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PMC:3218875 / 2518-2820 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T273 172-177 Protein denotes RANKL
T272 136-170 Protein denotes receptor activator of NF-κB ligand
R214 T273 T272 equivalentTo RANKL,receptor activator of NF-κB ligand

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1206 301-302 . denotes .
T1205 300-301 NNP denotes ]
T1204 299-300 CD denotes 7
T1203 298-299 NNP denotes [
T1202 295-297 NNP denotes RA
T1201 292-294 IN denotes as
T1200 287-291 JJ denotes such
T1199 278-286 NNS denotes diseases
T1198 267-277 JJ denotes osteolytic
T1197 264-266 IN denotes in
T1196 256-263 NN denotes erosion
T1195 251-255 NN denotes bone
T1194 248-250 IN denotes of
T1193 242-247 NN denotes cause
T1192 236-241 JJ denotes major
T1191 232-235 DT denotes the
T1190 228-231 VBP denotes are
T1189 209-227 NN denotes osteoclastogenesis
T1188 206-208 IN denotes of
T1187 195-205 NN denotes regulation
T1186 191-194 DT denotes the
T1185 188-190 IN denotes in
T1184 180-187 NNS denotes Defects
T1183 178-179 . denotes .
T1182 177-178 -RRB- denotes )
T1181 172-177 NNP denotes RANKL
T1180 171-172 -LRB- denotes (
T1179 164-170 NN denotes ligand
T1178 158-163 JJ denotes NF-κB
T1177 155-157 IN denotes of
T1176 145-154 NN denotes activator
T1175 136-144 NN denotes receptor
T1174 133-135 IN denotes of
T1173 125-132 NNS denotes effects
T1172 121-124 DT denotes the
T1171 111-120 VBG denotes mediating
T1170 108-110 IN denotes by
T1169 101-107 RB denotes mainly
T1168 99-100 , denotes ,
T1167 81-99 NN denotes osteoclastogenesis
T1166 77-80 IN denotes for
T1165 67-76 JJ denotes essential
T1164 62-66 RB denotes also
T1163 59-61 VBZ denotes is
T1162 53-58 NNP denotes NF-κB
T1161 51-52 , denotes ,
T1160 41-51 NN denotes expression
T1159 36-40 NN denotes gene
T1158 20-35 JJ denotes proinflammatory
T1157 17-19 IN denotes in
T1156 12-16 NN denotes role
T1155 8-11 PRP$ denotes its
T1154 5-7 TO denotes to
T1153 0-4 JJ denotes Next
R963 T1153 T1163 advmod Next,is
R964 T1154 T1153 prep to,Next
R965 T1155 T1156 poss its,role
R966 T1156 T1154 pobj role,to
R967 T1157 T1156 prep in,role
R968 T1158 T1160 amod proinflammatory,expression
R969 T1159 T1160 compound gene,expression
R970 T1160 T1157 pobj expression,in
R971 T1161 T1163 punct ",",is
R972 T1162 T1163 nsubj NF-κB,is
R973 T1163 T1163 ROOT is,is
R974 T1164 T1163 advmod also,is
R975 T1165 T1163 acomp essential,is
R976 T1166 T1165 prep for,essential
R977 T1167 T1166 pobj osteoclastogenesis,for
R978 T1168 T1166 punct ",",for
R979 T1169 T1170 advmod mainly,by
R980 T1170 T1163 prep by,is
R981 T1171 T1170 pcomp mediating,by
R982 T1172 T1173 det the,effects
R983 T1173 T1171 dobj effects,mediating
R984 T1174 T1173 prep of,effects
R985 T1175 T1176 compound receptor,activator
R986 T1176 T1174 pobj activator,of
R987 T1177 T1176 prep of,activator
R988 T1178 T1179 amod NF-κB,ligand
R989 T1179 T1177 pobj ligand,of
R990 T1180 T1181 punct (,RANKL
R992 T1181 T1179 appos RANKL,ligand
R995 T1182 T1163 punct ),is
R996 T1183 T1163 punct .,is
R998 T1184 T1190 nsubj Defects,are
R1000 T1185 T1184 prep in,Defects
R1004 T1186 T1187 det the,regulation
R1008 T1187 T1185 pobj regulation,in
R1011 T1188 T1187 prep of,regulation
R1018 T1189 T1188 pobj osteoclastogenesis,of
R1022 T1190 T1190 ROOT are,are
R1026 T1191 T1193 det the,cause
R1027 T1192 T1193 amod major,cause
R1028 T1193 T1190 attr cause,are
R1029 T1194 T1193 prep of,cause
R1030 T1195 T1196 compound bone,erosion
R1031 T1196 T1194 pobj erosion,of
R1032 T1197 T1196 prep in,erosion
R1033 T1198 T1199 amod osteolytic,diseases
R1034 T1199 T1197 pobj diseases,in
R1035 T1200 T1201 amod such,as
R1036 T1201 T1199 prep as,diseases
R1037 T1202 T1203 compound RA,[
R1038 T1203 T1201 pobj [,as
R1039 T1204 T1205 nummod 7,]
R1040 T1205 T1203 conj ],[
R1041 T1206 T1190 punct .,are

