotes inhibitor
T16182 278-283 Protein denotes TRAF6
T16181 269-274 Protein denotes IRAK1
T16180 262-267 Protein denotes MyD88
T16179 178-183 Protein denotes IL-1R
T16178 76-81 Protein denotes TIR-8
T16177 45-51 Protein denotes SIGIRR
T16176 0-43 Protein denotes Single-immunoglobulin IL-1 receptor-related
R10719 T16176 T16192 themeOf Single-immunoglobulin IL-1 receptor-related,inhibitor
R10720 T16176 T16193 themeOf Single-immunoglobulin IL-1 receptor-related,interaction
R10721 T16177 T16192 themeOf SIGIRR,inhibitor
R10722 T16177 T16193 themeOf SIGIRR,interaction
R10723 T16178 T16192 themeOf TIR-8,inhibitor
R10724 T16178 T16193 themeOf TIR-8,interaction
R10725 T16179 T16192 themeOf IL-1R,inhibitor
R10726 T16181 T16192 themeOf IRAK1,inhibitor
R10727 T16181 T16193 themeOf IRAK1,interaction

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16077 165-174 Negative_regulation denotes inhibitor
T16076 228-239 Binding denotes interaction
T16064 262-267 Protein denotes MyD88
T16063 178-183 Protein denotes IL-1R
T16062 76-81 Protein denotes TIR-8
T16061 45-51 Protein denotes SIGIRR
T16060 0-43 Protein denotes Single-immunoglobulin IL-1 receptor-related
T16066 278-283 Protein denotes TRAF6
T16065 269-274 Protein denotes IRAK1
R10665 T16060 T16076 themeOf Single-immunoglobulin IL-1 receptor-related,interaction
R10666 T16061 T16076 themeOf SIGIRR,interaction
R10667 T16062 T16076 themeOf TIR-8,interaction
R10668 T16063 T16076 themeOf IL-1R,interaction
R10669 T16065 T16077 themeOf IRAK1,inhibitor
R10670 T16065 T16076 themeOf IRAK1,interaction

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16240 221-299 Binding denotes direct interaction with these receptors, MyD88, IRAK1 or TRAF6 [67] (Figure 1)
T16237 245-260 Protein denotes these receptors
T16235 178-183 Protein denotes IL-1R
T16234 76-82 Protein denotes TIR-8,
T16233 269-274 Protein denotes IRAK1
T16231 106-111 Protein denotes IL-1R
T16227 165-191 Entity denotes inhibitor of IL-1R and TLR
T16224 0-52 Protein denotes Single-immunoglobulin IL-1 receptor-related (SIGIRR)
T16211 278-288 Protein denotes TRAF6 [67]
T16206 45-51 Protein denotes SIGIRR
T16202 262-267 Protein denotes MyD88
T16201 0-60 Protein denotes Single-immunoglobulin IL-1 receptor-related (SIGIRR) protein
R10735 T16202 T16240 themeOf MyD88,"direct interaction with these receptors, MyD88, IRAK1 or TRAF6 [67] (Figure 1)"
R10736 T16211 T16240 themeOf TRAF6 [67],"direct interaction with these receptors, MyD88, IRAK1 or TRAF6 [67] (Figure 1)"
R10740 T16233 T16240 themeOf IRAK1,"direct interaction with these receptors, MyD88, IRAK1 or TRAF6 [67] (Figure 1)"
R10743 T16237 T16240 themeOf these receptors,"direct interaction with these receptors, MyD88, IRAK1 or TRAF6 [67] (Figure 1)"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15799 165-174 Negative_regulation denotes inhibitor
T15798 165-174 Negative_regulation denotes inhibitor
T15797 228-239 Binding denotes interaction
T15796 228-239 Binding denotes interaction
T15795 278-283 Protein denotes TRAF6
T15794 269-274 Protein denotes IRAK1
T15793 262-267 Protein denotes MyD88
T15792 188-191 Protein denotes TLR
T15791 178-183 Protein denotes IL-1R
T15790 102-118 Protein denotes TLR/IL-1R family
T15789 76-81 Protein denotes TIR-8
T15788 0-35 Protein denotes Single-immunoglobulin IL-1 receptor
R10427 T15788 T15796 themeOf Single-immunoglobulin IL-1 receptor,interaction
R10429 T15794 T15796 themeOf IRAK1,interaction
R10428 T15788 T15797 themeOf Single-immunoglobulin IL-1 receptor,interaction
R10430 T15795 T15797 themeOf TRAF6,interaction
R10431 T15796 T15798 themeOf interaction,inhibitor
R10432 T15797 T15799 themeOf interaction,inhibitor

test3

Id Subject Object Predicate Lexical cue
T15469 278-283 Protein denotes TRAF6
T15468 269-274 Protein denotes IRAK1
T15467 262-267 Protein denotes MyD88
T15466 228-239 Binding denotes interaction
T15465 178-183 Protein denotes IL-1R
T15464 165-174 Negative_regulation denotes inhibitor
T15463 76-81 Protein denotes TIR-8
T15462 45-51 Protein denotes SIGIRR
T15461 0-43 Protein denotes Single-immunoglobulin IL-1 receptor-related
T15450 278-283 Protein denotes TRAF6
T15449 269-274 Protein denotes IRAK1
T15448 262-267 Protein denotes MyD88
T15447 178-183 Protein denotes IL-1R
T15446 76-81 Protein denotes TIR-8
T15445 45-51 Protein denotes SIGIRR
T15444 0-43 Protein denotes Single-immunoglobulin IL-1 receptor-related
R10167 T15461 T15466 themeOf Single-immunoglobulin IL-1 receptor-related,interaction
R10168 T15462 T15461 equivalentTo SIGIRR,Single-immunoglobulin IL-1 receptor-related
R10169 T15463 T15466 themeOf TIR-8,interaction
R10170 T15463 T15461 equivalentTo TIR-8,Single-immunoglobulin IL-1 receptor-related
R10171 T15465 T15466 themeOf IL-1R,interaction
R10172 T15467 T15466 themeOf MyD88,interaction
R10173 T15468 T15466 themeOf IRAK1,interaction
R10174 T15469 T15466 themeOf TRAF6,interaction