DLUT931

Id Subject Object Predicate Lexical cue
T1404 111-120 Positive_regulation denotes mediating
T1403 125-132 Regulation denotes effects
T1396 172-177 Protein denotes RANKL
T1395 136-170 Protein denotes receptor activator of NF-κB ligand
R1121 T1395 T1403 themeOf receptor activator of NF-κB ligand,effects
R1126 T1403 T1404 themeOf effects,mediating

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T369 172-177 Protein denotes RANKL
T368 136-170 Protein denotes receptor activator of NF-κB ligand

2_test

Id Subject Object Predicate Lexical cue
21639951-16356770-4289431 299-300 16356770 denotes 7

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T718 191-194 DT denotes the
T737 300-301 -RRB- denotes ]
T736 299-300 CD denotes 7
T735 298-299 -LRB- denotes [
T734 295-297 NN denotes RA
T733 292-294 IN denotes as
T732 287-291 JJ denotes such
T731 278-286 NN denotes diseases
T730 267-277 JJ denotes osteolytic
T729 264-266 IN denotes in
T728 256-263 NN denotes erosion
T727 251-255 NN denotes bone
T726 248-250 IN denotes of
T725 242-247 NN denotes cause
T724 236-241 JJ denotes major
T723 232-235 DT denotes the
T722 228-231 VB denotes are
T721 209-227 NN denotes osteoclastogenesis
T720 206-208 IN denotes of
T719 195-205 NN denotes regulation
T717 188-190 IN denotes in
T716 180-187 NN denotes Defects
T715 177-178 -RRB- denotes )
T714 172-177 NN denotes RANKL
T713 171-172 -LRB- denotes (
T712 164-170 NN denotes ligand
T711 158-163 NN denotes NF-κB
T710 155-157 IN denotes of
T709 145-154 NN denotes activator
T708 136-144 NN denotes receptor
T707 133-135 IN denotes of
T706 125-132 NN denotes effects
T705 121-124 DT denotes the
T704 111-120 VB denotes mediating
T703 108-110 IN denotes by
T702 101-107 RB denotes mainly
T701 99-100 -COMMA- denotes ,
T700 81-99 NN denotes osteoclastogenesis
T699 77-80 IN denotes for
T698 67-76 JJ denotes essential
T697 62-66 RB denotes also
T696 59-61 VB denotes is
T695 53-58 NN denotes NF-κB
T694 51-52 -COMMA- denotes ,
T693 41-51 NN denotes expression
T692 36-40 NN denotes gene
T691 20-35 JJ denotes proinflammatory
T690 17-19 IN denotes in
T689 12-16 NN denotes role
T688 8-11 PRP-DOLLAR- denotes its
T687 5-7 TO denotes to
T686 0-4 JJ denotes Next
R552 T686 T687 arg1Of Next,to
R553 T689 T687 arg2Of role,to
R554 T689 T688 arg1Of role,its
R555 T689 T690 arg1Of role,in
R556 T693 T690 arg2Of expression,in
R557 T693 T691 arg1Of expression,proinflammatory
R558 T693 T692 arg1Of expression,gene
R559 T695 T696 arg1Of NF-κB,is
R560 T695 T698 arg1Of NF-κB,essential
R561 T695 T704 arg1Of NF-κB,mediating
R562 T696 T686 arg1Of is,Next
R563 T696 T694 arg1Of is,","
R564 T696 T697 arg1Of is,also
R565 T696 T701 arg1Of is,","
R566 T696 T703 arg1Of is,by
R567 T698 T696 arg2Of essential,is
R568 T698 T699 arg1Of essential,for
R569 T700 T699 arg2Of osteoclastogenesis,for
R570 T703 T702 arg1Of by,mainly
R571 T704 T703 arg2Of mediating,by
R572 T706 T704 arg2Of effects,mediating
R573 T706 T705 arg1Of effects,the
R574 T706 T707 arg1Of effects,of
R575 T709 T707 arg2Of activator,of
R576 T709 T708 arg1Of activator,receptor
R577 T709 T710 arg1Of activator,of
R578 T712 T710 arg2Of ligand,of
R579 T712 T711 arg1Of ligand,NF-κB
R580 T712 T713 arg1Of ligand,(
R581 T714 T713 arg2Of RANKL,(
R582 T715 T713 arg3Of ),(
R583 T716 T717 arg1Of Defects,in
R584 T716 T722 arg1Of Defects,are
R585 T719 T717 arg2Of regulation,in
R586 T719 T718 arg1Of regulation,the
R587 T719 T720 arg1Of regulation,of
R588 T721 T720 arg2Of osteoclastogenesis,of
R589 T722 T729 arg1Of are,in
R590 T725 T722 arg2Of cause,are
R591 T725 T723 arg1Of cause,the
R592 T725 T724 arg1Of cause,major
R593 T725 T726 arg1Of cause,of
R594 T728 T726 arg2Of erosion,of
R595 T728 T727 arg1Of erosion,bone
R596 T731 T729 arg2Of diseases,in
R597 T731 T730 arg1Of diseases,osteolytic
R598 T731 T733 arg1Of diseases,as
R599 T733 T732 arg1Of as,such
R600 T734 T733 arg2Of RA,as
R601 T734 T735 arg1Of RA,[
R602 T736 T735 arg2Of 7,[
R603 T737 T735 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T795 195-205 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T787 36-51 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

GO-MF

Id Subject Object Predicate Lexical cue
T810 164-170 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand

sentences

Id Subject Object Predicate Lexical cue
T334 180-302 Sentence denotes Defects in the regulation of osteoclastogenesis are the major cause of bone erosion in osteolytic diseases such as RA [7].
T333 0-179 Sentence denotes Next to its role in proinflammatory gene expression, NF-κB is also essential for osteoclastogenesis, mainly by mediating the effects of receptor activator of NF-κB ligand (RANKL).
T16 0-179 Sentence denotes Next to its role in proinflammatory gene expression, NF-κB is also essential for osteoclastogenesis, mainly by mediating the effects of receptor activator of NF-κB ligand (RANKL).
T17 180-302 Sentence denotes Defects in the regulation of osteoclastogenesis are the major cause of bone erosion in osteolytic diseases such as RA [7].

simple1

Id Subject Object Predicate Lexical cue
T827 172-177 Protein denotes RANKL
T826 136-170 Protein denotes receptor activator of NF-κB ligand

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1520 172-177 Protein denotes RANKL
T1519 136-170 Protein denotes receptor activator of NF-κB ligand

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1293 172-177 Protein denotes RANKL
T1292 136-170 Protein denotes receptor activator of NF-κB ligand

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1580 267-301 Protein denotes osteolytic diseases such as RA [7]
T1578 158-163 Protein denotes NF-κB
T1573 158-178 Entity denotes NF-κB ligand (RANKL)
T1565 172-177 Protein denotes RANKL
T1554 53-58 Protein denotes NF-κB
T1534 136-178 Protein denotes receptor activator of NF-κB ligand (RANKL)

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1375 145-154 Positive_regulation denotes activator
T1374 145-154 Positive_regulation denotes activator
T1373 172-177 Protein denotes RANKL
T1372 158-170 Protein denotes NF-κB ligand
T1371 53-58 Protein denotes NF-κB
R1104 T1372 T1374 themeOf NF-κB ligand,activator
R1105 T1373 T1375 themeOf RANKL,activator

test3

Id Subject Object Predicate Lexical cue
T316 172-177 Protein denotes RANKL
T315 136-170 Protein denotes receptor activator of NF-κB ligand
T295 172-177 Protein denotes RANKL
T294 136-170 Protein denotes receptor activator of NF-κB ligand
R228 T316 T315 equivalentTo RANKL,receptor activator of NF-κB ligand